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A palaeogenetic analysis has been undertaken on the pre-Hispanic settlement of Los Amarillos (Regional Development Period, Jujuy Province, Argentina) to reconstruct kin relationship between individuals buried in two domestic areas. The aim of this study was first to genetically characterize the relationships between the individuals buried within the same funerary structure and, secondly, to correlate these genetic data with archaeo-anthropological data to discuss the burial practices and social organization of the Los Amarillos community. An analysis of both uniparental (mtDNA and Y-chromosome) and biparental (autosomal STRs) genetic markers was conducted on eighteen individuals recovered from three different burial structures. The very good DNA preservation contributed to characterize 13 mitochondrial haplotypes, 5 Y-chromosomal haplotypes and 11 complete autosomal STR profiles. The kinship analysis revealed that the domestic areas were used as family graves. Furthermore, they reveal that a maternal lineage is shared by a majority of the studied individuals from different sectors, suggesting matrilocal practices. Fil: Mendisco, Fanny. Université Paul Sabatier; Francia. Université de Strasbourg; Francia Fil: Keyser, Christine. Université de Strasbourg; Francia. Université Paul Sabatier; Francia Fil: Seldes, Verónica. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Filosofía y Letras. Instituto Interdisciplinario Tilcara; Argentina Fil: Nielsen, Axel Emil. Secretaría de Cultura de la Nación. Dirección Nacional de Cultura y Museos. Instituto Nacional de Antropología y Pensamiento Latinoamericano; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Russo, Maria Gabriela. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Crubézy, Eric. Université Paul Sabatier; Francia Fil: Ludes, Bertrand. Université de Strasbourg; Francia. Université Paul Sabatier; Francia

Recent ancient DNA studies on European Neolithic human populations have provided persuasive evidence of a major migration of farmers originating from the Aegean, accompanied by sporadic hunter-gatherer admixture into early Neolithic populations, but increasing toward the Late Neolithic. In this context, ancient mitochondrial DNA data collected from the Neolithic necropolis of Gurgy (Paris Basin, France), the largest mitochondrial DNA sample obtained from a single archeological site for the Early/Middle Neolithic period, indicate little differentiation from farmers associated to both the Danubian and Mediterranean Neolithic migration routes, as well as from Western European hunter-gatherers. To test whether this pattern of differentiation could arise in a single unstructured population by genetic drift alone, we used serial coalescent simulations. We explore female effective population size parameter combinations at the time of the colonization of Europe 45000 years ago and the most recent of the Neolithic samples analyzed in this study 5900 years ago, and identify conditions under which population panmixia between hunter-gatherers/Early-Middle Neolithic farmers and Gurgy cannot be rejected. In relation to other studies on the current debate of the origins of Europeans, these results suggest increasing hunter-gatherer admixture into farmers' group migrating farther west in Europe.

Objectives The arrival of Neolithic farmers in Europe was the source of major cultural and genetic transitions. Neolithic settlers brought a new set of maternal lineages (mitochondrial DNA), recently well-characterized on the continental road, from the Balkans to West Germany (Rhine River). In the present study, the first mitochondrial DNA data from groups associated with this continental expansion wave located west of the Rhine River has been provided and their genetic affinities with contemporary groups have been discussed. Material and methods The mitochondrial DNA analysis of 27 human remains originating from Obernai (5,000–4,400 cal. BC), a necropolis located in French Alsace Region and attributed to Grossgartach, Planig–Friedberg, and Roessen cultures was conducted. Results and discussion Among the 27 individuals studied, 15 HVR-I sequences and 17 mitochondrial haplogroups could be determined. The analysis of the Obernai gene pool clearly confirmed the genetic homogeneity of Linearbandkeramik (LBK) groups on both sides of the Rhine River. Notably, one N1a sequence found in Obernai is shared with LBK farmers from Central Europe, including one individual from the Flomborn site located approximately 200 km north-east of Obernai. On the whole, data gathered so far showed major genetic influence of the Danubian wave from Transdanubia to Atlantic French Coast, going by Alsace Region. However, the genetic influence of descendants from the Mediterranean Neolithic expansion and the significant hunter-gatherer admixture detected further west in the Paris Basin were not perceived in the Obernai necropolis. Conclusions Genetic homogeneity and continuity within LBK groups can be proposed on both sides of the Rhine River for the middle Neolithic groups. Nevertheless, mitochondrial data gathered so far for Neolithic groups from the entire extant French Territory clearly point out the complexity and the variability of Neolithic communities interactions that is worthy of further investigation.

Almost all pre-Hispanic societies from Quebrada de Humahuaca (north-western Argentina) buried their defuncts in domestic areas, demonstrating the importance of death and its daily presence among the living. Presumably, the collective graves contained related individuals, a hypothesis that can be tested through the study of ancient DNA. This study analyzes autosomal and uniparental genetic markers in individuals from two archaeological sites in Quebrada de Humahuaca occupied during the Late Formative (1450-1050 BP) and Regional Developments I (1050-700 BP) periods. Mitochondrial and Y-chromosome haplotypes were compared in order to establish possible maternal and paternal relatedness. Genotypes for 15 autosomal STRs were used to calculate pairwise relatedness coefficients and pedigree probabilities. High kinship levels among individuals buried in the same graves were found in both sites. Although only two particular cases were analyzed, these results represent an important contribution to the study of mortuary practices in the region by means of ancient DNA.

Objectives The history of the Caribbean region is marked by numerous and various successive migration waves that resulted in a global blending of African, European, and Amerindian lineages. As the origin and genetic composition of the current population of French Caribbean islands has not been studied to date, we used both mitochondrial DNA and Y-chromosome markers to complete the characterization of the dynamics of admixture in the Guadeloupe archipelago. Materials and methods We sequenced the mitochondrial hypervariable regions and genotyped mitochondrial and Y-chromosomal single nucleotide polymorphisms (SNPs) of 198 individuals from five localities of the Guadeloupe archipelago. Results The maternal haplogroups revealed a blend of 85% African lineages (mainly traced to Western, West-Central, and South-Eastern Africa), 12.5% Eurasian lineages, and 0.5% Amerindian lineages. We highlighted disequilibria between European paternal contribution (44%) and European maternal contribution (7%), pointing out an important sexual asymmetry. Finally, the estimated Native American component was strikingly low and supported the near-extinction of native lineages in the region. Discussion We confirmed that all historically known migratory events indeed left a visible genetic imprint in the contemporary Caribbean populations. The data gathered clearly demonstrated the significant impact of the transatlantic slave trade on the Guadeloupean population's constitution. Altogether, the data in our study confirm that in the Caribbean region, human population variation is correlated with colonial and postcolonial policies and unique island histories.

Objectives: The main aim of this work was to contribute to the knowledge of pre-Hispanic genetic variation and population structure among the South-central Andes Area by studying individuals from Quebrada de Humahuaca, North-western (NW) Argentina. Materials and methods: We analyzed 15 autosomal STRs in 19 individuals from several archaeological sites in Quebrada de Humahuaca, belonging to the Regional Developments Period (900–1430 AD). Compiling autosomal, mitochondrial, and Y-chromosome data, we evaluated population structure and differentiation among eight South-central Andean groups from the current territories of NW Argentina and Peru. Results: Autosomal data revealed a structuring of the analyzed populations into two clusters which seemed to represent different temporalities in the Andean pre-Hispanic history: pre-Inca and Inca. All pre-Inca samples fell into the same cluster despite being from the two different territories of NW Argentina and Peru. Also, they were systematically differentiated from the Peruvian Inca group. These results were mostly confirmed by mitochondrial and Y-chromosome analyses. We mainly found a clearly different haplotype composition between clusters. Discussion: Population structure in South America has been mostly studied on current native groups, mainly showing a west-to-east differentiation between the Andean and lowland regions. Here we demonstrated that genetic population differentiation preceded the European contact and might have been more complex than thought, being found within the South-central Andes Area. Moreover, divergence among temporally different populations might be reflecting socio-political changes occurred in the evermore complex pre-Hispanic Andean societies. Fil: Russo, Maria Gabriela. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Mendisco, Fanny. Centre National de la Recherche Scientifique; Francia. Université Paul Sabatier; Francia Fil: Avena, Sergio Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Filosofía y Letras; Argentina. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina Fil: Crespo, Cristian Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina Fil: Arencibia, Valeria. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina Fil: Dejean, Cristina Beatriz. Universidad Maimónides. Área de Investigaciones Biomédicas y Biotecnológicas. Centro de Estudios Biomédicos, Biotecnológicos, Ambientales y de Diagnóstico; Argentina. Universidad de Buenos Aires. Facultad de Filosofía y Letras; Argentina Fil: Seldes, Verónica. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Filosofía y Letras. Instituto Interdisciplinario Tilcara; Argentina

Summary This palaeogenetic study focused on the analysis of a late prehispanic Argentinean group from the Humahuaca valley, with the main aim of reconstructing its (micro)evolutionary history. The Humahuaca valley, a natural passageway from the eastern plains to the highlands, was the living environment of Andean societies whose cultural but especially biological diversity is still poorly understood. We analyzed the DNA extracted from 39 individuals who populated this upper valley during the Regional Development period (RDP) (between the 11th and 15th centuries CE), to determine their maternal and paternal genetic ancestry. Some mitochondrial and Y-chromosomal haplotypes specific to the Andean region are consistent with an origin in the highlands of Central Andes. On the other hand, a significant genetic affinity with contemporary admixed communities of the Chaco area was detected. Expectedly, recent demographic events, such as the expansion of the Inca Empire or the European colonization, have changed the original mitochondrial gene pool of the ancient Humahuaca Valley community. Finally, we identified a particular geographical organization of the prehispanic populations of Northwestern Argentina. Our results suggest that the communities of the region were divided between two different spheres of interaction, which is consistent with assumptions made by means of craniometric traits.

The analysis of ancient DNA recovered from archaeological remains can be used to reconstruct kinship among the occupants of a necropolis and provide a more detailed portrait of the community considered. Such palaeogenetic analyses have been conducted on sarcophagi excavated from the Merovingian necropolis in Jau-Dignac et Loirac (7th–8th century AD, Aquitaine, southwest France). The genetic study consisted of the analysis of mitochondrial DNA and nuclear STRs (Short Tandem Repeats) from nine skeletons deposited in three grouped sarcophagi. Only data concerning the mitochondrial genomes could be obtained, and six different mitochondrial lineages were retrieved from eight samples. Our analyses permitted a high confidence characterisation of maternal relationships between individuals deposited in the same sepulchre. These results are important and novel for the period and region and argue that individuals were grouped inside sarcophagi according to relationship criteria. The presence of perinatal remains in one sarcophagus was particularly striking because access to this type of funerary structure during this period was generally reserved for older children. Moreover, we demonstrated genetically that the perinatal remains were not related maternally to two women found in the same sarcophagus (whereas the maternal relationship between the two young women could be determined), and we proposed different possible explanations for this unexpected observation. Overall, archaeological, anthropological and genetic data suggest that the Jau-Dignac et Loirac necropolis groups together the closely and distantly related members of a High Middle Ages familia. Our ancient DNA analyses note the important contribution of palaeogenetic analyses to archaeological kinship studies.

Almost all pre-Hispanic societies from Quebrada de Humahuaca (north-western Argentina) buried their defuncts in domestic areas, demonstrating the importance of death and its daily presence among the living. Presumably, the collective graves contained related individuals, a hypothesis that can be tested through the study of ancient DNA. This study analyzes autosomal and uniparental genetic markers in individuals from two archaeological sites in Quebrada de Humahuaca occupied during the Late Formative (1450-1050 BP) and Regional Developments I (1050-700 BP) periods. Mitochondrial and Y-chromosome haplotypes were compared in order to establish possible maternal and paternal relatedness. Genotypes for 15 autosomal STRs were used to calculate pairwise relatedness coefficients and pedigree probabilities. High kinship levels among individuals buried in the same graves were found in both sites. Although only two particular cases were analyzed, these results represent an important contribution to the study of mortuary practices in the region by means of ancient DNA.

Ancient DNA recovered from 21 individuals excavated from burial sites in the Pampa Grande (PG) region (Salta province) of North-Western Argentina (NWA) was analyzed using various genetic markers (mitochondrial DNA, autosomal STRs, and Y chromosomal STRs). The results were compared to ancient and modern DNA from various populations in the Andean and North Argentinean regions, with the aim of establishing their relationships with PG. The mitochondrial haplogroup frequencies described (11% A, 47% B, and 42% D) presented values comparable to those found for the ancient Andean populations from Peru and San Pedro de Atacama. On the other hand, mitochondrial and Y chromosomal haplotypes were specific to PG, as they did not match any other of the South American populations studied. The described genetic diversity indicates homogeneity in the genetic structure of the ancient Andean populations, which was probably facilitated by the intense exchange network in the Andean zone, in particular among Tiwanaku, San Pedro de Atacama, and NWA. The discovery of haplotypes unique to PG could be due to a loss of genetic diversity caused by recent events affecting the autochthonous populations (establishment of the Inca Empire in the region, colonization by the Europeans).

The arrival of Neolithic farmers in Europe was the source of major cultural and genetic transitions. Neolithic settlers brought a new set of maternal lineages (mitochondrial DNA), recently well-characterized on the continental road, from the Balkans to West Germany (Rhine River). In the present study, the first mitochondrial DNA data from groups associated with this continental expansion wave located west of the Rhine River has been provided and their genetic affinities with contemporary groups have been discussed.The mitochondrial DNA analysis of 27 human remains originating from Obernai (5,000-4,400 cal. BC), a necropolis located in French Alsace Region and attributed to Grossgartach, Planig-Friedberg, and Roessen cultures was conducted.Among the 27 individuals studied, 15 HVR-I sequences and 17 mitochondrial haplogroups could be determined. The analysis of the Obernai gene pool clearly confirmed the genetic homogeneity of Linearbandkeramik (LBK) groups on both sides of the Rhine River. Notably, one N1a sequence found in Obernai is shared with LBK farmers from Central Europe, including one individual from the Flomborn site located approximately 200 km north-east of Obernai. On the whole, data gathered so far showed major genetic influence of the Danubian wave from Transdanubia to Atlantic French Coast, going by Alsace Region. However, the genetic influence of descendants from the Mediterranean Neolithic expansion and the significant hunter-gatherer admixture detected further west in the Paris Basin were not perceived in the Obernai necropolis.Genetic homogeneity and continuity within LBK groups can be proposed on both sides of the Rhine River for the middle Neolithic groups. Nevertheless, mitochondrial data gathered so far for Neolithic groups from the entire extant French Territory clearly point out the complexity and the variability of Neolithic communities interactions that is worthy of further investigation.

The French Paris Basin is well known as a complex cultural area of the Early/Middle Neolithic, particularly with respect to funerary practices. Gurgy “Les Noisats”, which is an important necropolis in the southern Paris basin, is a burial site (N = 128) associated with the first Neolithic groups established in that area. The understanding of the necropolis composition and organization is complicated given the substantial homogeneity of the site's spatial organization in relation to a great diversity of characterized funerary traits. The unprecedented quantity of genetic (mitochondrial DNA), osteological (sex, age), and archaeological (funerary) data obtained for the Gurgy necropolis facilitates the search for potential correlations between cultural and biological (i.e. genetic and osteological) diversity at the site level. Despite the application of the powerful geographic information system, no correlation could be detected (i) between individual maternal lineages and specific bioarchaeological profiles (ii) or between maternal lineages and spatially identified bio-archaeological clusters. Therefore, analyses were performed to test for a correlation between the maternal ancestries of the individuals (i.e., hunter-gatherer/Central European farmer and Southern European farmer ancestries) and specific funerary traits. Again, the homogeneity of the funerary treatment of all of the individuals regardless of their potential maternal ancestries is striking. Taken together, our results regarding the way in which the Gurgy necropolis functioned provide strong evidence for the acculturation of all maternal ancestries groups, at least in terms of funerary practice. In addition, the demonstration of a recurrent association of adult men and immature individuals suggests a patrilocal system, which could be consistent with the detected acculturation of women who present a hunter-gatherer ancestry.

International audience; The rapid Arab-Islamic conquest during the early Middle Ages led to major political and cultural changes in the Mediterranean world. Although the early medieval Muslim presence in the Iberian Peninsula is now well documented, based in the evaluation of archeological and historical sources, the Muslim expansion in the area north of the Pyrenees has only been documented so far through textual sources or rare archaeological data. Our study provides the first archaeo-anthropological testimony of the Muslim establishment in South of France through the multidisciplinary analysis of three graves excavated at Nimes. First, we argue in favor of burials that followed Islamic rites and then note the presence of a community practicing Muslim traditions in Nimes. Second, the radiometric dates obtained from all three human skeletons (between the 7th and the 9th centuries AD) echo historical sources documenting an early Muslim presence in southern Gaul (i.e., the first half of 8th century AD). Finally, palaeogenomic analyses conducted on the human remains provide arguments in favor of a North African ancestry of the three individuals, at least considering the paternal lineages. Given all of these data, we propose that the skeletons from the Nimes burials belonged to Berbers integrated into the Umayyad army during the Arab expansion in North Africa. Our discovery not only discusses the first anthropological and genetic data concerning the Muslim occupation of the Visigothic territory of Septimania but also highlights the complexity of the relationship between the two communities during this period.

An intense debate concerning the nature and mode of Neolithic transition in Europe has long received much attention. Recent publications of paleogenetic analyses focusing on ancient European farmers from Central Europe or the Iberian Peninsula have greatly contributed to this debate, providing arguments in favor of major migrations accompanying European Neolithization and highlighting noticeable genetic differentiation between farmers associated with two archaeologically defined migration routes: the Danube valley and the Mediterranean Sea. The aim of the present study was to fill a gap with the first paleogenetic data of Neolithic settlers from a region (France) where the two great currents came into both direct and indirect contact with each other. To this end, we analyzed the Gurgy 'Les Noisats' group, an Early/Middle Neolithic necropolis in the southern part of the Paris Basin. Interestingly, the archaeological record from this region highlighted a clear cultural influence from the Danubian cultural sphere but also notes exchanges with the Mediterranean cultural area. To unravel the processes implied in these cultural exchanges, we analyzed 102 individuals and obtained the largest Neolithic mitochondrial gene pool so far (39 HVS-I mitochondrial sequences and haplogroups for 55 individuals) from a single archaeological site from the Early/Middle Neolithic period. Pairwise F ST values, haplogroup frequencies and shared informative haplotypes were calculated and compared with ancient and modern European and Near Eastern populations. These descriptive analyses provided patterns resulting from different evolutionary scenarios; however, the archaeological data available for the region suggest that the Gurgy group was formed through equivalent genetic contributions of farmer descendants from the Danubian and Mediterranean Neolithization waves. However, these results, that would constitute the most ancient genetic evidence of admixture between farmers from both Central and Mediterranean migration routes in the European Neolithization debate, are subject to confirmation through appropriate model-based approaches.

The identity and history of the indigenous groups who occupied the Lesser Antilles during the ceramic periods remain highly controversial. Although recent archaeological evidence has challenged hypotheses concerning the organization of human groups in this region, more biological data are needed to fully inform the discussion. Our study provides, to our knowledge, the first palaeogenetic data for Late Ceramic groups of the Guadeloupe archipelago, yielding crucial information concerning the identities of these groups. Despite the generally poor DNA preservation in the tested remains, we were able to retrieve Hypervariable Region 1 sequences from 11 individuals and mitochondrial single-nucleotide polymorphisms from 13 individuals. These novel data provide interesting preliminary results in favour of a common origin for all Saladoid Caribbean communities, i.e. the first ceramic groups of the region, as well as for a local continuity between the Saladoid and post-Saladoid groups. A combination of the genetic data obtained and several pieces of cultural evidence allows us to propose that two different groups inhabited the Guadeloupe archipelago during the Late Ceramic period, with the possible occupation of the La Désirade and Marie-Galante islands by groups affiliated with the Taíno communities. The working hypotheses proposed here appear consistent with recent archaeological evidence.

International audience; Objectives: The history of European populations is characterised by numerous migrations or demographic events that are likely to have had major impacts on the European gene pool patterns. This paper will focus on how ancient DNA (aDNA) data contribute to our understanding of past population dynamics in Europe. Methods: Technological challenges of the palaeogenetic approach will be discussed. With these limitations in mind, it will be shown that the acquisition of aDNA now permits a glimpse of how human genetic diversity has changed, spatially and temporally, in Europe, from the Palaeolithic through to the present day. Results: Although early modern human DNA sequences come only from rare exceptionally well-preserved specimens, genetic samples of a reasonable size are becoming available for the Mesolithic and the Neolithic periods, permitting a discussion of regional variation in the inferred mode of the spread of farming. Palaeogenetic data collected for ancient and more recent periods regularly demonstrate genetic discontinuity between past and present populations. Conclusions: The results indicate that only large diachronic aDNA datasets from throughout Europe will permit researchers to reliably identify all demographic and evolutionary events that shaped the modern European gene pool

Pampa Grande (PG) y Los Amarillos (LA) son dos sitios arqueológicos del noroeste argentino (NOA), en los que el estudio de ADN antiguo ha permitido determinar el sexo de los individuos y analizar los linajes paternos y maternos presentes. PG (Salta) se ha adjudicado al Período Formativo y LA, ubicado en la Quebrada de Humahuaca (Jujuy), habría tenido una masiva ocupación hacia el Período de Desarrollos Regionales. El objetivo de este trabajo es comparar ambos sitios en cuanto a su diversidad genética analizando los haplogrupos y haplotipos de ADN mitocondrial estudiados en dichas poblaciones. Se incluyeron en el análisis 19 individuos de PG y 18 de LA. Al analizar los linajes mitocondriales, se observa que los únicos haplogrupos compartidos entre ambas poblaciones son los haplogrupos A2 y D1, encontrados habitualmente en poblaciones amerindias. Por otro lado, no se detectó el haplogrupo B2 en LA, ni el C1 en PG. Los análisis de variación génica realizados a partir de la Región Hipervariable I indican una diferenciación genética significativa entre ambos sitios, siendo PG el más variable. Mecanismos microevolutivos asociados a la distancia geográfica y temporal parecen haber moldeado la diversidad intra e interpoblacional entre estos dos sitios prehispánicos del NOA., Pampa Grande (PG) and Los Amarillos (LA) are two archaeological sites in northwestern Argentina for which the sex of the individuals was determined and maternal and paternal lineages were analyzed by means of ancient DNA studies. PG (Salta province) is attributed to the Formative Period and LA (Quebrada de Humahuaca, Jujuy) would have been massively occupied in the Regional Developments Period. The aim of this work is to compare both sites in terms of their genetic diversity by analyzing mitochondrial haplogroups and haplotypes studied in both populations. In the analysis, 19 individuals from PG and 18 from LA were included. Studying mitochondrial lineages, we observed the absence of haplogroups B2 in LA and C1 in PG; while only A2 and D1, usually found in Native American populations, were shared by the sites. All genetic variation analyses considering the Hypervariable Region I indicate a significant genetic differentiation between the sites, with PG having the highest variability. Micro-evolutionary mechanisms associated to geographical and temporal distances may have shaped the intra and interpopulation diversity of these two Pre-hispanic sites from northwestern Argentina., Facultad de Ciencias Naturales y Museo

This palaeogenetic study focused on the analysis of a late prehispanic Argentinean group from the Humahuaca valley, with the main aim of reconstructing its (micro)evolutionary history. The Humahuaca valley, a natural passageway from the eastern plains to the highlands, was the living environment of Andean societies whose cultural but especially biological diversity is still poorly understood. We analyzed the DNA extracted from 39 individuals who populated this upper valley during the Regional Development period (RDP) (between the 11th and 15th centuries CE), to determine their maternal and paternal genetic ancestry. Some mitochondrial and Y-chromosomal haplotypes specific to the Andean region are consistent with an origin in the highlands of Central Andes. On the other hand, a significant genetic affinity with contemporary admixed communities of the Chaco area was detected. Expectedly, recent demographic events, such as the expansion of the Inca Empire or the European colonization, have changed the original mitochondrial gene pool of the ancient Humahuaca Valley community. Finally, we identified a particular geographical organization of the prehispanic populations of Northwestern Argentina. Our results suggest that the communities of the region were divided between two different spheres of interaction, which is consistent with assumptions made by means of craniometric traits.

Ancient DNA recovered from 21 individuals excavated from burial sites in the Pampa Grande (PG) region (Salta province) of North-Western Argentina (NWA) was analyzed using various genetic markers (mitochondrial DNA, autosomal STRs, and Y chromosomal STRs). The results were compared to ancient and modern DNA from various populations in the Andean and North Argentinean regions, with the aim of establishing their relationships with PG. The mitochondrial haplogroup frequencies described (11% A, 47% B, and 42% D) presented values comparable to those found for the ancient Andean populations from Peru and San Pedro de Atacama. On the other hand, mitochondrial and Y chromosomal haplotypes were specific to PG, as they did not match any other of the South American populations studied. The described genetic diversity indicates homogeneity in the genetic structure of the ancient Andean populations, which was probably facilitated by the intense exchange network in the Andean zone, in particular among Tiwanaku, San Pedro de Atacama, and NWA. The discovery of haplotypes unique to PG could be due to a loss of genetic diversity caused by recent events affecting the autochthonous populations (establishment of the Inca Empire in the region, colonization by the Europeans).

Kinship testing and identification of human remains in forensic and anthropological fields is commonly based on the analysis of short tandem repeats (STRs) or more seldom single nucleotide polymorphisms (SNPs). In this study, another type of genetic variations, insertion/deletion polymorphisms (indels) was used through the DIPplex indels typing kit (Qiagen) for such purpose. The objective was to evaluate the performance of the assay for the analysis of ancient DNA samples as well as the informativeness of the kit on kinship investigation. Although some limitations have been noticed, this work shows that indels are well suited for the analysis of degraded samples and that they might be an interesting strategy in addition to STRs typing.