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Urbanization is a driving factor for biodiversity loss and potential climate change by reducing carbon stocks. Understanding how urban development, as mitigated by socio-economic factors alters urban biodiversity is crucial for effective urban planning that maintains or improves environmental resilience. The luxury effect hypothesis predicts that wealthier parts of a city will have higher levels of biodiversity. This effect has been tested widely but we still have limited understanding of how wealth influences urban biodiversity in tropical regions of developing countries where plant species play profound sociocultural roles beyond aesthetics. This study investigates links between household income and the diversity of cultivated plants distribution within neighborhoods of two growing cities in Benin. We conducted a survey of 936 randomly selected households to record their socioeconomic characteristics and survey the cultivated plant species found in household gardens’. This enabled us to estimate household-level diversity metrics including taxonomic diversity and phylogenetic diversity. We found no global support for the luxury effect on phylogenetic diversity but rented properties had lower plant taxonomic diversity along with less phylogenetic diversity than privately owned houses. Taxonomic diversity is higher in the less urbanized areas while phylogenetic diversity is weakened. Household’s cultural connection to plants has a negative effect on both diversity indices. Our results highlight the complex relationships between socioeconomic traits and urban plant diversity distribution in two tropical African cities, which only partly confirmed the luxury effect hypothesis. Disentangling these complex relationships can help city planners and policymakers to take informed decisions to promote sustainable cities.

The Bacillus Calmette Guerin (BCG) vaccine has been shown to induce non-specific protection against diseases other than tuberculosis in vaccinated individuals, attributed to the induction of trained immunity. We have previously demonstrated that BCG administration induces innate immune training in mixed peripheral blood mononuclear cells and monocytes in calves. Gamma Delta (γδ) T cells are non-conventional T cells that exhibit innate and adaptive immune system features. They are in higher proportion in the peripheral blood of cattle than humans or rodents and play an essential role in bovine immune response to pathogens. In the current study, we determined if BCG administration induced innate immune training in bovine γδ T cells. A group of 16 pre-weaned Holstein calves (2-4 d age) were enrolled in the study and randomly assigned to vaccine and control groups (n=8/group). The vaccine group received two doses of 106 colony forming units (CFU) BCG Danish strain subcutaneously, separated by 2 weeks. The control group remained unvaccinated. Gamma delta T cells were purified from peripheral blood using magnetic cell sorting three weeks after receiving the 1st BCG dose. We observed functional changes in the γδ T cells from BCG-treated calves shown by increased IL-6 and TNF-α cytokine production in response to in vitro stimulation with Escherichia coli LPS and PAM3CSK4. ATAC-Seq analysis of 78,278 regions of open chromatin (peaks) revealed that γδ T cells from BCG-treated calves had an altered epigenetic status compared to cells from the control calves. Differentially accessible peaks (DAP) found near the promoters of innate immunity-related genes like Siglec14, Irf4, Ifna2, Lrrfip1, and Tnfrsf10d were 1 to 4-fold more accessible in cells from BCG-treated calves. MOTIF enrichment analysis of the sequences within DAPs, which explores transcription factor binding motifs (TFBM) upstream of regulatory elements, revealed TFBM for Eomes and IRF-5 were among the most enriched transcription factors. GO enrichment analysis of genes proximal to the DAPs showed enrichment of pathways such as regulation of IL-2 production, T-cell receptor signaling pathway, and other immune regulatory pathways. In conclusion, our study shows that subcutaneous BCG administration in pre-weaned calves can induce innate immune memory in the form of trained immunity in γδ T cells. This memory is associated with increased chromatin accessibility of innate immune response-related genes, thereby inducing a functional trained immune response evidenced by increased IL-6 and TNF-α cytokine production.

La leptospirosis es una infección sistémica zoonótica, transmitida a través de la piel, mucosas o ingesta de agua contaminada por espiroquetas patógenas del género Leptospira en mamíferos y roedores infectados. Se presenta con sintomatología inespecífica de aparición aguda asociada a dolor abdominal, hemorragia subconjuntival e ictericia, que suele tener una resolución completa en la mayoría de los pacientes; sin embargo, en menor porcentaje puede progresar causando complicaciones sistémicas graves, con alto riesgo de mortalidad principalmente por nefropatía aguda, disfunción hepática asociada a ictericia y hemorragias, llamada síndrome de Weil o fiebre icterohemorrágica. Se presenta una serie de casos de pacientes que cursaron con síndrome biliar obstructivo como principal manifestación de infección grave por leptospirosis.

The analytical validation is reported for a targeted methylation-based cell-free DNA multi-cancer early detection test designed to detect cancer and predict the cancer signal origin (tissue of origin). A machine-learning classifier was used to analyze the methylation patterns of >105 genomic targets covering >1 million methylation sites. Analytical sensitivity (limit of detection [95% probability]) was characterized with respect to tumor content by expected variant allele frequency and was determined to be 0.07%-0.17% across five tumor cases and 0.51% for the lymphoid neoplasm case. Test specificity was 99.3% (95% confidence interval, 98.6-99.7%). In the reproducibility and repeatability study, results were consistent in 31/34 (91.2%) pairs with cancer and 17/17 (100%) pairs without cancer; between runs, results were concordant for 129/133 (97.0%) cancer and 37/37 (100%) non-cancer sample pairs. Across 3- to 100-ng input levels of cell-free DNA, cancer was detected in 157/182 (86.3%) cancer samples but not in any of the 62 non-cancer samples. In input titration tests, cancer signal origin was correctly predicted in all tumor samples detected as cancer. No cross-contamination events were observed. No potential interferent (hemoglobin, bilirubin, triglycerides, genomic DNA) affected performance. The results of this analytical validation study support continued clinical development of a targeted methylation cell-free DNA multi-cancer early detection test.

La producción de café en Colombia hace parte de uno de los renglones más importantes de su economía, de este producto dependen miles de personas directa e indirectamente que se han visto afectados por la volatilidad de su precio en los mercados locales e internacionales. El presente estudio consiste en analizar un modelo predictivo de los precios internos del café que ayudará a mitigar el impacto económico producto de su cotización en bolsa. Para ello se empleó el análisis de series de tiempo, lo que permitió formular un modelo autorregresivo de media móvil heterocedástico cuya ventana de tiempo comprende las cotizaciones del precio que van desde el año 2010 hasta el 2019, tiempo que incluyó su respectivo periodo de entrenamiento y validación. Se obtiene como resultado un modelo que cumplió satisfactoriamente con la etapa de diagnóstico, así como de validación. Se concluye de los resultados que el análisis y construcción del modelo permitió realizar una predicción de los precios del café para el mes de enero del 2020 cuyo comportamiento presentó estabilidad con una disminución lenta pero sostenida de la volatilidad.

Abstract Plant invasions can result in serious threats for biodiversity and ecosystem functioning. Reliable maps at very‐high spatial resolution are needed to assess invasions dynamics. Field sampling approaches could be replaced by unmanned aerial vehicles (UAVs) to derive such maps. However, pixel‐based species classification at high spatial resolution is highly affected by within‐canopy variation caused by shadows. Here, we studied the effect of shadows on mapping the occurrence of invasive species using UAV‐based data. MaxEnt one‐class classifications were applied to map Acacia dealbata, Ulex europaeus and Pinus radiata in central‐south Chile using combinations of UAV‐based spectral (RGB and hyperspectral), 2D textural and 3D structural variables including and excluding shaded canopy pixels during model calibration. The model accuracies in terms of area under the curve (AUC), Cohen's Kappa, sensitivity (true positive rate) and specificity (true negative rate) were examined in sunlit and shaded canopies separately. Bootstrapping was used for validation and to assess statistical differences between models. Our results show that shadows significantly affect the accuracies obtained with all types of variables. The predictions in shaded areas were generally inaccurate, leading to misclassification rates between 65% and 100% even when shadows were included during model calibration. The exclusion of shaded areas from model calibrations increased the predictive accuracies (especially in terms of sensitivity), decreasing false positives. Spectral and 2D textural information showed generally higher performances and improvements when excluding shadows from the analysis. Shadows significantly affected the model results obtained with any of the variables used, hence the exclusion of shadows is recommended prior to model calibration. This relatively easy pre‐processing step enhances models for classifying species occurrences using high‐resolution spectral imagery and derived products. Finally, a shadow simulation showed differences in the ideal acquisition window for each species, which is important to plan revisit campaigns.

The utilization of marine renewable energies such as offshore wind farming leads to globally expanding human activities in marine habitats. While knowledge on the responses to offshore wind farms and associated shipping traffic is accumulating now at a fast pace, it becomes important to assess the population impacts on species affected by those activities. In the North Sea, the protected diver species Red-throated Diver (Gavia stellata) and Black-throated Diver (Gavia arctica) widely avoid offshore wind farms. We used an explicit spatio-temporal Bayesian model to get a robust estimate of the diver population during the spring season between 2001 and 2018, based on a set of aerial surveys from long-term monitoring programs within the German North Sea. Despite the erection of 20 offshore wind farms in the study area and marked responses of divers to wind farms, model results indicated that there was no population decline, and overall numbers fluctuated around 16,600 individuals, with average annual 95% CI ranging between 13,400 and 21,360 individuals. Although, avoidance behavior due to wind farm development led to a more narrowly focused spatial distribution of the birds centered in the persistent high concentration zone in the Eastern German Bight Special Protection Area, the results provide no indication of negative fitness consequences on these long-lived species. However, more research is needed on habitat use and food availability in this regard.

Researchers have become increasingly aware that data-analysis decisions affect results. Here, we examine this issue systematically for multinomial processing tree (MPT) models, a popular class of cognitive models for categorical data. Specifically, we examine the robustness of MPT model parameter estimates that arise from two important decisions: the level of data aggregation (complete-pooling, no-pooling, or partial-pooling) and the statistical framework (frequentist or Bayesian). These decisions span a multiverse of estimation methods. We synthesized the data from 13,956 participants (164 published data sets) with a meta-analytic strategy and analyzed the magnitude of divergence between estimation methods for the parameters of nine popular MPT models in psychology (e.g., process-dissociation, source monitoring). We further examined moderators as potential sources of divergence. We found that the absolute divergence between estimation methods was small on average (

Numerous long-term, free-air plant growth facilities currently explore vegetation responses to the ongoing climate change in northern latitudes. Open top chamber (OTC) experiments as well as the experimental set-ups with active warming focus on many facets of plant growth and performance, but information on morphological alterations of plant cells is still scarce. Here we compare the effects of in-situ warming on leaf epidermal cell expansion in dwarf birch, Betula nana in Finland, Greenland, and Poland. The localities of the three in-situ warming experiments represent contrasting regions of B. nana distribution, with the sites in Finland and Greenland representing the current main distribution in low and high Arctic, respectively, and the continental site in Poland as a B. nana relict Holocene microrefugium. We quantified the epidermal cell lateral expansion by microscopic analysis of B. nana leaf cuticles. The leaves were produced in paired experimental treatment plots with either artificial warming or ambient temperature. At all localities, the leaves were collected in two years at the end of the growing season to facilitate between-site and within-site comparison. The measured parameters included the epidermal cell area and circumference, and using these, the degree of cell wall undulation was calculated as an Undulation Index (UI). We found enhanced leaf epidermal cell expansion under experimental warming, except for the extremely low temperature Greenland site where no significant difference occurred between the treatments. These results demonstrate a strong response of leaf growth at individual cell level to growing season temperature, but also suggest that in harsh conditions other environmental factors may limit this response. Our results provide evidence of the relevance of climate warming for plant leaf maturation and underpin the importance of studies covering large geographical scales.

Listeria monocytogenes hijacks host actin to promote its intracellular motility and intercellular spread. While L. monocytogenes virulence hinges on cell-to-cell spread, little is known about the dynamics of bacterial spread in epithelia at a population level. Here, we use live microscopy and statistical modeling to demonstrate that L. monocytogenes cell-to-cell spread proceeds anisotropically in an epithelial monolayer in culture. We show that boundaries of infection foci are irregular and dominated by rare pioneer bacteria that spread farther than the rest. We extend our quantitative model for bacterial spread to show that heterogeneous spreading behavior can improve the chances of creating a persistent L. monocytogenes infection in an actively extruding epithelium. Thus, our results indicate that L. monocytogenes cell-to-cell spread is heterogeneous, and that rare pioneer bacteria determine the frontier of infection foci and may promote bacterial infection persistence in dynamic epithelia.Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).

During pregnancy, the placenta protects the fetus against the maternal immune response, as well as bacterial and viral pathogens. Bacterial pathogens that have evolved specific mechanisms of breaching this barrier, such as Listeria monocytogenes, present a unique opportunity for learning how the placenta carries out its protective function. We previously identified the L. monocytogenes protein Internalin P (InlP) as a secreted virulence factor critical for placental infection. Here, we show that InlP, but not the highly similar L. monocytogenes internalin Lmo2027, binds to human afadin (encoded by AF-6), a protein associated with cell-cell junctions. A crystal structure of InlP reveals several unique features, including an extended leucine-rich repeat (LRR) domain with a distinctive Ca2+-binding site. Despite afadin's involvement in the formation of cell-cell junctions, MDCK epithelial cells expressing InlP displayed a decrease in the magnitude of the traction stresses they could exert on deformable substrates, similar to the decrease in traction exhibited by AF-6 knock-out MDCK cells. L. monocytogenes ΔinlP mutants were deficient in their ability to form actin-rich protrusions from the basal face of polarized epithelial monolayers, a necessary step in the crossing of such monolayers (transcytosis). A similar phenotype was observed for bacteria expressing an internal in-frame deletion in inlP (inlP ΔLRR5) that specifically disrupts its interaction with afadin. However, afadin deletion in the host cells did not rescue the transcytosis defect. We conclude that secreted InlP targets cytosolic afadin to specifically promote L. monocytogenes transcytosis across the basal face of epithelial monolayers, which may contribute to the crossing of the basement membrane during placental infection.

Los objetivos de este trabajo fueron detectar Helicobacter pylori en biopsias gástricas de pacientes sintomáticos adultos mediante PCR, detectar la presencia del gen cagA y de las variantes alélicas de vacA, y relacionar los genotipos con los diagnósticos endoscópicos. En el 81 % (39/48) de los pacientes se detectó H. pylori mediante nested PCR para hsp60. La presencia de cagA se detectó en 15/22 de las muestras y vacA s1 - m1 fue la combinación alélica más frecuente (15/22). El diagnóstico más frecuente, gastritis, se asoció en 10/13 de los casos con el genotipo cagA+, de los cuales 9/13 presentaron la variante alélica vacA s1- m1. En 3/3 pacientes con gastritis por H. pylori con genotipo cagA' se detectó la variante vacA s2 - m2. Estos resultados son los primeros comunicados en nuestra región y aportan datos de interés epidemiológico.Our goals were: a) to detect Helicobacter pylori in gastric biopsies of symptomatic adults by PCR, b) to detect the presence of the cagA gene as well as of the allelic variants of the vacA gene, and c) to correlate genotypes with the endoscopic diagnoses. H. pylori was detected in 81 % (39/48) of patients by nested PCR for hsp60. The presence of cagA was detected in 15/22 of samples and vacA s1 - m1 was the most frequent allelic combination (15/22). Gastritis, the most frequent diagnosis, was associated with genotype cagA+ in 10/13 of patients. In this group, 9/13 showed the allelic variant vacA s1- m1. The variant vacA s2 - m2 was detected in 3/3 of gastritis cases by H. pylori with the cagA- genotype. These results are the first reported in our region and provide data of epidemiological interest.

En este trabajo se estudia la caracterización mineralógica de la fracción arcillosa de dos muestras de suelos agrícolas pertenecientes a vertisols provenientes del Valle de San Lorenzo, Región Piura, mediante las técnicas analíticas de fluorescencia de rayos X por dispersión de energía (FRX), difractometría de rayos X (DRX) y espectroscopia Mössbauer (EM). Previo a su caracterización mineralógica las muestras fueron sometidas a análisis fisicoquímicos tales como medición de pH, eliminación de materia orgánica y análisis textural. En este trabajo se han utilizado dos muestras, las cuales han sido denominadas M1 y M2, y extraídas de dos calicatas diferentes a una profundidad de 50 cm y 150 cm, respectivamente. Los espectros Mössbauer fueron tomados a temperatura de ambiente por la modalidad de transmisión. Los resultados del análisis por la FRX indican que ambas muestras tienen aproximadamente la misma concentración de Fe, que fue de aproximadamente 3.85% y 3.99% para M1 y M2, respectivamente. Así mismo, se observa la presencia de algunos elementos que sirven de nutrientes a las plantas como Ca, K, Cu, Zn y Mn; los cuales pueden estar presentes en los minerales de arcilla como cationes interlaminares. Los análisis mineralógicos por DRX de ambas muestras dan la presencia de fases de cuarzo, albita y de minerales de arcilla como montmorillonita, illita (tipo 2:1) y caolinita (tipo 1:1). Los resultados por la EM para ambas muestras, evidencian la presencia de dos sitios de Fe3+ en estado paramagnético ocupando sitios octaédricos (cis y trans) en la montmorillonita; adicionalmente se observa la presencia de un doblete paramagnético de Fe3+ , el cual ha sido asociado a sitios tetraédricos en la montmorillonita, ya que posee corrimiento isomérico y desdoblamiento cuadrupolar pequeños. Finalmente se identifica un doblete de Fe3+ , el cual no ha sido asociado a ningún mineral, ya que sus parámetros se superponen a aquellos correspondientes a la montmorillonita, illita y/o caolinita. Estos resultados también indican que el hierro se encuentra principalmente distribuido dentro los sitios octaédricos de la montmorillonita de ambas muestras.

Introducción. La cirugía por laparoscopia se enfo- ca hacia el desarrollo de técnicas cada vez menos invasivas. Actualmente, es posible introducir a la cavidad abdominal múltiples instrumentos a través de un mismo puerto, y la colecistectomía transumbilical apunta a una cirugía que no deje cicatrices visibles. Materiales y métodos. Se describe una modificación de la técnica laparoscópica de puerto único para el manejo microinvasivo de la vesícula biliar, utilizando un guante quirúrgico. Se practicó una colecistectomía laparoscópica de puerto único, utilizando instrumentos básicos de laparoscopia más un separador sencillo (Alexis; Applied Medical, Rancho Santa Margarita, CA) y un guante quirúrgico. Resultados. Se practicó de forma exitosa una colecistectomía por laparoscopia por puerto único en una paciente de 40 años de edad. La paciente padecía de cólico biliar de varios meses de evolución y acudió al servicio de urgencias por un episodio agudo de colecistitis. Se confirmó el diagnóstico mediante ecografía hepatobiliar. La cirugía se practicó en 50 minutos y no hubo ninguna complicación intraoperatoria o posoperatoria. Discusión. La colecistectomía por laparoscopia de puerto único utilizando un guante quirúrgico, es una técnica segura, asequible y de bajos costos para la práctica de cirugía mínimamente invasiva, especialmente en países en desarrollo.

Malaria transmission depends on infective stages in the mosquito salivary glands. Plasmodium sporozoites that mature in midgut oocysts must traverse the hemocoel and invade the mosquito salivary glands in a process thought to be mediated by parasite ligands. MAEBL, a homologue of the transmembrane EBP ligands essential in merozoite invasion, is expressed abundantly in midgut sporozoites. Alternative splicing generates different MAEBL isoforms and so it is unclear what form is functionally essential. To identify the MAEBL isoform required for P. falciparum (NF54) sporozoite invasion of salivary glands, we created knockout and allelic replacements each carrying CDS of a single MAEBL isoform. Only the transmembrane form of MAEBL is essential and is the first P. falciparum ligand validated as essential for invasion of Anopheles salivary glands. MAEBL is the first P. falciparum ligand experimentally determined to be essential for this important step in the life cycle where the vector becomes infectious for transmitting sporozoites to people. With an increasing emphasis on advancing vector-based transgenic methods for suppression of malaria, it is important that this type of study, using modern molecular genetic tools, is done with the agent of the human disease. Understanding what P. falciparum sporozoite ligands are critical for mosquito transmission will help validate targets for vector-based transmission-blocking strategies.

Listeria monocytogenes hijacks host actin to promote its intracellular motility and intercellular spread. While L. monocytogenes virulence hinges on cell-to-cell spread, little is known about the dynamics of bacterial spread in epithelia at a population level. Here, we use live microscopy and statistical modeling to demonstrate that L. monocytogenes cell-to-cell spread proceeds anisotropically in an epithelial monolayer in culture. We show that boundaries of infection foci are irregular and dominated by rare pioneer bacteria that spread farther than the rest. We extend our quantitative model for bacterial spread to show that heterogeneous spreading behavior can improve the chances of creating a persistent L. monocytogenes infection in an actively extruding epithelium. Thus, our results indicate that L. monocytogenes cell-to-cell spread is heterogeneous, and that rare pioneer bacteria determine the frontier of infection foci and may promote bacterial infection persistence in dynamic epithelia. Editorial note:This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).

Introduction: All cosmetic ingredients must be evaluated for their safety to consumers. In the absence of in vivo data, systemic concentrations of ingredients can be predicted using Physiologically based Pharmacokinetic (PBPK) models. However, more examples are needed to demonstrate how they can be validated and applied in Next-Generation Risk Assessments (NGRA) of cosmetic ingredients. We used a bottom-up approach to develop human PBPK models for genistein and daidzein for a read-across NGRA, whereby genistein was the source chemical for the target chemical, daidzein. Methods: An oral rat PBPK model for genistein was built using PK-Sim® and in vitro ADME input data. This formed the basis of the daidzein oral rat PBPK model, for which chemical-specific input parameters were used. Rat PBPK models were then converted to human models using human-specific physiological parameters and human in vitro ADME data. In vitro skin metabolism and penetration data were used to build the dermal module to represent the major route of exposure to cosmetics. Results: The initial oral rat model for genistein was qualified since it predicted values within 2-fold of measured in vivo PK values. This was used to predict plasma concentrations from the in vivo NOAEL for genistein to set test concentrations in bioassays. Intrinsic hepatic clearance and unbound fractions in plasma were identified as sensitive parameters impacting the predicted Cmax values. Sensitivity and uncertainty analyses indicated the developed PBPK models had a moderate level of confidence. An important aspect of the development of the dermal module was the implementation of first-pass metabolism, which was extensive for both chemicals. The final human PBPK model for daidzein was used to convert the in vitro PoD of 33 nM (from an estrogen receptor transactivation assay) to an external dose of 0.2% in a body lotion formulation. Conclusion: PBPK models for genistein and daidzein were developed as a central component of an NGRA read-across case study. This will help to gain regulatory confidence in the use of PBPK models, especially for cosmetic ingredients. [ABSTRACT FROM AUTHOR]

Symmetric cell division requires the even partitioning of genetic information and cytoplasmic contents between daughter cells. Whereas the mechanisms coordinating the segregation of the genome are well known, the processes that ensure organelle segregation between daughter cells remain less well understood.sup.1. Here we identify multiple actin assemblies with distinct but complementary roles in mitochondrial organization and inheritance in mitosis. First, we find a dense meshwork of subcortical actin cables assembled throughout the mitotic cytoplasm. This network scaffolds the endoplasmic reticulum and organizes three-dimensional mitochondrial positioning to ensure the equal segregation of mitochondrial mass at cytokinesis. Second, we identify a dynamic wave of actin filaments reversibly assembling on the surface of mitochondria during mitosis. Mitochondria sampled by this wave are enveloped within actin clouds that can spontaneously break symmetry to form elongated comet tails. Mitochondrial comet tails promote randomly directed bursts of movement that shuffle mitochondrial position within the mother cell to randomize inheritance of healthy and damaged mitochondria between daughter cells. Thus, parallel mechanisms mediated by the actin cytoskeleton ensure both equal and random inheritance of mitochondria in symmetrically dividing cells. During mitosis, complementary actin-based mechanisms ensure equal and random distributions of mitochondria among daughter cells following symmetrical cell division., Author(s): Andrew S. Moore [sup.1] [sup.2] [sup.3] , Stephen M. Coscia [sup.1] [sup.2] [sup.4] , Cory L. Simpson [sup.1] [sup.2] [sup.5] , Fabian E. Ortega [sup.6] , Eric C. Wait [...]