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The availability of different single nucleotide polymorphism (SNP) chips and the development of imputation algorithms allow for multistage dairy cattle breeding schemes applying various genomic selection strategies. These SNP genotypes yield genomically estimated breeding values (GEBV) with different accuracies at different costs. Thus, the optimum allocation of investments to different selection paths and strategies to maximize the genetic gain per year (ΔG a ) and its sensitivity to changes in cost and accuracies of GEBV is of great interest. This is even more relevant under the constraints of limited financial resources. With deterministic methods, optimum multistage breeding plans maximizing ΔG a were identified in which selection could take place on GEBV derived from high-density (GEBV HD ) and low-density (GEBV LD ) SNP genotypes. To account for the uncertainty of cost and accuracies of GEBV, these parameters were varied in a semi-continuous manner. Overall breeding costs were limited to the crucial expenses of a traditional breeding program with 50 progeny-tested young bulls per year. Results clearly show that, in an optimal selection strategy, selection on GEBV LD is predominantly used for the identification of future bull dams but the main part of ΔG a is still generated from selection of sires. The low selection intensity in the path dam to sire induced a higher sensitivity of ΔG a to changes in cost and accuracies of GEBV LD compared with the same changes of GEBV HD . On the contrary, the genetic gain generated from selection of males was only affected by changes in accuracies of GEBV HD but almost unaffected by any changes in cost. Thus, changes in cost and accuracies of GEBV LD put the most pressure on the breeding scheme structure to maintain a high ΔG a . Furthermore, genomic selection of bull dams produced by far the majority of breeding cost but the lowest genetic gain.

The development of different muscles and adipose tissues during growth was investigated in commercial Japanese Black (JB) cattle and compared with breeds of the largest variation to be found in Europe. Animals, reared under typical conditions for Japanese and European beef production systems, gained similar body weights but different carcass composition at 24months of age. The carcass of JB contained more adipose tissue and the least proportion of muscle. The longissimus muscle of JB developed extraordinary amounts of 23.3% intramuscular fat (IMF) at 24months of age, compared from 0.6% to 4.7% in European breeds. The relationships between IMF content in the longissimus muscle and different adipose tissue weights indicate that a large amount of "waste fat" is accreted with every percent of IMF. However in JB, the good ability of IMF deposition is associated with relatively least development of "waste fat", as a result of unique breed characteristics combined with special feeding system.

The objective of this study was to investigate the changes in muscle fiber bundles of cattle of different breeds during growth. Different numbers of muscle fibers are surrounded by connective tissue to form bundles macroscopically visible as meat fibers or meat grain, a common meat quality trait. To determine the influence of breed and age on morphological characteristics of muscle fiber bundles, 4 cattle breeds with different growth impetus and muscularity were reared and slaughtered under experimental conditions. German Angus, a typical beef cattle; Galloway, a smaller beef type; Holstein Friesian, a dairy type; and double-muscled Belgian Blue, an extreme type for muscle growth, were used. Between 5 and 15 bulls of each breed were slaughtered at 2, 4, 6, 12, or 24 mo of age, and slices of semitendinosus muscle were removed. Muscle structure characteristics were determined by computerized image analysis. During growth, the muscle cross-sectional area enlarged (P or = 0.15) in bulls of German Angus and Galloway in all age groups and was doubled (P 0.05) during growth. This supports the existing view that the structure of the muscle is already fixed in prenatal life. The double-muscled Belgian Blue bulls showed a more than 2.5-fold greater (P < 0.001) number of muscle fibers per primary bundle compared with the other breeds investigated. The larger muscle fiber bundles led to a smaller amount of connective tissue per muscle area in double-muscled cattle. The coarser grain of meat in double-muscled Belgian Blue bulls and in older animals was not related to greater shear force values.

The objective of this study was to investigate the growth- and breed-related changes of marbling characteristics in cattle. Four cattle breeds with different growth impetus and muscularity were reared and slaughtered under experimental conditions. German Angus, as a typical beef cattle; Galloway, as a smaller, environmentally resistant beef cattle; Holstein-Friesian, as a dairy-type cattle; and double-muscled Belgian Blue, as an extreme type for muscle growth, were used. These 4 breeds were expected to have differences in muscle development and i.m. fat deposition. Between 5 and 15 bulls of each breed were slaughtered at 2, 4, 6, 12, or 24 mo of age. Marbling characteristics were determined and classified in LM and semitendinosus muscle by computerized image analysis. Among breeds, differences appeared in the quantity, structure, and distribution of the marbling flecks in both muscles. The deposition of fat in the double-muscled Belgian Blue bulls remained substantially inferior to that of the other breeds, up to the age of 24 mo. Marbling in German Angus bulls particularly showed larger (P < 0.05) marbling fleck areas. Galloway cattle had the greatest (P < 0.05) number and the most regular (P < 0.05) distribution of the marbling flecks in young animals. Furthermore, for marbling characteristics in Holstein-Friesian animals, a great number and slightly finer structure were observed compared with the other breeds investigated. Postnatal growth-related changes of marbling in LM were characterized by as much as a 40-fold increase in the number of marbling flecks from 2 to 24 mo of age but also by up to a 4-fold enlargement in the area of the marbling flecks. The structure of marbling flecks was determined by 2 development trends. On the one hand, the marbling flecks became larger (P < 0.05), and the structure became coarser, which was reflected by an increasing (P < 0.01) proportion of long marbling flecks as well as an increasing (P < 0.01) maximum skeleton line length. On the other hand, continually new small, round marbling flecks appeared. This caused a decrease (P < 0.01) in the proportion of the 3 largest marbling fleck areas. The distribution of the marbling flecks became more regular (P < 0.05) with increasing proportion and number of marbling flecks. The results suggest that hyperplasia of adipocytes plays an important role in marbling during growth of muscle in cattle.

Sixty longissimus (L) muscle chops were selected according to marbling score in order to develop a technique for the quantitative description of marbling fat by means of computer image analysis (CIA) and study its relationship with intramuscular fat content and shear force variation in pork. L muscle samples were taken from gilts belonging to three genetic lines differing in carcass leanness, namely Large White (LW), Meishan-derived dam line (M) and Synthetic Genex 3000 (SG). SG gilts had leaner loins (P

In Charolais (CH) as beef and German Holstein (H) as dairy cattle, differences in concentrations of hormones regulating partitioning of nutrients, are expected. Charolais (n=13) and Holstein (n=12) bulls 9 months of age were fed every 4 h. Blood samples were taken every 20 min over 6 h. The average plasma concentration of growth hormone (GH) did not differ, but differences in pulse frequency (CH 4.7 pulses/6 h, S.D. 0.9; H 3.5 pulses/6 h, S.D. 1.2, P=0.011) and amplitude were observed (CH 6.3 ng/ml, S.D. 2.8; H 10.1 ng/ml, S.D. 4.7, P=0.026). Plasma concentrations of insulin, glucagon, and leptin also differed (insulin: CH 18.7 μU/ml, S.E. 1.7; H 28.1 μU/ml, S.E. 1.7, P

Ruminants transform feed components preferentially in body mass or milk. The accretion type of cattle are apt in accreting feed as meat and fat, while the secretion type of cattle secrete metabolised feed as milk. The objective of this study was to investigate the growth- and type-related differences in muscle fibers, adipocytes, and hormones in two metabolic types of cattle. Biopsy samples of semitendinosus muscle and blood were taken at 6, 8, 10, 13, and 16 months of age from 13 bulls of each metabolic type (Charolais—CH, German Holstein—H). Postnatal growth was characterized by a nearly 2-fold increase in muscle fiber area, while a constant fiber type frequency was observed. Differences in the growth potential between CH and H bulls were not only found in a higher daily weight gain or higher weight for CH cattle, but were also caused by stronger muscle fiber growth in that cattle type. The higher muscle growth potential of CH was accompanied by lower fat accretion and metabolically linked with lower plasma concentrations of insulin, glucagon, and leptin. The amount of subcutaneous adipose tissue was directly correlated with leptin in CH and with insulin and glucagon in H bulls.

Body weight and fat mass vary distinctly between German Holstein (dairy cattle) and Charolais (beef cattle). The aim of this study was to determine whether the expression of the obese (Ob) gene and lipoprotein lipase (LPL) gene in fat tissues and expression of the long isoform leptin receptor (Ob-Rb) gene in the hypothalamus were different between these two cattle breeds. Body weight and the area of longissimus muscle cross-section of German Holstein were lower (P

Here, we introduce the idea of probabilities of line origins for alleles in general pedigrees as found in crosses between outbred lines. We also present software for calculating these probabilities. The proposed algorithm is based on the linear regression method of Haley, Knott and Elsen (1994) combined with the Markov chain Monte Carlo (MCMC) method for estimating quantitative trait locus coefficients used as regressors. We compared the relative precision of our method and the original method as proposed by Haley et al. (1994). The scenarios studied varied in the allelic distribution of marker alleles in parental lines and in the frequency of missing marker genotypes. We found that the MCMC method achieves a higher accuracy in all scenarios considered. The benefits of using MCMC approximation are substantial if the frequency of missing marker data is high or the number of marker alleles is low and the allelic frequency distribution is similar in both parental lines.

Plasma leptin concentrations and beef cattle carcass characteristics in eight Continental Crossbred steers [0% Wagyu Cattle (WC)] were compared to crossbred cattle with 50 and 75% WC (eight steers each) genetic makeup to determine if a relationship exists between plasma leptin concentrations and intramuscular fat content (marbling) in beef cattle. Plasma leptin concentrations were measured at two stages of cattle growth, 16 and 4 wk prior to slaughter (W P S). Beef cattle characteristics including marbling score, ribeye area, i.m. total lipid content, and backfat depth were determined, and correlation coefficients obtained between these traits and leptin concentration at both sampling dates. Plasma leptin concentrations increased relative to the lipid content in the 24 steers based on the significant positive correlation observed between plasma leptin and total lipids (% wet weight) from both pars costalis diaphragmatis (p.c.d.)(16 WPS: r = 0.69, P = 0.0004; 4 WPS: r = 0.35, P = 0.104) and longissimus (16 WPS: r = 0.59, P = 0.002; 4 WPS: r = 0.51, P = 0.011) muscles. A trend was observed, however, at 4 WPS when the groups of varying Wagyu genetics were compared. Plasma leptin was positively correlated with muscle lipid content for the 0% Wagyu cattle (longissimus: r = 0.62, P = 0.103; p.c.d.:r = 0.40, P = 0.410)but there was almost no correlation in these parameters for the 50% WC (longissimus: r = 0.11, P = 0.797; p.c.d.: r = 0.005, P = 0.990). Plasma leptin concentration was negatively correlated with lipid content in the 75% WC (longissimus: r = –0.60, P = 0.120; p.c.d.: r = –0.65, P = 0.164). The results suggest that increasing Wagyu genetics negates any relationship between leptin concentrations and i.m. fat content in cattle. Key words: Wagyu crossbred cattle, meat quality, intramuscular fat, marbling, leptin

We assessed an Echinococcus granulosus hydatid fluid antigen-ELISA (EgHF-ELISA) as a serologic prescreening test for E. granulosus infections, supplemented by more specific confirmatory tests, including arc-5 immunoprecipitation and antigen B subunit 8-kD immunoblotting. The diagnostic sensitivity of the EgHF-ELISA was 91%. With regard to the test specificity of the EgHF-ELISA (overall = 82%), we observed relatively frequent cross-reactions in tumor patients (6%) and in patients with other parasitic diseases. Cestode-related cross-reactivity can be resolved by the complementary use of E. multilocularis-specific antigens or Taenia solium cysticercosis-specific immunoblotting. Immunoblotting based upon the detection of antibody reactivity to the 8-kD antigen of EgHF, or if appropriately detectable, to the 29-kD and 34-kD bands exhibited a 91% diagnostic sensitivity and an overall specificity of 97% or 94%, respectively. Thus, immunoblotting provided a 99% discrimination between seropositive pre-operative cystic hydatid disease cases and cross-reactive non-cestode parasitic infections or malignancies.

In order to control linkage experiments, exact formulas and approximations are derived for the minimum distance between quantitative trait loci and the nearest marker locus. The locations of the loci are assumed to be uniformly distributed over the genome. The locations of the marker loci may be known or unknown. The number and length of the chromosomes are arbitrary and therefore the results are applicable for all kinds of species. Analogous formulas are derived for the maximum distance between the quantitative trait loci and the nearest marker loci. For the probability of linkage more simple expressions are derived. The accuracy of the approximations is checked by a simulation.

Summary The aim of the project was the identification of quantitative trait loci (QTL) for body weight and body fat content. Using selected (Du6, Du6P) and randomly mated (DuKs) mouse lines with differences in body weight and abdominal fat content up to 100%, the study was carried out in three steps: (1) Line specific alleles were detected for DNA fingerprint banding patterns and equally spaced microsatellite markers. (2) Linkage analysis was performed in informative families generated by crosses between the lines to prove if the line specific allele distribution at single loci is the result of the selection process. The Maximum Likelihood test statistic (MLS) provided evidence for a QTL effecting growth on chromosome 11 (MLS = 7.6). A QTL responsible for abdominal fat content may be suggested on chromosome 3 (MLS = 2.7). (3) Expression analysis of the putative candidate genes Gh and Ap2 in the chromosomal regions with effect on the trait differentiation revealed no differences between the lines. Differences in the tissue specific gene expression levels between the lines were detected for the Gpd and the Igfl-genes. Zusammenfassung Nachweis von QTL fur Korpermasse und Fettansatz in Mausen unter Verwendung von genetischen Markern Mit den Untersuchungen wurde das Ziel verfolgt, quantitative Merkmalsorte (QTL) fur den Merkmalskomplex Korpergewicht und Fettansatz zu identifizieren. Unter Verwendung von selektierten (Du6, Du6P) und zufallsgepaarten (DuKs) Mauslinien, die sich in der Korpermasse und im Fettansatz bis zu 100% unterschieden, wurde die Studie in drei Schritten durchgefuhrt: (1) Mittels DNA Fingerprinting und Microsatellitenmarkern wurden im gesamten Genom Loci mit linientypischer Allelverteilung identifiziert. (2) In Kopplungsanalysen innerhalb informativer Familien aus Kreuzungen zwischen den Linien wurde getestet, ob die linientypischen Allele auf die Selektion zuruckzufuhren sind. Auf dem Chromosom 11 wurde ein QTL fur Korpermasse (MLS = 7.6) und auf dem Chromosom 3 mit hoher Wahrscheinlichkeit ein QTL fur Fettansatz (MLS = 2.7) identifiziert. (3) Die Analyse des Gh- und Ap2 Genes als putative Kandidatengene in den identifizierten Chromosomenregionen mit Effekt auf die Merkmalsauspragung zeigte keine Unterschiede. Gewebespezifische Unterschiede in der Genexpression wurden zwischen den Linien im Gpd- und Igf1-Gen nachgewiesen.

2,6-Diaminopimelic acid (DAPA), ribonucleic acid (RNA), 15N, D-alanine (D-ALA) and the amino acid profiles (AAP) were compared as microbial markers for determination of the microbial protein synthesis in the rumen. Three dairy cows (Schwarzbuntes Milchrind, LW 602 kg), each fitted with a rumen cannula and a re-entrant cannula in the proximal duodenum, were offered four isoenergetic and isonitrogenous diets (mean daily intake 15.0 +/- 0.45 kg DM; forage: concentrate = 50:50) in a periodic experiment. The diets contained soyabean extracted meal, meat and bone meal, pea meal and dried clover as major sources of protein. On the 4th day after administration of 9 g 15N-labelled urea (95 atom-% 15N-excess) per day, samples of rumen fluid and duodenal digesta were obtained 3 h after feeding. The bacteria were isolated by differential centrifugation. Bacteria harvested from the rumen had significantly higher 15N enrichment and D-ALA: N ratio than 'duodenal' bacteria. However, DAPA: N ratio was higher in 'duodenal' bacteria compared to rumen bacteria. There were no differences in RNA: N ratio between rumen and 'duodenal' bacteria. The source of the bacteria in the digestive tract has an influence on the ratio of microbial N: total N, especially when 15N, AAP, DAPA and D-ALA but not RNA were used as markers. The most reproducible method was D-ALA (C.V. 4.7 for rumen and 6.8 for 'duodenal' bacteria) followed by 15N (10.8 resp. 4.8) and RNA (9.7 resp. 8.2). The results obtained with 15N and D-ALA agreed closely at the same source of bacteria. The RNA method reached the level of these markers (15N, D-ALA) when the bacteria were isolated from the duodenum. It is concluded that D-ALA (bacteria isolated from rumen and duodenum) and also 15N (bacteria isolated from duodenum) were the best markers for estimation of the microbial protein synthesis.

The sharp upper bound of the kurtosis γ2 is derived for unimodal standardized distributions with skewness γ1 and support [a, b].

For some purposes, identity-by-descent (IBD) probabilities for entire chromosome segments are required. Making use of pedigree information, length of the segment and the assumption of no crossing-over, a generalization of a previously published graph theory oriented algorithm accounting for nonzero IBD of common ancestors is given, which can be viewed as method of path coefficients for entire chromosome segments. Furthermore, rules for setting up a gametic version of a segmental IBD matrix are presented. Results from the generalized graph theory oriented method, the gametic segmental IBD matrix and the segmental IBD matrix for individuals are identical.

Generalising the ANOVA method of estimating variance components in mixed linear models a simple procedure is presented to estimate skewness and kurtosis of the distributions of the random effects of the model. For the model II of a one-way classification this procedure is demonstrated explicitly.

Reduction in the variability of piglet birth weight within litter and increased piglet survival are key objective in schemes aiming to improve sow prolificacy. In previous studies, variation in birth weight was described by the sample standard deviation of birth weights within one litter, and the genetic impact has been proved. In this study, we additionally considered the sex effect on piglet's birth weight and on its variability. The sample variance of birth weights per litter separated by sex was assigned as a trait of the sow. Different transformations of the trait were fitted by linear and generalized linear mixed models. Based on 1111 litters from Landrace sows, the estimates of heritability for the different measures ranged from 11 to 12%. We analysed the influence of including birth weight of stillborn piglets on the variability of birth weight within litter. With omitted stillborns, the heritability was estimated approximately 2% higher than that in investigations of all born piglets, and the impact of sex on birth weight variability was increased. Because the proportion of intrapartum deaths is rather high, it is recommended to consider the total number of piglets born per litter when analysing birth weight variation.

The reconstruction of photons in the ATLAS detector is studied with data taken during the 2004 Combined Test Beam, where a full slice of the ATLAS detector was exposed to beams of particles of known energy at the CERN SPS. The results presented show significant differences in the longitudinal development of the electromagnetic shower between converted and unconverted photons as well as in the total measured energy. The potential to use the reconstructed converted photons as a means to precisely map the material of the tracker in front of the electromagnetic calorimeter is also considered. All results obtained are compared with a detailed Monte-Carlo simulation of the test-beam setup which is based on the same simulation and reconstruction tools as those used for the ATLAS detector itself.

A new method for calibrating the hadron response of a segmented calorimeter is developed and successfully applied to beam test data. It is based on a principal component analysis of energy deposits in the calorimeter layers, exploiting longitudinal shower development information to improve the measured energy resolution. Corrections for invisible hadronic energy and energy lost in dead material in front of and between the calorimeters of the ATLAS experiment were calculated with simulated Geant4 Monte Carlo events and used to reconstruct the energy of pions impinging on the calorimeters during the 2004 Barrel Combined Beam Test at the CERN H8 area. For pion beams with energies between 20GeV and 180GeV, the particle energy is reconstructed within 3% and the energy resolution is improved by between 11% and 25% compared to the resolution at the electromagnetic scale. © 2011 CERN for the benefit of the ATLAS collaboration, published under license by IOP Publishing Ltd and SISSA.

In 2004 at the ATLAS (A Toroidal LHC ApparatuS) combined test beam, one slice of the ATLAS barrel detector (including an Inner Detector set-up and the Liquid Argon calorimeter) was exposed to particles from the H8 SPS beam line at CERN. It was the first occasion to test the combined electron performance of ATLAS. This paper presents results obtained for the momentum measurement p with the Inner Detector and for the performance of the electron measurement with the LAr calorimeter (energy E linearity and resolution) in the presence of a magnetic field in the Inner Detector for momenta ranging from 20 GeV/c to 100 GeV/c. Furthermore the particle identification capabilities of the Transition Radiation Tracker, Bremsstrahlungs-recovery algorithms relying on the LAr calorimeter and results obtained for the E/p ratio and a way how to extract scale parameters will be discussed. © 2010 IOP Publishing Ltd and SISSA.

The objective of this study was to investigate the changes in muscle fiber bundles of cattle of different breeds during growth. Different numbers of muscle fibers are surrounded by connective tissue to form bundles macroscopically visible as meat fibers or meat grain, a common meat quality trait. To determine the influence of breed and age on morphological characteristics of muscle fiber bundles, 4 cattle breeds with different growth impetus and muscularity were reared and slaughtered under experimental conditions. German Angus, a typical beef cattle; Galloway, a smaller beef type; Holstein Friesian, a dairy type; and double-muscled Belgian Blue, an extreme type for muscle growth, were used. Between 5 and 15 bulls of each breed were slaughtered at 2, 4, 6, 12, or 24 mo of age, and slices of semitendinosus muscle were removed. Muscle structure characteristics were determined by computerized image analysis. During growth, the muscle cross-sectional area enlarged (P0.001) about 5-fold in double-muscled Belgian Blue bulls and about 4-fold in the other breeds. This was a result of the enlargement (P0.001) of primary bundles and muscle fibers. The bundle size was similar (Por = 0.15) in bulls of German Angus and Galloway in all age groups and was doubled (P0.001) in double-muscled Belgian Blue animals from 4 mo of age on. The Holstein Friesian bulls had the smallest (P0.001) muscle fiber bundles at 24 mo of age. The number of muscle fibers per bundle and the number of bundles per muscle remained nearly constant (P0.05) during growth. This supports the existing view that the structure of the muscle is already fixed in prenatal life. The double-muscled Belgian Blue bulls showed a more than 2.5-fold greater (P0.001) number of muscle fibers per primary bundle compared with the other breeds investigated. The larger muscle fiber bundles led to a smaller amount of connective tissue per muscle area in double-muscled cattle. The coarser grain of meat in double-muscled Belgian Blue bulls and in older animals was not related to greater shear force values.

The objective of this study was to investigate the growth- and breed-related changes of marbling characteristics in cattle. Four cattle breeds with different growth impetus and muscularity were reared and slaughtered under experimental conditions. German Angus, as a typical beef cattle; Galloway, as a smaller, environmentally resistant beef cattle; Holstein-Friesian, as a dairy-type cattle; and double-muscled Belgian Blue, as an extreme type for muscle growth, were used. These 4 breeds were expected to have differences in muscle development and i.m. fat deposition. Between 5 and 15 bulls of each breed were slaughtered at 2, 4, 6, 12, or 24 mo of age. Marbling characteristics were determined and classified in LM and semitendinosus muscle by computerized image analysis. Among breeds, differences appeared in the quantity, structure, and distribution of the marbling flecks in both muscles. The deposition of fat in the double-muscled Belgian Blue bulls remained substantially inferior to that of the other breeds, up to the age of 24 mo. Marbling in German Angus bulls particularly showed larger (P0.05) marbling fleck areas. Galloway cattle had the greatest (P0.05) number and the most regular (P0.05) distribution of the marbling flecks in young animals. Furthermore, for marbling characteristics in Holstein-Friesian animals, a great number and slightly finer structure were observed compared with the other breeds investigated. Postnatal growth-related changes of marbling in LM were characterized by as much as a 40-fold increase in the number of marbling flecks from 2 to 24 mo of age but also by up to a 4-fold enlargement in the area of the marbling flecks. The structure of marbling flecks was determined by 2 development trends. On the one hand, the marbling flecks became larger (P0.05), and the structure became coarser, which was reflected by an increasing (P0.01) proportion of long marbling flecks as well as an increasing (P0.01) maximum skeleton line length. On the other hand, continually new small, round marbling flecks appeared. This caused a decrease (P0.01) in the proportion of the 3 largest marbling fleck areas. The distribution of the marbling flecks became more regular (P0.05) with increasing proportion and number of marbling flecks. The results suggest that hyperplasia of adipocytes plays an important role in marbling during growth of muscle in cattle.

The Tile Calorimeter, which constitutes the central section of the ATLAS hadronic calorimeter, is a non-compensating sampling device made of iron and scintillating tiles. The construction phase of the calorimeter is nearly complete, and most of the effort now is directed toward the final assembly and commissioning in the underground experimental hall. The layout of the calorimeter and the tasks carried out during construction are described, first with a brief reminder of the requirements that drove the calorimeter design. During the last few years a comprehensive test-beam program has been followed in order to establish the calorimeter electromagnetic energy scale, to study its uniformity, and to compare real data to Monte Carlo simulation. The test-beam setup and first results from the data are described. During the test-beam period in 2004, lasting several months, data have been acquired with a complete slice of the central ATLAS calorimeter. The data collected in the test-beam are crucial in order to study algorithms for hadronic energy reconstruction using single particles. The generalization of these algorithms to reconstruct jet energies will be the starting point for numerous physics studies in which jets play a leading role. The results obtained in applying these algorithms to simulated di-jet events are given in the last section of the note. © 2006 IEEE.

The generation of special crosses between different inbred lines such as recombinant inbred strains (RIS) and intermated recombinant inbred populations (IRIP) is being used to improve the power of QTL detection techniques, in particular fine mapping. These approaches acknowledge the fact that recombination of linked loci increases with every generation, caused by the accumulation of crossovers appearing between the loci at each meiosis. This leads to an expansion of the map distance between the loci. While the amount of the map expansion of RIS and IRIP is known for infinite inbred generations, it is not known for finite numbers of generations. This gap was closed here. Since the recursive evaluation of the map expansion factors turned out to be complex, a useful approximation was derived.

The four LEP collaborations, ALEPH, DELPHI, L3 and OPAL, have collected a total of 2461 pb−1 of e+ e− collision data at centre-of-mass energies between189 and 209 GeV. The data are used to search for the Standard Model Higgs boson. The search results of the four collaborations are combined and examined in a likelihood test for their consistency with two hypotheses: the background hypothesis and the signal plus background hypothesis. The corresponding confidences have been computed as functions of the hypothetical Higgs boson mass. A lower bound of114.4 GeV/c2 is established, at the 95% confidence level, on the mass of the Standard Model Higgs boson. The LEP data are also used to set upper bounds on the HZZ coupling for various assumptions concerning the decay of the Higgs boson. © 2016, Elsevier. All rights reserved.

Genetic interference means that the occurrence of one crossover affects the occurrence and/or location of other crossovers in its neighborhood. Of the three components of genetic interference, two are well modeled: the distribution of the number and the locations of chiasmata. For the third component, chromatid interference, there exists only one model. Its application to real data has not yet been published. A further, new model for chromatid interference is presented here. In contrast to the existing model, it is assumed that chromatid interference acts only in the neighborhood of a chiasma. The appropriateness of this model is demonstrated by its application to three sets of recombination data. Both models for chromatid interference increased fit significantly compared to assuming no chromatid interference, at least for parts of the chromosomes. Interference does not necessarily act homogeneously. After extending both models to allow for heterogeneity of chromatid interference, a further improvement in fit was achieved. DURING meiotic prophase 1 in diploid individuals, each chromosome is paired with its homologue. Each homologue is duplicated, producing two identical chromatids, the sister strands. A crossover represents an event where two nonsister chromatids form chiasmata, break, and reunite, enforced by the tight contact and the twisting between the chromatids and the subsequent repair mechanism. After meiosis, one of the four resulting gametes is randomly chosen for further inheritance. For clarity we use the term chiasma at the four-strand stage, while the term crossover is used with single strands or gametes. Hence, from one nonsister strand chiasma, two crossovers result. An example of a meiosis at the four-strand stage is given in Figure 1. It has often been proven that chiasma or crossover events are not independent. The notion of genetic interference describes the effect on crossovers of neighboring crossovers. The components of interference are as follows: Non(complete)randomness in the number of crossovers: The no-interference model applies if the crossover numbers are Poisson distributed. All other count distributions yield deviations from no interference. Non(complete)randomness in crossover locations: The suppression of nearby crossovers has been modeled by nonuniformly distributed locations and by nonexponentially distributed intercrossover distances with renewal point processes. Chromatid interference (CI): The strands actually involved in a crossover depend in some way on those strands involved in neighboring crossovers. Substantial progress has been made in investigating and modeling the first two components. For these cases we use the term suppression interference (SI). For SI models, no chromatid interference (NCI) is assumed. For recent reviews see Karlin and Liberman (1994) and McPeek and Speed (1995). The χ2-model of recombination (Fosset al. 1993; Zhaoet al. 1995a) is accepted as a satisfying model for positive SI. Negative SI, i.e., one chiasma enforcing the occurrence of another one, can be described, for example, by a negative binomial count distribution for the number of chiasmata. The investigation of CI has not reached the same level yet. It started in the 1930s when recombination fractions >0.5 had been observed. This phenomenon was termed pseudolinkage. Models have been developed for data exhibiting pseudolinkage (Winge 1935; Mather 1938). Particularly, Mather found that this phenomenon could result only from CI. However, little evidence was found for it in diploid organisms. For a review and a test procedure, see Zhao et al. (1995b). Recently, Zhao and Speed (1998, 1999) developed a model for CI. To our knowledge, an application has not been published so far. Summarizing the literature, the general view is that CI is not evident. This is reflected by widely distributed mapping software (e.g., CRIMAP) that reduce recombination fractions >0.5 to 0.5. Yet, recombination fractions θ > 0.5 are accepted in tetraploids. Recombination fractions of up to 0.8 have been found in tetraploid fish (Wrightet al. 1983). Since θ ≤ 0.5 is valid even for tetraploid species under NCI [see formula (6) with Q = 0.25], there is evidence for an action of CI. Hence, CI cannot be excluded, either from a theoretical point of view, or from empirical evidence. It therefore appears to be helpful to derive alternative models to the existing model of Zhao and Speed (1998), either to increase the evidence for CI in diploids or to strengthen the conviction that there is none. The objective of the present study was to develop a model allowing parallel nonsister strand chiasmata, which could not arise under high SI if one assumes suppression on all four strands, and sister strand chiasmata, which also have not been modeled so far but could play a role at high SI. In analyzing a number of recombination data sets we found evidence for SI and CI. Until now heterogeneity of interference has not been investigated. We incorporated CI heterogeneity into both CI models and obtained further improvement in fit.

The objective of this study was to investigate the growth- and breed-related changes of muscle fiber characteristics in cattle and their importance to meat quality. Four cattle breeds with different growth impetus and muscularity were reared and slaughtered under experimental conditions. German Angus as a beef type, Galloway as a hardy type, Holstein Friesian as a dairy type, and double-muscled Belgian Blue as an extreme type for muscle growth were used. Between 5 and 17 bulls of each breed were slaughtered at 0, 2, 4, 6, 12, 18, and 24 mo of age. Muscle fiber traits were determined and classified by computerized image analysis, and several measures of meat quality were also determined, including shear force value, meat color, and i.m. fat content. The postnatal growth of semitendinosus muscle in cattle was characterized by a nearly 10-fold increase of muscle fiber area from birth to 24 mo of age. In the first few months after birth, a transformation of type IIA fibers into IIB fibers was found, whereas type I fibers were nearly unaffected by age. The apparent total muscle fiber number of semitendinosus muscle did not increase during postnatal life. These results confirm that the fiber number is determined in embryonic development. Throughout the study, the double-muscled Belgian Blue (BBDM) bulls had almost twice the fiber number of the other breeds, emphasizing a more extensive hyperplasia of muscle fibers during embryonic development in BBDM compared with the other three breeds. The apparent number of type I fibers was, however, not affected by breed, which suggests that the additional fibers found in BBDM postnatally were type IIB and IIA fibers. We did not find significant differences in muscle fiber total number, muscle fiber type frequencies, or meat quality characteristics among breeds, with the exception of BBDM. Having pooled the four breeds, paler meat was related to a higher frequency of type IIB fibers, a lower area of type IIA and type I fiber, and a higher total muscle fiber number. These findings based on data of double muscling give us some hints for biological causes for the variation of meat quality. Further investigation, in particular within each breed, is necessary to identify the superior fiber traits for bovine meat production.

Groups of male rats were exposed to acute doses of oxygen, ozone, or paraquat which produced equivalent mortality (25-30%) over a 28 day post-exposure period. Quantitative evaluation of morphological changes indicated the primary response to be edema and inflammation with only slight fibrosis being apparent by the end of the observation period. Aerobic pulmonary metabolism was inhibited in lungs from animals exposed to oxygen and ozone as evidenced by decreased oxygen consumption; however, this was transient and O2 consumption returned to normal within 24 hours after removal from the exposure chamber. Conversely, treatment with paraquat caused an immediate, transient stimulation of O2 consumption. Glucose metabolism was unaltered by the gas exposures and, as previously reported, was initially stimulated by paraquat treatment. In vitro, only paraquat altered both O2 consumption and glucose metabolism when added to lung slice preparations; ozone had no effect. Oxygen did not alter O2 consumption but caused a slight biphasic response in glucose metabolism. Aerobic metabolism is relatively unchanged by these doses of oxygen and ozone which result in the death of 25-30% of all treated animals. Even though paraquat produces similar morphologic changes, it may represent a more severe metabolic insult than "equivalent" doses of oxygen or ozone. Also, if interstitial pulmonary fibrosis is a desired result of experimental exposure, rats may not be a suitable model for oxidant induced lung injury.

Breed differences in adult animals are determined during fetal development. If interventions are to be developed that influence growth of muscle and fat, it is important to know at which time during gestation breed differences appear and are fixed. The objective of this study was to characterize fetal development in cattle of different breeds. Pregnant cows of 4 cattle breeds with different growth impetus and muscularity were slaughtered under normal processing conditions and the fetuses were removed. German Angus, a typical beef cattle; Galloway, a smaller, environmentally resistant beef type; Holstein Friesian, a dairy type; and Belgian Blue, an extreme type for muscle growth were used. Fetuses of each breed were investigated at 3, 6, and 9 mo of gestation. Fetuses were weighed and dissected into carcass, organs, and muscles. Body fat weight was obtained using the Soxhlet extraction method. Fetal weight increased most rapidly in the third trimester of gestation mainly due to the accelerated muscle and fat deposition. The organ weight to body weight (BW) ratios decreased and the muscle and fat weight to BW ratios increased. At 3 mo of gestation, Galloway fetuses had the significantly smallest BW, half-carcass weight, leg weight, organ weight, muscle weight and shortest leg length. In contrast, Holstein fetuses had the significantly greatest BW, liver, kidney, and lung weights and significantly longest leg length among the 4 breeds, but no differences between Holstein Friesian and Belgian Blue were detected in half-carcass and leg weight. Indeed, Belgian Blue fetuses had the significantly greatest half-carcass weight, leg weight, and muscle weight at 9 mo of gestation, and Galloway had a significantly greater body fat to BW ratio than Holstein Friesian and Belgian Blue. These differences were not evident at 3 and 6 mo of gestation. These data show that the profound increase of tissue and organ weights occurred in later gestation in cattle fetuses even though breed differences were evident as early as 3 mo of gestation. Depending on the tissue of interest, impacting fetal growth likely needs to occur early in gestation before the appearance of breed-specific differences.