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1. Resilience of genetic diversity in forest trees over the Quaternary

Author

Milesi, Pascal, Kastally, Chedly, Dauphin, Benjamin, Cervantes, Sandra, Bagnoli, Francesca, Budde, Katharina B., Cavers, Stephen, Fady, Bruno, Faivre-Rampant, Patricia, González-Martínez, Santiago C., Grivet, Delphine, Gugerli, Felix, Jorge, Véronique, Lesur Kupin, Isabelle, Ojeda, Dario I., Olsson, Sanna, Opgenoorth, Lars, Pinosio, Sara, Plomion, Christophe, Rellstab, Christian, Rogier, Odile, Scalabrin, Simone, Scotti, Ivan, Vendramin, Giovanni G., Westergren, Marjana, Lascoux, Martin, and Pyhäjärvi, Tanja

Published
2024
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3. A 14-year series of leaf phenological data collected for European beech (Fagus sylvatica L.) and silver fir (Abies alba Mill.) from their geographic range margins in south-eastern France

Author

Jean, Frederic, Davi, Hendrik, Oddou-Muratorio, Sylvie, Fady, Bruno, Scotti, Ivan, Scotti-Saintagne, Caroline, Ruffault, Julien, Journe, Valentin, Clastre, Philippe, Marloie, Olivier, Brunetto, William, Correard, Marianne, Gilg, Olivier, Pringarbe, Mehdi, Rei, Franck, Thevenet, Jean, Turion, Norbert, and Pichot, Christian

Published
2023
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4. Forest Genetics Research in the Mediterranean Basin: Bibliometric Analysis, Knowledge Gaps, and Perspectives

Author

Fady, Bruno, Esposito, Edoardo, Abulaila, Khaled, Aleksic, Jelena M., Alia, Ricardo, Alizoti, Paraskevi, Apostol, Ecaterina-Nicoleta, Aravanopoulos, Phil, Ballian, Dalibor, Kharrat, Magda Bou Dagher, Carrasquinho, Isabel, Albassatneh, Marwan Cheikh, Curtu, Alexandru-Lucian, David-Schwartz, Rakefet, de Dato, Giovanbattista, Douaihy, Bouchra, Eliades, Nicolas-George Homer, Fresta, Louis, Gaouar, Semir Bechir Suheil, Illoul, Malika Hachi, Ivetic, Vladan, Ivankovic, Mladen, Kandemir, Gaye, Khaldi, Abdelhamid, Khouja, Mohamed Larbi, Kraigher, Hojka, Lefèvre, François, Mahfoud, Ilène, Marchi, Maurizio, Martín, Felipe Pérez, Picard, Nicolas, Sabatti, Maurizio, Sbay, Hassan, Scotti-Saintagne, Caroline, Stevens, Darrin T, Vendramin, Giovanni Giuseppe, Vinceti, Barbara, and Westergren, Marjana

Published
2022
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6. A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource.

Author

Mosca, Elena, Cruz, Fernando, Gómez-Garrido, Jèssica, Bianco, Luca, Rellstab, Christian, Brodbeck, Sabine, Csilléry, Katalin, Fady, Bruno, Fladung, Matthias, Fussi, Barbara, Gömöry, Dušan, González-Martínez, Santiago C, Grivet, Delphine, Gut, Marta, Hansen, Ole Kim, Heer, Katrin, Kaya, Zeki, Krutovsky, Konstantin V, Kersten, Birgit, Liepelt, Sascha, Opgenoorth, Lars, Sperisen, Christoph, Ullrich, Kristian K, Vendramin, Giovanni G, Westergren, Marjana, Ziegenhagen, Birgit, Alioto, Tyler, Gugerli, Felix, Heinze, Berthold, Höhn, Maria, Troggio, Michela, and Neale, David B

Subjects
Abies, Computational Biology, Genomics, Genome, Plant, Databases, Genetic, Genome, Chloroplast, Molecular Sequence Annotation, High-Throughput Nucleotide Sequencing, Genome Size, Whole Genome Sequencing, Abies alba, annotation, chloroplast genome, conifer genome, genome assembly, Genome, Plant, Databases, Genetic, Chloroplast, Genetics
Abstract

Silver fir (Abies alba Mill.) is a keystone conifer of European montane forest ecosystems that has experienced large fluctuations in population size during during the Quaternary and, more recently, due to land-use change. To forecast the species' future distribution and survival, it is important to investigate the genetic basis of adaptation to environmental change, notably to extreme events. For this purpose, we here provide a first draft genome assembly and annotation of the silver fir genome, established through a community-based initiative. DNA obtained from haploid megagametophyte and diploid needle tissue was used to construct and sequence Illumina paired-end and mate-pair libraries, respectively, to high depth. The assembled A. alba genome sequence accounted for over 37 million scaffolds corresponding to 18.16 Gb, with a scaffold N50 of 14,051 bp. Despite the fragmented nature of the assembly, a total of 50,757 full-length genes were functionally annotated in the nuclear genome. The chloroplast genome was also assembled into a single scaffold (120,908 bp) that shows a high collinearity with both the A. koreana and A. sibirica complete chloroplast genomes. This first genome assembly of silver fir is an important genomic resource that is now publicly available in support of a new generation of research. By genome-enabling this important conifer, this resource will open the gate for new research and more precise genetic monitoring of European silver fir forests.

Published
2019

7. Conservation and Breeding of Mediterranean Pines

Author

Climent, José, Alizoti, Paraskevi, Rodriguez-Quilón, Isabel, Kurt, Yusuf, Ducci, Fulvio, Fady, Bruno, Alía, Ricardo, Tomé, Margarida, Series Editor, Seifert, Thomas, Series Editor, Kurttila, Mikko, Series Editor, Ne'eman, Gidi, editor, and Osem, Yagil, editor

Published
2021
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10. Correction to: Forest Genetics Research in the Mediterranean Basin: Bibliometric Analysis, Knowledge Gaps, and Perspectives

Author

Fady, Bruno, Esposito, Edoardo, Abulaila, Khaled, Aleksic, Jelena M., Alia, Ricardo, Alizoti, Paraskevi, Apostol, Ecaterina-Nicoleta, Aravanopoulos, Phil, Ballian, Dalibor, Kharrat, Magda Bou Dagher, Carrasquinho, Isabel, Albassatneh, Marwan Cheikh, Curtu, Alexandru-Lucian, David-Schwartz, Rakefet, de Dato, Giovanbattista, Douaihy, Bouchra, Eliades, Nicolas-George Homer, Fresta, Louis, Gaouar, Semir Bechir Suheil, Illoul, Malika Hachi, Ivetic, Vladan, Ivankovic, Mladen, Kandemir, Gaye, Khaldi, Abdelhamid, Khouja, Mohamed Larbi, Kraigher, Hojka, Lefèvre, François, Mahfoud, Ilène, Marchi, Maurizio, Martín, Felipe Pérez, Picard, Nicolas, Sabatti, Maurizio, Sbay, Hassan, Scotti-Saintagne, Caroline, Stevens, Darrin T., Vendramin, Giovanni Giuseppe, Vinceti, Barbara, and Westergren, Marjana

Published
2022
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13. Diversity and enrichment of breeding material for resilience in European forests

Author

European Commission, Ministerio de Ciencia e Innovación (España), Olsson, Sanna [0000-0002-1199-4499], Dauphin, Benjamin [0000-0003-0982-4252], Jorge, Véronique [0000-0002-5016-3006], Grivet, Delphine [0000-0001-8168-4456], Farsakoglou, Anna Maria [0000-0002-1906-2813], Climent Maldonado, José María [0000-0002-0815-2645], Alizoti, Paraskevi [0000-0002-5656-8434], Faivre-Rampant, Patricia [0000-0003-0777-6621], Pinosio, S. [0000-0002-1820-3637], Scalabrin, Simone [0000-0001-8686-8385], Bagnoli, Francesca [0000-0001-6909-0006], Scotti, I. [0000-0002-8951-2680], Vendramin, G. G. [0000-0001-9921-7872], González-Martínez, S. C. [0000-0002-4534-3766], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Olsson, Sanna, Dauphin, Benjamin, Jorge, Véronique, Grivet, Delphine, Farsakoglou, Anna Maria, Climent Maldonado, José María, Alizoti, Paraskevi, Faivre-Rampant, Patricia, Pinosio, S., Milesi, Pascal, Scalabrin, Simone, Bagnoli, Francesca, Scotti, I., Vendramin, G. G., González-Martínez, Santiago C., Fady, Bruno, Aravanopoulos, Filippos A., Bastien, Catherine, Alía Miranda, Ricardo, European Commission, Ministerio de Ciencia e Innovación (España), Olsson, Sanna [0000-0002-1199-4499], Dauphin, Benjamin [0000-0003-0982-4252], Jorge, Véronique [0000-0002-5016-3006], Grivet, Delphine [0000-0001-8168-4456], Farsakoglou, Anna Maria [0000-0002-1906-2813], Climent Maldonado, José María [0000-0002-0815-2645], Alizoti, Paraskevi [0000-0002-5656-8434], Faivre-Rampant, Patricia [0000-0003-0777-6621], Pinosio, S. [0000-0002-1820-3637], Scalabrin, Simone [0000-0001-8686-8385], Bagnoli, Francesca [0000-0001-6909-0006], Scotti, I. [0000-0002-8951-2680], Vendramin, G. G. [0000-0001-9921-7872], González-Martínez, S. C. [0000-0002-4534-3766], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Olsson, Sanna, Dauphin, Benjamin, Jorge, Véronique, Grivet, Delphine, Farsakoglou, Anna Maria, Climent Maldonado, José María, Alizoti, Paraskevi, Faivre-Rampant, Patricia, Pinosio, S., Milesi, Pascal, Scalabrin, Simone, Bagnoli, Francesca, Scotti, I., Vendramin, G. G., González-Martínez, Santiago C., Fady, Bruno, Aravanopoulos, Filippos A., Bastien, Catherine, and Alía Miranda, Ricardo

Abstract

Delivering material selected for breeding purposes into the wild in the context of sustainable forest management might reduce the levels of genetic diversity of future forests in comparison to that of natural populations. Another consequence might be a reduction of their resilience under uncertain future climatic and socio-economic conditions if these new populations lack adaptability. Despite the long tradition of breeding activities in Europe, there is still a need to assess the impact of genetically enriched material on forests’ resilience. In this study, we address (1) the genetic diversity of selected material compared to its wild ancestors, and (2) how to enrich breeding material to support forests’ resilience under changing socio-environmental conditions. We analysed 16 study cases of selected material delivered from breeding activities in four European forest tree species (Pinus halepensis Mill., Pinus nigra J.F. Arnold, Pinus pinaster Ait. and Populus nigra L.) with different levels of breeding. To answer these two questions, we first assessed and compared the genetic diversity of selected material versus natural populations using both putatively neutral and adaptive (based on diverging selection) Single Nucleotide Polymorphisms (SNPs). We then suggest how to enrich these populations for resilience under future climatic conditions by defining a core collection for each species including material from populations that will likely disappear under future conditions. Thanks to the large SNP datasets available for our focal species, we were able to detect some trends in our data. Expected and observed heterozygosity values for selected populations were almost always identical. The selected material showed small but significant genetic differentiation from their original population and their inbreeding coefficient was generally lower. However, the level of genetic improvement (i.e. low vs high) was not correlated with the observed genetic differences between sele

Published
2023

14. Author Correction: WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

Author

Monnet, Anne-Christine, Cilleros, Kévin, Médail, Frédéric, Albassatneh, Marwan Cheikh, Arroyo, Juan, Bacchetta, Gianluigi, Bagnoli, Francesca, Barina, Zoltán, Cartereau, Manuel, Casajus, Nicolas, Dimopoulos, Panayotis, Domina, Gianniantonio, Doxa, Aggeliki, Escudero, Marcial, Fady, Bruno, Hampe, Arndt, Matevski, Vlado, Misfud, Stephen, Nikolic, Toni, Pavon, Daniel, Roig, Anne, Barea, Estefania Santos, Spanu, Ilaria, Strid, Arne, Vendramin, Giovanni Giuseppe, and Leriche, Agathe

Published
2021
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15. WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

Author

Monnet, Anne-Christine, Cilleros, Kévin, Médail, Frédéric, Albassatneh, Marwan Cheikh, Arroyo, Juan, Bacchetta, Gianluigi, Bagnoli, Francesca, Barina, Zoltán, Cartereau, Manuel, Casajus, Nicolas, Dimopoulos, Panayotis, Domina, Gianniantonio, Doxa, Aggeliki, Escudero, Marcial, Fady, Bruno, Hampe, Arndt, Matevski, Vlado, Misfud, Stephen, Nikolic, Toni, Pavon, Daniel, Roig, Anne, Barea, Estefania Santos, Spanu, Ilaria, Strid, Arne, Vendramin, Giovanni Giuseppe, and Leriche, Agathe

Published
2021
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20. Synthesis Centers as Critical Research Infrastructure

Author

BARON, JILL S., SPECHT, ALISON, GARNIER, ERIC, BISHOP, PAMELA, CAMPBELL, C. ANDREW, DAVIS, FRANK W., FADY, BRUNO, FIELD, DAWN, GROSS, LOUIS J., GURU, SIDDESWARA M., HALPERN, BENJAMIN S., HAMPTON, STEPHANIE E., LEAVITT, PETER R., MEAGHER, THOMAS R., OMETTO, JEAN, PARKER, JOHN N., PRICE, RICHARD, RAWSON, CASEY H., RODRIGO, ALLEN, SHEBLE, LAURA A., and WINTER, MARTEN

Published
2017

22. The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Author

Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Barbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares, Fernando, Cavers, Stephen, Fady, Bruno, Alía, Ricardo, Aravanopoulos, Filippos, Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent, José M., Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna-Maria, del Barrio, José M. García, Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le-Provost, Grégoire, Liesebach, Mirko, Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, Tor, Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez-Valiente, José A., Ramskogler, Kurt, Robledo-Arnuncio, Juan J., Savolainen, Outi, Schueler, Silvio, Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Mette Tollefsrud, Mari, Turion, Norbert, Veisse, Dominique, Vendramin, Giovanni Giuseppe, Villar, Marc, Westin, Johan, and Fonti, Patrick

Published
2020
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24. Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Author

Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Barbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares, Fernando, Cavers, Stephen, Fady, Bruno, Alía, Ricardo, Aravanopoulos, Filippos, Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent, José M., Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna-Maria, García del Barrio, José M., Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le-Provost, Grégoire, Liesebach, Mirko, Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, Tor, Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez-Valiente, José A., Ramskogler, Kurt, Robledo-Arnuncio, Juan J., Savolainen, Outi, Schueler, Silvio, Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Tollefsrud, Mari Mette, Turion, Norbert, Veisse, Dominique, Vendramin, Giovanni Giuseppe, Villar, Marc, Westin, Johan, and Fonti, Patrick

Published
2020
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26. Genetic diversity and population structuring of Pistacia lentiscus L. across Mediterranean region.

Author

Mezni, Faten, Roig, Anne, Scotti-Saintagne, Caroline, Hamrouni, Lamia, Fady, Bruno, and Khaldi, Abdelhamid

Subjects
GERMPLASM conservation, GENETIC variation, HETEROZYGOSITY, PISTACIA, MICROSATELLITE repeats
Abstract

Pistacia lentiscus L., the mastic tree, is an evergreen shrub distributed across the entire Mediterranean Basin. This species, known for millennia for its medicinal, food and cosmetic value is currently threatened by overexploitation and climate change. To help prioritize conservation actions, we studied its genetic diversity using seventy four Mediterranean accessions and seven microsatellite loci. Genomic DNA was extracted from mastic tree leaves. Allelic frequency and population structure estimates were calculated as well as the relationship between studied populations. The observed heterozygosity (Ho) and expected heterozygosity (He) ranged from 0.493 to 0.788 and 0.518 to 0.781 respectively. Shannon’s Information Index (I) ranged from 0.858 to 1.819 with a mean value of 1.420. The mean fixation index (Fst) value was estimated to 0.124. AMOVA analysis showed that only 7% of the variance existed among populations. In addition, the STRUCTURE analysis showed a clear distinction between the eastern and the western Mediterranean populations when the number of clusters (K) was set at 2. The study of genetic diversity of the Mediterranean P. lentiscus is of interest for conservation of genetic resources and it contributed to the understanding of the evolutionary history of this species. [ABSTRACT FROM AUTHOR]

Published
2024
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27. Diversity and enrichment of breeding material for resilience in European forests

Author

Olsson, Sanna, Dauphin, Benjamin, Jorge, Veronique, Grivet, Delphine, Farsakoglou, Anna Maria, Climent, Jose, Alizoti, Paraskevi, Faivre-Rampant, Patricia, Pinosio, Sara, Milesi, Pascal, Scalabrin, Simone, Bagnoli, Francesca, Scotti, Ivan, Vendramin, Giovanni G., Gonzalez-Martinez, Santiago C., Fady, Bruno, Aravanopoulus, Filippos A., Bastien, Catherine, Alia, Ricardo, European Commission, Ministerio de Ciencia e Innovación (España), Olsson, Sanna, Dauphin, Benjamin, Jorge, Véronique, Grivet, Delphine, Farsakoglou, Anna Maria, Climent, José, Alizoti, Paraskevi, Faivre-Rampant, Patricia, Pinosio, Sara, Scalabrin, Simone, Bagnoli, Francesca, Scotti, Ivan, Vendramin, Giovanni G., Gonzalez-Martinez, Santiago C., Fady, Bruno, and Alia, Ricardo

Subjects
Adaptability, Skogsvetenskap, Forest Science, Genetics, Climate change, Forestry, Genetik, Management, Monitoring, Policy and Law, Breeding, Genetic resources, Genetic diversity, Nature and Landscape Conservation
Abstract

11 Pág., Delivering material selected for breeding purposes into the wild in the context of sustainable forest management might reduce the levels of genetic diversity of future forests in comparison to that of natural populations. Another consequence might be a reduction of their resilience under uncertain future climatic and socio-economic conditions if these new populations lack adaptability. Despite the long tradition of breeding activities in Europe, there is still a need to assess the impact of genetically enriched material on forests’ resilience. In this study, we address (1) the genetic diversity of selected material compared to its wild ancestors, and (2) how to enrich breeding material to support forests’ resilience under changing socio-environmental conditions. We analysed 16 study cases of selected material delivered from breeding activities in four European forest tree species (Pinus halepensis Mill., Pinus nigra J.F. Arnold, Pinus pinaster Ait. and Populus nigra L.) with different levels of breeding. To answer these two questions, we first assessed and compared the genetic diversity of selected material versus natural populations using both putatively neutral and adaptive (based on diverging selection) Single Nucleotide Polymorphisms (SNPs). We then suggest how to enrich these populations for resilience under future climatic conditions by defining a core collection for each species including material from populations that will likely disappear under future conditions. Thanks to the large SNP datasets available for our focal species, we were able to detect some trends in our data. Expected and observed heterozygosity values for selected populations were almost always identical. The selected material showed small but significant genetic differentiation from their original population and their inbreeding coefficient was generally lower. However, the level of genetic improvement (i.e. low vs high) was not correlated with the observed genetic differences between selected material and natural populations.The genetic characterization of natural populations distributed across the species range, and the future projection of their range stability, made it possible to identify core-collections that would significantly enrich breeding populations under uncertain future environmental conditions., This work was supported by the European Union’s Horizon 2020 research and innovation programme under grant agreement No 676876-Gentree “Optimizing the management and sustainable use of forest genetic resources in Europe”; the Spanish Ministry of Science [Grant No RTI2018-094691-B-C32].

Published
2023

28. Marginality indices for biodiversity conservation in forest trees

Author

European Commission, Ministero dell'Istruzione, dell'Università e della Ricerca, Slovenian Research Agency, Marchi, Maurizio [0000-0002-6134-1744], Serra-Varela, María Jesús [0000-0002-7733-9737], Westergren, Marjana [0000-0002-4204-0161], Cavers, Stephen [0000-0003-2139-9236], Notivol, Eduardo [0000-0003-4272-4536], Piotti, Andrea [0000-0002-3324-5325], Alizoti, Paraskevi [0000-0002-5656-8434], Bozzano, Michele [0000-0003-1577-6509], González-Martínez, S. C. [0000-0002-4534-3766], Grivet, Delphine [0000-0001-8168-4456], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Vendramin, G. G. [0000-0001-9921-7872], Ducci, Fulvio [0000-0003-2686-9540], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Picard, Nicolas, Marchi, Maurizio, Serra-Varela, María Jesús, Westergren, Marjana, Cavers, Stephen, Notivol, Eduardo, Piotti, Andrea, Alizoti, Paraskevi, Bozzano, Michele, González-Martínez, Santiago C., Grivet, Delphine, Aravanopoulos, Filippos A., Vendramin, G. G., Ducci, Fulvio, Fady, Bruno, Alía Miranda, Ricardo, European Commission, Ministero dell'Istruzione, dell'Università e della Ricerca, Slovenian Research Agency, Marchi, Maurizio [0000-0002-6134-1744], Serra-Varela, María Jesús [0000-0002-7733-9737], Westergren, Marjana [0000-0002-4204-0161], Cavers, Stephen [0000-0003-2139-9236], Notivol, Eduardo [0000-0003-4272-4536], Piotti, Andrea [0000-0002-3324-5325], Alizoti, Paraskevi [0000-0002-5656-8434], Bozzano, Michele [0000-0003-1577-6509], González-Martínez, S. C. [0000-0002-4534-3766], Grivet, Delphine [0000-0001-8168-4456], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Vendramin, G. G. [0000-0001-9921-7872], Ducci, Fulvio [0000-0003-2686-9540], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Picard, Nicolas, Marchi, Maurizio, Serra-Varela, María Jesús, Westergren, Marjana, Cavers, Stephen, Notivol, Eduardo, Piotti, Andrea, Alizoti, Paraskevi, Bozzano, Michele, González-Martínez, Santiago C., Grivet, Delphine, Aravanopoulos, Filippos A., Vendramin, G. G., Ducci, Fulvio, Fady, Bruno, and Alía Miranda, Ricardo

Abstract

Marginal and peripheral populations are important for biodiversity conservation. Their original situation in a species’ geographic and ecological space often confers them genetic diversity and traits of high adaptive value. Yet theoretical hypotheses related to marginality are difficult to test because of confounding factors that influence marginality, namely environment, geography, and history. There is an urgent need to develop metrics to disentangle these confounding factors. We designed nine quantitative indices of marginality and peripherality that define where margins lie within species distributions, from a geographical, an environmental and a historical perspective. Using the distribution maps of eight European forest tree species, we assessed whether these indices were idiosyncratic or whether they conveyed redundant information. Using a database on marginal and peripheral populations based on expert knowledge, we assessed the capacity of the indices to predict the marginality status of a population. There was no consistent pattern of correlation between indices across species, confirming that the indices conveyed different information related to the specific geometry of the species distributions. Contrasting with this heterogeneity of correlation patterns across species, the relative importance of the indices to predict the marginality status of populations was consistent across species. However, there was still a significant country effect in the marginality status, showing a variation in expert opinion of marginality vis-á-vis the species distribution. The marginality indices that we developed are entirely based on distribution maps and can be used for any species. They pave the way for testing hypotheses related to marginality and peripherality, with important implications in quantitative ecology, genetics, and biodiversity conservation.

Published
2022

29. Common microgeographical selection patterns revealed in four European conifers

Author

Agence Nationale de la Recherche (France), European Commission, Ministère de l'Écologie, du Développement durable et de l'Énergie (France), Scotti, I. [0000-0002-8951-2680], Oddou-Muratorio, Sylvie [0000-0003-2374-8313], Scotti-Saintagne, Caroline [0000-0001-6891-7315], Ruiz Daniels, R. [0000-0002-6702-5304], Grivet, Delphine [0000-0001-8168-4456], Lefèvre, François [0000-0003-2242-7251], Cubry, Philippe {0000-0003-1561-8949], Fady, Bruno [0000-0003-2379-7617], Lesur-Kupin, Isabelle [0000-0001-7632-3955], Bagnoli, Francesca {0000-0001-6909-0006], Plomion, Christophe [0000-0002-3176-2767], Rozenberg, Philippe [0000-0002-9971-0795], Vendramin, G. G. [0000-0001-9921-7872], Hadrien Lalagüe [0000-0002-7840-4019], González-Martínez, S. C. [0000-0002-4534-3766], Scotti, I., Oddou-Muratorio, Sylvie, Scotti-Saintagne, Caroline, Ruiz Daniels, R., Grivet, Delphine, Lefèvre, François, Cubry, Philippe, Fady, Bruno, González-Martínez, Santiago C., Roig, Anne, Lesur-Kupin, Isabelle, Bagnoli, Francesca, Guerin, Vanina, Plomion, Christophe, Rozenberg, Philippe, Vendramin, G. G., Hadrien Lalagüe, Agence Nationale de la Recherche (France), European Commission, Ministère de l'Écologie, du Développement durable et de l'Énergie (France), Scotti, I. [0000-0002-8951-2680], Oddou-Muratorio, Sylvie [0000-0003-2374-8313], Scotti-Saintagne, Caroline [0000-0001-6891-7315], Ruiz Daniels, R. [0000-0002-6702-5304], Grivet, Delphine [0000-0001-8168-4456], Lefèvre, François [0000-0003-2242-7251], Cubry, Philippe {0000-0003-1561-8949], Fady, Bruno [0000-0003-2379-7617], Lesur-Kupin, Isabelle [0000-0001-7632-3955], Bagnoli, Francesca {0000-0001-6909-0006], Plomion, Christophe [0000-0002-3176-2767], Rozenberg, Philippe [0000-0002-9971-0795], Vendramin, G. G. [0000-0001-9921-7872], Hadrien Lalagüe [0000-0002-7840-4019], González-Martínez, S. C. [0000-0002-4534-3766], Scotti, I., Oddou-Muratorio, Sylvie, Scotti-Saintagne, Caroline, Ruiz Daniels, R., Grivet, Delphine, Lefèvre, François, Cubry, Philippe, Fady, Bruno, González-Martínez, Santiago C., Roig, Anne, Lesur-Kupin, Isabelle, Bagnoli, Francesca, Guerin, Vanina, Plomion, Christophe, Rozenberg, Philippe, Vendramin, G. G., and Hadrien Lalagüe

Abstract

Microgeographical adaptation occurs when the effects of directional selection persist despite gene flow. Traits and genetic loci under selection can then show adaptive divergence, against the backdrop of little differentiation at other traits or loci. How common such events are and how strong the selection is that underlies them remain open questions. Here, we discovered and analysed microgeographical patterns of genomic divergence in four European and Mediterranean conifers with widely differing life-history traits and ecological requirements (Abies alba MIll., Cedrus atlantica [Endl.] Manetti, Pinus halepensis Mill. and Pinus pinaster Aiton) by screening pairs from geographically close forest stands sampled along steep ecological gradients. We inferred patterns of genomic divergence by applying a combination of divergence outlier detection methods, demographic modelling, Approximate Bayesian Computation inferences and genomic annotation to genomic data. Surprisingly for such small geographical scales, we showed that selection is strong in all species but generally affects different loci in each. A clear signature of selection was systematically detected on a fraction of the genome, of the order of 0.1%-1% of the loci depending on the species. The novel modelling method we designed for estimating selection coefficients showed that the microgeographical selection coefficient scaled by population size (Ns) was 2-30. Our results convincingly suggest that selection maintains within-population diversity at microgeographical scales in spatially heterogeneous environments. Such genetic diversity is likely to be a major reservoir of adaptive potential, helping populations to adapt under fluctuating environmental conditions.

Published
2022

30. Chloroplast DNA barcoding genes matK and psbA-trnH are not suitable for species identification and phylogenetic analyses in closely related pines

Author

Office National des Forêts (France), Ministerio de Economía y Competitividad (España), Aix-Marseille Université, Olsson, Sanna [0000-0002-1199-4499], Giovannelli, Guia [0000-0003-4776-3219], Spanu, Ilaria [0000-0002-5682-133X], Vendramin, G. G. [0000-0001-9921-7872], Fady, Bruno [0000-0003-2379-7617], Olsson, Sanna, Giovannelli, Guia, Roig, Anne, Spanu, Ilaria, Vendramin, G. G., Fady, Bruno, Office National des Forêts (France), Ministerio de Economía y Competitividad (España), Aix-Marseille Université, Olsson, Sanna [0000-0002-1199-4499], Giovannelli, Guia [0000-0003-4776-3219], Spanu, Ilaria [0000-0002-5682-133X], Vendramin, G. G. [0000-0001-9921-7872], Fady, Bruno [0000-0003-2379-7617], Olsson, Sanna, Giovannelli, Guia, Roig, Anne, Spanu, Ilaria, Vendramin, G. G., and Fady, Bruno

Abstract

The largest and most economically important conifer genus Pinus is widespread in the northern hemisphere. Comprehensive phylogenies relying on complete chloroplast gene sequences are now available for the entire genus. However, phylogenetic relationships remain unresolved for certain lineages. One such example, which is also inconsistent in terms of biogeography, is within the subsection Pinus and includes five taxa: Pinus densiflora, P. nigra, P. resinosa, P. sylvestris and P. mugo / uncinata species complex. In this study, we use this clade as an example to explain weak support in phylogenetic studies of closely related pine species and show that some of the most popular genetic markers, namely the chloroplast DNA barcoding sequences matK, psbAtrnH and rbcL, are not recommended for species identification purposes in European pines. In addition, we show that matK and psbA-trnH contain contradicting phylogenetic signals in some of the most economically important pine species.

Published
2022

31. Forest Genetics Research in the Mediterranean Basin: Bibliometric Analysis, Knowledge Gaps, and Perspectives

Author

European Commission, Fady, Bruno [0000-0003-2379-7617], Esposito, Edoardo [0000-0003-2414-6488], Abulaila, Khaled [0000-0001-6746-4342], Aleksic, Jelena M. [0000-0003-3457-905X], Alía Miranda, Ricardo [0000-0002-9426-0967], Alizoti, Paraskevi [0000-0002-5656-8434], Apostol, Ecaterina Nicoleta [0000-0001-6190-3869], Aravanopoulos, Phil [0000-0001-7194-2642], Ballian, Dalibor [0000-0002-0090-6617], Kharrat, Magda Bou Dagher [0000-0001-7969-1673], Carrasquinho, Isabel [0000-0003-1331-3236], Albassatneh, Marwan Cheikh [0000-0002-1466-8672], Curtu, Alexandru Lucian [0000-0001-8509-279X], David-Schwartz, Rakefet [0000-0001-5923-8636], de Dato, Giovanbattista [0000-0003-0289-1727], Douaihy, Bouchra [0000-0001-7600-3409], Eliades, Nicolas George Homer [0000-0002-8107-8584], Fresta, Louis [0000-0001-8645-7359], Gaouar, Semir Bechir Suheil [0000-0001-8691-7116], Ivetic, Vladan [0000-0003-0587-1422], Ivankovic, Mladen [0000-0003-1198-9902], Kandemir, Gaye [0000-0002-4503-5317], Khaldi, Abdelhamid [0000-0002-3258-8860], Kraigher, Hojka [0000-0001-5696-2178], Lefèvre, François [0000-0003-2242-7251], Mahfoud, Ilène [0000-0003-3900-5581], Marchi, Maurizio [0000-0002-6134-1744], Picard, Nicolas [0000-0001-5548-9171], Sabatti, Maurizio [0000-0001-7576-2112], Sbay, Hassan [0000-0002-2531-7982], Scotti-Saintagne, Caroline [0000-0001-6891-7315], Vendramin, G. G. [0000-0001-9921-7872], Vinceti, B. [0000-0001-8908-2994], Westergren, Marjana [0000-0002-4204-0161], Fady, Bruno, Esposito, Edoardo, Abulaila, Khaled, Aleksic, Jelena M., Alía Miranda, Ricardo, Alizoti, Paraskevi, Apostol, Ecaterina Nicoleta, Aravanopoulos, Filippos A., Ballian, Dalibor, Kharrat, Magda Bou Dagher, Carrasquinho, Isabel, Albassatneh, Marwan Cheikh, Curtu, Alexandru Lucian, David-Schwartz, Rakefet, de Dato, Giovanbattista, Douaihy, Bouchra, Eliades, Nicolas George Homer, Fresta, Louis, Gaouar, Semir Bechir Suheil, Illoul, Malika Hachi, Ivetic, Vladan, Ivanković, Mladen, Kandemir, Gaye, Khaldi, Abdelhamid, Khouja, Mohamed Larbi, Kraigher, Hojka, Lefèvre, François, Mahfoud, Ilène, Marchi, Maurizio, Pérez Martín, Felipe, Picard, Nicolas, Sabatti, Maurizio, Sbay, Hassan, Scotti-Saintagne, Caroline, Stevens, Darrin T., Vendramin, G. G., Vinceti, B., Westergren, Marjana, European Commission, Fady, Bruno [0000-0003-2379-7617], Esposito, Edoardo [0000-0003-2414-6488], Abulaila, Khaled [0000-0001-6746-4342], Aleksic, Jelena M. [0000-0003-3457-905X], Alía Miranda, Ricardo [0000-0002-9426-0967], Alizoti, Paraskevi [0000-0002-5656-8434], Apostol, Ecaterina Nicoleta [0000-0001-6190-3869], Aravanopoulos, Phil [0000-0001-7194-2642], Ballian, Dalibor [0000-0002-0090-6617], Kharrat, Magda Bou Dagher [0000-0001-7969-1673], Carrasquinho, Isabel [0000-0003-1331-3236], Albassatneh, Marwan Cheikh [0000-0002-1466-8672], Curtu, Alexandru Lucian [0000-0001-8509-279X], David-Schwartz, Rakefet [0000-0001-5923-8636], de Dato, Giovanbattista [0000-0003-0289-1727], Douaihy, Bouchra [0000-0001-7600-3409], Eliades, Nicolas George Homer [0000-0002-8107-8584], Fresta, Louis [0000-0001-8645-7359], Gaouar, Semir Bechir Suheil [0000-0001-8691-7116], Ivetic, Vladan [0000-0003-0587-1422], Ivankovic, Mladen [0000-0003-1198-9902], Kandemir, Gaye [0000-0002-4503-5317], Khaldi, Abdelhamid [0000-0002-3258-8860], Kraigher, Hojka [0000-0001-5696-2178], Lefèvre, François [0000-0003-2242-7251], Mahfoud, Ilène [0000-0003-3900-5581], Marchi, Maurizio [0000-0002-6134-1744], Picard, Nicolas [0000-0001-5548-9171], Sabatti, Maurizio [0000-0001-7576-2112], Sbay, Hassan [0000-0002-2531-7982], Scotti-Saintagne, Caroline [0000-0001-6891-7315], Vendramin, G. G. [0000-0001-9921-7872], Vinceti, B. [0000-0001-8908-2994], Westergren, Marjana [0000-0002-4204-0161], Fady, Bruno, Esposito, Edoardo, Abulaila, Khaled, Aleksic, Jelena M., Alía Miranda, Ricardo, Alizoti, Paraskevi, Apostol, Ecaterina Nicoleta, Aravanopoulos, Filippos A., Ballian, Dalibor, Kharrat, Magda Bou Dagher, Carrasquinho, Isabel, Albassatneh, Marwan Cheikh, Curtu, Alexandru Lucian, David-Schwartz, Rakefet, de Dato, Giovanbattista, Douaihy, Bouchra, Eliades, Nicolas George Homer, Fresta, Louis, Gaouar, Semir Bechir Suheil, Illoul, Malika Hachi, Ivetic, Vladan, Ivanković, Mladen, Kandemir, Gaye, Khaldi, Abdelhamid, Khouja, Mohamed Larbi, Kraigher, Hojka, Lefèvre, François, Mahfoud, Ilène, Marchi, Maurizio, Pérez Martín, Felipe, Picard, Nicolas, Sabatti, Maurizio, Sbay, Hassan, Scotti-Saintagne, Caroline, Stevens, Darrin T., Vendramin, G. G., Vinceti, B., and Westergren, Marjana

Abstract

Purpose of Review: Recognizing that in the context of global change, tree genetic diversity represents a crucial resource for future forest adaptation, we review and highlight the major forest genetics research achievements of the past decades in biodiversity-rich countries of the Mediterranean region. For this, we conducted a bibliometric analysis of the scientific literature spanning the past thirty years (1991–2020). Putting together the representative regionwide expertise of our co-authorship, we propose research perspectives for the next decade. Recent Findings: Forest genetics research in Mediterranean countries is organized into three different scientific domains of unequal importance. The domain “Population diversity and Differentiation” related to over 62% of all publications of the period, the domain “Environmental conditions, growth and stress response” to almost 23%, and the domain “Phylogeography” to almost 15%. Citation rate was trending the opposite way, indicating a strong and sustained interest in phylogeography and a rising interest for genetics research related to climate change and drought resistance. The share of publications from Asia and Africa to the total within the Mediterranean increased significantly during the 30-year period analyzed, reaching just below 30% during the last decade. Summary: Describing poorly known species and populations, including marginal populations, using the full potential of genomic methods, testing adaptation in common gardens, and modeling adaptive capacity to build reliable scenarios for forest management remain strategic research priorities. Delineating areas of high and low genetic diversity, for conservation and restoration, respectively, is needed. Joining forces between forest management and forest research, sharing data, experience, and knowledge within and among countries will have to progress significantly, e.g., to assess the potential of Mediterranean genetic resources as assisted migration material wo

Published
2022

34. Between but not within species variation in the distribution of fitness effects

Author

James, Jennifer, Kastally, Chedly, Budde, Katharina B., González-Martínez, Santiago C., Milesi, Pascal, Pyhäjärvi, Tanja, Alizoti, Paraskevi, Alía, Ricardo, Ambrosio, Olivier, Aravanopoulos, Filippos A., von Arx, Georg, Audrey, Albet, Auñón, Francisco, Avanzi, Camilla, Avramidou, Evangelia, Bagnoli, Francesca, Bajc, Marko, Ballesteros, Eduardo, Barbas, Evangelos, del Barrio, José M. García, Bastias, Cristina C., Bastien, Catherine, Beffa, Giorgia, Benavides, Raquel, Benoit, Vanina, Bernier, Frédéric, Bignalet, Henri, Bodineau, Guillaume, Bouic, Damien, Brodbeck, Sabine, Brunetto, William, Buchovska, Jurata, Buret, Corinne, Buy, Melanie, Cabanillas-Saldaña, Ana M., Carvalho, Bárbara, Cavers, Stephen, Del Caño, Fernando, Cervantes, Sandra, Cheval, Nicolas, Climent, José M., Correard, Marianne, Cremer, Eva, Danusevičius, Darius, Dauphin, Benjamin, Denou, Jean-Luc, Dokhelar, Bernard, Ducousso, Alexis, Fady, Bruno, Faivre-Rampant, Patricia, Farsakoglou, Anna-Maria, Fonti, Patrick, Ganopoulos, Ioannis, Gilg, Olivier, De Girardi, Nicolas, Graf, René, Gray, Alan, Grivet, Delphine, Gugerli, Felix, Hartleitner, Christoph, Heer, Katrin, Hollenbach, Enja, Hurel, Agathe, Issenhuth, Bernard, Jean, Florence, Jorge, Véronique, Jouineau, Arnaud, Kappner, Jan-Philipp, Kesälahti, Robert, Knutzen, Florian, Kujala, Sonja T., Kumpula, Timo A., Kärkkäinen, Katri, Labriola, Mariaceleste, Lalanne, Celine, Lambertz, Johannes, Le-Provost, Gregoire, Lejeune, Vincent, Lesur-Kupin, Isabelle, Levillain, Joseph, Liesebach, Mirko, López-Quiroga, David, Malliarou, Ermioni, Marchon, Jérémy, Mariotte, Nicolas, Mas, Antonio, Matesanz, Silvia, Meier, Benjamin, Meischner, Helge, Michotey, Célia, Morganti, Sandro, Myking, Tor, Nievergelt, Daniel, Eskild Nilsen, Anne, Notivol, Eduardo, Ojeda, Dario I., Olsson, Sanna, Opgenoorth, Lars, Ostreng, Geir, Pakull, Birte, Perry, Annika, Pinosio, Sara, Piotti, Andrea, Plomion, Christophe, Poinot, Nicolas, Pringarbe, Mehdi, Puzos, Luc, Raffin, Annie, Ramírez-Valiente, José A., Rellstab, Christian, Remi, Dourthe, Reutimann, Oliver, Richter, Sebastian, Robledo-Arnuncio, Juan J., Rogier, Odile, Sancho, Elisabet Martínez, Savolainen, Outi, Scalabrin, Simone, Schneck, Volker, Schueler, Silvio, Scotti, Ivan, Segundo, Sergio San, Semerikov, Vladimir, Slámová, Lenka, Spanu, Ilaria, Sønstebø, Jørn Henrik, Thevenet, Jean, Tollefsrud, Mari Mette, Turion, Norbert, Valladares, Fernando, Vendramin, Giovanni G., Villar, Marc, Westergren, Marjana, Westin, Johan, Lascoux, Martin, James, Jennifer, Kastally, Chedly, Budde, Katharina B., González-Martínez, Santiago C., Milesi, Pascal, Pyhäjärvi, Tanja, Alizoti, Paraskevi, Alía, Ricardo, Ambrosio, Olivier, Aravanopoulos, Filippos A., von Arx, Georg, Audrey, Albet, Auñón, Francisco, Avanzi, Camilla, Avramidou, Evangelia, Bagnoli, Francesca, Bajc, Marko, Ballesteros, Eduardo, Barbas, Evangelos, del Barrio, José M. García, Bastias, Cristina C., Bastien, Catherine, Beffa, Giorgia, Benavides, Raquel, Benoit, Vanina, Bernier, Frédéric, Bignalet, Henri, Bodineau, Guillaume, Bouic, Damien, Brodbeck, Sabine, Brunetto, William, Buchovska, Jurata, Buret, Corinne, Buy, Melanie, Cabanillas-Saldaña, Ana M., Carvalho, Bárbara, Cavers, Stephen, Del Caño, Fernando, Cervantes, Sandra, Cheval, Nicolas, Climent, José M., Correard, Marianne, Cremer, Eva, Danusevičius, Darius, Dauphin, Benjamin, Denou, Jean-Luc, Dokhelar, Bernard, Ducousso, Alexis, Fady, Bruno, Faivre-Rampant, Patricia, Farsakoglou, Anna-Maria, Fonti, Patrick, Ganopoulos, Ioannis, Gilg, Olivier, De Girardi, Nicolas, Graf, René, Gray, Alan, Grivet, Delphine, Gugerli, Felix, Hartleitner, Christoph, Heer, Katrin, Hollenbach, Enja, Hurel, Agathe, Issenhuth, Bernard, Jean, Florence, Jorge, Véronique, Jouineau, Arnaud, Kappner, Jan-Philipp, Kesälahti, Robert, Knutzen, Florian, Kujala, Sonja T., Kumpula, Timo A., Kärkkäinen, Katri, Labriola, Mariaceleste, Lalanne, Celine, Lambertz, Johannes, Le-Provost, Gregoire, Lejeune, Vincent, Lesur-Kupin, Isabelle, Levillain, Joseph, Liesebach, Mirko, López-Quiroga, David, Malliarou, Ermioni, Marchon, Jérémy, Mariotte, Nicolas, Mas, Antonio, Matesanz, Silvia, Meier, Benjamin, Meischner, Helge, Michotey, Célia, Morganti, Sandro, Myking, Tor, Nievergelt, Daniel, Eskild Nilsen, Anne, Notivol, Eduardo, Ojeda, Dario I., Olsson, Sanna, Opgenoorth, Lars, Ostreng, Geir, Pakull, Birte, Perry, Annika, Pinosio, Sara, Piotti, Andrea, Plomion, Christophe, Poinot, Nicolas, Pringarbe, Mehdi, Puzos, Luc, Raffin, Annie, Ramírez-Valiente, José A., Rellstab, Christian, Remi, Dourthe, Reutimann, Oliver, Richter, Sebastian, Robledo-Arnuncio, Juan J., Rogier, Odile, Sancho, Elisabet Martínez, Savolainen, Outi, Scalabrin, Simone, Schneck, Volker, Schueler, Silvio, Scotti, Ivan, Segundo, Sergio San, Semerikov, Vladimir, Slámová, Lenka, Spanu, Ilaria, Sønstebø, Jørn Henrik, Thevenet, Jean, Tollefsrud, Mari Mette, Turion, Norbert, Valladares, Fernando, Vendramin, Giovanni G., Villar, Marc, Westergren, Marjana, Westin, Johan, and Lascoux, Martin

Abstract

New mutations provide the raw material for evolution and adaptation. The distribution of fitness effects (DFE) describes the spectrum of effects of new mutations that can occur along a genome, and is therefore of vital interest in evolutionary biology. Recent work has uncovered striking similarities in the DFE between closely related species, prompting us to ask whether there is variation in the DFE among populations of the same species, or among species with different degrees of divergence, i.e., whether there is variation in the DFE at different levels of evolution. Using exome capture data from six tree species sampled across Europe we characterised the DFE for multiple species, and for each species, multiple populations, and investigated the factors potentially influencing the DFE, such as demography, population divergence and genetic background. We find statistical support for there being variation in the DFE at the species level, even among relatively closely related species. However, we find very little difference at the population level, suggesting that differences in the DFE are primarily driven by deep features of species biology, and that evolutionarily recent events, such as demographic changes and local adaptation, have little impact.

Published
2023

35. Chloroplast DNA barcoding genes matK and psbA-trnH are not suitable for species identification and phylogenetic analyses in closely related pines

Author

Olsson, Sanna, Giovannelli, Guia, Roig, Anne, Spanu, Ilaria, Vendramin, Giovanni Giuseppe, Fady, Bruno, Office National des Forêts (France), Ministerio de Economía y Competitividad (España), Aix-Marseille Université, Olsson, Sanna, Giovannelli, Guia, Spanu, Ilaria, Vendramin, Giovanni Giuseppe, Fady, Bruno, Olsson, Sanna [0000-0002-1199-4499], Giovannelli, Guia [0000-0003-4776-3219], Spanu, Ilaria [0000-0002-5682-133X], Vendramin, Giovanni Giuseppe [0000-0001-9921-7872], and Fady, Bruno [0000-0003-2379-7617]

Subjects
GenBank, Gene Tree, Pinus, Taxonomy
Abstract

7 Pág. Centro de Investigación Forestal (CIFOR), The largest and most economically important conifer genus Pinus is widespread in the northern hemisphere. Comprehensive phylogenies relying on complete chloroplast gene sequences are now available for the entire genus. However, phylogenetic relationships remain unresolved for certain lineages. One such example, which is also inconsistent in terms of biogeography, is within the subsection Pinus and includes five taxa: Pinus densiflora, P. nigra, P. resinosa, P. sylvestris and P. mugo / uncinata species complex. In this study, we use this clade as an example to explain weak support in phylogenetic studies of closely related pine species and show that some of the most popular genetic markers, namely the chloroplast DNA barcoding sequences matK, psbAtrnH and rbcL, are not recommended for species identification purposes in European pines. In addition, we show that matK and psbA-trnH contain contradicting phylogenetic signals in some of the most economically important pine species., This work was supported by: The French Office National des Forêts “Programme global de conservation des populations françaises de pin de Salzmann”; the French DNA barcoding program “Bibliothèque du Vivant”; the Spanish Ministry of Economy and Competitiveness (MINECO) contract to SO [PTA2015-10836-I]; the Aix-Marseille Université, France (Ecole Doctorale ED251) grant to GG; the short-term scientific mission program of the COST Action FP1202 grant to GG.

Published
2022

40. Diversity and enrichment of breeding material for resilience in European forests

Author

Olsson, Sanna, primary, Dauphin, Benjamin, additional, Jorge, Véronique, additional, Grivet, Delphine, additional, Farsakoglou, Anna Maria, additional, Climent, Jose, additional, Alizoti, Paraskevi, additional, Faivre-Rampant, Patricia, additional, Pinosio, Sara, additional, Milesi, Pascal, additional, Scalabrin, Simone, additional, Bagnoli, Francesca, additional, Scotti, Ivan, additional, Vendramin, Giovanni G., additional, Gonzalez-Martinez, Santiago C., additional, Fady, Bruno, additional, Aravanopoulus, Filippos A., additional, Bastien, Catherine, additional, and Alia, Ricardo, additional

Published
2023
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41. Forest genetic resources and forest reproductive material at the crosssection of multiple policy domains in Europe

Author

Rogelja, Todora, primary, Secco, Laura, additional, Padovezi, Aurelio, additional, Pettenella, Davide, additional, Masiero, Mauro, additional, Pisani, Elena, additional, Giacomoni, Jacopo, additional, Da Re, Riccardo, additional, Caiolo, Sofia, additional, Lovrić, Marko, additional, Farsakoglou, Anna-Maria, additional, Bozzano, Michele, additional, Lefèvre, François, additional, Fady, Bruno, additional, Desgroux, Aurore, additional, González-Martínez, Santiago C., additional, Ovaska, Ulla, additional, Rusanen, Mari, additional, Beuker, Egbert, additional, Soini, Katriina, additional, Japelj, Anže, additional, Heino, Konrad, additional, Braun, Martin, additional, Kjær, Erik Dahl, additional, Hansen, Jon Kehlet, additional, Mihai, Georgeta, additional, Alexandru, Alin, additional, Apostol, Ecaterina-Nicoleta, additional, Fernandez Calvo, Alicia, additional, Luquero Ramos, Laura Maria, additional, Navarro De La Cruz, Mariano, additional, Ottaviani Aalmo, Giovanna, additional, and Leonhard, Bent, additional

Published
2023
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43. Common microgeographical selection patterns revealed in four European conifers

Author

Scotti, Ivan, primary, Lalagüe, Hadrien, additional, Oddou‐Muratorio, Sylvie, additional, Scotti‐Saintagne, Caroline, additional, Ruiz Daniels, Rose, additional, Grivet, Delphine, additional, Lefevre, François, additional, Cubry, Philippe, additional, Fady, Bruno, additional, González‐Martínez, Santiago C., additional, Roig, Anne, additional, Lesur‐Kupin, Isabelle, additional, Bagnoli, Francesca, additional, Guerin, Vanina, additional, Plomion, Christophe, additional, Rozenberg, Philippe, additional, and Vendramin, Giovanni G., additional

Published
2022
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44. Marginality indices for biodiversity conservation in forest trees

Author

Picard, Nicolas, primary, Marchi, Maurizio, additional, Serra-Varela, Maria Jesus, additional, Westergren, Marjana, additional, Cavers, Stephen, additional, Notivol, Eduardo, additional, Piotti, Andrea, additional, Alizoti, Paraskevi, additional, Bozzano, Michele, additional, González-Martínez, Santiago C., additional, Grivet, Delphine, additional, Aravanopoulos, Filippos A., additional, Vendramin, Giovanni Giuseppe, additional, Ducci, Fulvio, additional, Fady, Bruno, additional, and Alía, Ricardo, additional

Published
2022
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48. Forest tree genomics: 10 achievements from the past 10 years and future prospects

Author

Plomion, Christophe, Bastien, Catherine, Bogeat-Triboulot, Marie-Béatrice, Bouffier, Laurent, Déjardin, Annabelle, Duplessis, Sébastien, Fady, Bruno, Heuertz, Myriam, Le Gac, Anne-Laure, Le Provost, Grégoire, Legué, Valérie, Lelu-Walter, Marie-Anne, Leplé, Jean-Charles, Maury, Stéphane, Morel, Alexandre, Oddou-Muratorio, Sylvie, Pilate, Gilles, Sanchez, Léopoldo, Scotti, Ivan, Scotti-Saintagne, Caroline, Segura, Vincent, Trontin, Jean-François, and Vacher, Corinne

Published
2016
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49. Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Author

Martínez-Sancho, Elisabet [0000-0003-4413-6818], Slámová, Lenka [0000-0001-8978-0688], Carvalho, Bárbara [0000-0002-4129-2746], Dauphin, Benjamin [0000-0003-0982-4252], Rellstab, Christian [0000-0002-0221-5975], Gugerli, Felix [0000-0003-3878-1845], Opgenoorth, Lars [0000-0003-0737-047X], Heer, Katrin [0000-0002-1036-599X], Knutzen, Florian [0000-0001-9172-4802], von Arx, Georg [0000-0002-8566-4599], Cavers, Stephen [0000-0003-2139-9236], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Avanzi, Camilla [0000-0003-1632-5304], Bagnoli, Francesca [0000-0001-6909-0006], Barbas, Evangelos [0000-0002-5760-605X], Bastien, Catherine [0000-0002-9391-6637], Benavides, Raquel [0000-0003-2328-5371], Bernier, Frédéric [0000-0003-4945-7215], Bastias, Cristina C. [0000-0002-2479-2001], Charpentier, Jean-Paul [0000-0002-6029-0498], Climent Maldonado, José María [0000-0002-0815-2645], Danusevicius, Darius [0000-0002-1196-9293], Farsakoglou, Anna Maria [0000-0002-1906-2813], García Del Barrio, José Manuel [0000-0001-7267-6286], Gilg, Olivier [0000-0002-9083-4492], González-Martínez, S. C. [0000-0002-4534-3766], Hurel, Agathe [0000-0002-4853-9123], Kärkkäinen, Katri [0000-0002-3799-3013], Kujala, Sonja T. [0000-0003-0949-6156], Labriola, Mariaceleste [0000-0002-7622-1921], Lascoux, Martin [0000-0003-1699-9042], Lefebvre, Marlène [0000-0002-0929-5744], Le Provost, G. [0000-0003-1561-266X], Liesebach, M. [0000-0001-8840-5026], Malliarou, Ermioni [0000-0003-4478-9173], Matesanz, Silvia [0000-0003-0060-6136], Michotey, Célia [0000-0003-1877-1703], Myking, T. [0000-0002-8207-4542], Notivol, Eduardo [0000-0003-4272-4536], Pakull, Birte [0000-0003-0921-6732], Piotti, Andrea [0000-0002-3324-5325], Plomion, Christophe [0000-0002-3176-2767], Pyhäjärvi, Tanja [0000-0001-6958-5172], Raffin, Annie [0000-0003-2459-4264], Ramírez Valiente, José Alberto [0000-0002-5951-2938], Robledo-Arnuncio, Juan José [0000-0002-3909-8928], Schueler, S.[0000-0003-0155-5692], Semerikov, Vladimir [0000-0002-2942-8794], Spanu, Ilaria [0000-0002-5682-133X], Mette Tollefsrud, Mari [0000-0002-5939-7845], Vendramin, G. G. [0000-0001-9921-7872], Fonti, Patrick [0000-0002-7070-3292], Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Bárbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares Ros, Fernando, Cavers, Stephen, Fady, Bruno, Alía Miranda, Ricardo, Aravanopoulos, Filippos A., Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent Maldonado, José María, Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna Maria, García Del Barrio, José Manuel, Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le Provost, G., Liesebach, M., Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, T., Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez Valiente, José Alberto, Ramskogler, Kurt, Robledo-Arnuncio, Juan José, Savolainen, Outi, Schueler, S., Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Mette Tollefsrud, Mari, Turion, Norbert, Veisse, Dominique, Vendramin, G. G., Villar, Marc, Westin, Johan, Fonti, Patrick, Martínez-Sancho, Elisabet [0000-0003-4413-6818], Slámová, Lenka [0000-0001-8978-0688], Carvalho, Bárbara [0000-0002-4129-2746], Dauphin, Benjamin [0000-0003-0982-4252], Rellstab, Christian [0000-0002-0221-5975], Gugerli, Felix [0000-0003-3878-1845], Opgenoorth, Lars [0000-0003-0737-047X], Heer, Katrin [0000-0002-1036-599X], Knutzen, Florian [0000-0001-9172-4802], von Arx, Georg [0000-0002-8566-4599], Cavers, Stephen [0000-0003-2139-9236], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Avanzi, Camilla [0000-0003-1632-5304], Bagnoli, Francesca [0000-0001-6909-0006], Barbas, Evangelos [0000-0002-5760-605X], Bastien, Catherine [0000-0002-9391-6637], Benavides, Raquel [0000-0003-2328-5371], Bernier, Frédéric [0000-0003-4945-7215], Bastias, Cristina C. [0000-0002-2479-2001], Charpentier, Jean-Paul [0000-0002-6029-0498], Climent Maldonado, José María [0000-0002-0815-2645], Danusevicius, Darius [0000-0002-1196-9293], Farsakoglou, Anna Maria [0000-0002-1906-2813], García Del Barrio, José Manuel [0000-0001-7267-6286], Gilg, Olivier [0000-0002-9083-4492], González-Martínez, S. C. [0000-0002-4534-3766], Hurel, Agathe [0000-0002-4853-9123], Kärkkäinen, Katri [0000-0002-3799-3013], Kujala, Sonja T. [0000-0003-0949-6156], Labriola, Mariaceleste [0000-0002-7622-1921], Lascoux, Martin [0000-0003-1699-9042], Lefebvre, Marlène [0000-0002-0929-5744], Le Provost, G. [0000-0003-1561-266X], Liesebach, M. [0000-0001-8840-5026], Malliarou, Ermioni [0000-0003-4478-9173], Matesanz, Silvia [0000-0003-0060-6136], Michotey, Célia [0000-0003-1877-1703], Myking, T. [0000-0002-8207-4542], Notivol, Eduardo [0000-0003-4272-4536], Pakull, Birte [0000-0003-0921-6732], Piotti, Andrea [0000-0002-3324-5325], Plomion, Christophe [0000-0002-3176-2767], Pyhäjärvi, Tanja [0000-0001-6958-5172], Raffin, Annie [0000-0003-2459-4264], Ramírez Valiente, José Alberto [0000-0002-5951-2938], Robledo-Arnuncio, Juan José [0000-0002-3909-8928], Schueler, S.[0000-0003-0155-5692], Semerikov, Vladimir [0000-0002-2942-8794], Spanu, Ilaria [0000-0002-5682-133X], Mette Tollefsrud, Mari [0000-0002-5939-7845], Vendramin, G. G. [0000-0001-9921-7872], Fonti, Patrick [0000-0002-7070-3292], Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Bárbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares Ros, Fernando, Cavers, Stephen, Fady, Bruno, Alía Miranda, Ricardo, Aravanopoulos, Filippos A., Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent Maldonado, José María, Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna Maria, García Del Barrio, José Manuel, Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le Provost, G., Liesebach, M., Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, T., Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez Valiente, José Alberto, Ramskogler, Kurt, Robledo-Arnuncio, Juan José, Savolainen, Outi, Schueler, S., Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Mette Tollefsrud, Mari, Turion, Norbert, Veisse, Dominique, Vendramin, G. G., Villar, Marc, Westin, Johan, and Fonti, Patrick

Abstract

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Published
2020

50. The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Author

European Commission, Martínez-Sancho, Elisabet [0000-0003-4413-6818], Slámová, Lenka [0000-0001-8978-0688], Carvalho, Bárbara [0000-0002-4129-2746], Dauphin, Benjamin [0000-0003-0982-4252], Rellstab, Christian [0000-0002-0221-5975], Gugerli, Felix [0000-0003-3878-1845], Opgenoorth, Lars [0000-0003-0737-047X], Heer, Katrin [0000-0002-1036-599X], Knutzen, Florian [0000-0001-9172-4802], von Arx, Georg [0000-0002-8566-4599], Cavers, Stephen [0000-0003-2139-9236], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Avanzi, Camilla [0000-0003-1632-5304], Bagnoli, Francesca [0000-0001-6909-0006], Barbas, Evangelos [0000-0002-5760-605X], Bastien, Catherine [0000-0002-9391-6637], Benavides, Raquel [0000-0003-2328-5371], Bernier, Frédéric [0000-0003-4945-7215], Bastias, Cristina C. [0000-0002-2479-2001], Charpentier, Jean-Paul [0000-0002-6029-0498], Climent Maldonado, José María [0000-0002-0815-2645], Danusevicius, Darius [0000-0002-1196-9293], Farsakoglou, Anna Maria [0000-0002-1906-2813], García Del Barrio, José Manuel [0000-0001-7267-6286], Gilg, Olivier [0000-0002-9083-4492], González-Martínez, S. C. [0000-0002-4534-3766], Hurel, Agathe [0000-0002-4853-9123], Kärkkäinen, Katri [0000-0002-3799-3013], Kujala, Sonja T. [0000-0003-0949-6156], Labriola, Mariaceleste [0000-0002-7622-1921], Lascoux, Martin [0000-0003-1699-9042], Lefebvre, Marlène [0000-0002-0929-5744], Le Provost, G. [0000-0003-1561-266X], Liesebach, M. [0000-0001-8840-5026], Malliarou, Ermioni [0000-0003-4478-9173], Matesanz, Silvia [0000-0003-0060-6136], Michotey, Célia [0000-0003-1877-1703], Myking, T. [0000-0002-8207-4542], Notivol, Eduardo [0000-0003-4272-4536], Pakull, Birte [0000-0003-0921-6732], Piotti, Andrea [0000-0002-3324-5325], Plomion, Christophe [0000-0002-3176-2767], Pyhäjärvi, Tanja [0000-0001-6958-5172], Raffin, Annie [0000-0003-2459-4264], Ramírez Valiente, José Alberto [0000-0002-5951-2938], Robledo-Arnuncio, Juan José [0000-0002-3909-8928], Schueler, S.[0000-0003-0155-5692], Semerikov, Vladimir [0000-0002-2942-8794], Spanu, Ilaria [0000-0002-5682-133X], Mette Tollefsrud, Mari [0000-0002-5939-7845], Vendramin, G. G. [0000-0001-9921-7872], Fonti, Patrick [0000-0002-7070-3292], Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Bárbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares Ros, Fernando, Cavers, Stephen, Fady, Bruno, Alía Miranda, Ricardo, Aravanopoulos, Filippos A., Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent Maldonado, José María, Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna Maria, García Del Barrio, José Manuel, Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le Provost, G., Liesebach, M., Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, T., Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez Valiente, José Alberto, Ramskogler, Kurt, Robledo-Arnuncio, Juan José, Savolainen, Outi, Schueler, S., Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Mette Tollefsrud, Mari, Turion, Norbert, Veisse, Dominique, Vendramin, G. G., Villar, Marc, Westin, Johan, Fonti, Patrick, European Commission, Martínez-Sancho, Elisabet [0000-0003-4413-6818], Slámová, Lenka [0000-0001-8978-0688], Carvalho, Bárbara [0000-0002-4129-2746], Dauphin, Benjamin [0000-0003-0982-4252], Rellstab, Christian [0000-0002-0221-5975], Gugerli, Felix [0000-0003-3878-1845], Opgenoorth, Lars [0000-0003-0737-047X], Heer, Katrin [0000-0002-1036-599X], Knutzen, Florian [0000-0001-9172-4802], von Arx, Georg [0000-0002-8566-4599], Cavers, Stephen [0000-0003-2139-9236], Fady, Bruno [0000-0003-2379-7617], Alía Miranda, Ricardo [0000-0002-9426-0967], Aravanopoulos, Filippos A. [0000-0001-7194-2642], Avanzi, Camilla [0000-0003-1632-5304], Bagnoli, Francesca [0000-0001-6909-0006], Barbas, Evangelos [0000-0002-5760-605X], Bastien, Catherine [0000-0002-9391-6637], Benavides, Raquel [0000-0003-2328-5371], Bernier, Frédéric [0000-0003-4945-7215], Bastias, Cristina C. [0000-0002-2479-2001], Charpentier, Jean-Paul [0000-0002-6029-0498], Climent Maldonado, José María [0000-0002-0815-2645], Danusevicius, Darius [0000-0002-1196-9293], Farsakoglou, Anna Maria [0000-0002-1906-2813], García Del Barrio, José Manuel [0000-0001-7267-6286], Gilg, Olivier [0000-0002-9083-4492], González-Martínez, S. C. [0000-0002-4534-3766], Hurel, Agathe [0000-0002-4853-9123], Kärkkäinen, Katri [0000-0002-3799-3013], Kujala, Sonja T. [0000-0003-0949-6156], Labriola, Mariaceleste [0000-0002-7622-1921], Lascoux, Martin [0000-0003-1699-9042], Lefebvre, Marlène [0000-0002-0929-5744], Le Provost, G. [0000-0003-1561-266X], Liesebach, M. [0000-0001-8840-5026], Malliarou, Ermioni [0000-0003-4478-9173], Matesanz, Silvia [0000-0003-0060-6136], Michotey, Célia [0000-0003-1877-1703], Myking, T. [0000-0002-8207-4542], Notivol, Eduardo [0000-0003-4272-4536], Pakull, Birte [0000-0003-0921-6732], Piotti, Andrea [0000-0002-3324-5325], Plomion, Christophe [0000-0002-3176-2767], Pyhäjärvi, Tanja [0000-0001-6958-5172], Raffin, Annie [0000-0003-2459-4264], Ramírez Valiente, José Alberto [0000-0002-5951-2938], Robledo-Arnuncio, Juan José [0000-0002-3909-8928], Schueler, S.[0000-0003-0155-5692], Semerikov, Vladimir [0000-0002-2942-8794], Spanu, Ilaria [0000-0002-5682-133X], Mette Tollefsrud, Mari [0000-0002-5939-7845], Vendramin, G. G. [0000-0001-9921-7872], Fonti, Patrick [0000-0002-7070-3292], Martínez-Sancho, Elisabet, Slámová, Lenka, Morganti, Sandro, Grefen, Claudio, Carvalho, Bárbara, Dauphin, Benjamin, Rellstab, Christian, Gugerli, Felix, Opgenoorth, Lars, Heer, Katrin, Knutzen, Florian, von Arx, Georg, Valladares Ros, Fernando, Cavers, Stephen, Fady, Bruno, Alía Miranda, Ricardo, Aravanopoulos, Filippos A., Avanzi, Camilla, Bagnoli, Francesca, Barbas, Evangelos, Bastien, Catherine, Benavides, Raquel, Bernier, Frédéric, Bodineau, Guillaume, Bastias, Cristina C., Charpentier, Jean-Paul, Climent Maldonado, José María, Corréard, Marianne, Courdier, Florence, Danusevicius, Darius, Farsakoglou, Anna Maria, García Del Barrio, José Manuel, Gilg, Olivier, González-Martínez, Santiago C., Gray, Alan, Hartleitner, Christoph, Hurel, Agathe, Jouineau, Arnaud, Kärkkäinen, Katri, Kujala, Sonja T., Labriola, Mariaceleste, Lascoux, Martin, Lefebvre, Marlène, Lejeune, Vincent, Le Provost, G., Liesebach, M., Malliarou, Ermioni, Mariotte, Nicolas, Matesanz, Silvia, Michotey, Célia, Milesi, Pascal, Myking, T., Notivol, Eduardo, Pakull, Birte, Piotti, Andrea, Plomion, Christophe, Pringarbe, Mehdi, Pyhäjärvi, Tanja, Raffin, Annie, Ramírez Valiente, José Alberto, Ramskogler, Kurt, Robledo-Arnuncio, Juan José, Savolainen, Outi, Schueler, S., Semerikov, Vladimir, Spanu, Ilaria, Thévenet, Jean, Mette Tollefsrud, Mari, Turion, Norbert, Veisse, Dominique, Vendramin, G. G., Villar, Marc, Westin, Johan, and Fonti, Patrick

Abstract

The dataset presented here was collected by the GenTree project (EU-Horizon 2020), which aims to improve the use of forest genetic resources across Europe by better understanding how trees adapt to their local environment. This dataset of individual tree-core characteristics including ring-width series and whole-core wood density was collected for seven ecologically and economically important European tree species: silver birch (Betula pendula), European beech (Fagus sylvatica), Norway spruce (Picea abies), European black poplar (Populus nigra), maritime pine (Pinus pinaster), Scots pine (Pinus sylvestris), and sessile oak (Quercus petraea). Tree-ring width measurements were obtained from 3600 trees in 142 populations and whole-core wood density was measured for 3098 trees in 125 populations. This dataset covers most of the geographical and climatic range occupied by the selected species. The potential use of it will be highly valuable for assessing ecological and evolutionary responses to environmental conditions as well as for model development and parameterization, to predict adaptability under climate change scenarios.

Published
2020

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