30 results on '"European Vegetation Archive (EVA)"'
Search Results
2. Nordic-Baltic Grassland Vegetation Database (NBGVD) – current state and future prospects.
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Skobel, Nadiia, Kozub, Łukasz, Dembicz, Iwona, Boch, Steffen, Bruun, Hans Henrik, Chusova, Olha, Golub, Valentin, Helm, Aveliina, Iakushenko, Dmytro, Pawlikowski, Paweł, Zaniewski, Piotr, and Dengler, Jürgen
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GRASSLAND management ,SPECIES ,STEPPES ,PLANTS ,MACROECOLOGY - Abstract
This Long Database Report describes the historical background and current contents of the Nordic-Baltic Grassland Vegetation Database (NBGVD) (GIVD -code EU-00-002). NBGVD is the EDGG -associated collaborative vegetation-plot database that collects vegetation-plot data of grasslands and other open habitats (except segetal and deep aquatic vegetation) from the Nordic-Baltic region excluding Germany, namely Belarus, Denmark, Estonia, Faroe Islands, Finland, Iceland, Latvia, Lithuania, Norway, N Poland, NW Russia, Svalbard and Jan Mayen, and Sweden. Target vegetation types are lowland grasslands and heathlands, arctic-alpine communities, coastal communities, non-forested mires and other wetlands, rocky, tall-herb and ruderal communities. As of March 2024, it included 12,694 relevés recorded between 1910 and 2023. These were mainly digitised from literature sources (84%), while the remainder comes from individual unpublished sources (16%). The data quality is high, with bryophytes and lichens being treated in more than 80% of all plots and measured environmental variables such as topography and soil characteristics often available in standardised form. A peculiarity of the Nordic-Baltic region are the relatively small plot sizes compared to other regions (median: 4 m
2 ). The available data stem from 35 vegetation classes, with Koelerio-Corynephoretea, Festuco-Brometea, Sedo-Scleranthetea, Molinio-Arrhenatheretea and Scheuchzerio-Caricetea being most frequent. We conclude that NBGVD provides valuable data, allowing interesting analyses at the regional scale and fills gaps in continental to global analyses. Still, since there are many more data around, we ask interested readers to contribute their own data or help find and digitise old data from the literature. Taxonomic reference : TURBOVEG species list "Europe". Syntaxonomic reference : Mucina et al. (2016). Abbreviations : EDGG = Eurasian Dry Grassland Group, EVA = European Vegetation Archive, GIVD = Global Index of Vegetation-Plot Databases, NBGVD = Nordic-Baltic Grassland Vegetation Database [ABSTRACT FROM AUTHOR]- Published
- 2024
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3. EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats
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Chytry, Milan, Tichy, Lubomir, Gavilán García, Rosario Gloria, Chytry, Milan, Tichy, Lubomir, and Gavilán García, Rosario Gloria
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Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location: Europe. Methods: We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic ex, Depto. de Farmacología, Farmacognosia y Botánica, Fac. de Farmacia, TRUE, pub
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- 2024
4. Facebook groups as citizen science tools for plant species monitoring.
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Marcenò, Corrado, Padullés Cubino, Josep, Chytrý, Milan, Genduso, Emanuele, Salemi, Dario, La Rosa, Alfonso, Gristina, Alessandro Silvestre, Agrillo, Emiliano, Bonari, Gianmaria, Giusso del Galdo, Gianpietro, Ilardi, Vincenzo, Landucci, Flavia, and Guarino, Riccardo
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PLANT species , *BOTANY , *CITIZEN science , *SOCIAL networks , *ENDANGERED species , *PLANT invasions , *BIODIVERSITY , *ONLINE social networks - Abstract
Social networks offer communication channels through which people share huge amounts of primary data that can be used for scientific analyses, including biodiversity research. To understand to what extent data extracted from social networks could complement data collected for scientific purposes, it is necessary to quantify the bias of such data.We analysed which plant traits increased the probability of a wild‐growing plant species to be photographed and posted to a social network based on the data from an unstructured citizen science tool; a Facebook group focused on the vascular flora of Sicily (Italy). Then, we compared botanical data collected by this Facebook group members with data collected by scientists in 6,366 vegetation plots sampled across Sicily, stored in the EVA database.Our results suggested that data proceeding from the analysed Facebook group were affected by various sampling biases, which differed from the biases inherent to other types of biodiversity data such as those from vegetation plots.Facebook users recorded a higher proportion of red‐listed and alien species than vegetation scientists. Therefore, social networks can provide a valuable complement to the data collected by scientists for research purposes.Synthesis and applications. Despite Facebook does not support geotagging and interface for data access and analysis, it is an invaluable source of biodiversity data that could complement those collected by professional researchers. The main advantage of data from social networks is their high dynamism, as they report large amounts of species occurrences in almost real time. Therefore, citizen science data from a Facebook group where the records are curated by expert volunteers can be used (a) for monitoring population dynamics of threatened and alien species; (b) as a source of additional data on rare species occurrences, particularly for plants that are attractive for amateur botanists, such as orchids; (c) for early warning systems of potential new invasions; and (4) for phenological studies, especially at the beginning of the flowering season. [ABSTRACT FROM AUTHOR]
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- 2021
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5. Different sets of traits explain abundance and distribution patterns of European plants at different spatial scales.
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Sporbert, Maria, Welk, Erik, Seidler, Gunnar, Jandt, Ute, Aćić, Svetlana, Biurrun, Idoia, Campos, Juan Antonio, Čarni, Andraž, Cerabolini, Bruno E. L., Chytrý, Milan, Ćušterevska, Renata, Dengler, Jürgen, De Sanctis, Michele, Dziuba, Tetiana, Fagúndez, Jaime, Field, Richard, Golub, Valentin, He, Tianhua, Jansen, Florian, and Lenoir, Jonathan
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Aim: Plant functional traits summarize the main variability in plant form and function across taxa and biomes. We assess whether geographic range size, climatic niche size, and local abundance of plants can be predicted by sets of traits (trait syndromes) or are driven by single traits. Location: Eurasia. Methods: Species distribution maps were extracted from the Chorological Database Halle to derive information on the geographic range size and climatic niche size for 456 herbaceous, dwarf shrub and shrub species. We estimated local species abundances based on 740,113 vegetation plots from the European Vegetation Archive, where abundances were available as plant species cover per plot. We compiled a complete species‐by‐trait matrix of 20 plant functional traits from trait databases (TRY, BiolFlor and CLO‐PLA). The relationships of species’ geographic range size, climatic niche size and local abundance with single traits and trait syndromes were tested with multiple linear regression models. Results: Generally, traits were more strongly related to local abundances than to broad‐scale species distribution patterns in geographic and climatic space (range and niche size), but both were better predicted by trait combinations than by single traits. Local abundance increased with leaf area and specific leaf area (SLA). Geographic range size and climatic niche size both increased with SLA. While range size increased with plant height, niche size decreased with leaf carbon content. Conclusion: Functional traits matter for species’ abundance and distribution at both local and broad geographic scale. Local abundances are associated with different combinations of traits as compared to broad‐scale distributions, pointing to filtering by different environmental and ecological factors acting at distinct spatial scales. However, traits related to the leaf economics spectrum were important for species’ abundance and occurrence at both spatial scales. This finding emphasizes the general importance of resource acquisition strategies for the abundance and distribution of herbaceous, dwarf shrub and shrub species.We studied whether single traits or sets of traits matter for species’ abundance and distribution at both local and broad geographic scale. Traits related to the leaf economics spectrum were important for abundance and occurrence at both spatial scales. This finding emphasizes the general importance of resource acquisition strategies for the abundance and distribution of herbaceous, dwarf shrub and shrub species. [ABSTRACT FROM AUTHOR]
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- 2021
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6. EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats.
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Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez‐Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, and Attorre, Fabio
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SPECIES distribution , *ARTIFICIAL habitats , *HABITATS , *EXPERT systems , *PROGRAMMING languages , *NATURE conservation - Abstract
Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation‐plot records to the habitats of the EUNIS system, use it to classify a European vegetation‐plot database, and compile statistically‐derived characteristic species combinations and distribution maps for these habitats. Location: Europe. Methods: We developed the classification expert system EUNIS‐ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set‐theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species‐to‐habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man‐made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNIS‐ESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment. [ABSTRACT FROM AUTHOR]
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- 2020
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7. European Boreal Forest Vegetation Database.
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Jašková, Anni, Braslavskaya, Tatyana Yu., Tikhonova, Elena, Paal, Jaanus, Rusina, Solvita, Laivinš, Maris, Kucherov, Ilya B., Genikova, Nadezhda V., Knollová, Ilona, Chernenkova, Tatiana V., Churakova, Elena Yu., Diekmann, Martin, Halvorsen, Rune, Kirichok, Elena I., Korotkov, Vladimir N., Kryshen, Alexander M., Lugovaya, Daria L., Morozova, Olga V., Potapov, Petr V., and Prokazina, Tatiana S.
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FOREST plants , *TAIGAS , *BOTANY , *DATABASES , *PLANT communities - Abstract
The European Boreal Forest Vegetation Database (EBFVD, GIVD ID: EU-00-027) is a repository for vegetation- plot data from the forests of the boreal and hemiboreal zones of Europe. In this report, we describe its structure, current content and future perspectives opened up by the database. In February 2019, the database contained 13 037 vegetation-plot records from Belarus, Estonia, Finland, Latvia, Norway, Russia and Sweden that are not yet stored in the databases of the European Vegetation Archive (EVA). Consequently, this database significantly improves the availability of forest plant community data from Northern Europe. The database is managed by the Vegetation Science Group, Department of Botany and Zoology, Masaryk University, Brno (Czech Republic), in the TURBOVEG 2 program. It is registered in the Global Index of Vegetation Plot Databases (GIVD) and included in EVA. The whole database, or a subset of it, can be requested via EVA, or directly from the database custodian. [ABSTRACT FROM AUTHOR]
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- 2020
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8. Alpha diversity of vascular plants in European forests.
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Večeřa, Martin, Divíšek, Jan, Lenoir, Jonathan, Jiménez‐Alfaro, Borja, Biurrun, Idoia, Knollová, Ilona, Agrillo, Emiliano, Campos, Juan Antonio, Čarni, Andraž, Crespo Jiménez, Guillermo, Ćuk, Mirjana, Dimopoulos, Panayotis, Ewald, Jörg, Fernández‐González, Federico, Gégout, Jean‐Claude, Indreica, Adrian, Jandt, Ute, Jansen, Florian, Kącki, Zygmunt, and Rašomavičius, Valerijus
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PLANT diversity , *FORESTS & forestry , *VASCULAR plants , *BROADLEAF forests , *CONIFEROUS forests , *FOREST plants - Abstract
Aim: The former continental‐scale studies modelled coarse‐grained plant species‐richness patterns (gamma diversity). Here we aim to refine this information for European forests by (a) modelling the number of vascular plant species that co‐occur in local communities (alpha diversity) within spatial units of 400 m2; and (b) assessing the factors likely determining the observed spatial patterns in alpha diversity. Location: Europe roughly within 12°W–30°E and 35–60°N. Taxon: Vascular plants. Methods: The numbers of co‐occurring vascular plant species were counted in 73,134 georeferenced vegetation plots. Each plot was classified by an expert system into deciduous broadleaf, coniferous or sclerophyllous forest. Random Forest models were used to map and explain spatial patterns in alpha diversity for each forest type separately using 19 environmental, land‐use and historical variables. Results: Our models explained from 51.0% to 70.9% of the variation in forest alpha diversity. The modelled alpha‐diversity pattern was dominated by a marked gradient from species‐poor north‐western to species‐rich south‐eastern Europe. The most prominent richness hotspots were identified in the Calcareous Alps and adjacent north‐western Dinarides, the Carpathian foothills in Romania and the Western Carpathians in Slovakia. Energy‐related factors, bedrock types and terrain ruggedness were identified as the main variables underlying the observed richness patterns. Alpha diversity increases especially with temperature seasonality in deciduous broadleaf forests, on limestone bedrock in coniferous forests and in areas with low annual actual evapotranspiration in sclerophyllous forests. Main conclusions: We provide the first predictive maps and analyses of environmental factors driving the alpha diversity of vascular plants across European forests. Such information is important for the general understanding of European biodiversity. This study also demonstrates a high potential of vegetation‐plot databases as sources for robust estimation of the number of vascular plant species that co‐occur at fine spatial grains across large areas. [ABSTRACT FROM AUTHOR]
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- 2019
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9. Assessing sampling coverage of species distribution in biodiversity databases.
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Sporbert, Maria, Bruelheide, Helge, Seidler, Gunnar, Keil, Petr, Jandt, Ute, Austrheim, Gunnar, Biurrun, Idoia, Campos, Juan Antonio, Čarni, Andraž, Chytrý, Milan, Csiky, János, De Bie, Els, Dengler, Jürgen, Golub, Valentin, Grytnes, John‐Arvid, Indreica, Adrian, Jansen, Florian, Jiroušek, Martin, Lenoir, Jonathan, and Luoto, Miska
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SPECIES distribution , *SPACE (Architecture) , *GEODATABASES , *PLANT species , *BIODIVERSITY , *DATABASES - Abstract
Aim: Biodiversity databases are valuable resources for understanding plant species distributions and dynamics, but they may insufficiently represent the actual geographic distribution and climatic niches of species. Here we propose and test a method to assess sampling coverage of species distribution in biodiversity databases in geographic and climatic space. Location: Europe. Methods: Using a test selection of 808,794 vegetation plots from the European Vegetation Archive (EVA), we assessed the sampling coverage of 564 European vascular plant species across both their geographic ranges and realized climatic niches. Range maps from the Chorological Database Halle (CDH) were used as background reference data to capture species geographic ranges and to derive species climatic niches. To quantify sampling coverage, we developed a box‐counting method, the Dynamic Match Coefficient (DMC), which quantifies how much a set of occurrences of a given species matches with its geographic range or climatic niche. DMC is the area under the curve measuring the match between occurrence data and background reference (geographic range or climatic niche) across grids with variable resolution. High DMC values indicate good sampling coverage. We applied null models to compare observed DMC values with expectations from random distributions across species ranges and niches. Results: Comparisons with null models showed that, for most species, actual distributions within EVA are deviating from null model expectations and are more clumped than expected in both geographic and climatic space. Despite high interspecific variation, we found a positive relationship in DMC values between geographic and climatic space, but sampling coverage was in general more random across geographic space. Conclusion: Because DMC values are species‐specific and most biodiversity databases are clearly biased in terms of sampling coverage of species occurrences, we recommend using DMC values as covariates in macro‐ecological models that use species as the observation unit. [ABSTRACT FROM AUTHOR]
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- 2019
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10. GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands.
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Dengler, Jürgen, Wagner, Viktoria, Dembicz, Iwona, García-Mijangos, Itziar, Naqinezhad, Alireza, Boch, Steffen, Chiarucci, Alessandro, Conradi, Timo, Filibeck, Goffredo, Guarino, Riccardo, Janišová, Monika, Steinbauer, Manuel J., Aćić, Svetlana, Acosta, Alicia T. R., Akasaka, Munemitsu, Allers, Marc-Andre, Apostolova, Iva, Axmanová, Irena, Bakan, Branko, and Baranova, Alina
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PLANT communities , *GRASSLANDS , *VEGETATION & climate , *BIODIVERSITY , *PLANT diversity - Abstract
GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (relevés) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001; ... 1,000 m?) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes and 2,800 nested-plot series. The key components are richness data and metadata. However, most included datasets also encompass compositional data. About 14,000 plots have near-complete records of terricolous bryophytes and lichens in addition to vascular plants. At present, GrassPlot contains data from 36 countries throughout the Palaearctic, spread across elevational gradients and major grassland types. GrassPlot with its multi-scale and multi-taxon focus complements the larger international vegetationplot databases, such as the European Vegetation Archive (EVA) and the global database "sPlot". Its main aim is to facilitate studies on the scale- and taxon-dependency of biodiversity patterns and drivers along macroecological gradients. GrassPlot is a dynamic database and will expand through new data collection coordinated by the elected Governing Board. We invite researchers with suitable data to join GrassPlot. Researchers with project ideas addressable with GrassPlot data are welcome to submit proposals to the Governing Board. [ABSTRACT FROM AUTHOR]
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- 2018
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11. The Romanian Grassland Database (RGD): historical background, current status and future perspectives.
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Vassilev, Kiril, Ruprecht, Eszter, Alexiu, Valeriu, Becker, Thomas, Beldean, Monica, Csergő, Claudia Biţă-Nicolae ;Anna Mária, Dzhovanova, Iliana, Filipova, Eva, Frink, József Pál, Gafta, Dan, Georgieva, Mariya, Germany, Markus S., Goia, Irina, Gumus, Media, Hennekens, Stephan M., Janišová, Monika, Knollová, Ilona, Koleva, Viktoriya, Kostadinova, Sofia, and Kuzmanović, Nevena
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GRASSLANDS , *PLANT communities , *ECOLOGY , *DATABASES - Abstract
This report describes the Romanian Grassland Database (RGD), registered under EU-RO-008 in the Global Index of Vegetation-Plot Databases (GIVD). This collaborative initiative aims to collect all available vegetationplot data (relevés) of grasslands and other open habitats from the territory of Romania to provide them for science, nationally and internationally, e.g. via the European Vegetation Archive (EVA) and the global database "sPlot". The database mainly contains vegetation-plots from not only wet, mesic, dry, saline, alpine and rocky grasslands, but also other vegetation types like heathlands, mires, ruderal, segetal, aquatic and cryptogamdominated vegetation. Currently, 21,685 relevés have mainly been digitised from literature sources (90%), while the remainder comes from individual unpublished sources (10%). We report on the background and history of the RGD, explain its "Data Property and Governance Rules" under which data are contributed and retrieved, and outline how the RGD can contribute to research in the fields of vegetation ecology, macroecology and conservation. [ABSTRACT FROM AUTHOR]
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- 2018
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12. Vegetation Database of Tatarstan.
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Prokhorov, Vadim, Rogova, Tatiana, and Kozhevnikova, Maria
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PLANT communities , *PLANT species , *PLANT diversity , *PLANT ecology , *HERBARIA - Abstract
The Republic of Tatarstan is situated between forest and steppe natural zones in the boreal mega-ecotone and has a high species and plant community diversity. The Vegetation Database of Tatarstan (GIVD Database ID: EU-RU-011) is based on phytosociological relevés, herbaria and floristic records. It includes over 8,000 plot records, almost half of them being georeferenced. The database is part of the European Vegetation Archive (EVA) and sPlot projects. In EVA it has a semi-restricted access mode. [ABSTRACT FROM AUTHOR]
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- 2017
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13. Nationwide Vegetation Plot Database - Sapienza University of Rome: state of the art, basic figures and future perspectives.
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Agrillo, Emiliano, Alessi, Nicola, Massimi, Marco, Spada, Francesco, De Sanctis, Michele, Francesconi, Fabio, Cambria, Vito E., and Attorre, Fabio
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VEGETATION classification , *BROADLEAF forests , *DECIDUOUS forests , *EVERGREENS , *BIOLOGICAL databases - Abstract
In recent years, interest in availability of georeferenced vegetation plots has stimulated or reinvigorated national initiatives to compile these data. In Italy, eleven vegetation databases are currently registered in the Global Index of Vegetation-Plot Databases (GIVD). In this paper we describe the Vegetation Plot Database - Sapienza University of Rome (VPD-Sapienza; GIVD code EU-IT-011), which started in 2012 and rapidly became one of the most prominent ones with a total of 21,917 georeferenced vegetation plots spanning across the country. These plots include 286,650 vascular plant species occurrences. Most of the plots belong to temperate deciduous forests (Querco roboris-Fagetea sylvaticae) and broadleaved evergreen forests (Quercetea ilicis), which together account for about 40% of the database. The need for the establishment of a national federated database integrating other national, regional, local and thematic databases is discussed in order to avoid setbacks such as duplication of data, taxonomic and syntaxonomic inconsistencies, and reduced efficiencies in collaborative projects, both at national and international levels. [ABSTRACT FROM AUTHOR]
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- 2017
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14. Different Sets of Traits Explain Abundance and Distribution Patterns of European Plants at Different Spatial Scales
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Biología vegetal y ecología, Landaren biologia eta ekologia, Sporbert, Maria, Welk, Erik, Seidler, Gunnar, Jandt, Ute, Aćić, Svetlana, Biurrun Galarraga, Miren Idoia, Campos Prieto, Juan Antonio, Čarni, Andraž, Cerabolini, Bruno E. L., Chytrý, Milan, Ćušterevska, Renata, Dengler, Jürgen, De Sanctis, Michele, Dziuba, Tetiana, Fagúndez, Jaime, Field, Richard, Golub, Valentin, He, Tianhua, Jansen, Florian, Lenoir, Jonathan, Marcenò, Corrado, Martín Forés, Irene, Moeslund, Jesper Erenskjold, Moretti, Marco, Niinemets, Ü., Peñuelas, J., Pérez Haase, Aarón, Vandvik, Vigdis, Vassilev, Kiril, Vynokurov, Denys, Bruelheide, Helge, Biología vegetal y ecología, Landaren biologia eta ekologia, Sporbert, Maria, Welk, Erik, Seidler, Gunnar, Jandt, Ute, Aćić, Svetlana, Biurrun Galarraga, Miren Idoia, Campos Prieto, Juan Antonio, Čarni, Andraž, Cerabolini, Bruno E. L., Chytrý, Milan, Ćušterevska, Renata, Dengler, Jürgen, De Sanctis, Michele, Dziuba, Tetiana, Fagúndez, Jaime, Field, Richard, Golub, Valentin, He, Tianhua, Jansen, Florian, Lenoir, Jonathan, Marcenò, Corrado, Martín Forés, Irene, Moeslund, Jesper Erenskjold, Moretti, Marco, Niinemets, Ü., Peñuelas, J., Pérez Haase, Aarón, Vandvik, Vigdis, Vassilev, Kiril, Vynokurov, Denys, and Bruelheide, Helge
- Abstract
Aim Plant functional traits summarize the main variability in plant form and function across taxa and biomes. We assess whether geographic range size, climatic niche size, and local abundance of plants can be predicted by sets of traits (trait syndromes) or are driven by single traits. Location Eurasia. Methods Species distribution maps were extracted from the Chorological Database Halle to derive information on the geographic range size and climatic niche size for 456 herbaceous, dwarf shrub and shrub species. We estimated local species abundances based on 740,113 vegetation plots from the European Vegetation Archive, where abundances were available as plant species cover per plot. We compiled a complete species-by-trait matrix of 20 plant functional traits from trait databases (TRY, BiolFlor and CLO-PLA). The relationships of species' geographic range size, climatic niche size and local abundance with single traits and trait syndromes were tested with multiple linear regression models. Results Generally, traits were more strongly related to local abundances than to broad-scale species distribution patterns in geographic and climatic space (range and niche size), but both were better predicted by trait combinations than by single traits. Local abundance increased with leaf area and specific leaf area (SLA). Geographic range size and climatic niche size both increased with SLA. While range size increased with plant height, niche size decreased with leaf carbon content. Conclusion Functional traits matter for species' abundance and distribution at both local and broad geographic scale. Local abundances are associated with different combinations of traits as compared to broad-scale distributions, pointing to filtering by different environmental and ecological factors acting at distinct spatial scales. However, traits related to the leaf economics spectrum were important for species' abundance and occurrence at both spatial scales. This finding emphasizes the general i
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- 2021
15. Facebook groups as citizen science tools for plant species monitoring
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Emanuele Genduso, Milan Chytrý, Riccardo Guarino, Gianmaria Bonari, Dario Salemi, Josep Padullés Cubino, Corrado Marcenò, Flavia Landucci, Alessandro Silvestre Gristina, Emiliano Agrillo, Alfonso La Rosa, Vincenzo Ilardi, Gianpietro Giusso del Galdo, Marcenò, Corrado, Padullés Cubino, Josep, Chytrý, Milan, Genduso, Emanuele, Salemi, Dario, La Rosa, Alfonso, Gristina, Alessandro Silvestre, Agrillo, Emiliano, Bonari, Gianmaria, Giusso del Galdo, Gianpietro, Ilardi, Vincenzo, Landucci, Flavia, and Guarino, Riccardo
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0106 biological sciences ,Flora ,Facebook ,Ecology ,Social network ,databases ,business.industry ,Environmental resource management ,Mediterranean ,010603 evolutionary biology ,01 natural sciences ,flora ,Geography ,plant traits ,Settore BIO/03 - Botanica Ambientale E Applicata ,Plant species ,Citizen science ,social network ,Plant traits ,business ,Sicily ,010606 plant biology & botany ,databases, European Vegetation Archive (EVA), Facebook, flora, Mediterranean, plant traits, Sicily, social network ,European Vegetation Archive (EVA) - Abstract
I social network sono canali di comunicazione utilizzati per condividere enormi quantità di dati, che possono essere utilizzati per la ricerca scientifica, anche nel campo della biodiversità. Per sapere quanto i dati ricavati dai social network possono integrare quelli raccolti per scopi scientifici, è necessario individuarne i bias. Utilizzando i dati estratti da un gruppo Facebook specializzato nella flora vascolare siciliana, abbiamo analizzato quali sono i caratteri che aumentano la probabilità che una pianta spontanea venga fotografata e postata su un social network. A tal fine, abbiamo confrontato frequenze e attributi delle specie fotografate dai membri del gruppo Facebook con quelli delle specie registrate nel database EVA, relative a 6.366 rilevamenti vegetazionali della Sicilia. I nostri risultati suggeriscono che i dati provenienti dal gruppo Facebook analizzato sono affetti da bias diversi da quelli relativi a dati floristici raccolti per altri fini, ad esempio, per il rilevamento della vegetazione. I membri del gruppo Facebook hanno intercettato con maggior frequenza specie aliene e specie rare rispetto a quanto rilevato da chi studia la vegetazione, dimostrando che i dati contenuti nei social network offrono un importante complemento a quelli raccolti dagli scienziati per fini di ricerca. Sintesi e applicazioni. Malgrado Facebook non supporti la georeferenziazione dei dati, né una query per l'accesso e l'analisi degli stessi, esso rappresenta una potenziale fonte di dati sulla biodiversità, utili per integrare quelli raccolti da botanici professionisti. Il principale vantaggio dei dati provenienti dai social network è il loro elevato dinamismo, poiché registrano la presenza di una data specie quasi in tempo reale. Pertanto, i dati raccolti da gruppi Facebook moderati da esperti possono risultare utili (1) per monitorare le dinamiche di popolazione di specie minacciate ed esotiche; (2) come informazioni aggiuntive sulla presenza di specie rare, in particolare per quelle che maggiormente attraggono i botanici dilettanti, come le orchidee; (3) per individuare tempestivamente la presenza di nuove esotiche potenzialmente invasive; (4) per studi fenologici, in particolare per monitorare l’inizio della stagione di fioritura delle specie. Social networks offer communication channels through which people share huge amounts of primary data that can be used for scientific analyses, including biodiversity research. To understand to what extent data extracted from social networks could complement data collected for scientific purposes, it is necessary to quantify the bias of such data. We analysed which plant traits increased the probability of a wild‐growing plant species to be photographed and posted to a social network based on the data from an unstructured citizen science tool; a Facebook group focused on the vascular flora of Sicily (Italy). Then, we compared botanical data collected by this Facebook group members with data collected by scientists in 6,366 vegetation plots sampled across Sicily, stored in the EVA database. Our results suggested that data proceeding from the analysed Facebook group were affected by various sampling biases, which differed from the biases inherent to other types of biodiversity data such as those from vegetation plots. Facebook users recorded a higher proportion of red‐listed and alien species than vegetation scientists. Therefore, social networks can provide a valuable complement to the data collected by scientists for research purposes. Synthesis and applications. Despite Facebook does not support geotagging and interface for data access and analysis, it is an invaluable source of biodiversity data that could complement those collected by professional researchers. The main advantage of data from social networks is their high dynamism, as they report large amounts of species occurrences in almost real time. Therefore, citizen science data from a Facebook group where the records are curated by expert volunteers can be used (a) for monitoring population dynamics of threatened and alien species; (b) as a source of additional data on rare species occurrences, particularly for plants that are attractive for amateur botanists, such as orchids; (c) for early warning systems of potential new invasions; and (4) for phenological studies, especially at the beginning of the flowering season.
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- 2021
16. EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats
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Viktor Onyshchenko, Rosario G. Gavilán, Mirjana Ćuk, Tatiana Braslavskaya, Eleni Tryfon, Andraž Čarni, Andrey Yu. Korolyuk, Tetiana Dziuba, Anni Jašková, Milan Valachovič, Lise Maciejewski, Denys Vynokurov, Friedemann Goral, Mette Palitzsch Lund, Ali Kavgaci, Joachim Schrautzer, Els De Bie, Olga N. Demina, Pavel Novák, Elena B. Tikhonova, Michal Hájek, Jozef Šibík, I. A. Lavrinenko, Helge Bruelheide, Jan B.M.J. Jansen, Yakiv Didukh, Anna Kuzemko, Pauline Delbosc, Florian Jansen, Ulrich Graf, Lubomír Tichý, Maike Isermann, Maria Vladimirovna Lebedeva, Rania Spyropoulou, Tomáš Peterka, Daniel Dítě, Veronika Kalníková, O. V. Lavrinenko, Aleksander Marinšek, Oleg L. Kuznetsov, Constantin Mardari, Nadezhda Goncharova, Idoia Biurrun, Wolfgang Willner, Renata Ćušterevska, Valentin Golub, Gianpietro Giusso del Galdo, Laura Casella, Željko Škvorc, Stephan M. Hennekens, Domas Uogintas, Joop H.J. Schaminée, Jürgen Dengler, Jörg Ewald, Viktor A. Smagin, Maxim G. Napreenko, Vadim Prokhorov, Larisa Khanina, Zdeňka Lososová, Corrado Marcenò, Ute Jandt, Zygmunt Kącki, Remigiusz Pielech, Svetlana Aćić, Valerijus Rašomavičius, János Bölöni, Adrian Indreica, Jiří Danihelka, Solvita Rūsiņa, Gianmaria Bonari, Fabio Attorre, Kiril Vassilev, Martin Jiroušek, Steffen Boch, Tatiana Lysenko, Aaron Pérez-Haase, S. M. Yamalov, John Janssen, Ilona Knollová, Urban Šilc, Dominik Zukal, Māris Laiviņš, Emiliano Agrillo, Zvjezdana Stančić, Milan Chytrý, Sylvain Abdulhak, Mariya Kozhevnikova, Erwin Bergmeier, John S. Rodwell, Flavia Landucci, Filip Küzmič, Angela Stanisci, Douglas Evans, Maria Pilar Rodríguez Rojo, Borja Jiménez-Alfaro, Ladislav Mucina, Juan Antonio Campos, Jean Claude Gégout, Tiina Tonteri, SILVA (SILVA), AgroParisTech-Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Patrimoine naturel (PatriNat), and Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB)
- Subjects
0106 biological sciences ,Bos- en Landschapsecologie ,coastal habitat ,diagnostic species ,distribution map ,dune vegetation, European Nature Information System (EUNIS) ,European Vegetation Archive (EVA) ,expert system ,forest ,grassland ,habitat classification ,man-made habitat ,shrubland ,vegetation database ,vegetation plot ,wetland ,Biodiversity ,Distribution (economics) ,Wetland ,computer.software_genre ,01 natural sciences ,Grassland ,Forest and Landscape Ecology ,Plant ecology ,biodiversity ,geography.geographical_feature_category ,Ecology ,Vegetation ,PE&RC ,Europe ,Geography ,Habitat ,Vegetatie, Bos- en Landschapsecologie ,Europa ,European Nature Information System (EUNIS) ,Cartography ,dune vegetation ,Habitat (Ecology) ,databases ,Hàbitat (Ecologia) ,Management, Monitoring, Policy and Law ,010603 evolutionary biology ,Shrubland ,vegetation ,invasions ,14. Life underwater ,577: Ökologie ,Vegetatie ,Nature and Landscape Conservation ,forests ,business.industry ,Ecologia vegetal ,wetland formalized classification ,alien plants ,15. Life on land ,Expert system ,fidelity ,example ,Vegetation, Forest and Landscape Ecology ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,business ,man‐made habitat ,computer ,010606 plant biology & botany - Abstract
Aim The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location Europe. Methods We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNIS-ESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment. The previous versions of the expert system and related reports were produced within a contract from the European Environment Agency to Wageningen Environmental Research and Masaryk University. The opinions expressed are those of the contractor and do not represent the Agency's official position. EVA data management and preparation of this paper were supported by the Czech Science Foundation (project no. 19-28491X to MC, LT, IK, TP, CM, JDa, MH, PN, DZ, GB, AJ, AKu, ZL and DV). IB and JAC were supported by the Basque Government (project no. T936-16). TB, ET, and LK were supported by the Ministry of Science and Higher Education of the Russian Federation (TB and ET project no. AAAA-A18-118052590019-7; LK project no. AAAA-A19-119012490096-2).
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- 2020
- Full Text
- View/download PDF
17. EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats
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Schmidtlein, Sebastian, Chytry, Milan, Tichy, Lubomir, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez-Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun, Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, de Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán García, Rosario Gloria, Gégout, Jean-Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Yu. Korolyuk, Andrey, Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez-Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, María Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, Schaminée, Joop H. J., Schmidtlein, Sebastian, Chytry, Milan, Tichy, Lubomir, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez-Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun, Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, de Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán García, Rosario Gloria, Gégout, Jean-Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Yu. Korolyuk, Andrey, Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez-Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, María Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, and Schaminée, Joop H. J.
- Abstract
Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location: Europe. Methods: We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic ex, Czech Science Foundation, Gobierno Vasco, Ministry of Science and Higher Education of the Russian Federation, European Environment Agency to Wageningen Environmental Research, Masaryk University, Depto. de Farmacología, Farmacognosia y Botánica, Fac. de Farmacia, TRUE, pub
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- 2020
18. EUNIS Habitat Classification: Expert system, characteristic species combinations and distribution maps of European habitats
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Biología vegetal y ecología, Landaren biologia eta ekologia, Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun Galarraga, Miren Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos Prieto, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, De Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán, Rosario G., Gégout, Jean Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Korolyuk, Andrey Yu., Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, Maria Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, Schaminée, Joop H. J., Biología vegetal y ecología, Landaren biologia eta ekologia, Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun Galarraga, Miren Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos Prieto, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, De Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán, Rosario G., Gégout, Jean Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Korolyuk, Andrey Yu., Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, Maria Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, and Schaminée, Joop H. J.
- Abstract
Aim The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location Europe. Methods We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert
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- 2020
19. EUNIS-ESy: Expert system for automatic classification of European vegetation plots to EUNIS habitats
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Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A.M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez-Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun, Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, De Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán, Rosario G., Gégout, Jean Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Yu. Korolyuk, Andrey, Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez-Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, Maria Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, Schaminée, Joop H.J., Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A.M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez-Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun, Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, De Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán, Rosario G., Gégout, Jean Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Yu. Korolyuk, Andrey, Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez-Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, Maria Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, and Schaminée, Joop H.J.
- Abstract
EUNIS-ESy is an expert system for automatic classification of European vegetation plots to habitat types of the EUNIS Habitat Classification. The EUNIS classification and the principles of the expert system are described by Chytrý et al. (2020). The classification of a set of vegetation plots can be run using the JUICE program (Tichý 2002; https://www.sci.muni.cz/botany/juice/), TURBOVEG 3 program (Hennekens 2015) and an R script (Bruelheide et al. 2021). This dataset contains two parts: (1) the expert system and related files necessary for running it; (2) characterization of EUNIS habitats based on the results of the expert system classification., EUNIS-ESy is an expert system for automatic classification of European vegetation plots to habitat types of the EUNIS Habitat Classification. The EUNIS classification and the principles of the expert system are described by Chytrý et al. (2020). The classification of a set of vegetation plots can be run using the JUICE program (Tichý 2002; https://www.sci.muni.cz/botany/juice/), TURBOVEG 3 program (Hennekens 2015) and an R script (Bruelheide et al. 2021). This dataset contains two parts: (1) the expert system and related files necessary for running it; (2) characterization of EUNIS habitats based on the results of the expert system classification. 1. Expert system and related files necessary to run it 1.1. EUNIS-ESy-2021-06-01.txt – a file containing the script for the classification of vegetation plots by EUNIS-ESy. This version contains tested definitions for the revised classification vegetated Marine (coastal saltmarshes), Coastal, Wetland, Grassland, Shrubland, Forest, Inland sparsely vegetated and Man-made habitats, and preliminary non-tested definitions of the older classification of Marine, Aquatic and Inland sparsely vegetated habitats. 1.2. Nomenclature-translation-from-Turboveg-2-databases.zip – an archive containing the scripts for automatic translation of taxon concepts and names used in individual European Turboveg 2 databases (Hennekens & Schaminée 2001; https://www.synbiosys.alterra.nl/turboveg/) to the nomenclature that can be used as an input for EUNIS-ESy. 1.3. EUNIS-ESy-User-Guide.pdf – a brief user guide to the classification of vegetation plots by EUNIS-ESy using the JUICE program. Please read this guide carefully before running the expert system to avoid misclassifications. 2. Characterization of the EUNIS habitats based on the results of the EUNIS-ESy classification 2.1. EUNIS-habitats-2021-06-01.xlsx – the current list o
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- 2020
20. Assessing sampling coverage of species distribution in biodiversity databases
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Idoia Biurrun, Helge Bruelheide, Corrado Marcenò, Gunnar Seidler, Jonathan Lenoir, Jürgen Dengler, Valentin Golub, Vigdis Vandvik, Jesper Erenskjold Moeslund, John-Arvid Grytnes, Gunnar Austrheim, Ute Jandt, Solvita Rūsiņa, Aaron Pérez-Haase, Els De Bie, Miska Luoto, Juan Antonio Campos, Erik Welk, Milan Chytrý, Maria Sporbert, János Csiky, Andraž Čarni, Martin Jiroušek, Kiril Vassilev, Florian Jansen, Adrian Indreica, Petr Keil, Department of Geosciences and Geography, Helsinki Institute of Sustainability Science (HELSUS), BioGeoClimate Modelling Lab, Deutsche Forschungsgemeinschaft - German Research Foundation (DFG), Martin-Luther-Universität Halle Wittenberg (MLU), Philips Research Europe - Hamburg, Sector Medical Imaging Systems, Philips Research, National Institute of Biology [Ljubljana] (NIB), Masaryk University [Brno] (MUNI), University of Pecs, Universität Bayreuth, Ecologie et Dynamique des Systèmes Anthropisés - UMR CNRS 7058 (EDYSAN), Centre National de la Recherche Scientifique (CNRS)-Université de Picardie Jules Verne (UPJV), Thule Institute, University of Oulu, University of Bergen (UiB), and Institute of Biology, Geobotany and Botanical Garden
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0106 biological sciences ,Chorological Database Halle (CDH) ,Range (biology) ,multi-scale ,[SDE.MCG]Environmental Sciences/Global Changes ,vegetation-plot databases ,Species distribution ,Plant Science ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,computer.software_genre ,010603 evolutionary biology ,01 natural sciences ,macro-ecology ,333: Bodenwirtschaft und Ressourcen ,577: Ökologie ,Realized niche width ,Macroecology ,Ecological niche ,[SDV.EE]Life Sciences [q-bio]/Ecology, environment ,spatial scale ,Ecology ,Database ,Null model ,vegetation plot databases ,climatic niche ,vascular plant ,Sampling (statistics) ,species range ,Vegetation ,15. Life on land ,Dynamic Match Coefficient (DMC) ,sampling bias ,Geography ,realized niche ,1181 Ecology, evolutionary biology ,macroecology ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,computer ,010606 plant biology & botany ,European Vegetation Archive (EVA) - Abstract
Aim Biodiversity databases are valuable resources for understanding plant species distributions and dynamics, but they may insufficiently represent the actual geographic distribution and climatic niches of species. Here we propose and test a method to assess sampling coverage of species distribution in biodiversity databases in geographic and climatic space. Location Europe. Methods Using a test selection of 808,794 vegetation plots from the European Vegetation Archive (EVA), we assessed the sampling coverage of 564 European vascular plant species across both their geographic ranges and realized climatic niches. Range maps from the Chorological Database Halle (CDH) were used as background reference data to capture species geographic ranges and to derive species climatic niches. To quantify sampling coverage, we developed a box-counting method, the Dynamic Match Coefficient (DMC), which quantifies how much a set of occurrences of a given species matches with its geographic range or climatic niche. DMC is the area under the curve measuring the match between occurrence data and background reference (geographic range or climatic niche) across grids with variable resolution. High DMC values indicate good sampling coverage. We applied null models to compare observed DMC values with expectations from random distributions across species ranges and niches. Results Comparisons with null models showed that, for most species, actual distributions within EVA are deviating from null model expectations and are more clumped than expected in both geographic and climatic space. Despite high interspecific variation, we found a positive relationship in DMC values between geographic and climatic space, but sampling coverage was in general more random across geographic space. Conclusion Because DMC values are species-specific and most biodiversity databases are clearly biased in terms of sampling coverage of species occurrences, we recommend using DMC values as covariates in macroecological models that use species as the observation unit. This article is protected by copyright. All rights reserved.
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- 2019
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21. Circummed pine forest database: An electronic archive for mediterranean and submediterranean pine forest vegetation data
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Adriano Stinca, Milan Chytrý, Yakiv Didukh, Daniele Viciani, Riccardo Guarino, Coşkun Sağlam, Alicia Teresa Rosario Acosta, José Carlos Costa, Ilona Knollová, Carlos Neto, S. Pesaresi, Marco Landi, Erwin Bergmeier, Stephan M. Hennekens, Emanuele Fanfarillo, Federico Selvi, Andrea Bertacchi, Claudia Turcato, Süleyman Çoban, Pavla Vlčková, Fotios Xystrakis, Alexandros Sotiriou, Bonari Gianmaria, Rossen Tzonev, Claudia Angiolini, Daniela Gigante, Leonardo Rosati, Bonari, G, Knollová, I, Vlčková, P, Xystrakis, F, Çoban, S, Sağlam, C, Didukh, Yp, Hennekens, Sm, Acosta, Atr, Angiolini, C, Bergmeier, E, Bertacchi, A, Costa, Jc, Farfarillo, E, Gigante, D, Guarino, R, Landi, M, Neto, C, Pesaresi, S, Rosati, L, Selvi, F, Sotiriou, A, Stinca, A, Turcato, C, Tzonev, R, Viciani, V, Chytrý, M, Gianmaria, Bonari, Knollová, Ilona, Vlčková, Pavla, Xystrakis, Fotio, Çoban, Süleyman, Sağlam, Coşkun, Didukh, Yakiv P., Hennekens, Stephan M., Acosta, Alicia T. R., Angiolini, Claudia, Bergmeier, Erwin, Bertacchi, Andrea, Costa, José C., Fanfarillo, Emanuele, Gigante, Daniela, Guarino, Riccardo, Landi, Marco, Neto, Carlos S., Pesaresi, Simone, Rosati, Leonardo, Selvi, Federico, Sotiriou, Alexandro, Stinca, Adriano, Turcato, Claudia, Tzonev, Rossen, Viciani, Daniele, Chytrý, Milan, and Acosta, Alicia T.R.
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0106 biological sciences ,Mediterranean climate ,Vegetation classification ,Bos- en Landschapsecologie ,Biodiversity ,Plant Science ,computer.software_genre ,01 natural sciences ,Mediterranean Basin ,Turboveg ,Relevé ,medicine ,Forest and Landscape Ecology ,Macroecology ,Pinu ,Vegetatie ,CircumMed Pine Forest Database • European Vegetation Archive (EVA) • forest vegetation • Mediterranean Basin • phytosociology • pine forest • Pinus • relevé • Turboveg • vegetation plot ,Vegetation ,Database ,Phytosociology ,15. Life on land ,Pinus ,Vegetation plot ,Geography ,Thematic map ,CircumMed Pine Forest Database ,European Vegetation Archive (EVA) ,Forest vegetation ,Pine forest ,Vegetatie, Bos- en Landschapsecologie ,Vegetation, Forest and Landscape Ecology ,medicine.symptom ,Vegetation (pathology) ,computer ,010606 plant biology & botany - Abstract
Large thematic databases of vegetation plots are increasingly needed for vegetation studies and biodiversity research. In this paper, we present the CircumMed Pine Forest Database (GIVD ID: EU-00-026), which in November 2018, comprised records from 6317 pine-dominated vegetation plots (relevés) and associated vegetation types from 20 countries of the Mediterranean Basin, Near East and Crimea. These vegetation plots were collected through a detailed literature search for plots not previously included in the European Vegetation Archive (EVA), in order to fill geographic gaps in data coverage. The database comprises Mediterranean (including Oromediterranean) pine-forest vegetation plots from both published and unpublished sources. All vegetation plots are georeferenced, although coordinates vary in accuracy. The database is accessible through EVA or from its Custodian. We anticipate the CircumMed Pine Forest Database will be a valuable resource for various types of broad-scale studies in the fields of vegetation classification, plant invasion ecology, macroecology and biological conservation. Abbreviations: EU = European Union; EVA = European Vegetation Archive; EVS = European Vegetation Survey; GIVD = Global Index of Vegetation-Plot Databases.
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- 2019
22. GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands
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Dengler, Juergen, Wagner, Viktoria, Dembicz, Iwona, Garcia-Mijangos, Itziar, Naqinezhad, Alireza, Boch, Steffen, Chiarucci, Alessandro, Conradi, Timo, Filibeck, Goffredo, Guarino, Riccardo, Janisova, Monika, Steinbauer, Manuel J., Acic, Svetlana, Acosta, Alicia T. R., Akasaka, Munemitsu, Allers, Marc-Andre, Apostolova, Iva, Axmanova, Irena, Bakan, Branko, Baranova, Alina, Bardy-Durchhalter, Manfred, Bartha, Sandor, Baumann, Esther, Becker, Thomas, Becker, Ute, Belonovskaya, Elena, Bengtsson, Karin, Benito Alonso, Jose Luis, Berastegi, Asun, Bergamini, Ariel, Bonini, Ilaria, Bruun, Hans Henrik, Budzhak, Vasyl, Bueno, Alvaro, Antonio Campos, Juan, Cancellieri, Laura, Carboni, Marta, Chocarro, Cristina, Conti, Luisa, Czarniecka-Wiera, Marta, De Frenne, Pieter, Deak, Balazs, Didukh, Yakiv P., Diekmann, Martin, Dolnik, Christian, Dupre, Cecilia, Ecker, Klaus, Ermakov, Nikolai, Erschbamer, Brigitta, Escudero, Adrian, Etayo, Javier, Fajmonova, Zuzana, Felde, Vivian A., Fernandez Calzado, Maria Rosa, Finckh, Manfred, Fotiadis, Georgios, Fracchiolla, Mariano, Ganeva, Anna, Garcia-Magro, Daniel, Gavilan, Rosario G., Germany, Markus, Giladi, Itamar, Gillet, Francois, Giusso del Galdo, Gian Pietro, Gonzalez, Jose M., Grytnes, John-Arvid, Hajek, Michal, Hajkova, Petra, Helm, Aveliina, Herrera, Mercedes, Hettenbergerova, Eva, Hobohm, Carsten, Huellbusch, Elisabeth M., Ingerpuu, Nele, Jandt, Ute, Jeltsch, Florian, Jensen, Kai, Jentsch, Anke, Jeschke, Michael, Jimenez-Alfaro, Borja, Kacki, Zygmunt, Kakinuma, Kaoru, Kapfer, Jutta, Kavgaci, Ali, Kelemen, Andras, Kiehl, Kathrin, Koyama, Asuka, Koyanagi, Tomoyo F., Kozub, Lukasz, Kuzemko, Anna, Kyrkjeeide, Magni Olsen, Landi, Sara, Langer, Nancy, Lastrucci, Lorenzo, Lazzaro, Lorenzo, Lelli, Chiara, Leps, Jan, Loebel, Swantje, Luzuriaga, Arantzazu L., Maccherini, Simona, Magnes, Martin, Malicki, Marek, Marceno, Corrado, Mardari, Constantin, Mauchamp, Leslie, May, Felix, Michelsen, Ottar, Mesa, Joaquin Molero, Molnar, Zsolt, Moysiyenko, Ivan Y., Nakaga, Yuko K., Natcheva, Rayna, Noroozi, Jalil, Pakeman, Robin J., Palpurina, Salza, Partel, Meelis, Paetsch, Ricarda, Pauli, Harald, Pedashenko, Hristo, Peet, Robert K., Pielech, Remigiusz, Pipenbaher, Natasa, Pirini, Chrisoula, Pleskova, Zuzana, Polyakova, Mariya A., Prentice, Honor C., Reinecke, Jennifer, Reitalu, Triin, Pilar Rodriguez-Rojo, Maria, Rolecek, Jan, Ronkin, Vladimir, Rosati, Leonardo, Rosén, Ejvind, Ruprecht, Eszter, Rusina, Solvita, Sabovljevic, Marko, Maria Sanchez, Ana, Savchenko, Galina, Schuhmacher, Oliver, Skornik, Sonja, Sperandii, Marta Gaia, Staniaszek-Kik, Monika, Stevanovic-Dajic, Zora, Stock, Marin, Suchrow, Sigrid, Sutcliffe, Laura M. E., Swacha, Grzegorz, Sykes, Martin, Szabo, Anna, Talebi, Amir, Tanase, Catalin, Terzi, Massimo, Tolgyesi, Csaba, Torca, Marta, Torok, Peter, Tothmeresz, Bela, Tsarevskaya, Nadezda, Tsiripidis, Ioannis, Tzonev, Rossen, Ushimaru, Atushi, Valko, Orsolya, van der Maarel, Eddy, Vanneste, Thomas, Vashenyak, Iuliia, Vassilev, Kiril, Viciani, Daniele, Villar, Luis, Virtanen, Risto, Kosic, Ivana Vitasovic, Wang, Yun, Weiser, Frank, Went, Julia, Wesche, Karsten, White, Hannah, Winkler, Manuela, Zaniewski, Piotr T., Zhang, Hui, Ziv, Yaron, Znamenskiy, Sergey, Biurrun, Idoia, Dengler, Juergen, Wagner, Viktoria, Dembicz, Iwona, Garcia-Mijangos, Itziar, Naqinezhad, Alireza, Boch, Steffen, Chiarucci, Alessandro, Conradi, Timo, Filibeck, Goffredo, Guarino, Riccardo, Janisova, Monika, Steinbauer, Manuel J., Acic, Svetlana, Acosta, Alicia T. R., Akasaka, Munemitsu, Allers, Marc-Andre, Apostolova, Iva, Axmanova, Irena, Bakan, Branko, Baranova, Alina, Bardy-Durchhalter, Manfred, Bartha, Sandor, Baumann, Esther, Becker, Thomas, Becker, Ute, Belonovskaya, Elena, Bengtsson, Karin, Benito Alonso, Jose Luis, Berastegi, Asun, Bergamini, Ariel, Bonini, Ilaria, Bruun, Hans Henrik, Budzhak, Vasyl, Bueno, Alvaro, Antonio Campos, Juan, Cancellieri, Laura, Carboni, Marta, Chocarro, Cristina, Conti, Luisa, Czarniecka-Wiera, Marta, De Frenne, Pieter, Deak, Balazs, Didukh, Yakiv P., Diekmann, Martin, Dolnik, Christian, Dupre, Cecilia, Ecker, Klaus, Ermakov, Nikolai, Erschbamer, Brigitta, Escudero, Adrian, Etayo, Javier, Fajmonova, Zuzana, Felde, Vivian A., Fernandez Calzado, Maria Rosa, Finckh, Manfred, Fotiadis, Georgios, Fracchiolla, Mariano, Ganeva, Anna, Garcia-Magro, Daniel, Gavilan, Rosario G., Germany, Markus, Giladi, Itamar, Gillet, Francois, Giusso del Galdo, Gian Pietro, Gonzalez, Jose M., Grytnes, John-Arvid, Hajek, Michal, Hajkova, Petra, Helm, Aveliina, Herrera, Mercedes, Hettenbergerova, Eva, Hobohm, Carsten, Huellbusch, Elisabeth M., Ingerpuu, Nele, Jandt, Ute, Jeltsch, Florian, Jensen, Kai, Jentsch, Anke, Jeschke, Michael, Jimenez-Alfaro, Borja, Kacki, Zygmunt, Kakinuma, Kaoru, Kapfer, Jutta, Kavgaci, Ali, Kelemen, Andras, Kiehl, Kathrin, Koyama, Asuka, Koyanagi, Tomoyo F., Kozub, Lukasz, Kuzemko, Anna, Kyrkjeeide, Magni Olsen, Landi, Sara, Langer, Nancy, Lastrucci, Lorenzo, Lazzaro, Lorenzo, Lelli, Chiara, Leps, Jan, Loebel, Swantje, Luzuriaga, Arantzazu L., Maccherini, Simona, Magnes, Martin, Malicki, Marek, Marceno, Corrado, Mardari, Constantin, Mauchamp, Leslie, May, Felix, Michelsen, Ottar, Mesa, Joaquin Molero, Molnar, Zsolt, Moysiyenko, Ivan Y., Nakaga, Yuko K., Natcheva, Rayna, Noroozi, Jalil, Pakeman, Robin J., Palpurina, Salza, Partel, Meelis, Paetsch, Ricarda, Pauli, Harald, Pedashenko, Hristo, Peet, Robert K., Pielech, Remigiusz, Pipenbaher, Natasa, Pirini, Chrisoula, Pleskova, Zuzana, Polyakova, Mariya A., Prentice, Honor C., Reinecke, Jennifer, Reitalu, Triin, Pilar Rodriguez-Rojo, Maria, Rolecek, Jan, Ronkin, Vladimir, Rosati, Leonardo, Rosén, Ejvind, Ruprecht, Eszter, Rusina, Solvita, Sabovljevic, Marko, Maria Sanchez, Ana, Savchenko, Galina, Schuhmacher, Oliver, Skornik, Sonja, Sperandii, Marta Gaia, Staniaszek-Kik, Monika, Stevanovic-Dajic, Zora, Stock, Marin, Suchrow, Sigrid, Sutcliffe, Laura M. E., Swacha, Grzegorz, Sykes, Martin, Szabo, Anna, Talebi, Amir, Tanase, Catalin, Terzi, Massimo, Tolgyesi, Csaba, Torca, Marta, Torok, Peter, Tothmeresz, Bela, Tsarevskaya, Nadezda, Tsiripidis, Ioannis, Tzonev, Rossen, Ushimaru, Atushi, Valko, Orsolya, van der Maarel, Eddy, Vanneste, Thomas, Vashenyak, Iuliia, Vassilev, Kiril, Viciani, Daniele, Villar, Luis, Virtanen, Risto, Kosic, Ivana Vitasovic, Wang, Yun, Weiser, Frank, Went, Julia, Wesche, Karsten, White, Hannah, Winkler, Manuela, Zaniewski, Piotr T., Zhang, Hui, Ziv, Yaron, Znamenskiy, Sergey, and Biurrun, Idoia
- Abstract
GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (releves) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001;... 1,000 m(2)) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes and 2,800 nested-plot series. The key components are richness data and metadata. However, most included datasets also encompass compositional data. About 14,000 plots have near-complete records of terricolous bryophytes and lichens in addition to vascular plants. At present, GrassPlot contains data from 36 countries throughout the Palaearctic, spread across elevational gradients and major grassland types. GrassPlot with its multi-scale and multi-taxon focus complements the larger international vegetationplot databases, such as the European Vegetation Archive (EVA) and the global database " sPlot". Its main aim is to facilitate studies on the scale-and taxon-dependency of biodiversity patterns and drivers along macroecological gradients. GrassPlot is a dynamic database and will expand through new data collection coordinated by the elected Governing Board. We invite researchers with suitable data to join GrassPlot. Researchers with project ideas addressable with GrassPlot data are welcome to submit proposals to the Governing Board.
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- 2018
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23. CircumMed+Euro pine forest database: an electronic archive for Mediterranean and European forests
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Bonari, Gianmaria, Knollova, Ilona, Vickova, Pavla, Xystrakis, Fotios, Çoban, Suleyman, Saglam, Coskum, Didukh, Yakiv P., Hennekens, Stephan M., Acosta, Alicia T.R., Angiolini, Claudia, Bergmeier, Erwin, Bertacchi, Andrea, Costa, José Carlos, Farfarillo, Emanuele, Gigante, Daniela, Guarino, Riccardo, Landi, Marco, Neto, Carlos S., Pesaresi, Simone, Rosati, Leonardo, Selvi, Federico, Sotiriou, Alex, Stinca, Adriano, Turcato, Claudia, Tzonev, Rossen, Viciani, Daniele, and Chytry, Milan
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forest vegetation ,phytosociology ,Mediterranean basin ,pine forests ,Pinus ,Turboveg ,Relevé ,vegetation plot ,European Vegetation Archive (EVA) - Abstract
Large thematic databases of vegetation-plots are increasingly needed for vegetation studies and biodiversity research. In this paper, we present the CircumMed+Euro Pine Forest Database (GIVD ID: EU-00-026), which in September 2018 encompassed 5590 records from pine-dominated vegetation plots (relevés) and associated vegetation types from 23 countries of temperate Europe, Eastern Mediterranean and North Africa. These vegetation plots were collected through a detailed literature search for plots not included in the European Vegetation Archive (EVA). The database includes plots from 192 bibliographic references and unpublished vegetation plots by different authors. All vegetation plots are georeferenced, and coordinates are available with different accuracy as reported by the authors. The database is managed by the Vegetation Science Group, Department of Botany and Zoology of the Masaryk University in Brno (Czech Republic). It is registered in the Global Index of Vegetation-Plot Databases (GIVD) with the code EU-00-026 and is accessible through the European Vegetation Archive (EVA) or by asking the Custodian. The CircumMed+Euro Pine Forest Database is an important resource for conducting different types of broad-scale studies in the fields of vegetation classification, plant invasion ecology, macroecology and biological conservation N/A
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- 2018
24. GrassVeg.DE – the new collaborative vegetation-plot database for herba-ceous vegetation types of Germany
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Dengler, Jürgen, Becker, Thomas, Conradi, Timo, Dolnik, Christian, Heindl-Tenhunen, Bärbel, Jensen, Kai, Kaufmann, Jana, Klotz, Marius, Kurzböck, Claudia, Lampe, Patrick, Langer, Nancy, Marquardt, Britta, Putfarken, Dorothee, Rahmlow, Melanie, Schuhmacher, Oliver, and Went, Julia
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2. Zero hunger ,0106 biological sciences ,Grassland ecology ,relevé ,15. Life on land ,010603 evolutionary biology ,01 natural sciences ,Turboveg ,Germany ,Ecoinformatics ,Vegetation-plot database ,sh85015976 Botany ,grassland ,577: Ökologie ,GrassVeg.DE ,collaborative ,Eurasian Dry Grassland Group (EDGG) ,010606 plant biology & botany ,European Vegetation Archive (EVA) - Abstract
Der Bericht stellt die neue kollaborative Vegetationsdatenbank GrassVeg.DE (EU-DE-020; http://bit.ly/2qgX208) vor, die Vegetationsaufnahmen von Grasländern und anderen nicht-aquatischen Offenlandhabitaten Deutschlands sammelt, um sie national und international für die vegetationsökologische Forschung zur Verfügung zu stellen. GrassVeg.DE trägt die Daten zum European Vegetation Archive (EVA) und künftig auch zur globalen Vegetationsdatenbank „sPlot“ bei. Datenlieferanten von GrassVeg.DE behalten volle Verfügungsgewalt über ihre Daten und werden Mitglied des GrassVeg.DE-Konsortiums. Dadurch profitieren sie durch Co-Autorenschaften und Zitate von ihren Beiträgen und erlangen zugleich die Möglichkeit, selbst Projekte zu beantragen, die GrassVeg.DE- oder EVA-Daten nutzen. Die schnell wachsende GrassVeg.DE-Datenbank umfasste im Juli 2017 3.181 Vegetationsaufnahmen aus acht deutschen Bundesländern. Perspektivisch kann GrassVeg.DE dazu beitragen, eine konsistente Neuklassifikation der Graslandvegetationstypen Deutschlands im Rahmen der Synopsis der Pflanzengesellschaften Deutschlands zu ermöglichen. Wir schließen den Beitrag mit einem Aufruf, eigene und aus der Literatur digitalisierte Vegetationsaufnahmen zu GrassVeg.DE beizutragen., This report presents the new collaborative vegetation-plot database GrassVeg.DE (EU-DE-020; http://bit.ly/2qgX208) which collects vegetation-plot records (relevés) from grasslands and other non-woodland and non-aquatic habitats from Germany to make them accessible for ecological research nationally and internationally. Data from GrassVeg.DE are provided to the European Vegetation Archive (EVA) and, in the future, also to the global database „sPlot“. Data providers of GrassVeg.DE retain full copyright of their data and becomd members of the GrassVeg.DE Consortium. Thereby, they profit from their contribution via co-authorships and citations as well as the option to propose own projects using the full GrassVeg.DE or EVA data. In July 2017, the fast-growing GrassVeg.DE database contained 3,181 vegetation plots, originating from eight federal states of Germany. In the future, GrassVeg.DE could facilitate the consistent re-classification of the grassland types within the series Synopsis der Pflanzengesellschaften Deutschlands. We conclude the report with a call to contribute own relevés and relevés digitised from the literature to GrassVeg.DE.
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- 2017
25. Vegetation database of Tatarstan
- Author
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Prokhorov V., Rogova T., and Kozhevnikova M.
- Subjects
Database ,Regional GIS ,Republic of Tatarstan ,Botanical information system ,Vegetation plot ,European Vegetation Archive (EVA) - Abstract
© 2017 Gebrüder Borntraeger, 70176 Stuttgart, Germany. The Republic of Tatarstan is situated between forest and steppe natural zones in the boreal mega-ecotone and has a high species and plant community diversity. The Vegetation Database of Tatarstan (GIVD Database ID: EU-RU-011) is based on phytosociological relevés, herbaria and floristic records. It includes over 8,000 plot records, almost half of them being georeferenced. The database is part of the European Vegetation Archive (EVA) and sPlot projects. In EVA it has a semi-restricted access mode.
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- 2017
26. GrassVeg.DE - the new collaborative vegetation-plot database for herbaceous vegetation types of Germany
- Author
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Dengler, Juergen, Becker, Thomas, Conradi, Timo, Dolnik, Christian, Heindl-Tenhunen, Baerbel, Jensen, Kai, Kaufmann, Jana, Klotz, Marius, Kurzboeck, Claudia, Lampe, Patrick, Langer, Nancy, Marquardt, Britta, Putfarken, Dorothee, Rahmlow, Melanie, Schuhmacherl, Oliver, and Went, Julia
- Subjects
European Vegetarian Archive (EVA) ,EUROPE ,releve ,DRY GRASSLANDS ,relevé ,vegetation-plot database ,Turboveg ,ecoinformatics ,CLASSIFICATION ,ddc:580 ,Germany ,grassland ,GrassVeg.DE ,collaborative ,Eurasian Dry Grassland Group (EDGG) ,European Vegetation Archive (EVA) - Abstract
Der Bericht stellt die neue kollaborative Vegetationsdatenbank GrassVeg.DE (EU-DE-020; http://bit.ly/2qgX208) vor, die Vegetationsaufnahmen von Grasländern und anderen nicht-aquatischen Offenlandhabitaten Deutschlands sammelt, um sie national und international für die vegetationsökologische Forschung zur Verfügung zu stellen. GrassVeg.DE trägt die Daten zum European Vegetation Archive (EVA) und künftig auch zur globalen Vegetationsdatenbank „sPlot“ bei. Datenlieferanten von GrassVeg.DE behalten volle Verfügungsgewalt über ihre Daten und werden Mitglied des Grass-Veg.DE-Konsortiums. Dadurch profitieren sie durch Co-Autorenschaften und Zitate von ihren Beiträgen und erlangen zugleich die Möglichkeit, selbst Projekte zu beantragen, die GrassVeg.DE- oder EVA-Daten nutzen. Die schnell wachsende GrassVeg.DE-Datenbank umfasste im Juli 2017 3.181 Vegetationsaufnahmen aus acht deutschen Bundesländern. Perspektivisch kann GrassVeg.DE dazu beitragen, eine konsistente Neuklassifikation der Graslandvegetationstypen Deutschlands im Rahmen der Synopsis der Pflanzengesellschaften Deutschlands zu ermöglichen. Wir schließen den Beitrag mit einem Aufruf, eigene und aus der Literatur digitalisierte Vegetationsaufnahmen zu GrassVeg.DE beizutragen This report presents the new collaborative vegetation-plot database GrassVeg.DE (EU-DE-020; http://bitly/2qgX208) which collects vegetation-plot records (releves) from grasslands and other non woodland and non-aquatic habitats from Germany to make them accessible for ecological research nationally and internationally. Data from GrassVeg.DE are provided to the European Vegetation Archive (EVA) and, in the future, also to the global database "sPlot". Data providers of GrassVeg.DE retain full copyright of their data and becomd members of the GrassVeg.DE Consortium. Thereby, they profit from their contribution via co-authorships and citations as well as the option to propose own projects using the full GrassVeg.DE or EVA data. In July 2017, the fast-growing GrassVeg.DE database contained 3,181 vegetation plots, originating from eight federal states of Germany. In the future, GrassVeg.DE could facilitate the consistent re-Classification of the grassland types within the series Synopsis der Pflanzengesellschaflen Deutschlands. We conclude the report with a call to contribute own releves and releves digitised from the literature to GrassVeg.DE.
- Published
- 2017
- Full Text
- View/download PDF
27. Gravel Bar Vegetation Database.
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Kalníková, Veronika and Kudrnovsky, Helmut
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PLANTS , *PLANT communities , *DATABASES , *VEGETATION surveys , *HABITATS , *COMPUTER network resources - Abstract
For the purpose of an ongoing research project dealing with the classification of European river gravel bar vegetation, we collected and digitized vegetation-plot data included in the Gravel Bar Vegetation Database (GIVD ID: EU-00-025, http: //www.givd.info/ID/EU-00-025). The database consists of vegetation plots obtained from the literature and from our own field sampling in the countries where this vegetation has not previously been studied or is less explored, especially in southeastern and northern Europe and the Caucasus. The database currently contains 1,738 vegetation plots from 18 countries representing different types and successional stages in the range of gravel bar vegetation from the initial herbaceous stands to scrub, mainly of the order Epilobietalia fleischeri (class Thlaspietea rotundifolii) and the class Salicetea purpureae. Geographical coordinates are available for all plots; accuracy of those derived from the literature depends on the precision of the location descriptions. European montane and submontane gravel-bed rivers with their typical vegetation belong to most endangered habitats; thus the database should complete the information about their distribution and their typical vegetation types. It also serves as data source for studies of vegetation structure and dynamics. The database is managed by the Vegetation Science Group at the Department of Botany and Zoology, Masaryk University, Brno. It has been integrated in the European Vegetation Archive (EVA). [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
28. Vegetation database of Tatarstan
- Author
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Prokhorov V., Rogova T., Kozhevnikova M., Prokhorov V., Rogova T., and Kozhevnikova M.
- Abstract
© 2017 Gebrüder Borntraeger, 70176 Stuttgart, Germany. The Republic of Tatarstan is situated between forest and steppe natural zones in the boreal mega-ecotone and has a high species and plant community diversity. The Vegetation Database of Tatarstan (GIVD Database ID: EU-RU-011) is based on phytosociological relevés, herbaria and floristic records. It includes over 8,000 plot records, almost half of them being georeferenced. The database is part of the European Vegetation Archive (EVA) and sPlot projects. In EVA it has a semi-restricted access mode.
29. Vegetation database of Tatarstan
- Author
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Prokhorov V., Rogova T., Kozhevnikova M., Prokhorov V., Rogova T., and Kozhevnikova M.
- Abstract
© 2017 Gebrüder Borntraeger, 70176 Stuttgart, Germany. The Republic of Tatarstan is situated between forest and steppe natural zones in the boreal mega-ecotone and has a high species and plant community diversity. The Vegetation Database of Tatarstan (GIVD Database ID: EU-RU-011) is based on phytosociological relevés, herbaria and floristic records. It includes over 8,000 plot records, almost half of them being georeferenced. The database is part of the European Vegetation Archive (EVA) and sPlot projects. In EVA it has a semi-restricted access mode.
30. EUNIS Habitat Classification : expert system, characteristic species combinations and distribution maps of European habitats
- Author
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Chytrý, Milan, Tichý, Lubomír, Hennekens, Stephan M., Knollová, Ilona, Janssen, John A. M., Rodwell, John S., Peterka, Tomáš, Marcenò, Corrado, Landucci, Flavia, Danihelka, Jiří, Hájek, Michal, Dengler, Jürgen, Novák, Pavel, Zukal, Dominik, Jiménez‐Alfaro, Borja, Mucina, Ladislav, Abdulhak, Sylvain, Aćić, Svetlana, Agrillo, Emiliano, Attorre, Fabio, Bergmeier, Erwin, Biurrun, Idoia, Boch, Steffen, Bölöni, János, Bonari, Gianmaria, Braslavskaya, Tatiana, Bruelheide, Helge, Campos, Juan Antonio, Čarni, Andraž, Casella, Laura, Ćuk, Mirjana, Ćušterevska, Renata, De Bie, Els, Delbosc, Pauline, Demina, Olga, Didukh, Yakiv, Dítě, Daniel, Dziuba, Tetiana, Ewald, Jörg, Gavilán, Rosario G., Gégout, Jean‐Claude, Giusso del Galdo, Gian Pietro, Golub, Valentin, Goncharova, Nadezhda, Goral, Friedemann, Graf, Ulrich, Indreica, Adrian, Isermann, Maike, Jandt, Ute, Jansen, Florian, Jansen, Jan, Jašková, Anni, Jiroušek, Martin, Kącki, Zygmunt, Kalníková, Veronika, Kavgacı, Ali, Khanina, Larisa, Yu. Korolyuk, Andrey, Kozhevnikova, Mariya, Kuzemko, Anna, Küzmič, Filip, Kuznetsov, Oleg L., Laiviņš, Māris, Lavrinenko, Igor, Lavrinenko, Olga, Lebedeva, Maria, Lososová, Zdeňka, Lysenko, Tatiana, Maciejewski, Lise, Mardari, Constantin, Marinšek, Aleksander, Napreenko, Maxim G., Onyshchenko, Viktor, Pérez‐Haase, Aaron, Pielech, Remigiusz, Prokhorov, Vadim, Rašomavičius, Valerijus, Rodríguez Rojo, Maria Pilar, Rūsiņa, Solvita, Schrautzer, Joachim, Šibík, Jozef, Šilc, Urban, Škvorc, Željko, Smagin, Viktor A., Stančić, Zvjezdana, Stanisci, Angela, Tikhonova, Elena, Tonteri, Tiina, Uogintas, Domas, Valachovič, Milan, Vassilev, Kiril, Vynokurov, Denys, Willner, Wolfgang, Yamalov, Sergey, Evans, Douglas, Palitzsch Lund, Mette, Spyropoulou, Rania, Tryfon, Eleni, and Schaminée, Joop H. J.
- Subjects
Coastal habitat ,Distribution map ,15. Life on land ,Dune vegetation ,Grassland ,Habitat classification ,Vegetation plot ,Shrubland ,Diagnostic species ,Man‐made habitat ,Vegetation database ,Wetland ,14. Life underwater ,Forest ,577: Ökologie ,European Nature Information System (EUNIS) ,Expert system ,European Vegetation Archive (EVA) - Abstract
Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation-plot records to the habitats of the EUNIS system, use it to classify a European vegetation-plot database, and compile statistically-derived characteristic species combinations and distribution maps for these habitats. Location: Europe. Methods: We developed the classification expert system EUNIS-ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set-theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species-to-habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat. Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man-made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination. Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNISESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment.
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