42 results on '"F. Huynh"'
Search Results
2. Potluck: Semi-ontology Alignment for Casual Users.
- Author
-
David F. Huynh, Robert C. Miller, and David R. Karger
- Published
- 2007
- Full Text
- View/download PDF
3. Potluck: Data Mash-Up Tool for Casual Users.
- Author
-
David F. Huynh, Robert C. Miller, and David R. Karger
- Published
- 2007
- Full Text
- View/download PDF
4. Enabling web browsers to augment web sites' filtering and sorting functionalities.
- Author
-
David F. Huynh, Robert C. Miller, and David R. Karger
- Published
- 2006
- Full Text
- View/download PDF
5. Exploring user experience in 'blended reality': moving interactions out of the screen.
- Author
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David F. Huynh, Yan Xu 0011, and Shuo Wang
- Published
- 2006
- Full Text
- View/download PDF
6. Epidemiology and outcome research in CKD 5D
- Author
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L. Coentrao, C. Ribeiro, C. Santos-Araujo, R. Neto, M. Pestana, W. Kleophas, A. Karaboyas, Y. LI, J. Bommer, R. Pisoni, B. Robinson, F. Port, G. Celik, B. Burcak Annagur, M. Yilmaz, T. Demir, F. Kara, K. Trigka, P. Dousdampanis, N. Vaitsis, S. Aggelakou-Vaitsi, K. Turkmen, I. Guney, F. Turgut, L. Altintepe, H. Z. Tonbul, E. Abdel-Rahman, P. Sclauzero, G. Galli, G. Barbati, M. Carraro, G. O. Panzetta, M. Van Diepen, M. Schroijen, O. Dekkers, F. Dekker, A. Sikole, G. Severova- Andreevska, L. Trajceska, S. Gelev, V. Amitov, S. Pavleska- Kuzmanovska, H. Rayner, R. Vanholder, M. Hecking, B. Jung, M. Leung, F. Huynh, T. Chung, S. Marchuk, M. Kiaii, L. Er, R. Werb, C. Chan-Yan, M. Beaulieu, P. Malindretos, P. Makri, G. Zagkotsis, G. Koutroumbas, G. Loukas, E. Nikolaou, M. Pavlou, E. Gourgoulianni, M. Paparizou, M. Markou, E. Syrgani, C. Syrganis, J. Raimann, L. A. Usvyat, V. Bhalani, N. W. Levin, P. Kotanko, X. Huang, P. Stenvinkel, A. R. Qureshi, U. Riserus, T. Cederholm, P. Barany, O. Heimburger, B. Lindholm, J. J. Carrero, J. H. Chang, J. Y. Sung, J. Y. Jung, H. H. Lee, W. Chung, S. Kim, J. S. Han, K. Y. Na, A. Fragoso, A. Pinho, A. Malho, A. P. Silva, E. Morgado, P. Leao Neves, N. Joki, Y. Tanaka, M. Iwasaki, S. Kubo, T. Hayashi, Y. Takahashi, K. Hirahata, Y. Imamura, H. Hase, C. Castledine, J. Gilg, C. Rogers, Y. Ben-Shlomo, F. Caskey, J. S. Sandhu, G. S. Bajwa, S. Kansal, J. Sandhu, A. Jayanti, M. Nikam, L. Ebah, A. Summers, S. Mitra, J. Agar, A. Perkins, R. Simmonds, A. Tjipto, S. Amet, V. Launay-Vacher, M. Laville, A. Tricotel, C. Frances, B. Stengel, J.-Y. Gauvrit, N. Grenier, G. Reinhardt, O. Clement, N. Janus, L. Rouillon, G. Choukroun, G. Deray, A. Bernasconi, R. Waisman, A. P. Montoya, A. A. Liste, R. Hermes, G. Muguerza, R. Heguilen, E. L. Iliescu, V. Martina, M. A. Rizzo, P. Magenta, L. Lubatti, G. Rombola, M. Gallieni, C. Loirat, H. Mellerio, M. Labeguerie, B. Andriss, E. Savoye, M. Lassale, C. Jacquelinet, C. Alberti, Y. Aggarwal, J. Baharani, S. Tabrizian, S. Ossareh, M. Zebarjadi, P. Azevedo, F. Travassos, I. Frade, M. Almeida, J. Queiros, F. Silva, A. Cabrita, R. Rodrigues, C. Couchoud, J. Kitty, S. Benedicte, C. Fergus, C. Cecile, B. Sahar, V. Emmanuel, J. Christian, E. Rene, H. Barahimi, M. Mahdavi-Mazdeh, M. Nafar, M. Petruzzi, M. De Benedittis, M. Sciancalepore, L. Gargano, P. Natale, M. C. Vecchio, V. Saglimbene, F. Pellegrini, G. Gentile, P. Stroumza, L. Frantzen, M. Leal, M. Torok, A. Bednarek, J. Dulawa, E. Celia, R. Gelfman, J. Hegbrant, C. Wollheim, S. Palmer, D. W. Johnson, P. J. Ford, J. C. Craig, G. F. Strippoli, M. Ruospo, B. El Hayek, B. Hayek, E. Baamonde, E. Bosch, J. I. Ramirez, G. Perez, A. Ramirez, A. Toledo, M. M. Lago, C. Garcia-Canton, M. D. Checa, B. Canaud, B. Lantz, A. Granger-Vallee, P. Lertdumrongluk, N. Molinari, J. Ethier, M. Jadoul, B. Gillespie, C. Bond, S. Wang, T. Alfieri, P. Braunhofer, B. Newsome, M. Wang, B. Bieber, M. Guidinger, L. Zuo, X. Yu, X. Yang, J. Qian, N. Chen, J. Albert, Y. Yan, S. Ramirez, M. Beresan, A. Lapidus, M. Canteli, A. Tong, B. Manns, J. Craig, G. Strippoli, M. Mortazavi, B. Vahdatpour, S. Shahidi, A. Ghasempour, D. Taheri, S. Dolatkhah, A. Emami Naieni, M. Ghassami, M. Khan, K. Abdulnabi, P. Pai, M. Vecchio, M. A. Muqueet, M. J. Hasan, M. A. Kashem, P. K. Dutta, F. X. Liu, L. Noe, T. Quock, N. Neil, G. Inglese, M. Motamed Najjar, B. Bahmani, A. Shafiabadi, J. Helve, M. Haapio, P.-H. Groop, C. Gronhagen-Riska, P. Finne, R. Sund, M. Cai, S. Baweja, A. Clements, A. Kent, R. Reilly, N. Taylor, S. Holt, L. Mcmahon, M. Carter, F. M. Van der Sande, J. Kooman, R. Malhotra, G. Ouellet, E. L. Penne, S. Thijssen, M. Etter, A. Tashman, A. Guinsburg, A. Grassmann, C. Barth, C. Marelli, D. Marcelli, G. Von Gersdorff, I. Bayh, L. Scatizzi, M. Lam, M. Schaller, T. Toffelmire, Y. Wang, P. Sheppard, L. Neri, V. A. Andreucci, L. A. Rocca-Rey, S. V. Bertoli, D. Brancaccio, G. De Berardis, G. Lucisano, D. Johnson, A. Nicolucci, C. Bonifati, S. D. Navaneethan, V. Montinaro, M. Zsom, A. Bednarek-Skublewska, G. Graziano, J. N. Ferrari, A. Santoro, A. Zucchelli, G. Triolo, S. Maffei, S. De Cosmo, V. M. Manfreda, L. Juillard, A. Rousset, F. Butel, S. Girardot-Seguin, T. Hannedouche, M. Isnard, Y. Berland, P. Vanhille, J.-P. Ortiz, G. Janin, P. Nicoud, M. Touam, E. Bruce, B. Grace, P. Clayton, A. Cass, S. Mcdonald, Y. Furumatsu, T. Kitamura, N. Fujii, S. Ogata, H. Nakamoto, K. Iseki, Y. Tsubakihara, C.-C. Chien, J.-J. Wang, J.-C. Hwang, H.-Y. Wang, W.-C. Kan, N. Kuster, L. Patrier, A.-S. Bargnoux, M. Morena, A.-M. Dupuy, S. Badiou, J.-P. Cristol, J.-M. Desmet, V. Fernandes, F. Collart, N. Spinogatti, J.-M. Pochet, M. Dratwa, E. Goffin, J. Nortier, D. S. Zilisteanu, M. Voiculescu, E. Rusu, C. Achim, R. Bobeica, S. Balanica, T. Atasie, S. Florence, S. Anne-Marie, L. Michel, C. Cyrille, A. Strakosha, N. Pasko, S. Kodra, N. Thereska, A. Lowney, E. Lowney, R. Grant, M. Murphy, L. Casserly, T. O' Brien, W. D. Plant, J. Radic, D. Ljutic, V. Kovacic, M. Radic, K. Dodig-Curkovic, M. Sain, I. Jelicic, T. Hamano, C. Nakano, S. Yonemoto, A. Okuno, M. Katayama, Y. Isaka, M. Nordio, A. Limido, M. Postorino, M. Nichelatti, M. Khil, I. Dudar, V. Khil, I. Shifris, M. Momtaz, A. R. Soliman, M. I. El Lawindi, P. Dzekova-Vidimliski, S. Pavleska-Kuzmanovska, I. Nikolov, G. Selim, T. Shoji, R. Kakiya, N. Tatsumi-Shimomura, Y. Tsujimoto, T. Tabata, H. Shima, K. Mori, S. Fukumoto, H. Tahara, H. Koyama, M. Emoto, E. Ishimura, Y. Nishizawa, and M. Inaba
- Subjects
Transplantation ,medicine.medical_specialty ,Nephrology ,business.industry ,Epidemiology ,Medicine ,business ,Intensive care medicine ,Outcome (game theory) - Published
- 2012
7. Potluck: Data Mash-Up Tool for Casual Users
- Author
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David R. Karger, David F. Huynh, and Robert C. Miller
- Subjects
Computer Networks and Communications ,Computer science ,Construct (python library) ,Drag and drop ,computer.software_genre ,Data modeling ,Human-Computer Interaction ,World Wide Web ,Human–computer interaction ,Mashup ,Simultaneous editing ,User interface ,Semantic Web ,computer ,Software ,Data integration - Abstract
As more and more reusable structured data appears on the Web, casual users will want to take into their own hands the task of mashing up data rather than wait for mash-up sites to be built that address exactly their individually unique needs. In this paper, we present Potluck, a Web user interface that let’s casual users — those without programming skills and data modeling expertise — mash up data themselves. Potluck is novel in its use of drag and drop for merging fields, its integration and extension of the faceted browsing paradigm for focusing on subsets of data to align, and its application of simultaneous editing for cleaning up data syntactically. Potluck also lets the user construct rich visualizations of data in-place as the user aligns and cleans up the data. This iterative process of integrating the data while constructing useful visualizations is desirable when the user is unfamiliar with the data at the beginning — a common case — and wishes to get immediate value out of the data without having to spend the overhead of completely and perfectly integrating the data first. A user study on Potluck indicated that it was usable and learnable, and elicited excitement from programmers who, even with their programming skills, previously had great difficulties performing data integration.
- Published
- 2008
8. Piggy Bank: Experience the Semantic Web Inside Your Web Browser
- Author
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David R. Karger, David F. Huynh, and Stefano Mazzocchi
- Subjects
Web standards ,Web server ,Computer Networks and Communications ,business.industry ,Computer science ,Information access ,Data scraping ,Static web page ,computer.software_genre ,Web API ,Social Semantic Web ,Human-Computer Interaction ,World Wide Web ,Annotation ,Web page ,Semantic Web Stack ,Web content ,business ,Semantic Web ,computer ,Software ,Data Web ,PATH (variable) - Abstract
The Semantic Web Initiative envisions a Web wherein information is offered free of presentation, allowing more effective exchange and mixing across web sites and across web pages. But without substantial Semantic Web content, few tools will be written to consume it; without many such tools, there is little appeal to publish Semantic Web content. To break this chicken-and-egg problem, thus enabling more flexible information access, we have created a web browser extension called Piggy Bank that lets users make use of Semantic Web content within Web content as users browse the Web. Wherever Semantic Web content is not available, Piggy Bank can invoke screenscrapers to re-structure information within web pages into Semantic Web format. Through the use of Semantic Web technologies, Piggy Bank provides direct, immediate benefits to users in their use of the existing Web. Thus, the existence of even just a few Semantic Web-enabled sites or a few scrapers already benefits users. Piggy Bank thereby offers an easy, incremental upgrade path to users without requiring a wholesale adoption of the Semantic Web's vision. To further improve this Semantic Web experience, we have created Semantic Bank, a web server application that lets Piggy Bank users share the Semantic Web information they have collected, enabling collaborative efforts to build sophisticated Semantic Web information repositories through simple, everyday's use of Piggy Bank.
- Published
- 2007
9. Potluck: Semi-ontology Alignment for Casual Users
- Author
-
David R. Karger, David F. Huynh, and Robert C. Miller
- Subjects
World Wide Web ,Computer science ,Mashup ,computer.file_format ,Simultaneous editing ,RDF ,User interface ,computer.software_genre ,Semantic Web ,computer ,Ontology alignment ,Data modeling - Abstract
Potluck is a web user interface (Figure 1) that lets casual users-- those without programming skills and data modeling expertise--repurpose heterogeneous Semantic Web data. It lets users merge, navigate, visualize, and clean up data all at the same time, using direct visual manipulation. This iterative process of integrating the data while constructing useful visualizations is desirable when the user is unfamiliar with the data at the beginning--a common case--and wishes to get immediate value out of the data without having to spend the overhead of completely and perfectly integrating the data first.
- Published
- 2007
10. Potluck: Data Mash-Up Tool for Casual Users
- Author
-
David R. Karger, Robert C. Miller, and David F. Huynh
- Subjects
Human–computer interaction ,Computer science ,Mashup ,Construct (python library) ,Drag and drop ,Simultaneous editing ,User interface ,computer.software_genre ,USable ,computer ,Data modeling ,Data integration - Abstract
As more and more reusable structured data appears on the Web, casual users will want to take into their own hands the task of mashing up data rather than wait for mash-up sites to be built that address exactly their individually unique needs. In this paper, we present Potluck, a Web user interface that let's casual users-those without programming skills and data modeling expertise-mash up data themselves. Potluck is novel in its use of drag and drop for merging fields, its integration and extension of the faceted browsing paradigm for focusing on subsets of data to align, and its application of simultaneous editing for cleaning up data syntactically. Potluck also lets the user construct rich visualizations of data in-place as the user aligns and cleans up the data. This iterative process of integrating the data while constructing useful visualizations is desirable when the user is unfamiliar with the data at the beginning-a common case-and wishes to get immediate value out of the data without having to spend the overhead of completely and perfectly integrating the data first. A user study on Potluck indicated that it was usable and learnable, and elicited excitement from programmers who, even with their programming skills, previously had great difficulties performing data integration.
- Published
- 2007
11. Exploring user experience in 'blended reality'
- Author
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Shuo Wang, David F. Huynh, and Yan Xu
- Subjects
business.industry ,Computer science ,media_common.quotation_subject ,ComputingMilieux_PERSONALCOMPUTING ,Illusion ,Window (computing) ,Entertainment ,User experience design ,Computer graphics (images) ,Mediation ,Augmented reality ,business ,Video game ,media_common ,Avatar - Abstract
Video game players often learn to map their physical actions (e.g., pressing buttons) onto their on-screen avatars' actions (e.g., wielding swords) in order to play. We explored the experience resulted from eliminating this mapping by modeling the screen as a "window" through which virtual objects enter the player's physical space, and the player interacts with them directly without the mediation of an avatar. We define this interaction as "Blended Reality" (BR). We designed, developed, and evaluated a BR game prototype called "Apple Yard" in which the player was to use a wand to hit apples flying out of the screen. A camera was used to track the positions of the player's eyes and wand, and the 3D game scene was rendered accordingly to create the illusion of looking through a window. A user tests experiment conducted on this prototypes indicated BR's potential in camera-based entertainment.
- Published
- 2006
12. Time quilt
- Author
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Steven M. Drucker, Curtis G. Wong, David F. Huynh, and Patrick Baudisch
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World Wide Web ,Task (computing) ,Information retrieval ,Computer science ,Thumbnail ,Digital photography ,Quilt ,Timeline ,Visual search tasks ,Scale (map) - Abstract
In the absence of manual organization of large digital photo collections, the photos ' visual content and creation dates can help support time-based visual search tasks. Current zoomable photo browsers are designed to support visual searches by maximizing screenspace usage. However, their space-filling layouts fail to convey temporal order effectively. We propose a novel layout called time quilt that trades off screenss-pace usage for better presentation of temporal order. In an experimental comparison of space-filling, linear timeline, and time quilt layouts, participants carried out the task of finding photos in their personal photo collections averaging 4,000 items. They performed 45% faster on time quilt.Furthermore, while current zoomable photo browsers are designed for visual searches,this support does not scale to thousands of photos: individual thumbnails become less informative as they grow smaller. We found a subjective preference for the use of representative photos to provide an overview for visual searches in place of the diminishing thumbnails.
- Published
- 2005
13. Piggy Bank: Experience the Semantic Web Inside Your Web Browser
- Author
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David R. Karger, Stefano Mazzocchi, and David F. Huynh
- Subjects
Web standards ,Web server ,medicine.medical_specialty ,Web 2.0 ,Web development ,Computer science ,computer.software_genre ,Web API ,Social Semantic Web ,World Wide Web ,Web design ,Web page ,Semantic analytics ,Website Parse Template ,medicine ,Web navigation ,Semantic Web Stack ,RDF ,Semantic Web ,Data Web ,business.industry ,Static web page ,computer.file_format ,Web application security ,Digital library ,Data model ,The Internet ,Web mapping ,Web content ,Web service ,business ,Web intelligence ,computer ,Web modeling - Abstract
The Semantic Web Initiative envisions a Web wherein information is offered free of presentation, allowing more effective exchange and mixing across web sites and across web pages. But without substantial Semantic Web content, few tools will be written to consume it; without many such tools, there is little appeal to publish Semantic Web content. To break this chicken-and-egg problem, thus enabling more flexible informa-tion access, we have created a web browser extension called Piggy Bankthat lets users make use of Semantic Web content within Web content as users browse the Web. Wherever Semantic Web content is not available, Piggy Bank can invoke screenscrapers to re-structure information within web pages into Semantic Web format. Through the use of Semantic Web technologies, Piggy Bank provides direct, immediate benefits to users in their use of the existing Web. Thus, the ex-istence of even just a few Semantic Web-enabled sites or a few scrapers already benefits users. Piggy Bank thereby offers an easy, incremental upgrade path to users without requiring a wholesale adoption of the Semantic Web's vision. To further improve this Semantic Web experience, we have created Semantic Bank, a web server application that lets Piggy Bank users share the Semantic Web information they have collected, enabling collaborative efforts to build so-phisticated Semantic Web information repositories through simple, everyday's use of Piggy Bank.
- Published
- 2005
14. User interface continuations
- Author
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Robert C. Miller, David R. Karger, David F. Huynh, and Dennis Quan
- Subjects
Continuation ,First-class citizen ,Programming language ,Computer science ,Natural user interface ,Human–computer interaction ,Callback ,10-foot user interface ,Dialog box ,User interface ,computer.software_genre ,computer ,User interface design - Abstract
Dialog boxes that collect parameters for commands often create ephemeral, unnatural interruptions of a program's normal execution flow, encouraging the user to complete the dialog box as quickly as possible in order for the program to process that command. In this paper we examine the idea of turning the act of collecting parameters from a user into a first class object called a user interface continuation. Programs can create user interface continuations by specifying what information is to be collected from the user and supplying a callback (i.e., a continuation) to be notified with the collected information. A partially completed user interface continuation can be saved as a new command, much as currying and partially evaluating a function with a set of parameters produces a new function. Furthermore, user interface continuations, like other continuation-passing paradigms, can be used to allow program execution to continue uninterrupted while the user determines a command's parameters at his or her leisure.
- Published
- 2003
15. Haystack
- Author
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Dennis Quan, Vineet Sinha, David R. Karger, and David F. Huynh
- Subjects
World Wide Web ,Metadata ,Data model (ArcGIS) ,Computer science ,Interface (Java) ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,computer.file_format ,RDF ,Drag and drop ,Haystack ,User interface ,computer ,Semantic Web - Abstract
1. OVERVIEW In this demonstration we present Haystack, an environment that allows users to easily manage their documents, e-mail, appointments, tasks, and other information [1]. Haystack uses a semistructured data model to describe the connections between different documents in a user’s corpus as well as the metadata concerning each document. This amalgamation provides users with a unified framework for managing all of their information, e.g., documents, e-mails, etc., through a single interface. Furthermore, Haystack’s user interface exposes general tools for navigating the various kinds of information found in users’ corpora.
- Published
- 2003
16. Haystack: A Platform for Authoring End User Semantic Web Applications
- Author
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David R. Karger, Dennis Quan, and David F. Huynh
- Subjects
Web standards ,Computer science ,RDF Schema ,computer.software_genre ,Semantic desktop ,Social Semantic Web ,Data modeling ,World Wide Web ,Semantic analytics ,SPARQL ,Semantic Web Stack ,RDF ,Cwm ,Semantic Web ,computer.programming_language ,business.industry ,Semantic Web Rule Language ,computer.file_format ,Linked data ,HTML ,Metadata ,Simple Knowledge Organization System ,The Internet ,Web service ,User interface ,business ,computer - Abstract
The Semantic Web promises to open innumerable opportunities for automation and information retrieval by standardizing the protocols for metadata exchange. However, just as the success of the World Wide Web can be attributed to the ease of use and ubiquity of Web browsers, we believe that the unfolding of the Semantic Web vision depends on users getting powerful but easy-to-use tools for managing their information. But unlike HTML, which can be easily edited in any text editor, RDF is more complicated to author and does not have an obvious presentation mechanism. Previous work has concentrated on the ideas of generic RDF graph visualization and RDF Schema-based form generation. In this paper, we present a comprehensive platform for constructing end user applications that create, manipulate, and visualize arbitrary RDF-encoded information, adding another layer to the abstraction cake. We discuss a programming environment specifically designed for manipulating RDF and introduce user interface concepts on top that allow the developer to quickly assemble applications that are based on RDF data models. Also, because user interface specifications and program logic are themselves describable in RDF, applications built upon our framework enjoy properties such as network updatability, extensibility, and end user customizability - all desirable characteristics in the spirit of the Semantic Web.
- Published
- 2003
17. Bubble formation in 'simple' and complex liquids
- Author
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Nelly Bonifaci, R. Kattan, F.M.J. McCluskey, André Denat, and F. Huynh
- Subjects
SIMPLE (dark matter experiment) ,Negative voltage ,Argon ,Cyclohexane ,Bubble ,Electric breakdown ,Analytical chemistry ,chemistry.chemical_element ,Physics::Fluid Dynamics ,Current pulse ,chemistry.chemical_compound ,chemistry ,Chemical physics ,Liquid bubble ,Physics::Chemical Physics - Abstract
In this paper we examine the formation of bubbles in a point to plane geometry in different liquids: a synthetic insulating oil-monobenzyltoluene (BT) and a liquefied atomic gas (argon), under a continuous negative voltage. It has already been shown that in highly purified aliphatic hydrocarbons (e.g. cyclohexane) a bubble is systematically produced following a current pulse, and that these pulses occur at a frequency of the order of kHz under similar conditions to those here. We compare phenomena in the three liquids and explain the observed differences and similarities. >
- Published
- 2002
18. Charge exchange spectroscopy of Fe7+,8+,9+ with He
- Author
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D. Hitz, M. Druetta, and F. Huynh
- Subjects
Range (particle radiation) ,Chemistry ,Analytical chemistry ,chemistry.chemical_element ,Atomic physics ,Spectroscopy ,Spectral line ,Helium ,Charge exchange ,Ion - Abstract
Optical spectroscopy of the charge exchange collision between Feq+ ions and He has been done at an energy of 15 qkeV in the spectral range 28–80 nm. New lines in the Fe VII–VIII–IX spectra have been observed.
- Published
- 1993
19. Special issue: The Web of Data
- Author
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Axel Polleres and David F. Huynh
- Subjects
Human-Computer Interaction ,World Wide Web ,Computer Networks and Communications ,Computer science ,Semantic Web ,Software - Published
- 2009
20. Assessment of tumour size and its relationship to nodal involvement in multifocal and multicentric breast cancer
- Author
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K. Rodins, Jane E. Dahlstrom, Angela Rezo, Bruce Shadbolt, F. Huynh, Yanping Zhang, and Alison Davis
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Tumour size ,Internal medicine ,Medicine ,Multicentric breast cancer ,business ,Staging system ,Nodal involvement - Abstract
10602 Background: The AJCC/UICC staging system categorises tumour size in multifocal and multicentric breast cancer (MMBC) using the largest dimension of the largest focus of tumour. This under-estimates the total tumour burden and therefore may under-estimate the potential of these tumours to metastasise. This study tests the hypothesis that an aggregate measurement of tumour size in MMBC is more closely related to nodal status than the size of the largest focus. Methods: This prospective cohort study involved women with ipsilateral invasive breast cancer with known nodal status using data from the ACT & SENSW BCTG database from July 1997 to June 2004. Pathology reports were reviewed to obtain tumour size in the unifocal group and nodal status in all women. The histopathology of MMBC cases were reviewed measuring all tumour foci that were recorded as: (1) the diameter of the largest deposit (LD), (2) the aggregate diameter (AD) of all deposits, and (3) a calculation of the aggregate volume (AV) using the largest dimension of each focus. The MMBC dimensions were compared with unifocal cancers and against nodal status using a multivariate logistic regression analysis and compared against each other using a stepwise method to determine which method is most predictive of nodal involvement. Results: 795 women met the criteria for study entry: 139 (17.5%) had MMBC and 656 (82.5%) had unifocal disease. When adjusting for tumour size method of measurement in MMBC, there was strong agreement between the AD MMBC and unifocal groups in terms of nodal status (p=0.7). Conversely, there were statistically significant differences in nodal status using LD (p=0.008) and AV (p=0.02) measurements in MMBC when compared to the unifocal group. Within the MMBC group the aggregated diameter measure was most significantly related to nodal status (p=0.001). Conclusions: The results of this study confirm that the current tumour staging system in MMBC under-estimates the potential for nodal spread and that aggregate diameter is more clinically useful. Nodal status is used in this study as a surrogate for tumour behaviour. Further studies are underway to assess relationship of aggregate size of MMBC to relapse and survival. No significant financial relationships to disclose.
- Published
- 2007
21. Cystic lymphangioma presenting as an acute abdomen in an adult male with congenital aortic stenosis.
- Author
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Satheakeerthy S, Sharma V, and Huynh F
- Abstract
Abdominal cystic lymphangioma rarely presents as an acute abdomen. In this article, we describe a young adult male with congenital aortic stenosis who initially presented with abdominal pain and raised inflammatory markers. The imaging in the form of a computed tomography scan was unfortunately inconclusive. In the evolution of this diagnostic dilemma, we describe the importance of early operative management as well as explore the link between cardiac and lymphatic malformations., (© 2023 The Authors. Published by Elsevier Inc.)
- Published
- 2023
- Full Text
- View/download PDF
22. Biodegradable Polyesters and Low Molecular Weight Polyethylene in Soil: Interrelations of Material Properties, Soil Organic Matter Substances, and Microbial Community.
- Author
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Šerá J, Huynh F, Ly F, Vinter Š, Kadlečková M, Krátká V, Máčalová D, Koutný M, and Wallis C
- Subjects
- Plastics, Polyethylene, Molecular Weight, Polymers, Bacteria genetics, Microbial Consortia, Soil Microbiology, Polyesters, Soil
- Abstract
Conventional and also biodegradable polymer microplastics have started to be broadly present in the environment, if they end up in soil, they may influence both abiotic and biotic soil properties. In this study, the interactions of polyethylene wax together with three biodegradable polyesters PLA, PHB and PBAT with a soil matrix were investigated over a 1-year incubation period. Soil organic matter content was measured using UV-VIS, the microbial biomass amount was measured using qPCR, the mineralisation of polymers was measured using UGA 3000, the surface of polymers was observed with SEM, live/dead microorganisms were determined by fluorescent microscopy and microbial consortia diversity was analyzed using NGS. The amount of humic substances was generally higher in incubations with slowly degrading polyesters, but the effect was temporary. The microbial biomass grew during the incubations; the addition of PHB enhanced fungal biomass whereas PE wax enhanced bacterial biomass. Fungal microbial consortia diversity was altered in incubations with PHB and PBAT. Interestingly, these two polyesters were also covered in biofilm, probably fungal. No such trend was observed in a metagenomic analysis of bacteria, although, bacterial biofilm was probably formed on the PE520 surface. Different methods confirmed the effect of certain polymers on the soil environment.
- Published
- 2022
- Full Text
- View/download PDF
23. Connexin Lateralization Contributes to Male Susceptibility to Atrial Fibrillation.
- Author
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Thibault S, Ton AT, Huynh F, and Fiset C
- Subjects
- Animals, Connexin 43 genetics, Connexins genetics, Connexins metabolism, Female, Heart Atria metabolism, Humans, Male, Mice, RNA, Messenger metabolism, Sex Characteristics, Atrial Fibrillation metabolism, Connexin 43 metabolism
- Abstract
Men have a higher risk of developing atrial fibrillation (AF) than women, though the reason for this is unknown. Here, we compared atrial electrical and structural properties in male and female mice and explored the contribution of sex hormones. Cellular electrophysiological studies revealed that action potential configuration, Na
+ and K+ currents were similar in atrial myocytes from male and female mice (4-5 months). Immunofluorescence showed that male atrial myocytes had more lateralization of connexins 40 (63 ± 4%) and 43 (66 ± 4%) than females (Cx40: 45 ± 4%, p = 0.006; Cx43: 44 ± 4%, p = 0.002), with no difference in mRNA expression. Atrial mass was significantly higher in males. Atrial myocyte dimensions were also larger in males. Atrial fibrosis was low and similar between sexes. Orchiectomy (ORC) abolished sex differences in AF susceptibility (M: 65%; ORC: 38%, p = 0.050) by reducing connexin lateralization and myocyte dimensions. Ovariectomy (OVX) did not influence AF susceptibility (F: 42%; OVX: 33%). This study shows that prior to the development of age-related remodeling, male mice have more connexin lateralization and larger atria and atrial myocyte than females. Orchiectomy reduced AF susceptibility in males by decreasing connexin lateralization and atrial myocyte size, supporting a role for androgens. These sex differences in AF substrates may contribute to male predisposition to AF.- Published
- 2022
- Full Text
- View/download PDF
24. Atrial Electrical Remodeling in Mice With Cardiac-Specific Overexpression of Angiotensin II Type 1 Receptor.
- Author
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Demers J, Ton AT, Huynh F, Thibault S, Ducharme A, Paradis P, Nemer M, and Fiset C
- Subjects
- Angiotensin II metabolism, Angiotensin II pharmacology, Animals, Heart Atria, Mice, Mice, Transgenic, Myocytes, Cardiac metabolism, Protein Kinase C-alpha metabolism, Receptor, Angiotensin, Type 1 genetics, Receptor, Angiotensin, Type 1 metabolism, Atrial Remodeling
- Abstract
Background Elevated angiotensin II levels are thought to play an important role in atrial electrical and structural remodeling associated with atrial fibrillation. However, the mechanisms by which this remodeling occurs are still unclear. Accordingly, we explored the effects of angiotensin II on atrial remodeling using transgenic mice overexpressing angiotensin II type 1 receptor (AT1R) specifically in cardiomyocytes. Methods and Results Voltage-clamp techniques, surface ECG, programmed electrical stimulations along with quantitative polymerase chain reaction, Western blot, and Picrosirius red staining were used to compare the atrial phenotype of AT1R mice and their controls at 50 days and 6 months. Atrial cell capacitance and fibrosis were increased only in AT1R mice at 6 months, indicating the presence of structural remodeling. Ca
2+ ( ICaL ) and K+ currents were not altered by AT1R overexpression (AT1R at 50 days). However, ICaL density and CaV 1.2 messenger RNA expression were reduced by structural remodeling (AT1R at 6 months). Conversely, Na+ current ( INa ) was reduced (-65%) by AT1R overexpression (AT1R at 50 days) and the presence of structural remodeling (AT1R at 6 months) yields no further effect. The reduced INa density was not explained by lower NaV 1.5 expression but was rather associated with an increase in sarcolemmal protein kinase C alpha expression in the atria, suggesting that chronic AT1R activation reduced INa through protein kinase C alpha activation. Furthermore, connexin 40 expression was reduced in AT1R mice at 50 days and 6 months. These changes were associated with delayed atrial conduction time, as evidenced by prolonged P-wave duration. Conclusions Chronic AT1R activation leads to slower atrial conduction caused by reduced INa density and connexin 40 expression.- Published
- 2022
- Full Text
- View/download PDF
25. Minimally invasive (laparoscopic and robot-assisted) versus open approach for central pancreatectomies: a single-center experience.
- Author
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Huynh F, Cruz CJ, Hwang HK, Lee WJ, and Kang CM
- Subjects
- Humans, Minimally Invasive Surgical Procedures, Pancreatectomy, Retrospective Studies, Treatment Outcome, Laparoscopy adverse effects, Pancreatic Neoplasms surgery, Robotic Surgical Procedures adverse effects, Robotics
- Abstract
Background: There continues to be an interest in minimally invasive approaches to pancreatic surgery. At our institution, there has been a progressive change from an open to minimally invasive surgery (MIS) (laparoscopic, robotic, or laparoscopic-robotic) approach for central pancreatectomies (CP). The aim of this study was to evaluate surgical outcomes with open CP (O-CP) versus minimally invasive CP (MI-CP)., Methods: A retrospective medical review of patients who underwent CP between 1993 and 2018 at Yonsei University Health System, Seoul, Korea was performed. Short-term perioperative outcomes were compared between O-CP and MI-CP., Results: Thirty-one CPs (11 open, 20 MIS) were identified during the study period. No difference was observed in admission days between O-CP and MI-CP (21.2 vs. 16.7 days, p = 0.340), although operating time was significantly increased in the MI-CP group (296.8 vs. 374.8 min, p = 0.036). Blood loss was significantly less in MI-CP vs. O-CP (807.1 vs. 214.0 mls, p = 0.001), with no difference in post-operative new-onset diabetes (9% vs. 5%). The overall post-operative pancreatic fistula rate was 25.8%, and no significant difference between O-CP and MI-CP or complication rates (45% vs. 40%) was observed., Conclusion: Despite increased operative time, MI-CP is feasible and comparable to conventional O-CP with regard to surgical outcomes in well-selected patients., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
26. Temperate UV-Accelerated Weathering Cycle Combined with HT-GPC Analysis and Drop Point Testing for Determining the Environmental Instability of Polyethylene Films.
- Author
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Moreira C, Lloyd R, Hill G, Huynh F, Trufasila A, Ly F, Sawal H, and Wallis C
- Abstract
Polyethylene films are one of the most frequently used packaging materials in our society, due to their combination of strength and flexibility. An unintended consequence of this high use has been the ever-increasing accumulation of polyethylene films in the natural environment. Previous attempts to understand their deterioration have either focused on their durability using polymer analysis; or they have focused on changes occurring during outdoor exposure. Herein, this study combines those strategies into one, by studying the chemical and physical changes in the polyethylene structure in a laboratory using molecular weight and IR spectroscopic mapping analysis, combined with temperate UV-accelerated weathering cycles. This approach has been correlated to real-world outdoor exposure timeframes by parallel testing of the sample polyethylene films in Florida and France. The formation of polyethylene microparticles or polyethylene waxes is elucidated through comparison of drop point testing and molecular weight analysis.
- Published
- 2021
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- View/download PDF
27. Correlation of a Temperate UV-Weathering Cycle to Outdoor Exposure for the Determination of the Environmental Instability of Polyethylene Films Using HT-GPC Analysis.
- Author
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Hill G, Moreira C, Huynh F, Trufasila A, Ly F, Lloyd R, Sawal H, and Wallis CJ
- Abstract
Accelerated UV-weathering cycles are predominately used for evaluating the durability of plastic materials, particularly polyethylene (PE) films. The point of failure for this testing is usually the loss of a physical property, such as the loss of tensile strength over time. For plastics designed to be instable under environmental conditions, the accelerated weathering cycles are yet to be defined and their correlation to outdoor exposure has yet to be made. This study demonstrates the utility of a newly defined temperate accelerated UV-weathering cycle, recently codified in the British Standard PAS 9017:2020. In addition, the effectiveness of the laboratory weathering cycle has been correlated to real-world outdoor exposure through simultaneous testing of the same samples at a specialist outdoor exposure site in Florida. The utility of the testing methodology and the performance of the polyethylene samples was demonstrated through the use of High Temperature Gel Permeation Chromatography (HT-GPC) analysis. The data led to a detailed insight into the physico-chemical changes occurring in the PE films upon exposure to environmental stimuli. By comparison, and surprisingly, the techniques employed appear to provide an insight into the processes in which secondary micro-particles of PE are formed from macro-polyethylene samples. The temperate accelerated UV-weathering cycle over 14 days demonstrated an approximate correlation to 90 days of outdoor exposure in Florida for the PE film studied.
- Published
- 2021
- Full Text
- View/download PDF
28. Redesigning the Molecular Choreography to Prevent Hydroxylation in Germacradien-11-ol Synthase Catalysis.
- Author
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Srivastava PL, Escorcia AM, Huynh F, Miller DJ, Allemann RK, and van der Kamp MW
- Abstract
Natural sesquiterpene synthases have evolved to make complex terpenoids by quenching reactive carbocations either by proton transfer or by hydroxylation (water capture), depending on their active site. Germacradien-11-ol synthase (Gd11olS) from Streptomyces coelicolor catalyzes the cyclization of farnesyl diphosphate (FDP) into the hydroxylated sesquiterpene germacradien-11-ol. Here, we combine experiment and simulation to guide the redesign of its active site pocket to avoid hydroxylation of the product. Molecular dynamics simulations indicate two regions between which water molecules can flow that are responsible for hydroxylation. Point mutations of selected residues result in variants that predominantly form a complex nonhydroxylated product, which we identify as isolepidozene. Our results indicate how these mutations subtly change the molecular choreography in the Gd11olS active site and thereby pave the way for the engineering of terpene synthases to make complex terpenoid products., Competing Interests: The authors declare no competing financial interest., (© 2021 American Chemical Society.)
- Published
- 2021
- Full Text
- View/download PDF
29. Initial experiences of robotic SP cholecystectomy: a comparative analysis with robotic Si single-site cholecystectomy.
- Author
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Cruz CJ, Huynh F, Kang I, Lee WJ, and Kang CM
- Abstract
Purpose: The da Vinci SP robotic surgical system (Intuitive Surgical) offers pure SP with 4 lumens, which accommodates the fully-wristed endoscope and 3 arms with multijoint feature. We herein present our initial experience of the da Vinci SP surgical system in robotic single-site cholecystectomy., Methods: Thirty consecutive patients with a preoperative diagnosis of gallstones and/or chronic cholecystitis who underwent robotic SP cholecystectomy (RSPC) using da Vinci SP surgical system from January to May 2019 were reviewed. The perioperative outcomes were assessed and compared with those performed using Si-robotic single-site surgical system., Results: Mean docking time was 5.2 minutes. The mean actual dissection time was 14.6 minutes while the mean operation time was 75.1 minutes. Postoperative course was unremarkable and patients were discharged after a mean hospital stay of 1.5 days. In comparative analysis, operation time (109.5 ± 30.0 minutes vs . 75.1 ± 17.5 minutes, P = 0.001), docking time (11.9 ± 4.3 minutes vs . 5.2 ± 1.9 minutes, P = 0.001), actual dissection time (34.6 ± 18.4 minutes vs . 14.6 ± 5.1 minutes, P = 0.001), console time (58.7 ± 23.0 minutes vs . 32.4 ± 11.6 minutes, P = 0.001), immediate postoperative pain (4.6 ± 1.3 vs . 3.2 ± 1.0, P = 0.001), and pain prior to discharge (2.0 ± 0.6 vs . 1.4 ± 0.0, P = 0.002) were significantly improved in RSPC., Conclusion: RSPC is feasible, safe, and effective. The perioperative outcomes are better compared with Si-robotic single-site surgical systems., Competing Interests: Conflict of Interest: No potential conflict of interest relevant to this article was reported., (Copyright © 2021, the Korean Surgical Society.)
- Published
- 2021
- Full Text
- View/download PDF
30. Accelerating Biphasic Biocatalysis through New Process Windows.
- Author
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Huynh F, Tailby M, Finniear A, Stephens K, Allemann RK, and Wirth T
- Subjects
- Biocatalysis, Carbon-Carbon Lyases chemistry, Molecular Structure, Polyisoprenyl Phosphates chemistry, Sesquiterpenes chemistry, Stereoisomerism, Carbon-Carbon Lyases metabolism, Polyisoprenyl Phosphates metabolism, Sesquiterpenes metabolism
- Abstract
Process intensification through continuous flow reactions has increased the production rates of fine chemicals and pharmaceuticals. Catalytic reactions are accelerated through an unconventional and unprecedented use of a high-performance liquid/liquid counter current chromatography system. Product generation is significantly faster than in traditional batch reactors or in segmented flow systems, which is exemplified through stereoselective phase-transfer catalyzed reactions. This methodology also enables the intensification of biocatalysis as demonstrated in high yield esterifications and in the sesquiterpene cyclase-catalyzed synthesis of sesquiterpenes from farnesyl diphosphate as high-value natural products with applications in medicine, agriculture and the fragrance industry. Product release in sesquiterpene synthases is rate limiting due to the hydrophobic nature of sesquiterpenes, but a biphasic system exposed to centrifugal forces allows for highly efficient reactions., (© 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.)
- Published
- 2020
- Full Text
- View/download PDF
31. Selective Hydroboration-Oxidation of Terminal Alkenes under Flow Conditions.
- Author
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Elsherbini M, Huynh F, Dunbabin A, Allemann RK, and Wirth T
- Abstract
An efficient flow process for the selective hydroboration and oxidation of different alkenes using 9-borabicyclo(3.3.1)nonane (9-BBN) allows facile conversion in high productivity (1.4 g h
-1 ) of amorpha-4,11-diene to the corresponding alcohol, which is an advanced intermediate in the synthesis of the antimalarial drug artemisinin. The in situ reaction of borane and 1,5-cyclooctadiene using a simple flow generator proved to be a cost efficient solution for the generation of 9-BBN., (© 2020 The Authors. Published by Wiley-VCH GmbH.)- Published
- 2020
- Full Text
- View/download PDF
32. Spontaneous hepaticoduodenal fistula following extended right hemihepatectomy.
- Author
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Huynh F, Junnarkar SP, Huey TCW, Punamiya SJ, and Woon WWL
- Subjects
- Adult, Bile Duct Diseases diagnostic imaging, Carcinoma, Hepatocellular surgery, Digestive System Fistula diagnostic imaging, Duodenal Diseases diagnostic imaging, Humans, Male, Bile Duct Diseases etiology, Digestive System Fistula etiology, Duodenal Diseases etiology, Hepatectomy adverse effects, Hepatic Duct, Common, Liver Neoplasms surgery
- Published
- 2019
- Full Text
- View/download PDF
33. Localized lymphoid hyperplasia of the spleen mimicking metastatic colorectal adenocarcinoma.
- Author
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Huynh F, McLean C, and Smith M
- Subjects
- Adenocarcinoma diagnosis, Adult, Colorectal Neoplasms diagnosis, Diagnosis, Differential, Female, Humans, Hyperplasia, Lymphoproliferative Disorders pathology, Positron-Emission Tomography, Splenic Diseases pathology, Tomography, X-Ray Computed, Adenocarcinoma secondary, Colorectal Neoplasms pathology, Lymphoproliferative Disorders diagnosis, Spleen pathology, Splenic Diseases diagnosis
- Published
- 2019
- Full Text
- View/download PDF
34. Sesquiterpene Synthase-Catalysed Formation of a New Medium-Sized Cyclic Terpenoid Ether from Farnesyl Diphosphate Analogues.
- Author
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Huynh F, Grundy DJ, Jenkins RL, Miller DJ, and Allemann RK
- Subjects
- Alkyl and Aryl Transferases isolation & purification, Biocatalysis, Cyclization, Escherichia coli genetics, Molecular Conformation, Sesquiterpenes chemistry, Solidago enzymology, Stereoisomerism, Alkyl and Aryl Transferases chemistry, Polyisoprenyl Phosphates chemistry, Sesquiterpenes chemical synthesis
- Abstract
Terpene synthases catalyse the first step in the conversion of prenyl diphosphates to terpenoids. They act as templates for their substrates to generate a reactive conformation, from which a Mg
2+ -dependent reaction creates a carbocation-PPi ion pair that undergoes a series of rearrangements and (de)protonations to give the final terpene product. This tight conformational control was exploited for the (R)-germacrene A synthase- and germacradien-4-ol synthase-catalysed formation of a medium-sized cyclic terpenoid ether from substrates containing nucleophilic functional groups. Farnesyl diphosphate analogues with a 10,11-epoxide or an allylic alcohol were efficiently converted to a 11-membered cyclic terpenoid ether that was characterised by HRMS and NMR spectroscopic analyses. Further experiments showed that other sesquiterpene synthases, including aristolochene synthase, δ-cadinene synthase and amorphadiene synthase, yielded this novel terpenoid from the same substrate analogues. This work illustrates the potential of terpene synthases for the efficient generation of structurally and functionally novel medium-sized terpene ethers., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2018
- Full Text
- View/download PDF
35. Sesquiterpene Synthase-Catalyzed Conversion of a Farnesyl Diphosphate Analogue to a Nonnatural Terpenoid Ether.
- Author
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Huynh F, Miller DJ, and Allemann RK
- Subjects
- Alkyl and Aryl Transferases genetics, Biocatalysis, Cyclization, Escherichia coli genetics, Ethers chemistry, Ethers metabolism, Genetic Vectors genetics, Recombinant Proteins genetics, Recombinant Proteins metabolism, Streptomyces coelicolor genetics, Streptomyces coelicolor metabolism, Alkyl and Aryl Transferases metabolism, Industrial Microbiology methods, Polyisoprenyl Phosphates chemistry, Polyisoprenyl Phosphates metabolism, Sesquiterpenes chemistry, Sesquiterpenes metabolism, Streptomyces coelicolor enzymology, Synthetic Biology methods
- Abstract
Sesquiterpene synthases catalyze the conversion of farnesyl diphosphate to more than 300 different hydrocarbon and alcohol natural products which often contain multiple fused rings and stereocenters. Recent work has taken advantage of the exquisite stereospecificity of these enzymes to synthesize complex novel sesquiterpenoids using nonnatural substrates. In this chapter, we describe the expression, purification, and use of one such synthase to convert a nonnatural substrate to a novel cyclic ether, thereby expanding the terpenome., (© 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
36. Garlic for the prevention of cardiovascular morbidity and mortality in hypertensive patients.
- Author
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Stabler SN, Tejani AM, Huynh F, and Fowkes C
- Subjects
- Cardiovascular Diseases prevention & control, Drug Combinations, Humans, Hydrochlorothiazide therapeutic use, Hypertension mortality, Randomized Controlled Trials as Topic, Supine Position, Triamterene therapeutic use, Antihypertensive Agents therapeutic use, Blood Pressure drug effects, Garlic chemistry, Hypertension drug therapy, Phytotherapy methods
- Abstract
Background: Garlic is widely used by patients for its blood pressure lowering effects. A meta-analysis published in 2008 concluded that garlic consumption lowers blood pressure in hypertensive and normotensive patients. Therefore, it is important to review the currently available evidence to determine whether garlic may also have a beneficial role in the reduction of cardiovascular events and mortality rates in patients with hypertension., Objectives: To determine whether the use of garlic as monotherapy, in hypertensive patients, lowers the risk of cardiovascular morbidity and mortality compared to placebo., Search Methods: A systematic search for trials was conducted in the Cochrane Hypertension Group Specialised Register, CENTRAL, MEDLINE, EMBASE, AGRICOLA, AMED, and CINAHL up to November 2011. A hand search of reference lists of identified reviews was conducted. Experts in the area were also contacted to identify trials not found in the electronic search. Clinicaltrials.gov was searched for ongoing trials., Selection Criteria: Randomized, placebo-controlled trials of any garlic preparation versus placebo for the treatment of hypertension were included., Data Collection and Analysis: Two reviewers independently extracted data and assessed trial quality using the risk of bias tool. Data synthesis and analysis was performed using RevMan 5., Main Results: The search identified two randomized controlled trials for inclusion. One trial included 47 hypertensive patients and showed that garlic significantly reduces mean supine systolic blood pressure by 12 mmHg (95% CI 0.56 to 23.44 mmHg, p=0.04) and mean supine diastolic blood pressure by 9 mmHg (95% CI 2.49 to 15.51 mmHg, p=0.007) versus placebo. The authors state that garlic was "free from side effects" and that no serious side effects were reported. There were 3 cases "where a slight smell of garlic was noted."The second trial could not be meta-analysed as they did not report the number of people randomized to each treatment group. They did report that 200 mg of garlic powder given three times daily, in addition to hydrochlorothiazide-triamterene baseline therapy, produced a mean reduction of systolic blood pressure by 10-11 mmHg and of diastolic blood pressure by 6-8 mmHg versus placebo.Neither trial reported clinical outcomes and insufficient data was provided on adverse events., Authors' Conclusions: There is insufficient evidence to determine if garlic provides a therapeutic advantage versus placebo in terms of reducing the risk of mortality and cardiovascular morbidity in patients diagnosed with hypertension. There is also insufficient evidence to determine the difference in withdrawals due to adverse events between patients treated with garlic or placebo.Based on 2 trials in 87 hypertensive patients, it appears that garlic reduces mean supine systolic and diastolic blood pressure by approximately 10-12 mmHg and 6-9 mmHg, respectively, over and above the effect of placebo but the confidence intervals for these effect estimates are not precise and this difference in blood pressure reduction falls within the known variability in blood pressure measurements. This makes it difficult to determine the true impact of garlic on lowering blood pressure.
- Published
- 2012
- Full Text
- View/download PDF
37. Rescue of Mtp siRNA-induced hepatic steatosis by DGAT2 siRNA silencing.
- Author
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Tep S, Mihaila R, Freeman A, Pickering V, Huynh F, Tadin-Strapps M, Stracks A, Hubbard B, Caldwell J, Flanagan WM, Kuklin NA, and Ason B
- Subjects
- Animals, Apolipoproteins B deficiency, Apolipoproteins B genetics, Cholesterol blood, Fatty Liver blood, Fatty Liver enzymology, Fatty Liver metabolism, Liver metabolism, Male, Mice, Triglycerides metabolism, Carrier Proteins genetics, Carrier Proteins metabolism, Diacylglycerol O-Acyltransferase deficiency, Diacylglycerol O-Acyltransferase genetics, Fatty Liver genetics, Gene Silencing, RNA, Small Interfering genetics
- Abstract
Microsomal triglyceride transfer protein (Mtp) inhibitors represent a novel therapeutic approach to lower circulating LDL cholesterol, although therapeutic development has been hindered by the observed increase in hepatic triglycerides and liver steatosis following treatment. Here, we used small interfering RNAs (siRNA) targeting Mtp to achieve target-specific silencing to study this phenomenon and to determine to what extent liver steatosis is induced by changes in Mtp expression. We observed that Mtp silencing led to a decrease in many genes involved in hepatic triglyceride synthesis. Given the role of diacylglycerol O-acyltransferase 2 (Dgat2) in regulating hepatic triglyceride synthesis, we then evaluated whether target-specific silencing of both Dgat2 and Mtp were sufficient to attenuate Mtp silencing-induced liver steatosis. We showed that the simultaneous inhibition of Dgat2 and Mtp led to a decrease in plasma cholesterol and a reduction in the accumulation of hepatic triglycerides caused by the inhibition of Mtp. Collectively, these findings provide a proof-of-principle for a triglyceride synthesis/Mtp inhibitor combination and represent a potentially novel approach for therapeutic development in which targeting multiple pathways can achieve the desired response.
- Published
- 2012
- Full Text
- View/download PDF
38. Don't sit on chronic inflammation.
- Author
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White TJ, Cronin A, Lo MF, Huynh F, Donahoe SR, Lynch AC, and Heriot AG
- Subjects
- Aged, Carcinoma, Squamous Cell etiology, Chronic Disease, Humans, Male, Soft Tissue Neoplasms etiology, Carcinoma, Squamous Cell diagnosis, Inflammation complications, Pilonidal Sinus complications, Soft Tissue Neoplasms diagnosis
- Published
- 2012
- Full Text
- View/download PDF
39. A critical review: does thiopental continuous infusion warrant therapeutic drug monitoring in the critical care population?
- Author
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Huynh F, Mabasa VH, and Ensom MH
- Subjects
- Age Factors, Clinical Trials as Topic, Coma chemically induced, Decision Support Techniques, Drug Monitoring methods, Electroencephalography, GABA Modulators administration & dosage, Humans, Infusions, Intravenous, Intracranial Pressure drug effects, Thiopental adverse effects, Brain Injuries drug therapy, Critical Care methods, GABA Modulators pharmacokinetics, GABA Modulators therapeutic use, Thiopental pharmacokinetics, Thiopental therapeutic use
- Abstract
Thiopental is a barbiturate used in traumatic brain injuries (TBIs) to reduce intracranial pressure (ICP) and to manage cerebral ischemia. As thiopental follows Michaelis-Menten kinetics, therapeutic drug monitoring (TDM) has been used in practice to improve efficacy and reduce adverse effects. However, its role is still debatable, and TDM is not widely practiced. Current evidence suggests that thiopental therapy may improve mortality and functional outcome in a subpopulation of patients with severe TBI with elevated ICP refractory to conventional medical therapy. Several analytical methods are available to quantify thiopental concentrations. This review uses a previously published 9-step decision-making algorithm to determine whether TDM of thiopental in TBI is warranted. There seems to be poor correlation between thiopental concentration and pharmacological response in terms of neurological response, ICP, electroencephalography, and drug toxicity. There is no established therapeutic range for thiopental continuous infusion due to a wide range of plasma concentrations corresponding to efficacy (25-50 mg/L) and toxicity (30-70 mg/L) and the resulting overlap between the 2. Thiopental exhibits intrapatient and interpatient variability due to age, obesity, renal and hepatic dysfunction, Michaelis-Menten kinetics, and hepatic enzyme autoinduction. Available evidence suggests that TDM of thiopental continuous infusion is not beneficial in improving efficacy or avoiding toxicity. There are however 2 possible scenarios in which TDM may provide additional information to sound clinical judgment. The first is providing patient-specific plasma target concentration to guide titration of therapy. The second scenario is differentiating between brain death and barbiturate-induced coma.
- Published
- 2009
- Full Text
- View/download PDF
40. The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode.
- Author
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Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, and Sivaraman J
- Subjects
- Amino Acid Sequence, Glucosyltransferases metabolism, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Conformation, Sequence Homology, Amino Acid, Clostridium enzymology, Glucosyltransferases chemistry
- Abstract
Sucrose phosphate synthase (SPS) catalyzes the transfer of a glycosyl group from an activated donor sugar, such as uridine diphosphate glucose (UDP-Glc), to a saccharide acceptor D-fructose 6-phosphate (F6P), resulting in the formation of UDP and D-sucrose-6'-phosphate (S6P). This is a central regulatory process in the production of sucrose in plants, cyanobacteria, and proteobacteria. Here, we report the crystal structure of SPS from the nonphotosynthetic bacterium Halothermothrix orenii and its complexes with the substrate F6P and the product S6P. SPS has two distinct Rossmann-fold domains with a large substrate binding cleft at the interdomain interface. Structures of two complexes show that both the substrate F6P and the product S6P bind to the A-domain of SPS. Based on comparative analysis of the SPS structure with other related enzymes, the donor substrate, nucleotide diphosphate glucose, binds to the B-domain of SPS. Furthermore, we propose a mechanism of catalysis by H. orenii SPS. Our findings indicate that SPS from H. orenii may represent a valid model for the catalytic domain of plant SPSs and thus may provide useful insight into the reaction mechanism of the plant enzyme.
- Published
- 2008
- Full Text
- View/download PDF
41. The pancreatic beta cell is a key site for mediating the effects of leptin on glucose homeostasis.
- Author
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Covey SD, Wideman RD, McDonald C, Unniappan S, Huynh F, Asadi A, Speck M, Webber T, Chua SC, and Kieffer TJ
- Subjects
- Animals, Eating, Female, Glucose pharmacology, Insulin metabolism, Insulin Secretion, Male, Mice, Mice, Inbred C57BL, Mice, Obese, Receptors, Cell Surface genetics, Receptors, Cell Surface metabolism, Receptors, Leptin, Sensitivity and Specificity, Signal Transduction physiology, Time Factors, Glucose metabolism, Homeostasis, Insulin-Secreting Cells metabolism, Leptin metabolism
- Abstract
The hormone leptin plays a crucial role in maintenance of body weight and glucose homeostasis. This occurs through central and peripheral pathways, including regulation of insulin secretion by pancreatic beta cells. To study this further in mice, we disrupted the signaling domain of the leptin receptor gene in beta cells and hypothalamus. These mice develop obesity, fasting hyperinsulinemia, impaired glucose-stimulated insulin release, and glucose intolerance, similar to leptin receptor null mice. However, whereas complete loss of leptin function causes increased food intake, this tissue-specific attenuation of leptin signaling does not alter food intake or satiety responses to leptin. Moreover, unlike other obese models, these mice have reduced fasting blood glucose. These results indicate that leptin regulation of glucose homeostasis extends beyond insulin sensitivity to influence beta cell function, independent of pathways controlling food intake. These data suggest that defects in this adipoinsular axis could contribute to diabetes associated with obesity.
- Published
- 2006
- Full Text
- View/download PDF
42. Expression, purification and preliminary crystallographic analysis of sucrose phosphate synthase (SPS) from Halothermothrix orenii.
- Author
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Huynh F, Tan TC, Swaminathan K, and Patel BK
- Subjects
- Crystallization, Glucosyltransferases genetics, Glucosyltransferases isolation & purification, Recombinant Proteins chemistry, Recombinant Proteins isolation & purification, Restriction Mapping, X-Ray Diffraction, Bacteria enzymology, Glucosyltransferases chemistry
- Abstract
This is the first report of the crystallization of a sucrose phosphate synthase (SPS; EC 2.4.1.14). It also constitutes the first study of a sucrose phosphate synthase from a non-photosynthetic thermohalophilic anaerobic bacterium, Halothermothrix orenii. The purified recombinant spsA protein has been crystallized in the monoclinic space group C2, with unit-cell parameters a = 154.2, b = 47.9, c = 72.3 A, beta = 103.16 degrees, using the hanging-drop vapour-diffusion method. The crystal diffracts X-rays to a resolution limit of 3.01 A. Heavy-metal and halide-soaking trials are currently in progress to solve the structure.
- Published
- 2005
- Full Text
- View/download PDF
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