6 results on '"FAI-BLUP"'
Search Results
2. Sweet potato (Ipomoea batatas L.) genotype selection using advanced indices and statistical models: A multi-year approach
- Author
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Zakaria Alam, Sanjida Akter, Md Anwar Hossain Khan, Md Iqbal Hossain, Md Nurul Amin, Avijit Biswas, Ebna Habib Md Shofiur Rahaman, Mir Aszad Ali, Debashish Chanda, Md Hasan Sofiur Rahman, Md Abu Kawochar, Md Shamshul Alam, Mohammad Mainuddin Molla, Md Monirul Islam, M.A.H.S. Jahan, Md Zulfikar Haider Prodhan, Md Monjurul Kadir, and Debasish Sarker
- Subjects
Sweet potato selection ,Stability ,MGIDI ,FAI-BLUP ,WAAS ,MTSI ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
In Bangladesh, sweet potato holds the fourth position as a crucial carbohydrate source, trailing rice, wheat, and potato. However, locally grown sweet potato varieties often display limited stability and yield. To tackle this challenge, diverse selection methods and statistical models were utilized to pinpoint sweet potato genotypes showcasing both stability and superior yield and quality traits. In the initial two years, multiple selection methods were employed to narrow down the collections based on preferences for yield and its contributing traits. Subsequently, a multi-environment trial (MET) was conducted in the following year to pinpoint superior and stable genotypes with desirable yield and quality characteristics. An integrated approach involving the Multi-Trait Genotype Ideotype Distance Index (MGIDI), Factor Analysis and Ideotype-Design (FAI-BLUP), and Smith-Hazel Index (SH) led to the identification of 71 superior sweet potato genotypes out of a total of 351 in the initial growing season. In the subsequent season, the MGIDI selection index was applied to the 71 genotypes, resulting in the selection of 11 top-performing genotypes. This selection process was complemented by a detailed analysis of the strengths and weaknesses of the selected genotypes. In the MET, the mixed effect model, specifically the linear mixed model (LMM), identified significant genotypic and genotype-environment interaction (GEI) variances. This points to elevated heritability and selection accuracy, ultimately boosting the model's reliability. By combining the strengths of LMM and additive main effects and multiplicative interaction (AMMI), the best linear unbiased prediction (BLUP) index identified H20 as the top-performing genotype for marketable root yield (MRY), H37 for dry weight of root (DW), H8 for beta carotene (BC) and H41 for vitamin c (VC). These genotypes surpassed the overall average in the WAAS index. For simultaneous stability and high performance, the WAASBY index selected H37 for MRY, H6 for DW, H61 for BC, and H3 for VC. Finally, genotypes H3 and H20 were selected using multi-trait stability index (MTSI), as they possessed high performance and stability. Based on the selection sense, the objective has been achieved with regards to the trait MRW, which serves as a major criterion for a superior variety of sweet potato.
- Published
- 2024
- Full Text
- View/download PDF
3. Characterization and Trait Association Analysis of 27 Pearl Millet Landraces in Southern Tunisia.
- Author
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Triki, Tebra, Bennani, Leila, Boussora, Faiza, Tlahig, Samir, Ben Ali, Sihem, Gasmi, Amel, Yahia, Hedi, Belhouchette, Khaled, Loumerem, Mohamed, and Guasmi, Ferdaous
- Subjects
- *
PEARL millet , *GENETIC variation , *GRAIN yields , *GENOTYPES , *PHENOTYPES , *PHENOTYPIC plasticity - Abstract
Pearl millet (Pennisetum glaucum (L.) R. Br., 2n = 2x = 14, Poaceae), is a cross-pollinated, warm-season crop grown worldwide. To select genotypes for breeding pearl millet cultivars that adapt to drought condition in southern Tunisia, we evaluated the grain yield (GY) and yield-related traits using a set of 27 landraces at two locations in southern Tunisia for two grown seasons (2019 and 2020). The genetic variability, phenotypic and genotypic association, and path coefficient (PC), based on grain yield (GY) and different yield-related agronomic traits, were evaluated. Analysis of variance and BLUPs value revealed a wide range of variability and the possibility of genetic selection for traits that are advantageous. Broad sense heritability (H) for all the traits ranged from 24.10% for grain yield (GY) to 57.11% for spike length (SL), indicating low to moderate inheritability. Genetic advance as a percentage of the mean (GAM) ranged from high (29.56%) for principal panicle weight (PPW) to moderate for all the traits except from plant high (PH) (7.31%). For all the traits, the phenotypic coefficient of variation (PCV) was higher than genotypic coefficient of variation (GCV), indicating the magnitude of environmental conditions. GY was significantly correlated with all the traits at the genotypic and phenotypic level. According to the path coefficient, the traits PPW and SL displayed the highest direct effects on GY. Heatmap analysis demonstrated a clear segregation between the early and late genotypes based on their geographic origin. Based on the cluster analysis and FAI-BLUPS analysis, genotypes G11, G13, G12, G17 and G18 were selected as the best-performing genotypes with the shortest cycle. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
4. Characterization and Trait Association Analysis of 27 Pearl Millet Landraces in Southern Tunisia
- Author
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Tebra Triki, Leila Bennani, Faiza Boussora, Samir Tlahig, Sihem Ben Ali, Amel Gasmi, Hedi Yahia, Khaled Belhouchette, Mohamed Loumerem, and Ferdaous Guasmi
- Subjects
arid land ,climate change ,FAI-BLUP ,genotypic correlation ,genetic variability ,heritability ,Agriculture - Abstract
Pearl millet (Pennisetum glaucum (L.) R. Br., 2n = 2x = 14, Poaceae), is a cross-pollinated, warm-season crop grown worldwide. To select genotypes for breeding pearl millet cultivars that adapt to drought condition in southern Tunisia, we evaluated the grain yield (GY) and yield-related traits using a set of 27 landraces at two locations in southern Tunisia for two grown seasons (2019 and 2020). The genetic variability, phenotypic and genotypic association, and path coefficient (PC), based on grain yield (GY) and different yield-related agronomic traits, were evaluated. Analysis of variance and BLUPs value revealed a wide range of variability and the possibility of genetic selection for traits that are advantageous. Broad sense heritability (H) for all the traits ranged from 24.10% for grain yield (GY) to 57.11% for spike length (SL), indicating low to moderate inheritability. Genetic advance as a percentage of the mean (GAM) ranged from high (29.56%) for principal panicle weight (PPW) to moderate for all the traits except from plant high (PH) (7.31%). For all the traits, the phenotypic coefficient of variation (PCV) was higher than genotypic coefficient of variation (GCV), indicating the magnitude of environmental conditions. GY was significantly correlated with all the traits at the genotypic and phenotypic level. According to the path coefficient, the traits PPW and SL displayed the highest direct effects on GY. Heatmap analysis demonstrated a clear segregation between the early and late genotypes based on their geographic origin. Based on the cluster analysis and FAI-BLUPS analysis, genotypes G11, G13, G12, G17 and G18 were selected as the best-performing genotypes with the shortest cycle.
- Published
- 2023
- Full Text
- View/download PDF
5. Sweet potato ( Ipomoea batatas L.) genotype selection using advanced indices and statistical models: A multi-year approach.
- Author
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Alam Z, Akter S, Khan MAH, Hossain MI, Amin MN, Biswas A, Rahaman EHMS, Ali MA, Chanda D, Rahman MHS, Kawochar MA, Alam MS, Molla MM, Islam MM, Jahan MAHS, Prodhan MZH, Kadir MM, and Sarker D
- Abstract
In Bangladesh, sweet potato holds the fourth position as a crucial carbohydrate source, trailing rice, wheat, and potato. However, locally grown sweet potato varieties often display limited stability and yield. To tackle this challenge, diverse selection methods and statistical models were utilized to pinpoint sweet potato genotypes showcasing both stability and superior yield and quality traits. In the initial two years, multiple selection methods were employed to narrow down the collections based on preferences for yield and its contributing traits. Subsequently, a multi-environment trial (MET) was conducted in the following year to pinpoint superior and stable genotypes with desirable yield and quality characteristics. An integrated approach involving the Multi-Trait Genotype Ideotype Distance Index (MGIDI), Factor Analysis and Ideotype-Design (FAI-BLUP), and Smith-Hazel Index (SH) led to the identification of 71 superior sweet potato genotypes out of a total of 351 in the initial growing season. In the subsequent season, the MGIDI selection index was applied to the 71 genotypes, resulting in the selection of 11 top-performing genotypes. This selection process was complemented by a detailed analysis of the strengths and weaknesses of the selected genotypes. In the MET, the mixed effect model, specifically the linear mixed model (LMM), identified significant genotypic and genotype-environment interaction (GEI) variances. This points to elevated heritability and selection accuracy, ultimately boosting the model's reliability. By combining the strengths of LMM and additive main effects and multiplicative interaction (AMMI), the best linear unbiased prediction (BLUP) index identified H20 as the top-performing genotype for marketable root yield (MRY), H37 for dry weight of root (DW), H8 for beta carotene (BC) and H41 for vitamin c (VC). These genotypes surpassed the overall average in the WAAS index. For simultaneous stability and high performance, the WAASBY index selected H37 for MRY, H6 for DW, H61 for BC, and H3 for VC. Finally, genotypes H3 and H20 were selected using multi-trait stability index (MTSI), as they possessed high performance and stability. Based on the selection sense, the objective has been achieved with regards to the trait MRW, which serves as a major criterion for a superior variety of sweet potato., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests. Zakaria Alam reports financial support, administrative support, and equipment, drugs, or supplies were provided by 10.13039/501100005867Bangladesh Agricultural Research Institute, Bangladesh. The International Potato Centre (CIP) in Lima, Peru, arranged the article processing charge (APC) for this manuscript., (© 2024 The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
6. Inheritance of traits related to productivity and fatty acid profile of winter squash seed oil and selection of compact plants with higher functional oil productivity
- Author
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Almeida, Cleverson Freitas de and Silva, Derly José Henriques da
- Subjects
Melhoramento Vegetal ,Cucurbita moschata - Melhoramento genético ,Morfometria ,FAI-BLUP - Abstract
Fundação de Amparo à Pesquisa do Estado de Minas Gerais Diante do aumento da demanda interna de óleos vegetais e a busca do aproveitamento de resíduos produzidos na agricultura, o uso do óleo de sementes de abóbora se mostra extremamente promissor. Uma forma de aumentar sua produtividade é mediante o aumento do número de plantas por área o que pode ser obtido via redução do porte da planta. Para possibilitar altos ganhos via melhoramento genético para produtividade de óleo, assim como, perfil de ácidos graxos é imprescindível o conhecimento da natureza e magnitude da variação genética na população, o que pode ser feito via análise de gerações. Além disso, como são necessários ganhos genéticos para vários caracteres simultaneamente é necessário o uso de índices de seleção. Portanto, o objetivo deste trabalho foi determinar a herança de caracteres relacionados à produtividade e perfil de ácidos graxos do óleo de sementes da abóbora e estimar as relações genéticas entre esses caracteres, assim como, selecionar genótipos de abóbora com crescimento compactos, precoces e com maior produtividade de óleo funcional de sementes. Para isso primeiramente foram utilizadas seis gerações derivadas do cruzamento envolvendo genitores contrastantes para esses caracteres. Os genitores utilizados foram o BGH 7319 e o cultivar Tronco Verde, e a partir do cruzamento desses dois genitores foram obtidas as plantas F 1 , as quais foram autofecundadas para obtenção da geração F 2 e também retrocruzadas com os genitores P 1 e P 2 para obtenção das gerações RC 1 e RC 2 , respectivamente. Para realizar a seleção, foram avaliadas 76 famílias de meios irmãos obtidas de cada planta RC 1 avaliada, sendo cada família constituída por cinco plantas, totalizando 380 indivíduos. Foi utilizado o delineamento experimental de blocos aumentados (DBA), com 10 repetições para os tratamentos comuns. Os valores genéticos individuais e de famílias foram estimados a partir do procedimento da máxima verossimilhança restrita/melhor predição linear não viesada (REML/BLUP). Foram estimadas a acurácia e herdabilidades para famílias e indivíduos, e a seleção dos melhores genótipos foi realizada com o auxílio do índice FAI-BLUP (Factor Analysis and Ideotype-Design), comparando-se três estratégias de seleção, a saber: seleção de 20% das melhores famílias (1), seleção entre e dentro simultaneamente (2), seleção individual, independente de famílias (seleção massal) (3). Em geral, a análise de gerações demonstrou que os efeitos aditivos foram predominantes para a maioria dos caracteres, sendo que para teor de óleo constatou-se sobredominância. Quanto à seleção dos melhores genótipos, foram obtidos os maiores ganhos de seleção preditos com a estratégia de seleção individual, com ganhos preditos para produtividade de sementes em torno de 35% e de redução do comprimento do entrenó de 15% em média, sendo considerada a melhor estratégia. Os ganhos preditos para perfil de ácidos graxos e teor de óleo foram próximos a zero independente da estratégia utilizada. O índice FAI-BLUP viabilizou a seleção de genótipos de abóbora com crescimento compacto, precoces e com maior produtividade de óleo funcional de sementes que poderão ser utilizados em um programa de seleção recorrente intrapopulacional. Palavras-chave: Cucurbita moschata. FAI-BLUP. Porte. Given the increase in domestic demand for vegetable oils and the search for the use of waste produced in agriculture, the use of winter squash seed oil is extremely promising. One way to increase its productivity is by increasing the number of plants per area, which can be obtained through the development of more compact plants. To enable high gains via genetic plant breeding for oil productivity, as well as the fatty acid profile, it is essential to know the nature and magnitude of genetic variation in the population, which can be done via generational analysis. Furthermore, as genetic gains are needed for several traits simultaneously, it is necessary to use selection indices. Therefore, the objective of this work was to determine the inheritance of traits related to the yield and fatty acid profile of winter squash seed oil and to estimate the genetic relationships between these traits, as well, select winter squash genotypes with compact growth, earlier-flowering and with higher productivity of functional seed oil. For this, firstly, six generations derived from crosses involving contrasting parents for the traits under study. The parents used were BGH 7319 and the cultivar Tronco Verde, F 1 plants were obtained from the crossing of these two parents, which were then self-fertilized to obtain the F 2 generation; F 1 plants were also backcrossed with the P 1 and P 2 parents to obtain the RC 1 and RC 2 generations, respectively. To carry out the selection, 76 half-sib families obtained from each RC 1 plant were evaluated, five plants per family being evaluated, totaling 380 individuals. The experimental design of augmented blocks (DAB) was used, with 10 repetitions for the common treatments. The individual and family breeding values were estimated using the restricted maximum likelihood/best unbiased linear prediction procedure (REML/BLUP), and after the best genotypes were selected through the FAI-BLUP selection index, comparing three selection strategies, namely: selection of 20% of the best families (1), selection between and within families simultaneously (2), and individual selection, independent of families (mass selection) (3). In general, additive effects were predominant for most of the traits, with an overdominance for oil content. Regarding the selection of the best genotypes greater selection gains were obtained with the individual selection strategy, with predicted gains of 15% in internode length reduction, and a seed productivity gain around 35%, with individual selection being considered the best selection strategy. The predicted gains for the fatty acid profile and oil content were close to zero, regardless of the selection strategy. The FAI-BLUP index enabled the selection of winter squash genotypes with compact growth, earlier-flowering and with higher productivity of functional seed oil that could be used in recurrent intrapopulation selection program. Keywords: Cucurbita moschata. FAI-BLUP. Plant size.
- Published
- 2021
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