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20 pages, 3 tables, 5 figures.-- Samantha Andrzejaczek ... et al.-- Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC), Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and share similar risk to anthropogenic threats that vary on a vertical gradient. We highlight the critical next steps toward incorporating vertical movement into global management and monitoring strategies for elasmobranchs, emphasizing the need to address geographic and taxonomic biases in deployments and to concurrently consider both horizontal and vertical movements, Data analysis was funded by the Bertarelli Foundation through the Marine Science program through grants to D.J.C., B.A.B., and S.A. D.J.C. is also funded through Research England, UK. S.A. and B.A.B. thank the Moore Foundation and the Packard Foundation. F.G.-M. thanks the Instituto Politecnico Nacional for fellowships (COFAA, EDI). S.B.W. thanks funding from the Darwin Initiative (DPLUS046). A.D.M.D. acknowledges funding from the Research and Conservation Budget at Georgia Aquarium, including philanthropic gifts from several anonymous donors. K.F. acknowledges funding from the Rolex Awards for Enterprise and the Whitley Fund for Nature

Australian cownose rays (Rhinoptera neglecta) and whitespotted eagle rays (Aetobatus ocellatus) are large myliobatiform rays that co-occur off temperate eastern Australia. Here, we performed stable-isotope analyses (δ

Bio-logging data obtained by tagging animals are key to addressing global conservation challenges. However, the many thousands of existing bio-logging datasets are not easily discoverable, universally comparable, nor readily accessible through existing repositories and across platforms, slowing down ecological research and effective management. A set of universal standards is needed to ensure discoverability, interoperability and effective translation of bio-logging data into research and management recommendations. We propose a standardisation framework adhering to existing data principles (FAIR: Findable, Accessible, Interoperable and Reusable; and TRUST: Transparency, Responsibility, User focus, Sustainability and Technology) and involving the use of simple templates to create a data flow from manufacturers and researchers to compliant repositories, where automated procedures should be in place to prepare data availability into four standardised levels: (a) decoded raw data, (b) curated data, (c) interpolated data and (d) gridded data. Our framework allows for integration of simple tabular arrays (e.g. csv files) and creation of sharable and interoperable network Common Data Form (netCDF) files containing all the needed information for accuracy-of-use, rightful attribution (ensuring data providers keep ownership through the entire process) and data preservation security. We show the standardisation benefits for all stakeholders involved, and illustrate the application of our framework by focusing on marine animals and by providing examples of the workflow across all data levels, including filled templates and code to process data between levels, as well as templates to prepare netCDF files ready for sharing. Adoption of our framework will facilitate collection of Essential Ocean Variables (EOVs) in support of the Global Ocean Observing System (GOOS) and inter-governmental assessments (e.g. the World Ocean Assessment), and will provide a starting point for broader efforts to establish interoperable bio-logging data formats across all fields in animal ecology., A.M.M.S. was funded by a 2020 Pew Fellowship in Marine Conservation, and also supported by AIMS. C.R. was the recipient of a Radcliffe Fellowship at the Radcliffe Institute for Advanced Study, Harvard University.

COVID-19 restrictions have led to an unprecedented global hiatus in anthropogenic activities, providing a unique opportunity to assess human impact on biological systems. Here, we describe how a national network of acoustic tracking receivers can be leveraged to assess the effects of human activity on animal movement and space use during such global disruptions. We outline variation in restrictions on human activity across Australian states and describe four mechanisms affecting human interactions with the marine environment: 1) reduction in economy and trade changing shipping traffic; 2) changes in export markets affecting commercial fisheries; 3) alterations in recreational activities; and 4) decline in tourism. We develop a roadmap for the analysis of acoustic tracking data across various scales using Australia's national Integrated Marine Observing System (IMOS) Animal Tracking Facility as a case study. We illustrate the benefit of sustained observing systems and monitoring programs by assessing how a 51-day break in white shark (Carcharodon carcharias) cage-diving tourism due to COVID-19 restrictions affected the behaviour and space use of two resident species. This cessation of tourism activities represents the longest break since cage-diving vessels started day trips in this area in 2007. Long-term monitoring of the local environment reveals that the activity space of yellowtail kingfish (Seriola lalandi) was reduced when cage-diving boats were absent compared to periods following standard tourism operations. However, white shark residency and movements were not affected. Our roadmap is globally applicable and will assist researchers in designing studies to assess how anthropogenic activities can impact animal movement and distributions during regional, short-term through to major, unexpected disruptions like the COVID-19 pandemic.

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/., Acoustic telemetry is a principle tool for observing aquatic animals, but coverage over large spatial scales remains a challenge. To resolve this, Australia has implemented the Integrated Marine Observing System’s Animal Tracking Facility which comprises a continental-scale hydrophone array and coordinated data repository. This national acoustic network connects localized projects, enabling simultaneous monitoring of multiple species over scales ranging from 100 s of meters to 1000 s of kilometers. There is a need to evaluate the utility of this national network in monitoring animal movement ecology, and to identify the spatial scales that the network effectively operates over. Cluster analyses assessed movements and residency of 2181 individuals from 92 species, and identified four functional movement classes apparent only through aggregating data across the entire national network. These functional movement classes described movement metrics of individuals rather than species, and highlighted the plasticity of movement patterns across and within populations and species. Network analyses assessed the utility and redundancy of each component of the national network, revealing multiple spatial scales of connectivity influenced by the geographic positioning of acoustic receivers. We demonstrate the significance of this nationally coordinated network of receivers to better reveal intra-specific differences in movement profiles and discuss implications for effective management.

In French Polynesia, both currently recognized manta ray species, Mobula alfredi and M. birostris, are observed. Despite being an important cultural asset and generating significant economic benefits through manta ray watching tourism, published data on the ecology and threats to these species in the region are scarce. Based on an 18-year dataset of sighting records collected by citizen scientists and during two scientific expeditions, this study provides the first insights into the population characteristics and regional distribution of the two manta ray species in French Polynesia. A total of 1347 manta ray photographs (1337 for M. alfredi and 10 for M. birostris) were examined for the period January 2001–December 2017, with photo-identification techniques leading to the successful identification of 317 individual M. alfredi and 10 individual M. birostris throughout the Society, Tuamotu and Marquesas Islands. We provide the first confirmation of sympatric distribution of both species in the Society Islands. Our results highlight strong and long-term site fidelity of M. alfredi individuals to certain aggregation sites (> 9 years for 16 individuals) and reveal some degree of connectivity between populations, with 10 individuals recorded moving between islands located up to 50 km apart. Analysis of photographs of individuals bearing sub-lethal injuries (n = 68) suggests that M. alfredi are more likely to be injured at inhabited islands (Maupiti or Bora Bora; 75% of all injured individuals) than at uninhabited islands, with 75% of injuries related to boat propeller strikes and fishing gear entanglements. Our findings emphasize the need for further research to allow for a comprehensive evaluation of population structure, size and threats to manta rays in this region.

Background Over the past 15 years, the integration of localised passive telemetry networks into centralised data repositories has greatly enhanced our ability to monitor the presence and movements of highly mobile and migratory species. These large-scale networks are now generating big data, allowing meta-analyses across multiple species, locations, and temporal scales. Broad-scale comparisons of animal movement metrics are constrained by the use of diverse analytical techniques among researchers. Accordingly, there is a need for a tool-set to assist in calculating animal movement metrics that can be easily applied to datasets from local studies to large-scale cooperative networks. Results We present a standardised framework and an associated analysis tool-set that facilitates the calculation of a range of activity space and movement metrics for passive telemetry datasets. Application of the tool-set is demonstrated using data from the Integrated Marine Observing System continental-scale network of underwater acoustic receivers. We show how the metrics can: (1) be directly compared among multiple species monitored at multiple sites; (2) be compared among multiple species tagged at a single study site; and (3) assess changes in activity space metrics over time. Conclusions Establishing a framework and tool-set to analyse data from large-scale networks progresses the field of passive telemetry beyond the traditional individual-, species-, or location-centric approaches to facilitate national- or international-scale outputs that better address important questions in the field of movement ecology.

WOS:000440371600009; International audience; Understanding variations in habitat use through time contributes to identification of habitats critical for species survival. Here we used passive acoustic telemetry to examine the residency and site fidelity patterns of the reef manta ray Mobula alfredi at Lady Elliot Island (LEI), a key aggregation site in eastern Australia. Six acoustic receivers were moored around LEI between 2009 and 2012, and 34 acoustic transmitters were deployed on manta rays. All tagged animals returned to this site within their recording period, with some indi viduals visiting the area for up to 23 consecutive days. Using a set of mixed effect models, we analysed the hourly visitation patterns of manta rays in relation to temporal and en vironmental variables. Diel phase and sea temperature showed the strongest effects on the presence of manta rays, with weaker effects detected for wind direction, wind speed and moon illumination. Individuals occupied LEI habitat mostly during daylight hours and in calm weather conditions, which may be linked with behavioural thermoregulation, social inter actions and cleaning activities. Their absence at night may be related to foraging strategies in deeper offshore waters. The effect of sea temperature reflects the greater seasonal occurrence of manta rays at LEI in winter, when temperatures are coolest, potentially in response to regional food availability. The high degree of manta ray site fidelity at aggregation sites underscores the importance of these areas as key daytime habitats for the species. We suggest that conservation measures should prioritise the protection of coastal aggregation habitats from overexploitation and degradation.

The whale shark Rhincodon typus is an endangered, highly migratory species with a wide, albeit patchy, distribution through tropical oceans. Ten aerial survey flights along the southern Mozambican coast, conducted between 2004–2008, documented a relatively high density of whale sharks along a ~200 km stretch of the Inhambane Province, with a pronounced hotspot adjacent to Praia do Tofo. To examine the residency and movement of whale sharks in coastal areas around Praia do Tofo, where they may be more susceptible to gill net entanglement, we tagged 15 juveniles with SPOT5 satellite tags and tracked them for 2–88 days (mean = 27 days) as they dispersed from this area. Sharks travelled between 10 and 2,737 km (mean = 738 km) at a mean horizontal speed of 28 ± 17.1 SD km day-1. While several individuals left shelf waters and travelled across international boundaries, most sharks stayed in Mozambican coastal waters over the tracking period. We tested for whale shark habitat preferences, using sea surface temperature, chlorophyll-a concentration and water depth as variables, by computing 100 random model tracks for each real shark based on their empirical movement characteristics. Whale sharks spent significantly more time in cooler, shallower water with higher chlorophyll-a concentrations than model sharks, suggesting that feeding in productive coastal waters is an important driver of their movements. To investigate what this coastal habitat choice means for their conservation in Mozambique, we mapped gill nets during two dedicated aerial surveys along the Inhambane coast and counted gill nets in 1,323 boat-based surveys near Praia do Tofo. Our results show that, while whale sharks are capable of long-distance oceanic movements, they can spend a disproportionate amount of time in specific areas, such as along the southern Mozambique coast. The increasing use of large-mesh gill nets in this coastal hotspot for whale sharks is likely to be a threat to regional populations of this iconic species.

Our ability to predict species responses to environmental changes relies on accurate records of animal movement patterns. Continental-scale acoustic telemetry networks are increasingly being established worldwide, producing large volumes of information-rich geospatial data. During the last decade, the Integrated Marine Observing System’s Animal Tracking Facility (IMOS ATF) established a permanent array of acoustic receivers around Australia. Simultaneously, IMOS developed a centralised national database to foster collaborative research across the user community and quantify individual behaviour across a broad range of taxa. Here we present the database and quality control procedures developed to collate 49.6 million valid detections from 1891 receiving stations. This dataset consists of detections for 3,777 tags deployed on 117 marine species, with distances travelled ranging from a few to thousands of kilometres. Connectivity between regions was only made possible by the joint contribution of IMOS infrastructure and researcher-funded receivers. This dataset constitutes a valuable resource facilitating meta-analysis of animal movement, distributions, and habitat use, and is important for relating species distribution shifts with environmental covariates.

Partial migration is considered ubiquitous among vertebrates, but little is known about the movements of ocean- odromous apex predators such as sharks, particularly at their range extents. PAT-Mk10 and SPOT5 electronic tags were used to investigate tiger shark (Galeocerdo cuvier) spatial dynamics, site fidelity and habitat use off eastern Australia between April 2007 and May 2013. Of the 18 tags deployed, 15 recorded information on depth and/or temperature, and horizontal movements. Tracking times ranged between four and 408 days, with two recovered pop-up archival tags allow- ing 63 days of high-resolution archived data to be analysed. Overall mean proportions of time-at-depth revealed that G. cuvier spent the majority of time-at-depths of 500 m) occurred mostly

Manta rays (Manta spp.) are plankton-feeding elasmobranchs classified as vulnerable to extinction on the IUCN Red List for Threatened Species. Despite increasing public and scientific interest in manta rays, major knowledge gaps concerning their movement ecology and dispersal capabilities remain. Here, we used pop-off satellite-linked archival transmitting tags to examine the horizontal movements and habitat use patterns of reef manta rays (M. alfredi) departing Lady Elliot Island in the southern Great Barrier Reef, Australia. Tagged individuals moved across a latitudinal range of 1035 km, travelling up to 2441 km in 118 d, diving down to 294.5 m and venturing up to 155 km off the continental shelf. Using random walk simulations, we showed that manta rays spent significantly more time in an offshore region characterised by the mesoscale cyclonic Capricorn Eddy than would be expected by chance. A behaviour-switching state-space model suggested this area to be an important foraging ground for M. alfredi off eastern Australia. We document the movements of 1 individual using offshore waters between 2 known aggregation regions off eastern Australia. Reef manta rays thus not only occupy inshore continental shelf and shelf-edge waters but also use offshore environments to exploit productive hotspots and travel long distances. Our findings highlight the need to better understand their movement ecology for effective management.

The reef manta ray Manta alfredi aggregates at several sites along the east coast of Australia. Photographic identification and mark–recapture methods were used to report on the site affinity, size and structure of this population of M. alfredi. A total of 716 individuals were identified in 1982–2012, including 636 at Lady Elliot Island (LEI), southern Great Barrier Reef. Over 60 % of individuals identified were resighted at least once during the study period. Multiple resightings within and among years imply a high degree of site affinity by individuals to aggregation sites. One individual was sighted 11 times at LEI over a 30-yr period. The sex ratio of this population was significantly biased towards females (1.2:1 female-to-male ratio), and females were more commonly resighted than males. Robust design population models were used to estimate the population size of the winter aggregation at LEI over a 4-yr period. The models estimated up to 456 (95 % CI 399–535) M. alfredi individuals in the population within one winter season and a high annual apparent survival. This study demonstrated that waters around LEI form a key aggregation site for a large portion of the M. alfredi population in east Australian waters.

Fatty acid (FA) signature analysis has been increasingly used to assess dietary preferences and trophodynamics in marine animals. We investigated FA signatures of connective tissue of the whale shark Rhincodon typus and muscle tissue of the reef manta ray Manta alfredi. We found high levels of n-6 polyunsaturated fatty acids (PUFA), dominated by arachidonic acid (20:4n-6; 12–17 % of total FA), and comparatively lower levels of the essential n-3 PUFA—eicosapentaenoic acid (20:5n-3; ~1 %) and docosahexaenoic acid (22:6n-3; 3–10 %). Whale sharks and reef manta rays are regularly observed feeding on surface aggregations of coastal crustacean zooplankton during the day, which generally have FA profiles dominated by n-3 PUFA. The high levels of n-6 PUFA in both giant elasmobranchs raise new questions about the origin of their main food source.

International audience; Large tropical and sub-tropical marine animals must meet their energetic requirements in a largely oligotrophic environment. Many planktivorous elasmobranchs, whose thermal ecologies prevent foraging in nutrient-rich polar waters, aggregate seasonally at predictable locations throughout tropical oceans where they are observed feeding. Here we investigate the foraging and oceanographic environment around Lady Elliot Island, a known aggregation site for reef manta rays Manta alfredi in the southern Great Barrier Reef. The foraging behaviour of reef manta rays was analysed in relation to zooplankton populations and local oceanography, and compared to long-term sighting records of reef manta rays from the dive operator on the island. Reef manta rays fed at Lady Elliot Island when zooplankton biomass and abundance were significantly higher than other times. The critical prey density threshold that triggered feeding was 11.2 mg m(-3) while zooplankton size had no significant effect on feeding. The community composition and size structure of the zooplankton was similar when reef manta rays were feeding or not, with only the density of zooplankton changing. Higher zooplankton biomass was observed prior to low tide, and long-term (similar to 5 years) sighting data confirmed that more reef manta rays are also observed feeding during this tidal phase than other times. This is the first study to examine prey availability at an aggregation site for reef manta rays and it indicates that they feed in locations and at times of higher zooplankton biomass.

The Mobulidae are zooplanktivorous elasmobranchs comprising two recognized species of manta rays (Manta spp.) and nine recognized species of devil rays (Mobula spp.). They are found circumglobally in tropical, subtropical and temperate coastal waters. Although mobulids have been recorded for over 400 years, critical knowledge gaps still compromise the ability to assess the status of these species. On the basis of a review of 263 publications, a comparative synthesis of the biology and ecology of mobulids was conducted to examine their evolution, taxonomy, distribution, population trends, movements and aggregation, reproduction, growth and longevity, feeding, natural mortality and direct and indirect anthropogenic threats. There has been a marked increase in the number of published studies on mobulids since c. 1990, particularly for the genus Manta, although the genus Mobula remains poorly understood. Mobulid species have many common biological characteristics although their ecologies appear to be species-specific, and sometimes region-specific. Movement studies suggest that mobulids are highly mobile and have the potential to rapidly travel large distances. Fishing pressure is the major threat to many mobulid populations, with current levels of exploitation in target fisheries unlikely to be sustainable. Advances in the fields of population genetics, acoustic and satellite tracking, and stable-isotope and fatty-acid analyses will provide new insights into the biology and ecology of these species. Future research should focus on the uncertain taxonomy of mobulid species, the degree of overlap between their large-scale movement and human activities such as fisheries and pollution, and the need for management of inter-jurisdictional fisheries in developing nations to ensure their long-term sustainability. Closer collaboration among researchers worldwide is necessary to ensure standardized sampling and modelling methodologies to underpin global population estimates and status.

We present the first photographic evidence of the presence of the giant manta ray Manta birostris in east Australian waters. Two individuals were photographed off Montague Island in New South Wales and off the north east coast of Tasmania, during summer 2012 and 2014, respectively. These sightings confirm previous unverified reports on the species occurrence and extending the range of M. birostris to 40ºS. We discuss these findings in the context of the species’ migratory ecology, the regional oceanography along the south eastern Australian coastline and local productivity events.

The preserved stomach contents from the manta ray, collected in 1935, that provided the basis for the 2009 taxonomic resurrection of the species Manta alfredi, were examined. The majority of the material comprised calanoid copepods (61.7%) and trypanorhynch cestodes (34.6%), with minor contributions by arrow worms, a barnacle larva and a nematode. Comparison of the size-frequency distributions of stomach contents with that of zooplankton from the Great Barrier Reef region suggest that this manta ray preferentially ingested large copepods, or that the filter mechanism used to extract prey from the water was selective for prey items over 0.8mm in length. This is the first description of the diet of M. alfredi from stomach contents, and is consistent with previous inferences about what this species consumes.

Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different zooplankton functional groups (i.e. near-surface zooplankton collected during manta ray feeding events and non-feeding periods, epipelagic zooplankton, demersal zooplankton and several different zooplankton taxa). Stable isotope δ(15)N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic zooplankton. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ(13)C values in reef manta ray tissue suggest that they do not feed solely on pelagic zooplankton, but rather obtain part of their diet from another origin. The closest match was with demersal zooplankton, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal zooplankton is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs.

Manta rays Manta alfredi are present all year round at Lady Elliot Island (LEI) in the southern Great Barrier Reef, Australia, with peaks in abundance during autumn and winter. Drivers influencing these fluctuations in abundance of M. alfredi at the site remain uncertain. Based on daily count, behavioural, weather and oceanographic data collected over a three-year period, this study examined the link between the relative number of sightings of manta rays at LEI, the biophysical environment, and the habitat use of individuals around the LEI reef using generalised additive models. The response variable in each of the three generalised additive models was number of sightings (per trip at sea) of cruising, cleaning or foraging M. alfredi. We used a set of eleven temporal, meteorological, biological, oceanographic and lunar predictor variables. Results for cruising, cleaning and foraging M. alfredi explained 27.5%, 32.8% and 36.3% of the deviance observed in the respective models and highlighted five predictors (year, day of year, wind speed, chlorophyll-a concentration and fraction of moon illuminated) as common influences to the three models. There were more manta rays at LEI in autumn and winter, slower wind speeds, higher productivity, and around the new and full moon. The winter peak in sightings of foraging M. alfredi was found to precede peaks in cleaning and cruising activity around the LEI reef, which suggests that enhanced food availability may be a principal driver for this seasonal aggregation. A spatial analysis of behavioural observations highlighted several sites around the LEI reef as 'multi-purpose' areas where cleaning and foraging activities commonly occur, while the southern end of the reef is primarily a foraging area. The use of extensive citizen science datasets, such as those collected by dive operators in this study, is encouraged as they can provide valuable insights into a species' ecology.

Despite the increasing tourism interest worldwide for the manta ray, Manta alfredi, very little is known about its biology and ecology. Knowledge of its distribution and movement patterns is important for conservation purposes. Here we describe the distribution, site visitation and movements of M. alfredi along the east coast of Australia. Photographic identification techniques were used to identify individual manta rays at three study sites: Lady Elliot Island, North Stradbroke Island and Byron Bay. Of 388 M. alfredi individuals identified at Lady Elliot Island, 187 (48%) were subsequently re-identified at least once at the same site. In total, 31 individuals were identified at both Lady Elliot Island and North Stradbroke Island (~380 km to the south) and 4 at both Lady Elliot Island and Byron Bay (~500 km to the south). Manta alfredi was present all year around at Lady Elliot Island, although in higher numbers in winter, and was mainly observed at North Stradbroke Island and Byron Bay from mid-spring to mid-autumn. This is the first report of seasonal movements and site affinity for M. alfredi in eastern Australian waters and emphasises the value of photographic identification for monitoring the occurrence of individuals.