62 results on '"Eun Joo Seo"'
Search Results
2. Video-based Bio-Signal Measurements for a Mobile Healthcare System.
- Author
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Hyo-Haeng Lee, Eun-Joo Seo, Ji-Su Yang, Sang-Min Park, and Kwang-Seok Hong
- Published
- 2016
- Full Text
- View/download PDF
3. Design and Implementation of Emotion Patterns Based on Speech Recognition Analysis.
- Author
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Ki-Young Lee, Eun-Joo Seo, Myung-Jae Lim, Sun-Jin Oh, and Gyoo-Seok Choi
- Published
- 2012
- Full Text
- View/download PDF
4. A Study on the Relationship Quality of Medical Services
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Yong Chul Hwang and Eun-joo Seo
- Subjects
Medical services ,Customer orientation ,media_common.quotation_subject ,Quality (business) ,Business ,Marketing ,media_common - Published
- 2021
5. Birth of the Modern Woman in Africa: Ngugi wa Thiong’o’s Devil on the Cross
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Eun Joo Seo
- Published
- 2019
6. The Relationships between Stress and ADL in Elderly Living Alone
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Nam-Hyun Cha and Eun-Joo Seo
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Gerontology ,Stress management ,Activities of daily living ,030214 geriatrics ,Descriptive statistics ,business.industry ,Physical activity ,010402 general chemistry ,medicine.disease ,01 natural sciences ,humanities ,0104 chemical sciences ,Substance abuse ,03 medical and health sciences ,0302 clinical medicine ,Stress (linguistics) ,Health care ,Medicine ,Analysis of variance ,business ,human activities - Abstract
This study was to identify the relationships between activities of daily living(ADL) and stress by health characteristics in elderly living alone. A total of 260 subjects were selected through convenient sampling. Data were collected with a self-reported questionnaire from October 20 to November 20, 2014. Data were analyzed using descriptive statistics, t-test, ANOVA, Pearson Correlation Coefficients. Differences in ADL and stress according to health characteristics were as follows. ADL were significantly different according to problem of dietary habits. drinking, unsuitable health care, management groups. Stress were significantly different according to stress and availability and drug abuse. There was a negative correlation between ADL and stress. The findings of this study may be useful in understanding the health status of elderly living alone and developing more specific programs about ADL and stress control. Getting older, with the change in weight and chronic diseases, as the elderly living alone are indisposed with ADL, the applicatiom of physical activity programs and a stress management strategy is required.
- Published
- 2016
7. Relationships among Nursing Professional Values, Bioethics and Death Ethic Perception in Nursing Students
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Nam-Hyun Cha and Eun-Joo Seo
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030506 rehabilitation ,03 medical and health sciences ,030504 nursing ,Nursing ,business.industry ,Perception ,media_common.quotation_subject ,Medicine ,Nurse education ,Bioethics ,0305 other medical science ,business ,media_common - Published
- 2016
8. Facile Fabrication of a Two-Dimensional TMD/Si Heterojunction Photodiode by Atmospheric-Pressure Plasma-Enhanced Chemical Vapor Deposition
- Author
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Eun Joo Seo, Soyeong Kwon, Jae Hyeon Nam, Dong-Wook Kim, Se-Hun Kwon, Yonghun Kim, Hye Yeon Jang, Jung Dae Kwon, and Byung Jin Cho
- Subjects
Photocurrent ,Fabrication ,Materials science ,business.industry ,Heterojunction ,02 engineering and technology ,Substrate (electronics) ,Chemical vapor deposition ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Photodiode ,law.invention ,Semiconductor ,law ,Optoelectronics ,General Materials Science ,Laser power scaling ,0210 nano-technology ,business - Abstract
A growth technique to directly prepare two-dimensional (2D) materials onto conventional semiconductor substrates, enabling low-temperature, high-throughput, and large-area capability, is needed to realize competitive 2D transition-metal dichalcogenide (TMD)/three-dimensional (3D) semiconductor heterojunction devices. Therefore, we herein successfully developed an atmospheric-pressure plasma-enhanced chemical vapor deposition (AP-PECVD) technique, which could grow MoS2 and WS2 multilayers directly onto PET flexible substrate as well as 4-in. Si substrates at temperatures of
- Published
- 2018
9. The Interferon-Induced Gene ISG15 Blocks Retrovirus Release from Cells Late in the Budding Process
- Author
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Zhizhou Kuang, Andrew Pincetic, Eun Joo Seo, and Jonathan Leis
- Subjects
Vacuolar Proton-Translocating ATPases ,Immunology ,macromolecular substances ,Microbiology ,ESCRT ,Cell Line ,VP40 ,Ubiquitin ,Virology ,Humans ,TSG101 ,Ubiquitins ,Virus Release ,Adenosine Triphosphatases ,Endosomal Sorting Complexes Required for Transport ,biology ,Fibroblasts ,biology.organism_classification ,ISG15 ,Molecular biology ,Virus-Cell Interactions ,Ubiquitin ligase ,Avian sarcoma leukosis virus ,Avian Sarcoma Viruses ,Insect Science ,HIV-1 ,biology.protein ,ATPases Associated with Diverse Cellular Activities ,Cytokines ,Interferons - Abstract
The release of retroviruses from cells requires ubiquitination of Gag and recruitment of cellular proteins involved in endosome sorting, including the ESCRT-III proteins and the Vps4 ATPase. In response to infection, cells have evolved an interferon-induced mechanism to block virus replication through expression of the interferon-stimulated gene 15 (ISG15), a dimer homologue of ubiquitin, which interferes with ubiquitin pathways in cells. Previously, it has been reported that ISG15 expression inhibited the E3 ubiquitin ligase, Nedd4, and prevented association of the ESCRT-I protein Tsg101 with human immunodeficiency virus type 1 (HIV-1) Gag. The budding of avian sarcoma leukosis virus and HIV-1 Gag virus-like particles containing L-domain mutations can be rescued by fusion to ESCRT proteins, which cause entry into the budding pathway beyond these early steps. The release of these fusions from cells was susceptible to inhibition by ISG15, indicating that there was a block late in the budding process. We now demonstrate that the Vps4 protein does not associate with the avian sarcoma leukosis virus or the HIV-1 budding complexes when ISG15 is expressed. This is caused by a loss in interaction between Vps4 with its coactivator protein LIP5 needed to promote the formation of the ESCRT-III-Vps4 double-hexamer complex required for membrane scission and virus release. The inability of LIP5 to interact with Vps4 is the probable result of ISG15 conjugation to the ESCRT-III protein, CHMP5, which regulates the availability of LIP5. Thus, there appear to be multiple levels of ISG15-induced inhibition acting at different stages of the virus release process.
- Published
- 2010
10. DNA Methylation Patterns of Ulcer-Healing Genes Associated with the Normal Gastric Mucosa of Gastric Cancers
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Mun-Gan Rhyu, Sang Wook Choi, Seok Jin Kang, Jung Hwan Oh, S.I. Kim, Seung-Jin Hong, Eun-Joo Seo, Yu-Chae Jung, Young-Ho Kim, and Moo-Il Kang
- Subjects
Non-Invasive Cancer ,Male ,medicine.medical_specialty ,Gastroenterology ,CDH1 ,Antigens, CD ,Stomach Neoplasms ,Internal medicine ,Neoplasms ,medicine ,Gastric mucosa ,Humans ,Neoplasm Invasiveness ,Stomach Ulcer ,education ,Growth Substances ,Ulcer ,education.field_of_study ,Wound Healing ,biology ,Gastroenterology & Hepatology ,Stomach ,Tumor Suppressor Proteins ,Trefoil factor 2 ,Cancer ,General Medicine ,Methylation ,DNA Methylation ,Middle Aged ,medicine.disease ,Cadherins ,Gene Expression Regulation, Neoplastic ,PPAR gamma ,medicine.anatomical_structure ,CpG site ,Gastric Mucosa ,DNA methylation ,biology.protein ,Original Article ,CpG Islands ,Female ,Trefoil Factor-1 ,Trefoil Factor-2 ,Peptides ,Biomarkers - Abstract
Recent evidence suggests that gastric mucosal injury induces adaptive changes in DNA methylation. In this study, the methylation status of the key tissue-specific genes in normal gastric mucosa of healthy individuals and cancer patients was eval- uated. The methylation-variable sites of 14 genes, including ulcer-healing genes (TFF1, TFF2, CDH1, and PPARG), were chosen from the CpG-island margins or non-island CpGs near the transcription start sites. The healthy individuals as well as the normal gastric mucosa of 23 ulcer, 21 non-invasive cancer, and 53 cancer patients were examined by semiquantitative methylation-specific polymerase chain reaction (PCR) analysis. The ulcer-healing genes were concurrently methylated with other genes depending on the presence or absence of CpG-islands in the normal mucosa of healthy individuals. Both the TFF2 and PPARG genes were frequently undermethylated in ulcer patients. The over- or intermediate-methylated TFF2 and undermethylated PPARG genes was more common in stage-1 cancer patients (71%) than in healthy individuals (10%; odds ratio (OR), 21.9) and non-invasive cancer patients (21%; OR, 8.9). The TFF2-PPARG methylation pattern of cancer patients was stronger in the older-age group (≥55 yr; OR, 43.6). These results suggest that the combined methylation pattern of ulcer-healing genes serves as a sensitive mark- er for predicting cancer-prone gastric mucosa.
- Published
- 2010
11. A Network of Hydrophobic Residues Impeding Helix αC Rotation Maintains Latency of Kinase Gcn2, Which Phosphorylates the α Subunit of Translation Initiation Factor 2
- Author
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Madhusudan Dey, Andrés Gárriz, Hongfang Qiu, Eun-Joo Seo, Alan G. Hinnebusch, and Thomas E. Dever
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Models, Molecular ,Saccharomyces cerevisiae Proteins ,Eukaryotic Initiation Factor-2 ,Saccharomyces cerevisiae ,Protein Serine-Threonine Kinases ,Biology ,Protein Structure, Secondary ,Eukaryotic translation ,Protein structure ,RNA, Transfer ,Phosphorylation ,Molecular Biology ,G alpha subunit ,Autophosphorylation ,Active site ,Articles ,Cell Biology ,TRNA binding ,Enzyme Activation ,Protein Subunits ,Amino Acid Substitution ,Protein kinase domain ,Biochemistry ,Mutation ,biology.protein ,Biophysics ,Protein Multimerization ,Hydrophobic and Hydrophilic Interactions - Abstract
Kinase Gcn2 is activated by amino acid starvation and downregulates translation initiation by phosphorylating the alpha subunit of translation initiation factor 2 (eIF2alpha). The Gcn2 kinase domain (KD) is inert and must be activated by tRNA binding to the adjacent regulatory domain. Previous work indicated that Saccharomyces cerevisiae Gcn2 latency results from inflexibility of the hinge connecting the N and C lobes and a partially obstructed ATP-binding site in the KD. Here, we provide strong evidence that a network of hydrophobic interactions centered on Leu-856 also promotes latency by constraining helix alphaC rotation in the KD in a manner relieved during amino acid starvation by tRNA binding and autophosphorylation of Thr-882 in the activation loop. Thus, we show that mutationally disrupting the hydrophobic network in various ways constitutively activates eIF2alpha phosphorylation in vivo and bypasses the requirement for a key tRNA binding motif (m2) and Thr-882 in Gcn2. In particular, replacing Leu-856 with any nonhydrophobic residue activates Gcn2, while substitutions with various hydrophobic residues maintain kinase latency. We further provide strong evidence that parallel, back-to-back dimerization of the KD is a step on the Gcn2 activation pathway promoted by tRNA binding and autophosphorylation. Remarkably, mutations that disrupt the L856 hydrophobic network or enhance hinge flexibility eliminate the need for the conserved salt bridge at the parallel dimer interface, implying that KD dimerization facilitates the reorientation of alphaC and remodeling of the active site for enhanced ATP binding and catalysis. We propose that hinge remodeling, parallel dimerization, and reorientation of alphaC are mutually reinforcing conformational transitions stimulated by tRNA binding and secured by the ensuing autophosphorylation of T882 for stable kinase activation.
- Published
- 2009
12. Rapid evolution of protein kinase PKR alters sensitivity to viral inhibitors
- Author
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Eun Joo Seo, James S. Gibbs, Katharina Dittmar, Stefan Rothenburg, and Thomas E. Dever
- Subjects
Models, Molecular ,Protein Conformation ,viruses ,Eukaryotic Initiation Factor-2 ,Medical and Health Sciences ,environment and public health ,Substrate Specificity ,eIF-2 Kinase ,Models ,Structural Biology ,Viral ,Phosphorylation ,Phylogeny ,eIF2 ,virus diseases ,Biological Sciences ,Cell biology ,Infectious Diseases ,RNA, Viral ,Infection ,Evolution ,Molecular Sequence Data ,Biophysics ,Antiviral protein ,Protein degradation ,Biology ,Article ,Evolution, Molecular ,Viral Proteins ,Rare Diseases ,Eukaryotic translation ,Animals ,Humans ,Amino Acid Sequence ,Protein kinase A ,Molecular Biology ,EIF-2 kinase ,Binding Sites ,Prevention ,Molecular ,DNA ,biochemical phenomena, metabolism, and nutrition ,Protein kinase R ,enzymes and coenzymes (carbohydrates) ,Emerging Infectious Diseases ,Viral replication ,Chemical Sciences ,DNA, Viral ,Mutation ,biology.protein ,RNA ,Developmental Biology - Abstract
Protein kinase PKR (also known as EIF2AK2) is activated during viral infection and phosphorylates the alpha subunit of eukaryotic translation initiation factor 2 (eIF2), leading to inhibition of translation and viral replication. We report fast evolution of the PKR kinase domain in vertebrates, coupled with positive selection of specific sites. Substitution of positively selected residues in human PKR with residues found in related species altered sensitivity to PKR inhibitors from different poxviruses. Species-specific differences in sensitivity to poxviral pseudosubstrate inhibitors were identified between human and mouse PKR, and these differences were traced to positively selected residues near the eIF2alpha binding site. Our findings indicate how an antiviral protein evolved to evade viral inhibition while maintaining its primary function. Moreover, the identified species-specific differences in the susceptibility to viral inhibitors have important implications for studying human infections in nonhuman model systems.
- Published
- 2008
13. Protein kinase PKR mutants resistant to the poxvirus pseudosubstrate K3L protein
- Author
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Furong Liu, Makiko Kawagishi-Kobayashi, Thomas E. Dever, Arvin C. Dar, Eun Joo Seo, Tekly L. Ung, Chune Cao, and Frank Sicheri
- Subjects
Models, Molecular ,Protein Conformation ,viruses ,Eukaryotic Initiation Factor-2 ,Saccharomyces cerevisiae ,Biology ,medicine.disease_cause ,environment and public health ,Substrate Specificity ,Viral Proteins ,eIF-2 Kinase ,Protein biosynthesis ,medicine ,Phosphorylation ,Binding site ,Smallpox virus ,Mutation ,EIF-2 kinase ,Binding Sites ,Multidisciplinary ,Poxviridae ,virus diseases ,Biological Sciences ,biochemical phenomena, metabolism, and nutrition ,Molecular biology ,Protein kinase R ,enzymes and coenzymes (carbohydrates) ,Protein kinase domain ,biology.protein - Abstract
As part of the mammalian cell innate immune response, the double-stranded RNA activated protein kinase PKR phosphorylates the translation initiation factor eIF2alpha to inhibit protein synthesis and thus block viral replication. Poxviruses including vaccinia and smallpox viruses express PKR inhibitors such as the vaccinia virus K3L protein that resembles the N-terminal substrate-targeting domain of eIF2alpha. Whereas high-level expression of human PKR was toxic in yeast, this growth inhibition was suppressed by coexpression of the K3L protein. We used this yeast assay to screen for PKR mutants that are resistant to K3L inhibition, and we identified 12 mutations mapping to the C-terminal lobe of the PKR kinase domain. The PKR mutations specifically conferred resistance to the K3L protein both in yeast and in vitro. Consistently, the PKR-D486V mutation led to nearly a 15-fold decrease in K3L binding affinity yet did not impair eIF2alpha phosphorylation. Our results support the identification of the eIF2alpha-binding site on an extensive face of the C-terminal lobe of the kinase domain, and they indicate that subtle changes to the PKR kinase domain can drastically impact pseudosubstrate inhibition while leaving substrate phosphorylation intact. We propose that these paradoxical effects of the PKR mutations on pseudosubstrate vs. substrate interactions reflect differences between the rigid K3L protein and the plastic nature of eIF2alpha around the Ser-51 phosphorylation site.
- Published
- 2008
14. Feature Extraction Method for Predicting Depression by Frequency Domain Analysis
- Author
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Kwang-Seok Hong and Eun-Joo Seo
- Subjects
Correlation ,business.industry ,Feature vector ,Frequency domain ,Feature extraction ,Range (statistics) ,Pattern recognition ,Artificial intelligence ,business ,Mathematics ,Intensity (physics) ,Random forest ,Glottal flow - Abstract
In this paper, we propose a feature extraction method, which subdivides feature vectors into three frequency regions of 300-1000Hz, 1000-2000Hz, and 2000-3000Hz. The range and mean of intensity are extracted for each frequency region. By so doing, we can compensate the defect of increasing the intensity value, when a person intentionally increases his or her vocalization. Previous studies extracted the slope and correlation of the glottal flow spectrum from the 300-3000Hz region. But, we extract the slope and correlation from each separated frequency region. The overall experimental results show 92.85% for men, and 92.08% for women. The proposed method enhances the respective classification accuracy by 6.73% for men, and 8.09% for women. Keywords-depression, speech Analysis, Random Forest, frequency Domain
- Published
- 2015
15. Myocardial infarction in a young female with reninoma induced hypertension and myocardial bridging
- Author
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Eun Joo Seo, Su Yeon Cho, Eun Ju Cho, Bae Young Lee, and Kyung Sup Song
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Adult ,medicine.medical_specialty ,Myocardial bridging ,Myocardial Bridging ,Myocardial Infarction ,Secondary hypertension ,Computed tomography ,Coronary Angiography ,Nephrectomy ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,cardiovascular diseases ,Myocardial infarction ,Young female ,Cardiac imaging ,medicine.diagnostic_test ,business.industry ,Anticoagulants ,Electrocardiography in myocardial infarction ,medicine.disease ,Juxtaglomerular Apparatus ,Kidney Neoplasms ,Treatment Outcome ,Hypertension ,cardiovascular system ,Cardiology ,Female ,Radiology ,Tomography, X-Ray Computed ,Cardiology and Cardiovascular Medicine ,business - Abstract
We present a case of myocardial infarction in a young female with reninoma induced hypertension and myocardial bridging. Reninoma is a rare and curable cause of secondary hypertension. Currently developed multi-detector computed tomography (MDCT) has permitted better evaluation of myocardial infarction and myocardial bridging. Myocardial infarction associated with reninoma and myocardial bridging has not been reported, and we report this interesting case.
- Published
- 2006
16. Prevalence of human papillomavirus DNA in various histological subtypes of cervical adenocarcinoma: a population-based study
- Author
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Hee J An, Dong Won Kim, Sung R Hong, Hye Kyoung Yoon, Sun H Sung, Geung H Ahn, In S Kim, Kyu Rae Kim, Kwang Sun Suh, Jin H Sohn, Hyun I Cho, In A Park, Ji Y Han, Eun Deok Chang, Moon Hyang Park, and Eun Joo Seo
- Subjects
Adult ,Oncology ,medicine.medical_specialty ,Pathology ,Genotype ,Population ,Uterine Cervical Neoplasms ,Adenocarcinoma ,Pathology and Forensic Medicine ,Internal medicine ,Prevalence ,medicine ,Human papillomavirus DNA ,Humans ,education ,Papillomaviridae ,Neoplasm Staging ,education.field_of_study ,Korea ,Cervical adenocarcinoma ,business.industry ,Papillomavirus Infections ,HPV infection ,virus diseases ,Middle Aged ,medicine.disease ,female genital diseases and pregnancy complications ,Population based study ,DNA, Viral ,Female ,Who classification ,business - Abstract
The role of human papilloma virus (HPV) infection in the development of cervical carcinoma is well established, however, the prevalence of HPV DNA in cervical adenocarcinoma varies from study to study. It appears to be caused by a number of factors, one of which is that cervical adenocarcinomas comprise a heterogeneous group of multiple subtypes. To clarify the impact of HPV infection on the development of cervical adenocarcinoma with diverse histological subtypes, we performed a population-based study in Korean women from 15 different institutes for the status of HPV infection in adenocarcinoma of uterine cervix. A total of 432 cervical adenocarcinomas from 1997 to 2001 were reviewed and classified according to the modified WHO classification. For 135 cases, HPV typing was performed with HPV DNA chip (82 cases) and PCR HPV typing (53 cases), using formalin-fixed, paraffin-embedded archival tissue. The overall prevalence of HPV infection in cervical adenocarcinoma was 90%. The infection of HPV 16 and/or HPV 18 accounted for 78% of HPV-positive adenocarcinomas. Multiple HPV types were found in 13% of the cases. The HPV DNA was rarely detected in minimal deviation adenocarcinoma. Interestingly, HPV 16 was a predominant type in endometrioid and villoglandular types, whereas HPV 16 and HPV 18 were detected with equal prevalence in other subtypes. In conclusion, HPV infection, mostly HPV 16 and HPV 18, is highly associated with most of the cervical adenocarcinomas, whereas endometrioid and villoglandular type have a different pattern of HPV infection status. Minimal deviation adenocarcinoma does not seem to be related with HPV infection.
- Published
- 2005
17. Low Frequency of β-Catenin Gene Mutations in Pilomatricoma
- Author
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Jung-Soo Kim, Jin-Wou Kim, Kyung Ho Lee, Eun-Joo Seo, Hyun-Jeong Lee, and Seog-Jun Ha
- Subjects
Adult ,Male ,Genes, APC ,Skin Neoplasms ,Adolescent ,Adenomatous polyposis coli ,DNA Mutational Analysis ,Loss of Heterozygosity ,Dermatology ,Gene mutation ,medicine.disease_cause ,Polymerase Chain Reaction ,law.invention ,Loss of heterozygosity ,Exon ,law ,medicine ,Humans ,Child ,Gene ,beta Catenin ,Polymerase chain reaction ,DNA Primers ,Mutation ,biology ,Infant ,DNA, Neoplasm ,Exons ,General Medicine ,Middle Aged ,Cadherins ,Pilomatrixoma ,Cytoskeletal Proteins ,Catenin ,Trans-Activators ,biology.protein ,Cancer research ,Female ,Hair Diseases - Abstract
We investigated beta-catenin and adenomatous polyposis coli (APC) gene abnormalities in human pilomatricoma, in which a high incidence of beta-catenin gene mutations has been reported. Nucleated tumour cells were microdissected from 20 paraffin-embedded pilomatricomas. Exon 3 of the beta-catenin gene was amplified using polymerase chain reaction and sequencing analysis was performed. Immunostaining for beta-catenin and lymphoid-enhancer factor-1 was performed using the avidin-biotin-peroxidase method. Dinucleotide repeat markers D5S409 and D5S299 were used for polymerase chain reaction-based microsatellite analysis of the APC gene. The mutation cluster region of the APC gene was amplified using polymerase chain reaction and sequenced. Sequencing analysis revealed beta-catenin gene mutations in 30%. All studied samples showed nuclear lymphoid-enhancer factor-1 and cytoplasmic/nuclear beta-catenin expression. Loss of heterozygosity was observed in the APC gene, but no mutations in the mutation cluster region were found in seven tumours without beta-catenin mutations. The frequency of beta-catenin gene mutations was remarkably low, thus suggesting (i) the presence of mutations in other than exon 3 of the beta-catenin gene, (ii) a possible role of APC gene abnormalities, or (iii) involvement of other components of the Wingless-type MMTV integration site family pathway.
- Published
- 2002
18. Concerted Regulation of Inhibitory Activity of α1-Antitrypsin by the Native Strain Distributed throughout the Molecule
- Author
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Myeong Hee Yu, Cheolju Lee, and Eun Joo Seo
- Subjects
Models, Molecular ,Protein Denaturation ,Protein Folding ,Protein Conformation ,Globular protein ,Stereochemistry ,medicine.medical_treatment ,Serpin ,Inhibitory postsynaptic potential ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Protein Structure, Secondary ,Residue (chemistry) ,medicine ,Molecule ,Molecular Biology ,Guanidine ,chemistry.chemical_classification ,Protease ,Dose-Response Relationship, Drug ,Strain (chemistry) ,Chemistry ,Lysine ,Cell Biology ,Recombinant Proteins ,Kinetics ,Models, Chemical ,alpha 1-Antitrypsin ,Mutation ,Biophysics ,Thermodynamics ,Function (biology) - Abstract
The native forms of common globular proteins are in their most stable state but the native forms of plasma serpins (serine protease inhibitors) show high energy state interactions. The high energy state strain of alpha(1)-antitrypsin, a prototype serpin, is distributed throughout the whole molecule, but the strain that regulates the function directly appears to be localized in the region where the reactive site loop is inserted during complex formation with a target protease. To examine the functional role of the strain at other regions of alpha(1)-antitrypsin, we increased the stability of the molecule greatly via combining various stabilizing single amino acid substitutions that did not affect the activity individually. The results showed that a substantial increase of stability, over 13 kcal mol(-1), affected the inhibitory activity with a correlation of 11% activity loss per kcal mol(-1). Addition of an activity affecting single residue substitution in the loop insertion region to these very stable substitutions caused a further activity decrease. The results suggest that the native strain of alpha(1)-antitrypsin distributed throughout the molecule regulates the inhibitory function in a concerted manner.
- Published
- 2002
19. Angiosarcoma mimicking cutis verticis gyrata
- Author
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Jae-Hyung Kim, Eun-Joo Seo, Chan Kum Park, Hyeonmi Kang, Soo-Hwan Kang, K. H. Choi, and Byung-Sik Cho
- Subjects
Pathology ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,Dermatology ,medicine.disease ,Scalp Dermatosis ,Hemangiosarcoma ,medicine.anatomical_structure ,Scalp ,Medicine ,Cutis verticis gyrata ,Angiosarcoma ,Differential diagnosis ,business - Published
- 2011
20. Variola virus E3L Zα domain, but not its Z-DNA binding activity, is required for PKR inhibition
- Author
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Meghna Thakur, Eun Joo Seo, and Thomas E. Dever
- Subjects
viruses ,Molecular Sequence Data ,RNA-binding protein ,Plasma protein binding ,Saccharomyces cerevisiae ,environment and public health ,Viral Proteins ,eIF-2 Kinase ,DNA, Z-Form ,Humans ,Point Mutation ,Amino Acid Sequence ,Kinase activity ,Molecular Biology ,RNA, Double-Stranded ,EIF-2 kinase ,eIF2 ,biology ,Kinase ,virus diseases ,RNA-Binding Proteins ,Translation (biology) ,Articles ,Variola virus ,biochemical phenomena, metabolism, and nutrition ,Molecular biology ,Protein kinase R ,Immunity, Innate ,Cell biology ,Protein Structure, Tertiary ,enzymes and coenzymes (carbohydrates) ,Amino Acid Substitution ,Host-Pathogen Interactions ,biology.protein ,Mutagenesis, Site-Directed ,HeLa Cells ,Protein Binding - Abstract
Responding to viral infection, the interferon-induced, double-stranded RNA (dsRNA)–activated protein kinase PKR phosphorylates translation initiation factor eIF2α to inhibit cellular and viral protein synthesis. To overcome this host defense mechanism, many poxviruses express the protein E3L, containing an N-terminal Z-DNA binding (Zα) domain and a C-terminal dsRNA-binding domain (dsRBD). While E3L is thought to inhibit PKR activation by sequestering dsRNA activators and by directly binding the kinase, the role of the Zα domain in PKR inhibition remains unclear. Here, we show that the E3L Zα domain is required to suppress the growth-inhibitory properties associated with expression of human PKR in yeast, to inhibit PKR kinase activity in vitro, and to reverse the inhibitory effects of PKR on reporter gene expression in mammalian cells treated with dsRNA. Whereas previous studies revealed that the Z-DNA binding activity of E3L is critical for viral pathogenesis, we identified point mutations in E3L that functionally uncouple Z-DNA binding and PKR inhibition. Thus, our studies reveal a molecular distinction between the nucleic acid binding and PKR inhibitory functions of the E3L Zα domain, and they support the notion that E3L contributes to viral pathogenesis by targeting PKR and other components of the cellular anti-viral defense pathway.
- Published
- 2014
21. A 2.1 Å resolution structure of an uncleaved α1-antitrypsin shows variability of the reactive center and other loops11Edited by R. Huber
- Author
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Seong Eon Ryu, Myeong Hee Yu, Seung Jun Kim, Eun Joo Seo, and Joo Rang Woo
- Subjects
Serine protease ,Proteases ,Protease ,biology ,Multiple isomorphous replacement ,Chemistry ,Stereochemistry ,medicine.medical_treatment ,Plasma protein binding ,Serpin ,Protein structure ,Structural Biology ,biology.protein ,medicine ,Biophysics ,Molecular Biology ,Reactive center - Abstract
Serpin (serine protease inhibitor) proteins are involved in diverse physiological processes including inflammation, coagulation, matrix remodeling, and cell differentiation. Deficiency of normal serpin functions leads to various hereditary diseases. Besides their clinical importance, serpin proteins draw much attention due to the large conformational changes that occur upon interaction with proteases. We present here the crystal structure of an uncleaved alpha(1)-antitrypsin determined by the multiple isomorphous replacement method and refined to 2.1 A resolution. The structure, which is the first active serpin structure based on experimental phases, reveals novel conformations in the flexible loops, including the proximal hinge region of the reactive center loop and the surface cavity region in the central beta-sheet, sheet A. The determined loop conformation explains the results of recent mutagenesis studies and provides detailed insights into the protease inhibition mechanism. The high-resolution structure of active alpha(1)-antitrypsin also provides evidence for the existence of localized van-der-Waals strain in the central hydrophobic core.
- Published
- 2001
22. p53 gene mutations in Bowen's disease in Koreans: clustering in exon 5 and multiple mutations
- Author
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Eun-Joo Seo, Kee-Young Roh, Jin-Wou Kim, Kyung Sook Park, J. Lee, Seog-Jun Ha, Won-Sang Park, Jung-Soo Kim, and Hyun-Jeong Lee
- Subjects
Adult ,Male ,Cancer Research ,Ultraviolet Rays ,Loss of Heterozygosity ,Bowen's Disease ,Skin Pigmentation ,Gene mutation ,Biology ,law.invention ,Loss of heterozygosity ,Exon ,law ,medicine ,Humans ,Missense mutation ,Genetic Predisposition to Disease ,Microdissection ,Polymerase chain reaction ,Aged ,Aged, 80 and over ,Genetics ,Bowen's disease ,Korea ,Single-strand conformation polymorphism ,Exons ,Middle Aged ,medicine.disease ,Immunohistochemistry ,Molecular biology ,Oncology ,Mutation ,Female ,Tumor Suppressor Protein p53 - Abstract
We analyzed the p53 protein expression and gene mutations to evaluate the role of ultraviolet radiation or other carcinogens, and possible racial differences in 17 samples from 12 Korean patients with Bowen's disease. A simple microdissection technique was used to collect the tumor cells selectively. p53 protein expression was found in eight of 17 (47%) samples. Abnormalities in polymerase chain reaction (PCR)–single-strand conformation polymorphism (SSCP) analysis were observed in 16 (94%) samples. A total of 14 missense mutations were detected in eight (47%) samples; 11 were clustered in exon 5 and the remaining three were located in exon 8. UV-like mutations were seen in five of 14 (36%) mutations, but no CC to TT transitions, UV-fingerprint mutations were observed. Multiple mutations were present in two cases and double mutation in a single case. Each lesion in multiple Bowen's disease showed different mutations and was suggested to be of different clonal origins. TP53-loss of heterozygosity (LOH) was detected in four out of 15 (27%) informative samples. Clustering of mutations in exon 5 suggests the role of another carcinogen in Koreans or Asians other than the UVR. Microdissection would increase the detection rate of the p53 gene mutations and LOH not only in skin cancer but also in precancerous lesions.
- Published
- 2000
23. Nasal Angiocentric Lymphoma With Hemophagocytic Syndrome
- Author
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Jung Soo Kim, Eun Joo Seo, Ki Ouk Min, Kyung Shik Lee, Ji Youn Han, Jin Hyung Kang, Hoon Kyo Kim, Hi Jeong Kwon, and Young Seon Hong
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Angiocentric lymphoma ,Epstein-Barr Virus Infections ,Histiocytosis, Non-Langerhans-Cell ,Lymphoma ,Nose Neoplasms ,CHOP ,medicine.disease_cause ,Nose neoplasm ,hemic and lymphatic diseases ,Medicine ,Epstein-Barr virus ,Humans ,Clinical significance ,Epstein–Barr virus infection ,business.industry ,Combination chemotherapy ,Syndrome ,Middle Aged ,medicine.disease ,Epstein–Barr virus ,Original Article ,Female ,business ,Complication ,Hemophagocytic syndrome - Abstract
OBJECTIVES Hemophagocytic syndrome (HS) is a fatal complication of nasal angiocentric lymphoma (AL) and difficult to distinguish from malignant histiocyosis. Epstein-Barr virus (EBV)-associated HS is frequently observed in lymphoma of T-cell lineage and EBV is highly associated with nasal AL. Clinicopathologic features of 10 nasal ALs with HS were reviewed to determine the clinical significance and the pathogenetic association with EBV. METHODS Ten patients of HS were identified from a retrospective analysis of 42 nasal ALs diagnosed from 1987 to 1996. Immunohistochemical study and in situ hybridization were performed on the paraffin-embedded tumor specimens obtained from 10 patients. Serologic study of EBV-Ab was performed in 3 available patients. RESULTS Five patients had HS as initial manifestation, 3 at the time of relapse and 2 during the clinical remission of AL. Four patients were treated by combination chemotherapy (CHOP) and others had only supportive care. The median survival of all patients with HS was 4.1 months (range 2 days-36.5 months) and all had fatal outcome regardless of the treatment-modality. All cases were positive for UCHL1 (CD45RO) and EBV by EBER in situ hybridization. The data of serologic tests indicated the active EBV infection. CONCLUSIONS HS is a fatal complication of nasal AL and has a high association with EBV. Reactivation of EBV may contribute to HS and further investigation of predictive factors and effective treatment of HS should be pursued in the future.
- Published
- 1999
24. Evidence of genetic progression in human gastric carcinomas with microsatellite instability
- Author
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Sang Wook Choi, Eun-Joo Seo, Kyo-Young Lee, Sang-Won Park, Yeun-Jun Chung, Ji-Min Song, and Mun-Gan Rhyu
- Subjects
Adult ,Genetic Markers ,Male ,Cancer Research ,Time Factors ,Loss of Heterozygosity ,medicine.disease_cause ,Frameshift mutation ,Loss of heterozygosity ,Insulin-Like Growth Factor II ,Stomach Neoplasms ,Transforming Growth Factor beta ,Proto-Oncogene Proteins ,Genetics ,medicine ,Humans ,Frameshift Mutation ,Molecular Biology ,Aged ,bcl-2-Associated X Protein ,Mutation ,biology ,Carcinoma ,Microsatellite instability ,DNA, Neoplasm ,Transforming growth factor beta ,Genes, p53 ,medicine.disease ,DNA-Binding Proteins ,Proto-Oncogene Proteins c-bcl-2 ,Tumor progression ,MutS Homolog 3 Protein ,Cancer research ,biology.protein ,Female ,DNA mismatch repair ,Multidrug Resistance-Associated Proteins ,Trinucleotide Repeat Expansion ,Carcinogenesis ,Microsatellite Repeats - Abstract
Mutator phenotype tumors provide unique opportunities to unravel malignant progression because of various gene alterations acquired during clonal tumor evolution. Gastric carcinomas, which have been known to show frequent genetic instability, would be composed of initial gene alterations shared by most tumor areas and subsequent alterations restricted to particular tumor sites. To analyse the timing of genetic events, we examined separate sites of tumor tissue obtained from a given gastric carcinoma patient with microsatellite instability (MSI). Our study included 95 normal/tumor area pairs from 25 patients. Six of the 25 patients (24%) demonstrated various levels of MSI ranging from 7% (two of 30) to 97% (28 of 29) of markers tested in multiple tumor sites. Of the six patients, five manifested frameshift mutations in a tract of ten deoxyadenosines within transforming growth factor beta receptor type II and four demonstrated frameshift mutations in a tract of eight deoxyguanosines within BAX. These mutations were common to all tumor sites regardless of the various level of MSI phenotype, indicating initial events. Two of the six patients exhibited frameshift mutations in mononucleotide repeats of mismatch repair genes, hMSH3 and hMSH6, and the insulin-like growth factor II receptor in restricted tumor areas, indicating additional alterations. Insulin-like growth factor II receptor mutations appear to be caused by hMSH3 and hMSH6 mutations because the former mutations were confined to tumor portions with the latter two mismatch repair lesions. These results provide genetic progression evidence for gastric carcinomas of the mutator pathway. In this pathway, mismatch repair insufficiency initially targets mononucleotide tracts of transforming growth factor beta receptor type II and BAX. During tumorigenesis, primary mismatch repair failure may give rise to the secondary mismatch repair lesions, frameshift mutations of hMSH3 and hMSH6, which result in another tumorigenic mutation in the insulin-like growth factor II receptor.
- Published
- 1997
25. Design and Implementation of Emotion Patterns Based on Speech Recognition Analysis
- Author
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Gyoo-Seok Choi, Eun-Joo Seo, Myung-Jae Lim, Sun-Jin Oh, and Ki-Young Lee
- Subjects
Feeling ,Computer science ,media_common.quotation_subject ,Speech recognition ,Interface (computing) ,Biomedical signal ,State (computer science) ,Mobile device ,media_common - Abstract
In the current IT market, the expectation is growing that the contents reflecting our emotions and feelings will be available soon. Accordingly, the research to analyze emotional elements is focused on the voice recognition or biomedical signal, both of which express out emotions. In this paper, the interface, analyzing voice recognition from a mobile device and biomedical signal reflecting change in emotions, is designed and established to market it able to predict the users’ emotional state.
- Published
- 2012
26. Mechanism of Inhibition of Retrovirus Release from Cells by Interferon-Induced Gene ISG15 ▿
- Author
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Zhizhou Kuang, Eun Joo Seo, and Jonathan Leis
- Subjects
Endosome ,Immunology ,Blotting, Western ,macromolecular substances ,Biology ,Virus Replication ,Microbiology ,ESCRT ,Cell Line ,Cell membrane ,Interferon ,Virology ,medicine ,Humans ,RNA, Small Interfering ,Ubiquitins ,Vacuolar protein sorting ,ISG15 ,Molecular biology ,Virus Release ,Cell biology ,medicine.anatomical_structure ,Retroviridae ,CHMP5 ,Insect Science ,Mutagenesis, Site-Directed ,Pathogenesis and Immunity ,Cytokines ,Electrophoresis, Polyacrylamide Gel ,Interferons ,medicine.drug - Abstract
Budding of retroviruses from cell membranes requires ubiquitination of Gag and recruitment of cellular proteins involved in endosome sorting, including e ndosome s orting c omplex r equired for t ransport III (ESCRT-III) protein complex and v acuolar p rotein s orting 4 (VPS4) and its ATPase. In response to infection, a cellular mechanism has evolved that blocks virus replication early and late in the budding process through expression of interferon-stimulated gene 15 (ISG15), a dimer homologue of ubiquitin. Interferon treatment of DF-1 cells blocks avian sarcoma/leukosis virus release, demonstrating that this mechanism is functional under physiological conditions. The late block to release is caused in part by a loss in interaction between VPS4 and its coactivator protein LIP5, which is required to promote the formation of the ESCRT III-VPS4 double-hexamer complex to activate its ATPase. ISG15 is conjugated to two different LIP5-ESCRT-III-binding ch arged m ultivesicular body proteins, CHMP2A and CHMP5. Upon ISGylation of each, interaction with LIP5 is no longer detected. Two other ESCRT-III proteins, CHMP4B and CHMP6, are also conjugated to ISG15. ISGylation of CHMP2A, CHMP4B, and CHMP6 weakens their binding directly to VPS4, thereby facilitating the release of this protein from the membrane into the cytosol. The remaining budding complex fails to release particles from the cell membrane. Introducing a mutant of ISG15 into cells that cannot be conjugated to proteins prevents the ISG15-dependent mechanism from blocking virus release. CHMP5 is the primary switch to initiate the antiviral mechanism, because removal of CHMP5 from cells prevents ISGylation of CHMP2A and CHMP6.
- Published
- 2011
27. [Comparison of quantitative results among two automated Rapid Plasma Reagin (RPR) assays and a manual RPR test]
- Author
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Hae Kyung Lee, Jehoon Lee, Soo-Young Kim, Hi Jeong Kwon, Hyunjung Kim, Yeong Sic Kim, Eun Joo Seo, and Ki Ouk Min
- Subjects
Male ,medicine.diagnostic_test ,business.industry ,Biochemistry (medical) ,Clinical Biochemistry ,Becton dickinson ,General Medicine ,urologic and male genital diseases ,Virology ,Sensitivity and Specificity ,Rapid plasma reagin ,Syphilis Serodiagnosis ,Titer ,Automation ,stomatognathic system ,Immunology ,medicine ,Humans ,Female ,Reagent Kits, Diagnostic ,Syphilis ,Treponema pallidum ,business ,Reagins - Abstract
Background : We compared two automated Rapid Plasma Reagin (RPR) assay kits with a manu- al RPR assay kit to evaluate the possibility of using the two automated RPR assays as an alternative to the manual RPR assay for a quantitative monitoring. Methods : One hundred eighty-five samples were analyzed, including 16 sera from patients with primary, secondary, and latent syphilis. Measured RPR unit (R.U.) values of two automated RPR assay kits, Mediace RPR (Sekisui Chemical Co., Ltd, Japan) and HBi Auto RPR (HBI Co., Ltd, Korea), were compared with the RPR titers of Macro-Vue RPR card test (Becton Dickinson BD Microbiolo- gy systems, USA). As a confirmatory test, Anti-Treponema pallidum EUROLINE WB (IgG) and Anti- Treponema pallidum EUROLINE WB (IgM) (Euroimmun, Germany) were used. Results : There was a prozone effect with Mediace RPR at RPR titer (card test) of 1:16, but not with HBi Auto RPR. The R.U. values of the two automated RPR assays did not show proportional increase to the RPR titer. Agreement between manual RPR and two automated RPR assay kits, Me- diace RPR assay and HBi Auto RPR assay, were 83.8% and 83.2%, respectively. Conclusions : The two automated RPR assay kits could not be used as an alternative to manual RPR test for quantitative analysis of RPR titer. As Mediace RPR shows a prozone effect at relatively low RPR titer, caution is needed in the interpretation of the measured values. (Korean J Lab Med 2009; 29:331-7)
- Published
- 2009
28. Erdheim-Chester disease with lung involvement mimicking pulmonary lymphangitic carcinomatosis
- Author
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Hyeon Sook Kim, Sung Kyung Kim, Sang Haak Lee, Hyeon Hui Kang, Seung-Ah Yahng, Bae Young Lee, Hwa Sik Moon, and Eun Joo Seo
- Subjects
medicine.medical_specialty ,Pathology ,Erdheim-Chester Disease ,Lymphangitis ,Lung biopsy ,Metastatic carcinoma ,Fatal Outcome ,medicine ,Humans ,Radionuclide Imaging ,Lung ,PET-CT ,medicine.diagnostic_test ,business.industry ,Carcinoma ,General Medicine ,Middle Aged ,medicine.disease ,Histiocytosis ,medicine.anatomical_structure ,Bone scintigraphy ,Lymphangitic Carcinomatosis ,Erdheim–Chester disease ,Female ,Radiology ,business ,Tomography, X-Ray Computed - Abstract
Erdheim-Chester disease (ECD) is a rare proliferative non-Langerhans cell histiocytosis of multiple organs with unknown etiology. Around 20% of ECD cases are reported to be associated with lung involvement and there are very few cases manifested solely by nonspecific respiratory symptoms. A 50-year-old woman presented with dry cough and dyspnea for 2 weeks. Chest computed tomography (CT) revealed diffuse interlobular septal and fissural thickening with perilymphatic and subpleural nodular opacities, suggesting pulmonary lymphangitic spread of metastatic carcinoma. Bone scintigraphy and positron emission tomography/CT showed multiple skeletal and lymph node involvement. The patient underwent surgical lung biopsy and the pathologic feature was consistent with ECD. We describe this case to emphasize that ECD should be included in the differential diagnosis of cases suspected to have lymphangitic lung carcinomatosis. Moreover, the findings of positron emission tomography/CT scan, which showed hot uptakes in the affected areas, are also described.
- Published
- 2009
29. The 5'-end transitional CpGs between the CpG islands and retroelements are hypomethylated in association with loss of heterozygosity in gastric cancers
- Author
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Seung-Jin Hong, Mun-Gan Rhyu, Eun-Joo Seo, Yu-Chae Jung, Young-Ho Kim, Sang Wook Choi, and S.I. Kim
- Subjects
Male ,Cancer Research ,Retroelements ,5' Flanking Region ,Heterochromatin ,Gene Dosage ,Loss of Heterozygosity ,Alu element ,Biology ,Polymerase Chain Reaction ,Gene dosage ,lcsh:RC254-282 ,Epigenesis, Genetic ,Loss of heterozygosity ,Alu Elements ,Stomach Neoplasms ,Dosage Compensation, Genetic ,Genetics ,Humans ,Aged ,Terminal Repeat Sequences ,DNA, Neoplasm ,Methylation ,DNA Methylation ,Middle Aged ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Chromosomal Loss ,Long Interspersed Nucleotide Elements ,CpG site ,Oncology ,Gastric Mucosa ,DNA methylation ,Cancer research ,CpG Islands ,Female ,Research Article ,Microsatellite Repeats - Abstract
Background A loss of heterozygosity (LOH) represents a unilateral chromosomal loss that reduces the dose of highly repetitive Alu, L1, and LTR retroelements. The aim of this study was to determine if the LOH events can affect the spread of retroelement methylation in the 5'-end transitional area between the CpG islands and their nearest retroelements. Methods The 5'-transitional area of all human genes (22,297) was measured according to the nearest retroelements to the transcription start sites. For 50 gastric cancer specimens, the level of LOH events on eight cancer-associated chromosomes was estimated using the microsatellite markers, and the 5'-transitional CpGs of 20 selected genes were examined by methylation analysis using the bisulfite-modified DNA. Results The extent of the transitional area was significantly shorter with the nearest Alu elements than with the nearest L1 and LTR elements, as well as in the extragenic regions containing a higher density of retroelements than in the intragenic regions. The CpG islands neighbouring a high density of Alu elements were consistently hypomethylated in both normal and tumor tissues. The 5'-transitional methylated CpG sites bordered by a low density of Alu elements or the L1 and LTR elements were hypomethylated more frequently in the high-level LOH cases than in the low-level LOH cases. Conclusion The 5'-transitional methylated CpG sites not completely protected by the Alu elements were hypomethylated in association with LOH events in gastric cancers. This suggests that an irreversible unbalanced decrease in the genomic dose reduces the spread of L1 methylation in the 5'-end regions of genes.
- Published
- 2006
30. Methylation of p16(INK4A) and p57(KIP2) are involved in the development and progression of gastric MALT lymphomas
- Author
-
Chang Suk Kang, Hi Jeong Kwon, Eun Joo Seo, Ki Ouk Min, Eui Jin Lee, Kyoung-Mee Kim, and Won Il Kim
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,P57 kip2 ,medicine.disease_cause ,Polymerase Chain Reaction ,Pathology and Forensic Medicine ,Helicobacter Infections ,immune system diseases ,Stomach Neoplasms ,hemic and lymphatic diseases ,medicine ,Humans ,Gene ,Cyclin-Dependent Kinase Inhibitor p57 ,B cell ,Cyclin-Dependent Kinase Inhibitor p16 ,Aged ,Kinase ,business.industry ,Methylation ,Lymphoma, B-Cell, Marginal Zone ,DNA Methylation ,Middle Aged ,medicine.disease ,digestive system diseases ,Lymphoma ,medicine.anatomical_structure ,DNA methylation ,Immunology ,Cancer research ,Disease Progression ,Female ,Carcinogenesis ,business - Abstract
p16(INK4A) and p57(KIP2) are inhibitors of cyclin-dependent kinases and their inactivation by methylation has been reported as a major tumorigenic mechanism in tumors. To examine whether methylation of p16(INK4A) and p57(KIP2) is involved in the development and progression of gastric MALT lymphomas, 24 gastric low-grade lymphomas of MALT, 11 diffuse large B-cell lymphomas, and 10 each case of gastric lymphoid follicles with and without Helicobacter pylori infection were studied. H. pylori infection was positive in 85.7% of the gastric lymphomas. In the gastric lymphoid follicles positive for H. pylori, methylation of p16(INK4A) was detected in 10% of cases, while methylation of p57(KIP2) was not detected. In low-grade MALT lymphomas, p16(INK4A) and p57(KIP2) were methylated in 41.7 and 29.2% of the cases, respectively. In diffuse large B-cell lymphomas, methylation of p16(INK4A) and p57(KIP2) was found in 72.7 and 36.4% of the cases, respectively. All but one case with p16(INK4A) and p57(KIP2) methylation was H. pylori positive and most of them were stage I. Our results indicate that methylation of p16(INK4A) followed by p57(KIP2) methylation involves during the tumorigenesis of gastric MALT lymphomas associated with H. pylori infection. As methylation of these two genes was more frequent in the higher grade (P
- Published
- 2005
31. Pseudomyxoma peritonei: extraperitoneal spread to the pleural cavity and lung
- Author
-
Kyung Sub Song, Hyeon Sook Kim, Hwa Sik Moon, Jae Moon Lee, Sang Haak Lee, Bae Young Lee, Eun Joo Seo, Song Mee Cho, Ki Ouk Min, and Kang Hoon Lee
- Subjects
Pulmonary and Respiratory Medicine ,Male ,medicine.medical_specialty ,Lung ,Lung Neoplasms ,business.industry ,Pleural Neoplasms ,Pleural cavity ,Middle Aged ,medicine.disease ,Pseudomyxoma Peritonei ,medicine.anatomical_structure ,X ray computed ,Medicine ,Pseudomyxoma peritonei ,Humans ,Radiology, Nuclear Medicine and imaging ,Radiology ,business ,Tomography, X-Ray Computed - Abstract
Abdominal and pelvic recurrence of pseudomyxoma peritonei after the surgery is occasionally seen but extraperitoneal spread and hematogeneous metastases are rare. This case of pseudomyxoma peritonei provides interesting radiologic findings of extraperitoneal spread, which occurred after an extremely long interval from initial diagnosis.
- Published
- 2004
32. The Influence of Hemolysis, Turbidity and Icterus on the Measurements of CK-MB, Troponin I and Myoglobin
- Author
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Ki Ouk Min, Eun Joo Seo, and Hi Jeong Kwon
- Subjects
medicine.medical_specialty ,Bilirubin ,Clinical Biochemistry ,Jaundice ,Reference range ,macromolecular substances ,Hemolysis ,Gastroenterology ,chemistry.chemical_compound ,Internal medicine ,Troponin I ,medicine ,Creatine Kinase, MB Form ,Humans ,Creatine Kinase ,Hyperbilirubinemia ,Unconjugated hyperbilirubinemia ,Immunoassay ,biology ,Myoglobin ,business.industry ,Biochemistry (medical) ,General Medicine ,medicine.disease ,Isoenzymes ,Biochemistry ,chemistry ,Cardiovascular Diseases ,Luminescent Measurements ,biology.protein ,Creatine kinase ,medicine.symptom ,business ,Biomarkers - Abstract
To decide on the acceptability of a specimen for the measurement of serum CK-MB, troponin I and myoglobin, we investigated the influence of hemolysis, turbidity, and icterus on those tests by adding arbitrarily made interferents. A total of 16 cases each for CK-MB and troponin I, and 18 cases for myoglobin tests were studied to verify the effects of hemolysis, turbidity, and unconjugated hyperbilirubinemia. A total of 16 cases were studied to clarify the effects of the conjugated hyperbilirubinemia. We graded the severity of hemolysis, turbidity, and icterus as mild, moderate, and severe after adding hemolysate, Intralipos (20% soybean oil), and unconjugated or conjugated bilirubin to sera. ACS180SE automated chemiluminescence system was used to measure CK-MB, troponin I, and myoglobin. CK-MB and troponin I were affected by any degree of hemolysis, turbidity, unconjugated hyperbilirubinemia, and conjugated hyperbilirubinemia, while myoglobin was affected only by severe unconjugated hyperbilirubinemia and conjugated hyperbilirubinemia in the samples with concentration higher than reference range, resulting in concentration level lower than baseline. In conclusion, the results of cardiac markers should be carefully interpreted when the specimens are hemolyzed, turbid or icteric.
- Published
- 2003
33. Role of the connectivity of secondary structure segments in the folding of alpha(1)-antitrypsin
- Author
-
Cheolju Lee, Eun Joo Seo, and Myeong Hee Yu
- Subjects
Models, Molecular ,Circular dichroism ,Protein Folding ,animal structures ,Protein Conformation ,Equilibrium unfolding ,Biophysics ,Serpin ,Biochemistry ,Protein Structure, Secondary ,Protein structure ,Native state ,Escherichia coli ,Humans ,Urea ,Molecular Biology ,Protein secondary structure ,Guanidine ,Serpins ,Dose-Response Relationship, Drug ,Chemistry ,Circular Dichroism ,Cell Biology ,Hydrogen-Ion Concentration ,Protein Structure, Tertiary ,carbohydrates (lipids) ,Folding (chemistry) ,Crystallography ,Spectrometry, Fluorescence ,Parasympathomimetics ,alpha 1-Antitrypsin ,embryonic structures ,Protein folding ,Electrophoresis, Polyacrylamide Gel ,Protein Binding - Abstract
The native form of serpins (serine protease inhibitors) is metastable, which is critical to their biological functions. Spontaneous conversion from the native form of serpins into a more stable conformation, called the "latent" form, is restricted. To examine whether the connectivity of strand 1 of beta-sheet C to the hydrophobic core is critical to the serpin's preferential folding to the metastable native conformation, we designed a circularly-permuted mutant of alpha(1)-antitrypsin, the prototype serpin, in which strand 1C is disconnected from the hydrophobic core. Conformation of the circular permutant was similar to that of the latent form, as revealed by equilibrium unfolding, limited proteolysis, and spectroscopic properties. Our results support the notion that rapid folding of the hydrophobic core with concomitant incorporation of strand 1C into beta-sheet C traps the serpin molecule into its native metastable conformation.
- Published
- 2001
34. Distribution of the native strain in human alpha 1-antitrypsin and its association with protease inhibitor function
- Author
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Kyoon Eon Kim, Eun Joo Seo, Ha Na Im, Jin Soo Maeng, and Myeong Hee Yu
- Subjects
Models, Molecular ,Proteases ,Serine Proteinase Inhibitors ,Protein Conformation ,medicine.medical_treatment ,Biology ,medicine.disease_cause ,Biochemistry ,Enzyme Stability ,Native state ,medicine ,Humans ,Molecular Biology ,chemistry.chemical_classification ,Mutation ,Protease ,Strain (chemistry) ,Cell Biology ,Protease inhibitor (biology) ,Recombinant Proteins ,Enzyme ,chemistry ,Mutagenesis ,alpha 1-Antitrypsin ,Function (biology) ,medicine.drug - Abstract
Serine protease inhibitors (serpins) are metastable in their native state. This strain, which is released upon binding to target proteases, is essential for the inhibitory activity of serpins. To understand the structural basis of the native strain, we previously characterized stabilizing mutations of alpha(1)-antitrypsin, a prototypical inhibitory serpin, in regions such as the hydrophobic core. The present study evaluates the effects of single point mutations throughout the molecule on stability and protease inhibitory activity. We identified stabilizing mutations in most secondary structures, suggesting that the native strain is distributed throughout the molecule. Examination of the substitution patterns and the structures of the mutation sites revealed surface hydrophobic pockets as a component of the native strain in alpha(1)-antitrypsin, in addition to the previously identified unusual interactions such as side chain overpacking and cavities. Interestingly, many of the stabilizing substitutions did not affect the inhibitory activity significantly. Those that affected the activity were confined in the regions that are mobilized during the complex formation with a target enzyme. The results of our study should be useful for designing proteins with strain and for regulating the stability and functions of serpins.
- Published
- 2000
35. Metastability in the inhibitory mechanism of human alpha1-antitrypsin
- Author
-
Eun Joo Seo, Hana Im, and Myeong Hee Yu
- Subjects
Models, Molecular ,Protease ,Strain (chemistry) ,Protein Conformation ,medicine.medical_treatment ,Lysine ,Cell Biology ,Biology ,Inhibitory postsynaptic potential ,Biochemistry ,Fusion protein ,Recombinant Proteins ,Amino Acid Substitution ,Metastability ,alpha 1-Antitrypsin ,medicine ,Biophysics ,Humans ,Thermodynamics ,Biological regulation ,Molecular Biology ,Pancreatic elastase - Abstract
Metastability of the native form of proteins has been recognized as a mechanism of biological regulation. The energy-loaded structure of the fusion protein of influenza virus and the strained native structure of serpins (serine protease inhibitors) are typical examples. To understand the structural basis and functional role of the native metastability of inhibitory serpins, we characterized stabilizing mutations of alpha1-antitrypsin in a region presumably involved in complex formation with a target protease. We found various unfavorable interactions such as overpacking of side chains, polar-nonpolar interactions, and cavities as the structural basis of the native metastability. For several stabilizing mutations, there was a concomitant decrease in the inhibitory activity. Remarkably, some substitutions at Lys-335 increased the stability over 6 kcal mol-1 with simultaneous loss of activity over 30% toward porcine pancreatic elastase. Considering the location and energetic cost of Lys-335, we propose that this lysine plays a pivotal role in conformational switch during complex formation. Our current results are quite contradictory to those of previously reported hydrophobic core mutations, which increased the stability up to 9 kcal mol-1 without any significant loss of activity. It appears that the local strain of inhibitory serpins is critical for the inhibitory activity.
- Published
- 1999
36. Pulmonary Langerhans' cell histiocytosis presented with recurrent pneumothorax
- Author
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Eun Joo Seo, Chan Beom Park, Chi Kyung Kim, and Ung Jin
- Subjects
Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Pathology ,Lung ,business.industry ,Interstitial lung disease ,Clinical manifestation ,respiratory system ,medicine.disease ,Pulmonary Langerhans cell histiocytosis ,respiratory tract diseases ,Histiocytosis ,medicine.anatomical_structure ,Pneumothorax ,medicine ,Surgery ,Recurrent pneumothorax ,Lymph ,Radiology ,Cardiology and Cardiovascular Medicine ,business - Abstract
Pulmonary Langerhans' cell histiocytosis is a relatively unusual, interstitial lung disease. Several organ systems may be involved, including the lung, bone, liver, lymph nodes and brain. It is known to occur preferentially in heavy smokers, and the cases such as ours presenting pneumothorax as the major clinical manifestation are rare.
- Published
- 2006
37. DNA Methylation and Expression Patterns of Key Tissue-specific Genes in Adult Stem Cells and Stomach Tissues
- Author
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Yu-Chae Jung, Sang Wook Choi, Jung Hwan Oh, Eun Joo Seo, Mun-Gan Rhyu, Seung-Jin Hong, Seung Hye Choi, Moo-Il Kang, Young-Ho Kim, and S.I. Kim
- Subjects
Adult ,Male ,Stromal cell ,Adolescent ,Transcription, Genetic ,Biology ,Tissue-Specific Gene ,Polymerase Chain Reaction ,Transcription (biology) ,Humans ,Serial analysis of gene expression ,Gene ,Aged ,Stem Cells ,Gene Expression Profiling ,Stomach ,General Medicine ,Methylation ,DNA Methylation ,Middle Aged ,Molecular biology ,Gene expression profiling ,Adult Stem Cells ,Adipose Tissue ,CpG site ,Gastric Mucosa ,DNA methylation ,Original Article ,CpG Islands ,Female ,Stromal Cells ,Transcription Initiation Site - Abstract
CpG-island margins and non-island-CpG sites round the transcription start sites of CpG-island-positive and -negative genes are methylated to various degrees in a tissue-specific manner. These methylation-variable CpG sites were analyzed to delineate a relationship between the methylation and transcription of the tissue-specific genes. The level of tissue-specific transcription was estimated by counting the number of the total transcripts in the SAGE (serial analysis of gene expression) database. The methylation status of 12 CpG-island margins and 21 non-island CpG sites near the key tissue-specific genes was examined in pluripotent stromal cells obtained from fat and bone marrow samples as well as in lineage-committed cells from marrow bulk, stomach, colon, breast, and thyroid samples. Of the 33 CpG sites examined, 10 non-island-CpG sites, but none of the CpG-island margins were undermethylated concurrent with tissue-specific expression of their nearby genes. The net methylation of the 33 CpG sites and the net amount of non-island-CpG gene transcripts were high in stomach tissues and low in stromal cells. The present findings suggest that the methylation of the non-island-CpG sites is inversely associated with the expression of the nearby genes, and the concert effect of transitional-CpG methylation is linearly associated with the stomach-specific genes lacking CpG-islands.
- Published
- 2009
38. Effect of ursodeoxycholic acid on experimental hepatic porphyria induced by griseofulvin
- Author
-
Je Ho Han, Hee Sik Sun, Kyu Taek Lim, Hyun Mee Cho, Eun Joo Seo, Boo Sung Kim, Doo Ho Park, Sang Wook Choi, and Kyu Won Chung
- Subjects
medicine.medical_specialty ,Choleretic ,Porphobilinogen ,Griseofulvin ,Hepatic porphyria ,Mice ,Porphyrias ,Cholestasis ,Internal medicine ,medicine ,Mallory body ,Animals ,Mice, Inbred ICR ,Chemistry ,Liver cell ,Liver Diseases ,Ursodeoxycholic Acid ,Alanine Transaminase ,Bilirubin ,General Medicine ,medicine.disease ,Alkaline Phosphatase ,Ursodeoxycholic acid ,Interlobular bile ducts ,Microscopy, Electron ,Endocrinology ,Liver function ,Chemical and Drug Induced Liver Injury ,medicine.drug ,Research Article - Abstract
Griseofulvin(GF) has become the drug of choice as an antifungal agent for patients who suffer from many kinds of fungal infection. In order to clarify hepatic injury by griseofulvin(GF) overload and the effect of UDCA on GF-induced hepatic injury, the authors carried out biochemical, histologic, and ultrastructural studies of liver following treatment with griseofulvin and ursodeoxycholic acid(UDCA) in mice. Urine porphobilinogen excretion in the group treated with GF alone was significantly increased and reached the highest level in the 4th week and declined thereafter. Biochemical studies of the liver function showed no remarkable changes of serum bilirubin levels throughout the experimental period in all groups, except for SGPT and alkaline phosphatase activities which were significantly elevated and reached the highest level in the second week. Then they slightly decreased in GF treated groups(GF alone and GF plus UDCA) in comparison with the control group. Pathologic findings in the group treated with GF alone include focal liver cell necrosis(esp, zone 3), Mallory bodies in hepatocytes(esp, zone 1), Kupffer cell activation, and brown protoporphyrin pigments in the hepatocytes, bile canaliculi and interlobular bile ducts with a marked inflammatory cell infiltration in the portal tracts. Under the polarizing light microscope, bile ductular and canalicular thrombi showed a "Maltese cross" birefringence in mice treated with GF alone. There is no definite finding of fatty change in hepatocyte. Under the microscope, the liver appeared normal with an intact lobular architecture in the GF plus UDCA treated group. Electron microscopically, GF-induced changes include swelling of mitochondria, globular protoporphyrin crystals in the hepatocyte cytoplasm, markedly dilated bile cannaliculi and bile ducts and the formation of a Mallory hyaline bodies in the hepatocytes. There were no noticeable structural changes in the GF plus UDCA-treated group. Therefore the results suggest that GF causes hepatic injury, namely porphyria and cholestasis, and the treatment of UDCA may have cytoprotective and choleretic effects on GF-induced hepatic injuries.
- Published
- 1991
39. Intracystic Papillary Carcinoma in the Male Breast: A Case Report
- Author
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Dong Ho Lee, Young Jin Seo, Sang Seol Jung, Eun Joo Seo, Seong Su Lee, Seong Keun Kim, Jong Min Baek, Seung Hye Choi, Sang Seob Yun, Woo Chan Park, Ki Ouk Min, Jong Kyung Park, Se Jung Oh, and Byung Joo Song
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,Pathology ,Intracystic papillary carcinoma ,Breast cancer ,business.industry ,Internal medicine ,medicine ,Male breast ,medicine.disease ,business - Abstract
남성유방암은전체유방암의1% 미만으로매우드물게발생하 며조직학적인분류와이에따른발생빈도는여성유방암과비슷 하다.(1) 유방의 유두상 암종(papillary carcinoma)은 여성 유방 암에서 약 0.3-2%를 차지하는 비교적 드문 종양이며 남성 유방 암에서는약5-7.5%를차지하여여성보다는전체남성유방암에 서 차지하는 비율이 약간 높다.(1) 남성 유방암에서 관상피내암 (ductal carcinoma in situ)은 약 7%를 차지하며 대부분은 유두 상암종이라고한다.(2)낭종내유두상암종(intracystic papillary carcinoma)은 비침습성 유두상 암종의 변형으로 남성에서는 매 우드물게발생하며예후가좋다. 저자들은49세남자의우측유 방에서발생한낭종내유두상암종을경험하여문헌고찰과함께 보고하는바이다. 증 례
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- 2008
40. Acute Myocardial Infarction Associated with Secondary Hypertension by Renal Juxtaglomerular Cell Tumor
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Jae Hyung Kim, Chong Jin Kim, Eun Joo Seo, So Young Lee, Kyoung Hee Kim, Eun Ju Cho, and Byoung Soo Jie
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medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Cardiology ,Secondary hypertension ,Radiology, Nuclear Medicine and imaging ,Myocardial infarction ,Cardiology and Cardiovascular Medicine ,medicine.disease ,Juxtaglomerular cell tumor ,business - Published
- 2006
41. Genetic Classification of Breast Cancer based on Unilateral Chromosomal Loss
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Seung Hye Choi, Hyun A Cho, Mun Gan Rhyu, Sang Seob Yun, Seong Su Lee, Sang Wook Choi, Sang Seol Jung, and Eun Joo Seo
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Oncology ,medicine.medical_specialty ,business.industry ,Clone (cell biology) ,Chromosome ,Ductal carcinoma ,medicine.disease ,Chromosomal Loss ,Lesion ,Loss of heterozygosity ,Breast cancer ,Internal medicine ,medicine ,Cancer research ,medicine.symptom ,Stage (cooking) ,business - Abstract
Purpose: The extent of the loss of heterozygosity (LOH) has been used as the genetic parameter for the classification and staging of some solid tumors. Breast cancers such as ductal carcinoma in situ (DCIS), and invasive and metastatic lesions, are frequently observed to contain heterogeneous tumor foci. To delineate the relation between the LOH and the progression of breast cancers, three successive histological sites in a tumor lesion were analyzed for LOH events. Methods: We tested 111 tumor site including DCIS, and invasive, and metastatic lymph nodes from 50 breast cancers for LOH using 5 microsatellite makers on 8 chromosomal arms (3p, 4p, 5q, 8p, 9p, 13q, 17p, & 18q). Results: Twenty-four of 34 breast cancers showing intratumoral histological heterogeneity had common chromosomal losses in the heterogeneous tumor sites, as well as having divergent losses that were restricted to a part of tumor lesion (mean divergent loss, 2.32). The number and frequency of heterogeneous chromosomal losses were not significantly related with age, tumor size, and stage. Overall, at least one chromosomal loss was detected in 48 cases, and incidences of LOH in each chromosome were 27.1∼63.3%. A large fraction (58%) of breast cancer patients had 2 to 4 chromosomal losses, and chromosome 8p was most frequently lost (63%). When comparing the number of chromosomal losses in nine cases with all of three progressive lesions, the lost extent was greater in the DCIS (mean losses, 4.44) than in the invasive sites (mean losses, 3.1) and the metastatic lymph nodes (mean losses, 2.9). Moderate-level chromosomal losses involving 3-5 chromosomes were significantly related with lymph node metastasis (p=0.006) and the advanced tumor stage (p
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- 2004
42. Fate of Atrial Myocardium in Severe Mitral Regurgitation in the Aspect of Programmed Cell Death
- Author
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Sun Hee Lee, Chul Soo Park, Jeong Pyo Kim, Kyu Bo Choi, Tai Ho Rho, Chong Jin Kim, So Yang Kim, Sung Bo Sim, Eun Joo Seo, Ho Joong Youn, Soon Jo Hong, Hae Ok Chung, Eun Ju Cho, Hui Kyung Jeon, and Jae Hyung Kim
- Subjects
Mitral regurgitation ,Programmed cell death ,medicine.medical_specialty ,TUNEL assay ,business.industry ,Atrial fibrillation ,medicine.disease ,medicine.anatomical_structure ,Apoptosis ,Internal medicine ,medicine ,Cardiology ,Immunohistochemistry ,Atrium (heart) ,business ,Pathological - Abstract
Background and Objectives:From the view point of the molecular aspects, the fate of long standing pressure and volume overloaded atrium in severe MR has not been evaluated. This study was performed to elucidate whether apoptosis of right atrial myocytes is related to atrial changes. Subjects and Methods:The medical records of 16 patients (M:F=8:8, mean age=52±12), with severe MR having undergone valve replacement surgery, were retrospectively reviewed. The subjects were divided into 2 groups according to the duration of their symptoms (group I, symptom duration less than 12 months, n=10 and group II, more than 12 months, n=6). Using the atrial myocardium specimens obtained during surgery, TUNEL assays and immunohistochemical staining were performed for the expressions of Fas, Bax and the Bcl family. Results:Apoptotic indices of TUNEL assay were 31.1±12.6 and 4.9±4.3% in groups I and II, respectively (p
- Published
- 2003
43. Juxtaglomerular cell tumor of the kidney: a case report
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Moon Hyang Park, Eun Joo Seo, Eun Sun Jung, Byung Kee Kim, Hi Jeong Kwon, Sang Ah Chang, Ki Ouk Min, Byung Kee Bang, Young Jin Choi, Seok Joo Ahn, Yoon Sik Chang, and Jin Kim
- Subjects
Male ,Kidney ,Hypertension, Renal ,General Medicine ,Juxtaglomerular apparatus ,Anatomy ,Middle Aged ,Biology ,medicine.disease ,Plasma renin activity ,Juxtaglomerular Apparatus ,Kidney Neoplasms ,medicine.anatomical_structure ,Cytoplasm ,Renin ,Renin–angiotensin system ,Eosinophilic ,medicine ,Humans ,Juxtaglomerular cell tumor ,Immunostaining ,Research Article - Abstract
We report a case of renin-secreting juxtaglomerular cell tumor which developed in a hypertensive 47-yr-old Korean man. Presumptive clinical diagnosis was made before surgery based on the high level of plasma renin and the radiologic evidence of renal mass. Grossly, a round, bulging, well-encapsulated mass of 3 x 3 cm was located in the mid-portion of the right kidney. On microscopic examination, the tumor was composed of ovoid to polyhedral cells with bland nuclei, indistinct nucleoli and light eosinophilic cytoplasm. The immunostaining for renin showed strong positivity in the cytoplasm of tumor cells. The characteristic rhomboid shaped renin protogranules were observed in ultrastructural analysis.
- Published
- 2001
44. A Case of Multiple Basal Cell Epithelioma in the Nevus Sebaceus of Jadassohn
- Author
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Jong Han Paik, Jin-Wou Kim, Jun Young Lee, Eun Joo Seo, and Seog Jun Ha
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Pathology ,medicine.medical_specialty ,business.industry ,Nevus sebaceus ,Medicine ,Dermatology ,business ,Basal cell epithelioma - Published
- 1997
45. Ovarian serous cystadenoma associated with Sertoli-Leydig cell tumor: a case report
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Eun Joo Seo, Sang In Shim, and Hi Jeong Kwon
- Subjects
Adult ,Male ,endocrine system ,medicine.medical_specialty ,Pathology ,Cystadenoma ,Ovary ,Biology ,Sertoli-Leydig Cell Tumor ,Internal medicine ,medicine ,Humans ,Ovarian Neoplasms ,Mural Nodule ,Sertoli Cells ,Ovarian serous cystadenoma ,urogenital system ,Leydig Cells ,General Medicine ,Serous Cystadenoma ,Sertoli cell ,medicine.disease ,Serous fluid ,Endocrinology ,medicine.anatomical_structure ,Female ,Research Article - Abstract
We Describe a case of ovarian serous cystadenoma having Sertoli-Leydig cell tumor, well differentiated, in the cystic septum. Well differentiated Sertoli-Leydig cell tumor coexisting with other tumor, including serous tumor, has not yet been described. In all cases of Sertoli-Leydig cell tumor with heterologous components or other tumors, the androblastomatous components are intermediately or poorly differentiated. The present case revealed a well differentiated Sertoli-Leydig cell tumor arising in a septum of serous cystadenoma, as a circumscribed nodule. With these findings, we discuss the possibility of this Sertoli-Leydig cell tumor, considered a mural nodule, which is well established in cystic common epithelial tumors of the ovary.
- Published
- 1996
46. The gene-reduction effect of chromosomal losses detected in gastric cancers.
- Author
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Seung-Jin Hong, Eun-Jung Jeon, Jung-Hwan Oh, Eun-Joo Seo, Sang-Wook Choi, and Mun-Gan Rhyu
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STOMACH cancer ,HETEROZYGOSITY ,GASTRIC acid ,CHROMOSOME abnormalities ,GENES - Abstract
Background: The level of loss of heterozygosity (LOH) that reduces a gene dose and exerts a cell-adverse effect is known to be a parameter for the genetic staging of gastric cancers. This study investigated if the cell-adverse effect induced with the gene reduction was a rate-limiting factor for the LOH events in two distinct histologic types of gastric cancers, the diffuse- and intestinal-types. Methods: The pathologic specimens obtained from 145 gastric cancer patients were examined for the level of LOH using 40 microsatellite markers on eight cancer-associated chromosomes (3p, 4p, 5q, 8p, 9p, 13q, 17p and 18q). Results: Most of the cancer-associated chromosomes were found to belong to the gene-poor chromosomes and to contain a few stomach-specific genes that were highly expressed. A baseline-level LOH involving one or no chromosome was frequent in diffuse-type gastric cancers. The chromosome 17 containing a relatively high density of genes was commonly lost in intestinal-type cancers but not in diffuse-type cancers. A high-level LOH involving four or more chromosomes tended to be frequent in the gastric cancers with intestinal and mixed differentiation. Disease relapse was common for gastric cancers with high-level LOH through both the hematogenous (38%) and non-hematogenous (36%) routes, and for the baseline-level LOH cases through the non-hematogenous route (67%). Conclusions: The cell-adverse effect of gene reduction is more tolerated in intestinal-type gastric cancers than in diffuse-type cancers, and the loss of high-dose genes is associated with hematogenous metastasis. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
47. Protein kinase PKR mutants resistant to the poxvirus pseudosubstrate K3L protein.
- Author
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Eun Joo Seo, Liu, Furong, Kawagishi-Kobayashi, Makiko, Ung, Tekly L., Cao, Chune, Dar, Arvin C., Sicheri, Frank, and Dever, Thomas E.
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- *
PROTEIN kinases , *POXVIRUSES , *PROTEIN synthesis , *VIRAL replication , *IMMUNE response , *PHOSPHORYLATION - Abstract
As part of the mammalian cell innate immune response, the doublestranded RNA activated protein kinase PKR phosphorylates the translation initiation factor elF2α to inhibit protein synthesis and thus block viral replication. Poxviruses including vaccinia and smallpox viruses express PKR inhibitors such as the vaccinia virus K3L protein that resembles the N-terminal substrate-targeting domain of elF2α. Whereas high-level expression of human PKR was toxic in yeast, this growth inhibition was suppressed by coexpression of the K3L protein. We used this yeast assay to screen for PKR mutants that are resistant to K3L inhibition, and we identified 12 mutations mapping to the C-terminal lobe of the PKR kinase domain. The PKR mutations specifically conferred resistance to the K3L protein both in yeast and in vitro. Consistently, the PKR-D486V, mutation led to nearly a 15-fold decrease in K3L binding affinity yet did not impair elF2α phosphorylation. Our results support the identification of the elF2α-binding site on an extensive face of the C-terminal lobe of the kinase domain, and they indicate that subtle changes to the PKR kinase domain can drastically impact pseudosubstrate inhibition while leaving substrate phosphorylation intact. We propose that these paradoxical effects of the PKR mutations on pseudosubstrate vs. substrate interactions reflect differences between the rigid K3L protein and the plastic nature of elF2α around the Ser-51 phosphorylation site. [ABSTRACT FROM AUTHOR]
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- 2008
- Full Text
- View/download PDF
48. Methylation of p16INK4A and p57KIP2 are involved in the development and progression of gastric MALT lymphomas.
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Ki Ouk Min, Eun Joo Seo, Hi Jeong Kwon, Eui Jin Lee, Won Il Kim, Chang Suk Kang, and Kyoung-Mee Kim
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- 2006
- Full Text
- View/download PDF
49. p53 protein overexpression and allele loss of p53 gene in gastric adenocarcinoma
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Chang Soo Park, Sang Wook Choi, Chang Suk Kang, Eun Joo Seo, Hee Sik Sun, Boo Sung Kim, Moo Joo Lee, Won Sang Park, and Jin Mo Yang
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Genetic Markers ,Molecular Sequence Data ,Adenocarcinoma ,Biology ,Polymerase Chain Reaction ,Exon ,Stomach Neoplasms ,medicine ,Humans ,Allele ,Gene ,Alleles ,Regulation of gene expression ,Base Sequence ,Point mutation ,DNA, Neoplasm ,General Medicine ,Genes, p53 ,medicine.disease ,Molecular biology ,Gene Expression Regulation, Neoplastic ,Cancer research ,Restriction fragment length polymorphism ,Polymorphism, Restriction Fragment Length ,Immunostaining ,Research Article - Abstract
Gene alterations of p53 tumor suppressor gene such as point mutations, deletions or insertions occur in various human cancers. p53 protein overexpression was studied immunohistochemically in 80 gastric adenocarcinomas using an anti-human p53 antibody (Pab 1801) and the avidin-biotin-peroxidase technique. We have also analyzed allele loss of the human p53 gene in 54 cases of gastric adenocarcinoma using polymerase chain reaction and restriction fragment length polymorphism. p53 immunostaining was also demonstrated in 48 of 80 carcinomas (60%). Normal mucosa was always negative. No relation could be found between p53 immunostaining and the degree of differentiation. 21 of the 54 patients(39%) were informative for the p53 exon 4. In ten of these informative cases(47.6%), tumor DNAs showed allele loss when compared with nonmetastatic lymph node DNAs. Seven of the ten(70%) showed p53 immunoreactivity. These findings suggest that mutations of the p53 gene may play a role in the development of gastric adenocarcinoma and that allele loss of p53 frequently occurs in p53 immunoreactive gastric adenocarcinoma.
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- 1994
50. Genetic classification of intestinal-type and diffuse-type gastric cancers based on chromosomal loss and microsatellite instability.
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Kyoung-Mee Kim, Mee-Sun Kwon, Seung-Jin Hong, Ki-Oak Min, Eun-Joo Seo, Kyo-Young Lee, Sang-Wook Choi, and Mun-Gan Rhyu
- Subjects
CANCER ,GENETICS ,CHROMOSOMES ,GASTROINTESTINAL system - Abstract
The stage of gastrointestinal cancers has been correlated with the loss of heterozygosity (LOH) and the presence of microsatellite instability (MSI). This study delineated the category of the extent of LOH and the presence of MSI for the genetic classification of the intestinal-type and diffuse-type gastric cancers that frequently exhibited intralesional heterogeneity. A total of 390 tumor foci from 116 gastric cancers were screened using a panel of 40 microsatellite markers on chromosomes 3p, 4p, 5q, 8p, 9p, 13q, 17p, and 18q. One MSI-positive gastric cancer accompanying a LOH-positive focus and 19 gastric cancers with an intralesional LOH heterogeneity with a similar extent were identified. One hundred and sixteen gastric cancers were categorized based on the presence of MSI (16 cases) and the extent of LOH (100 cases) in a representative focus. A large fraction of MSI-positive cases was found in the intestinal-type (94%), late-onset (mean age 68 years), early-stage (75%) diseases ( P<0.05). The diffuse-type gastric cancers with a baseline-level loss involving zero or one chromosome showed a correlation with the earlier onset (mean age 45 years), advanced-stage (81%) diseases ( P<0.0001). In both the intestinal-type and diffuse-type gastric cancers, a low-level loss involving 0?3 chromosomes (2?3 chromosomes in the diffuse type) and a high-level loss involving 4?7 chromosomes were predominant in the early (69%) and advanced (86%) stages, respectively ( P<0.0001), at similar mean ages of onset (61 years and 65 years). Gastric cancers were categorized into low-risk (MSI and low-level LOH) and high-risk (baseline-level and high-level LOH) genotypes displaying cell-type- and age-dependent oncogenicity. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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