26 results on '"Falcon F"'
Search Results
2. Prediction of gene regulatory networks using differential expression of cDNA microarray data.
- Author
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Kuei-Chung Shih, Rong-Ming Chen, Rouh-Mei Hu, Falcon F. M. Liu, Hung-Kuang Chen, and Jeffrey J. P. Tsai
- Published
- 2004
- Full Text
- View/download PDF
3. FMGA: Finding Motifs by Genetic Algorithm.
- Author
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Falcon F. M. Liu, Jeffrey J. P. Tsai, Rong-Ming Chen, S. N. Chen, and S. H. Shih
- Published
- 2004
- Full Text
- View/download PDF
4. A Framework for Cancer-Related Genes Mining over the Internet.
- Author
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Jeffrey J. P. Tsai, Jan-Gowth Chang, S. H. Shih, Rong-Ming Chen, Han-Wen Hsiao, Rouh-Mei Hu, S. N. Chen, M. M. Lee, Falcon F. M. Liu, and Wen-Ling Chan
- Published
- 2003
- Full Text
- View/download PDF
5. 163 Cervical adenocarcinoma: clinical implications of the risk stratification system (silva system)
- Author
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Devoto, G, primary, Falcon, F, additional, Garcia Kamermann, F, additional, Alessandria, S, additional, Lange, J, additional, Torres, G, additional, Tatti, S, additional, and Bermudez, A, additional
- Published
- 2019
- Full Text
- View/download PDF
6. Control de calidad en imagen por resonancia magnética: Evaluación de parámetros de calidad en protocolos de neuroimagen
- Author
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Carlos Falcon F and Gonzalo Araya R
- Subjects
Control de calidad ,Resonancia magnética funcional ,Maniquíes ,Radiology, Nuclear Medicine and imaging ,Neuroimagen ,Imagen tensor de difusión (DTI) - Abstract
La resonancia magnética juega un rol muy importante en neuroimagen debido al desarrollo de secuencias que permiten conocer aspectos estructurales y funcionales del cerebro, tales como la DTI y la resonancia magnética funcional. El análisis de las imágenes en neuroimagen es de carácter cuantitativo, esto requiere que las imágenes sean de una elevada calidad. Con el fin de asegurar la obtención de esta elevada calidad de imagen requerida se ha elaborado un protocolo de control de calidad exclusivamente diseñado para neuroimagen. Este protocolo abarca la evaluación de 5 parámetros de calidad: exactitud geométrica, uniformidad de imagen, SNR, posición del corte y espesor del corte. Se han adquirido las imágenes por resonancia magnética de 3 maniquíes, analizando las imágenes de acuerdo a la metodología propuesta para cada parámetro. Los resultados han sido variados, en algunos parámetros se han obtenido resultados satisfactorios y en otros no. Se recomienda llevar a cabo este protocolo propuesto respetando la metodología y tomando en cuenta las consideraciones que se citan en este trabajo.
- Published
- 2015
7. Control de calidad en imagen por resonancia magnética: Evaluación de parámetros de calidad en protocolos de neuroimagen
- Author
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Araya R, Gonzalo and Falcon F, Carlos
- Subjects
Quality Control ,Control de calidad ,Resonancia magnética funcional ,Neuroimaging ,Maniquíes ,Mannequins ,Neuroimagen ,Diffusion tensor image (DTI) ,Functional magnetic resonance ,Imagen tensor de difusión (DTI) - Abstract
La resonancia magnética juega un rol muy importante en neuroimagen debido al desarrollo de secuencias que permiten conocer aspectos estructurales y funcionales del cerebro, tales como la DTI y la resonancia magnética funcional. El análisis de las imágenes en neuroimagen es de carácter cuantitativo, esto requiere que las imágenes sean de una elevada calidad. Con el fin de asegurar la obtención de esta elevada calidad de imagen requerida se ha elaborado un protocolo de control de calidad exclusivamente diseñado para neuroimagen. Este protocolo abarca la evaluación de 5 parámetros de calidad: exactitud geométrica, uniformidad de imagen, SNR, posición del corte y espesor del corte. Se han adquirido las imágenes por resonancia magnética de 3 maniquíes, analizando las imágenes de acuerdo a la metodología propuesta para cada parámetro. Los resultados han sido variados, en algunos parámetros se han obtenido resultados satisfactorios y en otros no. Se recomienda llevar a cabo este protocolo propuesto respetando la metodología y tomando en cuenta las consideraciones que se citan en este trabajo. Magnetic resonance imaging (MRI) plays an important role in neuroimaging due to the development of sequences that provide insight into structural and functional aspects of the brain, such as DTI and functional magnetic resonance (fMRI). Analysis of the images in neuroimaging is of a quantitative nature, which requires that the images be of a high quality. To ensure delivery of this required high quality image, a quality control protocol designed exclusively for neuroimaging has been developed. This protocol covers the evaluation of 5 quality parameters: geometric accuracy, image uniformity, SNR, slice position and slice thickness. MRI images were acquired of 3 mannequins, analyzing the images according to the methodology proposed for each parameter. The results have been mixed, in some parameters results obtained have been satisfactory and in others not. It is recommended that this proposed protocol be carried out respecting the methodology and taking into account the considerations cited in this article.
- Published
- 2015
8. A SOFTWARE ARCHITECTURE FOR FINDING MOTIFS USING GENETIC ALGORITHM
- Author
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Jeffrey J. P. Tsai, Falcon F. M. Liu, and Rong-Ming Chen
- Subjects
Engineering ,Computer Networks and Communications ,business.industry ,Computation ,Crossover ,computer.software_genre ,Computer Graphics and Computer-Aided Design ,symbols.namesake ,Software ,Artificial Intelligence ,Genetic algorithm ,symbols ,Consensus sequence ,Data mining ,business ,Software architecture ,Algorithm ,computer ,Gibbs sampling - Abstract
In the era of post-genomics, almost all the genes have been sequenced and enormous amount of data have been generated. Hence, to mine useful information from these data is a very important topic. In this paper, we present a software architecture for finding motifs using genetic algorithm (GA). The new approach can find potential motifs in the regions located from the -2000 bp upstream to +1000 bp downstream of transcription start site (TSS). The mutation in the genetic algorithm is performed using position weight matrices to reserve the completely conserved positions. The crossover in the GA is implemented with specially-designed gap penalties to produce an optimal child pattern. We also present a rearrangement method based on position weight matrices to avoid the presence of a very stable local minimum that may be difficult for operators to generate the optimal pattern. The predicted results obtained from our approach are more accurate than that of Gibbs sampler and we spend less computation time than MEME.
- Published
- 2005
9. Control de calidad en imagen por resonancia magnética: Evaluación de parámetros de calidad en protocolos de neuroimagen
- Author
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Gonzalo Araya R and Carlos Falcon F
- Subjects
control de calidad ,imagen tensor de difusión (dti) ,maniquíes ,neuroimagen ,resonancia magnética funcional ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Medical technology ,R855-855.5 - Abstract
La resonancia magnética juega un rol muy importante en neuroimagen debido al desarrollo de secuencias que permiten conocer aspectos estructurales y funcionales del cerebro, tales como la DTI y la resonancia magnética funcional. El análisis de las imágenes en neuroimagen es de carácter cuantitativo, esto requiere que las imágenes sean de una elevada calidad. Con el fin de asegurar la obtención de esta elevada calidad de imagen requerida se ha elaborado un protocolo de control de calidad exclusivamente diseñado para neuroimagen. Este protocolo abarca la evaluación de 5 parámetros de calidad: exactitud geométrica, uniformidad de imagen, SNR, posición del corte y espesor del corte. Se han adquirido las imágenes por resonancia magnética de 3 maniquíes, analizando las imágenes de acuerdo a la metodología propuesta para cada parámetro. Los resultados han sido variados, en algunos parámetros se han obtenido resultados satisfactorios y en otros no. Se recomienda llevar a cabo este protocolo propuesto respetando la metodología y tomando en cuenta las consideraciones que se citan en este trabajo.
- Full Text
- View/download PDF
10. Diagnóstico de la atención psicoterapéutica a pacientes adictos ingresados en el Hospital Pediátrico Provincial de Camagüey
- Author
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Roldán Soler, Yuleidy Anier, Falcón Fariñas, Irma Niurka, Borges Torres, Osana, and Caballero Giraldo, Olga Lilia
- Subjects
adolescentes ,consumo de drogas ,protocolo de actuación ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 ,Social sciences (General) ,H1-99 - Abstract
En la actualidad las drogas están consideradas como un problema social. Los adolescentes constituyen uno de los grupos más vulnerables ante su consumo. El trabajo tuvo como objetivo diagnosticar las principales debilidades en el tratamiento del paciente ingresado por consumo de drogas en el Hospital Pediátrico de Camagüey. Se utilizó la metodología cuanticualitativa mediante métodos teóricos y empíricos. Se trabajó con un total de 30 empleados, 16 pacientes ingresados durante el período evaluado, así como con 16 familiares. La muestra total estuvo integrada por 62 personas. Los resultados obtenidos en el diagnóstico demostraron que existen limitaciones en la atención integral de los adolescentes ingresados por consumo de drogas. Los señalamientos más importantes se centraron en el logro del compromiso del paciente y en la necesidad de crear un protocolo de actuación con temas previamente definidos.
- Published
- 2021
11. Control de calidad en imagen por resonancia magnética: Evaluación de parámetros de calidad en protocolos de neuroimagen
- Author
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Araya R, Gonzalo, primary and Falcon F, Carlos, additional
- Published
- 2015
- Full Text
- View/download PDF
12. Patrones de consumo de drogas en adolescentes ingresados en el Hospital Pediátrico Provincial de Camagüey
- Author
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Roldán Soler, Yuleidy Anier, Pérez Rodríguez, Rubén Demetrio, Falcón Fariñas, Irma Niurka, and Borges Torres, Osana Isabel
- Subjects
consumo de drogas ,adolescentes ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 ,Social sciences (General) ,H1-99 - Abstract
Las drogas por sus graves consecuencias están consideradas como un problema social. Los adolescentes son uno de los grupos vulnerables ante su consumo. El trabajo tuvo como objetivo caracterizar los patrones de consumo de drogas en adolescentes ingresados en la Unidad de Intervención en Crisis del Hospital Pediátrico Provincial de Camagüey durante el periodo 2015-2019. Se utilizó la metodología cuanticualitativa mediante métodos teóricos y empíricos. Para la recolección de los datos fue preciso la revisión de las Historias Clínicas. La investigación comprendió una muestra de 83 adolescentes. El estudio posibilitó determinar el aumento del número de ingresos por consumo de sustancias desde el año 2016 hasta 2019 y el grupo de edades más numeroso estuvo conformado entre 16 y 18 años. La curiosidad, el placer y la influencia del grupo de amigos resultaron los principales motivos para las adicciones.
- Published
- 2021
13. Melanocytes and melanin represent a first line of innate immunity against Candida albicans
- Author
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Tapia, C. V., primary, Falconer, M., additional, Tempio, F., additional, Falcon, F., additional, Lopez, M., additional, Fuentes, M., additional, Alburquenque, C., additional, Amaro, J., additional, Bucarey, S. A., additional, and Nardo, A. D., additional
- Published
- 2014
- Full Text
- View/download PDF
14. A SOFTWARE ARCHITECTURE FOR FINDING MOTIFS USING GENETIC ALGORITHM
- Author
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CHEN, R. M., primary, LIU, FALCON F. M., additional, and TSAI, JEFFREY J. P., additional
- Published
- 2005
- Full Text
- View/download PDF
15. [GM1 gangliosidosis, type I, Landing's disease. Presentation of a case and review of the literature]
- Author
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Alonso Falcon, F. and Jesus Lopez-Herce
- Subjects
Isoenzymes ,Male ,Genetic Carrier Screening ,Prenatal Diagnosis ,Humans ,Infant ,G(M1) Ganglioside ,Gangliosidoses ,beta-Galactosidase - Abstract
A case of type 1 GM1 gangliosidosis, also called Norman-Landing disease is reported. The patient' was a nine months old boy who presented psychomotor retardation since birth, coarse facies, hepatomegaly and macular cherry red spot. Roentgenographic findings were those of dysostosis multiplex. Bone marrow smear showed type 1 Gasser's cells, as it occurs in the storage diseases. The infant presented a severe B-galactosidase deficiency and died at the age of ten months. Recent advances in pathogenesis, diagnosis and future therapy are discussed.
- Published
- 1984
16. Influence of microgravity on crystallization front topography
- Author
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Alamino, D., primary and Falcon, F. L., additional
- Published
- 1987
- Full Text
- View/download PDF
17. Transposon waves at the water-to-land transition.
- Author
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Falcon F, Tanaka EM, and Rodriguez-Terrones D
- Subjects
- DNA Transposable Elements, Genomics, Humans, Animals, Genome, Biological Evolution
- Abstract
The major transitions in vertebrate evolution are associated with significant genomic reorganizations. In contrast to the evolutionary processes that occurred at the origin of vertebrates or prior to the radiation of teleost fishes, no whole-genome duplication events occurred during the water-to-land transition, and it remains an open question how did genome dynamics contribute to this prominent evolutionary event. Indeed, the recent sequencing of sarcopterygian and amphibian genomes has revealed that the extant lineages immediately preceding and succeeding this transition harbor an exceptional number of transposable elements and it is tempting to speculate that these sequences might have catalyzed the adaptations that enabled vertebrates to venture into land. Here, we review the genome dynamics associated with the major transitions in vertebrate evolution and discuss how the highly repetitive genomic landscapes revealed by recent efforts to characterize the genomes of amphibians and sarcopterygians argue for turbulent genome dynamics occurring before the water-to-land transition and possibly enabling it., Competing Interests: Declaration of Competing Interest None., (Copyright © 2023. Published by Elsevier Ltd.)
- Published
- 2023
- Full Text
- View/download PDF
18. Maple syrup urine disease: Characteristics of diagnosis and treatment in 45 patients in Chile.
- Author
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Medina MF, Castro G, Falcon F, Cabello JF, Faundes V, Ruffato D, Salazar MF, Arias C, Peñaloza F, De La Parra A, and Cornejo V
- Subjects
- 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) genetics, Alleles, Chile, Humans, Retrospective Studies, Maple Syrup Urine Disease diagnosis, Maple Syrup Urine Disease genetics, Maple Syrup Urine Disease therapy
- Abstract
Maple urine syrup disease (MSUD) is an autosomal recessive disorder characterized by deficient activity of the branched-chain alpha ketoacid dehydrogenase (BCKAD) enzymatic complex due to biallelic variants in the alpha (BCKDHA) or beta (BCKDHB) subunits or the acyltransferase component (DBT). Treatment consists in leucine (LEU), isoleucine (ILE), and valine (VAL) (branched-chain amino acids) dietary restriction and strict metabolic control. to determine the characteristics of the Chilean cohort with MSUD currently in follow-up at Instituto de Nutrición y Tecnología de los Alimentos, during the 1990-2017 period Retrospective analytical study in 45 MSUD cases. Measured: biochemical parameters (LEU, ILE, and VAL), anthropometric evaluation, and neurocognitive development. In 18 cases undergoing genetic study were analyzed according to the gene and protein location, number of affected alleles, and type of posttranslational modification affected. Then, 45 patients with MSUD diagnosis were identified during the period: 37 were alive at the time of the study. Average diagnosis age was 71 ± 231 days. Average serum diagnosis LEU concentrations: 1.463 ± 854.1 μmol/L, VAL 550 ± 598 μmol/L and ILE 454 ± 458 μmol/L. BCKDHB variants explain 89% cases, while BCKDHA and DBT variants explain 5.5% of cases each. Variants p.Thr338Ile in BCKDHA, p.Pro240Thr and p.Ser342Asn in BCKDHB have not been previously reported in literature. Average serum follow-up LEU concentrations were 252.7 ± 16.9 μmol/L in the <5 years group and 299 ± 123.2 μmol/L in ≥5 years. Most cases presented some degree of developmental delay. Early diagnosis and treatment is essential to improve the long-term prognosis. Frequent blood LEU measurements are required to optimize metabolic control and to establish relationships between different aspects analyzed., (© 2021 Wiley Periodicals LLC.)
- Published
- 2021
- Full Text
- View/download PDF
19. The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci.
- Author
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Schloissnig S, Kawaguchi A, Nowoshilow S, Falcon F, Otsuki L, Tardivo P, Timoshevskaya N, Keinath MC, Smith JJ, Voss SR, and Tanaka EM
- Subjects
- Animals, Chromosomes genetics, Genetic Loci, Transcriptome, Ambystoma mexicanum genetics, Evolution, Molecular, Genome
- Abstract
Vertebrates harbor recognizably orthologous gene complements but vary 100-fold in genome size. How chromosomal organization scales with genome expansion is unclear, and how acute changes in gene regulation, as during axolotl limb regeneration, occur in the context of a vast genome has remained a riddle. Here, we describe the chromosome-scale assembly of the giant, 32 Gb axolotl genome. Hi-C contact data revealed the scaling properties of interphase and mitotic chromosome organization. Analysis of the assembly yielded understanding of the evolution of large, syntenic multigene clusters, including the Major Histocompatibility Complex (MHC) and the functional regulatory landscape of the Fibroblast Growth Factor 8 ( Axfgf8 ) region. The axolotl serves as a primary model for studying successful regeneration., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2021
- Full Text
- View/download PDF
20. Chasing language through the brain: Successive parallel networks.
- Author
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Zheng W, Minama Reddy GK, Dai F, Chandramani A, Brang D, Hunter S, Kohrman MH, Rose S, Rossi M, Tao J, Wu S, Byrne R, Frim DM, Warnke P, and Towle VL
- Subjects
- Adolescent, Adult, Brain Mapping, Cerebral Cortex diagnostic imaging, Child, Electrocorticography, Female, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Nerve Net diagnostic imaging, Young Adult, Cerebral Cortex physiology, Language, Nerve Net physiology
- Abstract
Objective: To describe the spatio-temporal dynamics and interactions during linguistic and memory tasks., Methods: Event-related electrocorticographic (ECoG) spectral patterns obtained during cognitive tasks from 26 epilepsy patients (aged: 9-60 y) were analyzed in order to examine the spatio-temporal patterns of activation of cortical language areas. ECoGs (1024 Hz/channel) were recorded from 1567 subdural electrodes and 510 depth electrodes chronically implanted over or within the frontal, parietal, occipital and/or temporal lobes as part of their surgical work-up for intractable seizures. Six language/memory tasks were performed, which required responding verbally to auditory or visual word stimuli. Detailed analysis of electrode locations allowed combining results across patients., Results: Transient increases in induced ECoG gamma power (70-100 Hz) were observed in response to hearing words (central superior temporal gyrus), reading text and naming pictures (occipital and fusiform cortex) and speaking (pre-central, post-central and sub-central cortex)., Conclusions: Between these activations there was widespread spatial divergence followed by convergence of gamma activity that reliably identified cortical areas associated with task-specific processes., Significance: The combined dataset supports the concept of functionally-specific locally parallel language networks that are widely distributed, partially interacting in succession to serve the cognitive and behavioral demands of the tasks., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 International Federation of Clinical Neurophysiology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
21. Transcriptional profiling of the CAM plant Agave salmiana reveals conservation of a genetic program for regeneration.
- Author
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Cervantes-Pérez SA, Espinal-Centeno A, Oropeza-Aburto A, Caballero-Pérez J, Falcon F, Aragón-Raygoza A, Sánchez-Segura L, Herrera-Estrella L, Cruz-Hernández A, and Cruz-Ramírez A
- Subjects
- Crassulaceae genetics, Cytokinins metabolism, Gene Expression Profiling methods, Gene Expression Regulation, Plant genetics, High-Throughput Nucleotide Sequencing, Indoleacetic Acids metabolism, Organogenesis, Plant physiology, Plant Growth Regulators genetics, Plant Leaves genetics, Plant Leaves growth & development, Transcriptome genetics, Agave genetics, Organogenesis, Plant genetics, Regeneration genetics
- Abstract
In plants, the best characterized plant regeneration process is de novo organogenesis. This type of regeneration is characterized by the formation of a multicellular structure called callus. Calli are induced via phytohormone treatment of plant sections. The callus formation in plants like Agave species with Crassulacean Acid Metabolism (CAM) is poorly studied. In this study, we induced callus formation from Agave salmiana leaves and describe cell arrangement in this tissue. Moreover, we determined and analyzed the transcriptional program of calli, as well as those of differentiated root and leaf tissues, by using RNA-seq. We were able to reconstruct 170,844 transcripts of which 40,644 have a full Open Reading Frame (ORF). The global profile obtained by Next Generation Sequencing (NGS) reveals that several callus-enriched protein coding transcripts are orthologs of previously reported factors highly expressed in Arabidopsis calli. At least 62 genes were differentially expressed in Agave calli, 50 of which were up-regulated. Several of these are actively involved in the perception of, and response to, auxin and cytokinin. Not only are these the first results for the A. salmiana callus, but they provide novel data from roots and leaves of this Agave species, one of the largest non-tree plants in nature., (Copyright © 2018. Published by Elsevier Inc.)
- Published
- 2018
- Full Text
- View/download PDF
22. Author Correction: The axolotl genome and the evolution of key tissue formation regulators.
- Author
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Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, and Myers EW
- Abstract
In the originally published version of this Article, the sequenced axolotl strain (the homozygous white mutant) was denoted as 'D/D' rather than 'd/d' in Fig. 1a and the accompanying legend, the main text and the Methods section. The original Article has been corrected online.
- Published
- 2018
- Full Text
- View/download PDF
23. The axolotl genome and the evolution of key tissue formation regulators.
- Author
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Nowoshilow S, Schloissnig S, Fei JF, Dahl A, Pang AWC, Pippel M, Winkler S, Hastie AR, Young G, Roscito JG, Falcon F, Knapp D, Powell S, Cruz A, Cao H, Habermann B, Hiller M, Tanaka EM, and Myers EW
- Subjects
- Animals, DNA, Intergenic genetics, Genes, Essential genetics, Homeodomain Proteins genetics, Introns genetics, Male, Mice, PAX3 Transcription Factor genetics, PAX7 Transcription Factor genetics, Picea genetics, Pinus genetics, Regeneration genetics, Retroelements genetics, Terminal Repeat Sequences genetics, Ambystoma mexicanum genetics, Evolution, Molecular, Genome genetics, Genomics
- Abstract
Salamanders serve as important tetrapod models for developmental, regeneration and evolutionary studies. An extensive molecular toolkit makes the Mexican axolotl (Ambystoma mexicanum) a key representative salamander for molecular investigations. Here we report the sequencing and assembly of the 32-gigabase-pair axolotl genome using an approach that combined long-read sequencing, optical mapping and development of a new genome assembler (MARVEL). We observed a size expansion of introns and intergenic regions, largely attributable to multiplication of long terminal repeat retroelements. We provide evidence that intron size in developmental genes is under constraint and that species-restricted genes may contribute to limb regeneration. The axolotl genome assembly does not contain the essential developmental gene Pax3. However, mutation of the axolotl Pax3 paralogue Pax7 resulted in an axolotl phenotype that was similar to those seen in Pax3
-/- and Pax7-/- mutant mice. The axolotl genome provides a rich biological resource for developmental and evolutionary studies.- Published
- 2018
- Full Text
- View/download PDF
24. Transcriptional landscapes of Axolotl (Ambystoma mexicanum).
- Author
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Caballero-Pérez J, Espinal-Centeno A, Falcon F, García-Ortega LF, Curiel-Quesada E, Cruz-Hernández A, Bako L, Chen X, Martínez O, Alberto Arteaga-Vázquez M, Herrera-Estrella L, and Cruz-Ramírez A
- Subjects
- Ambystoma mexicanum physiology, Animals, Female, Gene Library, Gene Ontology, Humans, MicroRNAs biosynthesis, MicroRNAs genetics, Organ Specificity, Principal Component Analysis, RNA, Messenger biosynthesis, RNA, Small Interfering genetics, Sequence Analysis, RNA, Species Specificity, Ambystoma mexicanum genetics, Gene Expression Regulation, RNA, Messenger genetics, Regeneration genetics, Transcription, Genetic, Transcriptome
- Abstract
The axolotl (Ambystoma mexicanum) is the vertebrate model system with the highest regeneration capacity. Experimental tools established over the past 100 years have been fundamental to start unraveling the cellular and molecular basis of tissue and limb regeneration. In the absence of a reference genome for the Axolotl, transcriptomic analysis become fundamental to understand the genetic basis of regeneration. Here we present one of the most diverse transcriptomic data sets for Axolotl by profiling coding and non-coding RNAs from diverse tissues. We reconstructed a population of 115,906 putative protein coding mRNAs as full ORFs (including isoforms). We also identified 352 conserved miRNAs and 297 novel putative mature miRNAs. Systematic enrichment analysis of gene expression allowed us to identify tissue-specific protein-coding transcripts. We also found putative novel and conserved microRNAs which potentially target mRNAs which are reported as important disease candidates in heart and liver., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
25. Erdheim-Chester disease: atypical presentation of a rare disease.
- Author
-
Calandra CR, Bustos A, Falcon F, and Arakaki N
- Subjects
- Adult, DNA Mutational Analysis, Diplopia etiology, Erdheim-Chester Disease physiopathology, Erdheim-Chester Disease therapy, Humans, Male, Neuroimaging, Rare Diseases, Recombinant Proteins therapeutic use, Treatment Outcome, Trismus etiology, Antiviral Agents therapeutic use, Cytoreduction Surgical Procedures methods, Erdheim-Chester Disease diagnosis, Histiocytes pathology, Interferon-alpha therapeutic use, Polyethylene Glycols therapeutic use, Tomography, X-Ray Computed
- Abstract
We report the clinical case of an adult patient referred to our hospital because of trismus due to a tumour in the right infratemporal and pterygomaxillary fossa. He referred hyporexia, weight loss and right trigeminal neuralgia. On physical examination, he had trismus and diplopia. On neuroimaging, the tumour invaded the central nervous system affecting the right temporal lobe and orbit, and the sellar region. Tumour biopsy revealed foamy histiocytes and isolated giant multinuclear cells immunoreactive to CD68 and negative to CD1a and S100. A diagnosis of Erdheim-Chester disease was made. Non-evidence of large bone involvement was found in neither plain radiographs nor Technetium 99 m bone scintigraphy. BRAFV600E mutation analysis was negative. Because of raised intracranial pressure, a debulking surgery of the intracranial histiocytic process was performed. The patient improved his symptoms and remains clinically stable after 12 months of treatment with pegylated interferon-α-2a 180 µg/weekly., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Ltd (unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.)
- Published
- 2017
- Full Text
- View/download PDF
26. Benzene-1,3,5-tri-carb-oxy-lic acid-pyridinium-2-olate (1/3).
- Author
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Campos-Gaxiola JJ, Zamora Falcon F, Corral Higuera R, Höpfl H, and Cruz-Enríquez A
- Abstract
The asymmetric unit of the title compound, C9H6O6·3C5H5NO, contains one benzene-1,3,5-tri-carb-oxy-lic acid mol-ecule (BTA) and three pyridin-2-ol mol-ecules each present in the zwitterion form. In the crystal, these entities are linked through O-H⋯O(-) and N(+)-H⋯O(-) hydrogen bonds, forming sheets parallel to (10-1). These layers contain macrocyclic rings of composition [BTA]2[pyol]6 and with graph-set notation R (6) 8(44), which are stacked along c through π-π inter-actions [inter-centroid distances = 3.536 (2)-3.948 (3) Å]. They are inter-connected by N(+)-H⋯O(-) hydrogen-bonded chains of pyridin-2-ol mol-ecules running parallel to c, forming a three-dimensional network. There are also C-H⋯O hydrogen bonds present which reinforce the three-dimensional structure.
- Published
- 2014
- Full Text
- View/download PDF
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