28 results on '"Esteban‐Fernández, D."'
Search Results
2. Speciation analysis of platinum antitumoral drugs in impacted tissues
- Author
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Esteban-Fernández, D., Gómez-Gómez, M.M., Cañas, B., Verdaguer, J.M., Ramírez, R., and Palacios, M.A.
- Published
- 2007
- Full Text
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3. An approach for quantification of platinum distribution in tissues by LA-ICPMS imaging using isotope dilution analysis
- Author
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Moraleja, I., Mena, María Luz, Lázaro, A., Neumann, B., Tejedor, A., Jakubowski, N., Gómez Gómez, M.Milagros, Esteban Fernández, D., Moraleja, I., Mena, María Luz, Lázaro, A., Neumann, B., Tejedor, A., Jakubowski, N., Gómez Gómez, M.Milagros, and Esteban Fernández, D.
- Abstract
Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) has been revealed as a convenient technique for trace elemental imaging in tissue sections, providing elemental 2D distribution at a quantitative level. For quantification purposes, in the last years several approaches have been proposed in the literature such as the use of CRMs or matrix matched standards. The use of Isotope Dilution (ID) for quantification by LA-ICPMS has been also described, being mainly useful for bulk analysis but not feasible for spatial measurements so far. In this work, a quantification method based on ID analysis was developed by printing isotope-enriched inks onto kidney slices from rats treated with antitumoral Pt-based drugs using a commercial ink-jet device, in order to perform an elemental quantification in different areas from bio-images. For the ID experiments 194Pt enriched platinum was used. The methodology was validated by deposition of natural Pt standard droplets with a known amount of Pt onto the surface of a control tissue, where could be quantified even 50 pg of Pt, with recoveries higher than 90%. The amount of Pt present in the whole kidney slices was quantified for cisplatin, carboplatin and oxaliplatin-treated rats. The results obtained were in accordance with those previously reported. The amount of Pt distributed between the medullar and cortical areas was also quantified, observing different behavior for the three drugs., Ministerio de Economía y Competitividad (MINECO), Depto. de Química Analítica, Fac. de Ciencias Químicas, TRUE, pub
- Published
- 2018
4. Application of higher energy collisional dissociation (HCD) to the fragmentation of new DOTA-based labels and N-termini DOTA-labeled peptides
- Author
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El-Khatib, A. H., primary, He, Y., additional, Esteban-Fernández, D., additional, and Linscheid, M. W., additional
- Published
- 2017
- Full Text
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5. MeCAT labeling for absolute quantification of intact proteins using label-specific isotope dilution ICP-MS
- Author
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Esteban-Fernández, D., primary, Bierkandt, F. S., additional, and Linscheid, M. W., additional
- Published
- 2012
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6. Cisplatin-induced hearing loss does not correlate with intracellular platinum concentration
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Ramírez-Camacho, R., primary, Esteban Fernández, D., additional, Verdaguer, J.M., additional, Gómez Gómez, M.M., additional, Trinidad, A., additional, García-Berrocal, J.R., additional, and Palacios Corvillo, M.A., additional
- Published
- 2008
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7. SEC-ICP-MS and ESI-MS as tools to study the interaction between cisplatin and cytosolic biomolecules
- Author
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Esteban-Fernández, D., primary, Cañas, B., additional, Pizarro, I., additional, Palacios, M. A., additional, and Gómez-Gómez, M. M., additional
- Published
- 2007
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8. Accumulation, Fractionation, and Analysis of Platinum in Toxicologically Affected Tissues after Cisplatin, Oxaliplatin, and Carboplatin Administration.
- Author
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Esteban-Fernández, D., Verdaguer, J. M., Ramirez-Camacho, R., Palacios, M.A., and Gómez-Gómez, M. M.
- Subjects
- *
CISPLATIN , *PLATINUM compounds , *TOXICOLOGY , *OXALIPLATIN , *TISSUES , *ORGANS (Anatomy) , *LIQUID chromatography , *DRUG side effects , *DRUG interactions , *PHARMACODYNAMICS , *BIOMOLECULES - Abstract
The article reports on platinum's accumulation, fractionation, and analysis in toxicologically affected tissues after oxaliplatin, cisplatin, and carboplatin administration. It mentions that Pt-drugs for tumor treatment present side effects like ototoxicity and nephrotoxicity. A study conducted to identify the maximum concentration of Pt in the cells and cytosols of kidney, liver, and ear is discussed. Cytosols' analysis with the use of liquid chromatography showed an analogous behavior. Under denaturing conditions, cisplatin-biomolecule interaction strength was evaluated by LC-ICP-MS and showed a quite strong bond.
- Published
- 2008
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9. Analytical Models for Multipath and Switch Leakage for the SWOT Interferometer.
- Author
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Ahmed R, Esteban-Fernández D, and Hensley S
- Abstract
The Ka-Band Radar Interferometer (KaRIn) instrument on the Surface Water and Ocean Topography (SWOT) mission is a single-pass synthetic aperture radar (SAR) interferometer tasked with, among others, measuring ocean topography to within a few centimeters over kilometer scale resolutions. A SAR interferometer relies on very precise phase difference measurements between two spatially distant antennas to estimate topography. Multipath phase caused by unintended scattering off the spacecraft structure is a known error source for radar interferometers and takes up a significant portion of the KaRIn error budget. This paper outlines some analytical multipath models that were used for instrument design, performance analysis and mitigation of the multipath signal.
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- 2022
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10. Lipid imaging for visualizing cilastatin amelioration of cisplatin-induced nephrotoxicity.
- Author
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Moreno-Gordaliza E, Esteban-Fernández D, Lázaro A, Aboulmagd S, Humanes B, Tejedor A, Linscheid MW, and Gómez-Gómez MM
- Subjects
- Animals, Cytoprotection drug effects, Female, Kidney diagnostic imaging, Lipid Peroxidation drug effects, Rats, Rats, Wistar, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Cilastatin metabolism, Cisplatin adverse effects, Kidney drug effects, Kidney metabolism, Lipid Metabolism drug effects, Molecular Imaging
- Abstract
Nephrotoxicity is a major limitation to cisplatin antitumor therapies. Cilastatin, an inhibitor of renal dehydropeptidase-I, was recently proposed as a promising nephroprotector against cisplatin toxicity, preventing apoptotic cell death. In this work, cilastatin nephroprotection was further investigated in a rat model, with a focus on its effect on 76 renal lipids altered by cisplatin, including 13 new cisplatin-altered mitochondrial cardiolipin species. Lipid imaging was performed with MALDI mass spectrometry imaging (MALDI-MSI) in kidney sections from treated rats. Cilastatin was proved to significantly diminish the lipid distribution alterations caused by cisplatin, lipid levels being almost completely recovered to those of control samples. The extent of recovery of cisplatin-altered lipids by cilastatin turned out to be relevant for discriminating direct or secondary lipid alterations driven by cisplatin. Lipid peroxidation induced by cisplatin was also shown to be reduced when cilastatin was administered. Importantly, significant groups separation was achieved during multivariate analysis of cortex and outer-medullary lipids, indicating that damaged kidney can be discerned from the nephroprotected and healthy groups and classified according to lipid distribution. Therefore, we propose MALDI-MSI as a powerful potential tool offering multimolecule detection possibilities to visualize and evaluate nephrotoxicity and nephroprotection based on lipid analysis., (Copyright © 2018 by the American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2018
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11. Dual Internal Standards with Metals and Molecules for MALDI Imaging of Kidney Lipids.
- Author
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Aboulmagd S, Esteban-Fernández D, Moreno-Gordaliza E, Neumann B, El-Khatib AH, Lázaro A, Tejedor A, Gómez-Gómez MM, and Linscheid MW
- Subjects
- Animals, Female, Rats, Wistar, Reference Standards, Reproducibility of Results, Kidney chemistry, Lipids analysis, Phosphatidylcholines chemistry, Phosphatidylethanolamines chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization standards, Thulium chemistry
- Abstract
The quest for internal standards useful in MALDI imaging studies goes on to get not only lateral distribution but also reliable relative quantitative information. We developed a method based on application of matrix and dual internal standards to allow intra- and intersample normalization of lipids intensities in kidney sections of control and cisplatin-treated Wistar rats. An inkjet printer was used to deposit a custom-prepared ink with DHB as MALDI matrix, a primary lipids-based internal standard, and a spiked lanthanide as a secondary internal standard. We applied different laser energy and varied the amounts of matrix-internal standards mixture to evaluate the normalization potential of the internal standards. Successful correction of intensity artifacts caused by instrumental drifts was possible, but not those resulting from uneven matrix application. ICP-MS absolute quantification of the lanthanide in the printed layer ensured the reproducibility of the matrix and internal standards application with RSD of 10-15%. Internal standard-normalized data allowed intrasample modification of the MALDI image to make it compatible with the optical image. Normalization to internal standards corrected a 2-fold difference in lipids intensity, which allowed a meaningful comparison of tissue lipids in control and cisplatin-treated kidneys. More importantly, normalization of lipid relative abundances based on the same adduct type (H
+ , Na+ , and K+ ) for analyte and internal standard corrected for different ionization efficiencies showing a realistic signal level and enabling reliable comparison of different samples on relative quantitative basis.- Published
- 2017
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12. MALDI-LTQ-Orbitrap mass spectrometry imaging for lipidomic analysis in kidney under cisplatin chemotherapy.
- Author
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Moreno-Gordaliza E, Esteban-Fernández D, Lázaro A, Humanes B, Aboulmagd S, Tejedor A, Linscheid MW, and Gómez-Gómez MM
- Subjects
- Animals, Female, Rats, Rats, Wistar, Cisplatin adverse effects, Kidney drug effects, Kidney metabolism, Lipid Metabolism drug effects, Molecular Imaging, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- Abstract
Imaging techniques for mapping molecular distributions in tissue sections can reveal valuable information on biomolecules involved in relevant biochemical processes. A method has been developed for comprehensive, reproducible and sensitive lipid imaging by matrix-assisted laser/desorption ionization-LTQ-Orbitrap mass spectrometry in kidney sections, showing the benefits of exact mass determination. Matrix deposition parameters for positive and negative lipid ion imaging using different matrices such as 2,5-dihydroxybenzoic acid (DHB), 9-aminoacridine (9-AA) or α-cyano-4-hydroxycinnamic acid (CHCA) have been optimized for the broadest detection and identification of renal lipids. The combination of 9-AA and DHB was found as the most suitable for negative and positive ion mode lipid imaging, respectively. Lipid mapping and related identification strategies and limitations have also been discussed. Production of 100-µm resolution images was proved to be enough for discerning lipid distribution in kidney substructures. Imaging reproducibility was assessed on parallel kidney slices with time. This method has been applied to the lipidomics analysis on kidney sections from rats treated with the antitumor drug cisplatin and compared to healthy control rats. Up to 66 different renal lipids out of 450 extracted ion images (mainly phospholipid species, in addition to sulfatides and cholesterol sulfate) have been found and identified showing a modified distribution pattern due to cisplatin-induced nephrotoxicity. These lipid species reflect either topographic, signaling or structural processes in damaged kidney and could potentially be used for nephrotoxicity assessment or as therapeutic targets. This is, to our knowledge, the first imaging lipidomics study for nephrotoxicity assessment of cisplatin chemotherapy., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2017
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13. Application of MeCAT-Click labeling for protein abundance characterization of E. coli after heat shock experiments.
- Author
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He Y, Esteban-Fernández D, Neumann B, Bergmann U, Bierkandt F, and Linscheid MW
- Subjects
- Click Chemistry methods, Escherichia coli chemistry, Escherichia coli metabolism, Escherichia coli Proteins chemistry, Escherichia coli Proteins metabolism, Heat-Shock Response, Lanthanoid Series Elements chemistry, Proteome chemistry, Proteome metabolism
- Abstract
In a proof of concept study, metal-coded affinity tags based on click chemistry (MeCAT-Click) were used to analyze the proteome of Escherichia coli (E. coli) in response to heat stress. This allows high labeling efficiency, high detection sensitivity, and multiplex capabilities, which are pivotal for its application to protein quantification. Two approaches are presented for relative quantification of differentially lanthanide-labeled proteins. The first approach uses isotope-labeling, where ESI-MS was utilized to quantify the differentially labeled proteins from different states of E. coli. With this approach, 14 proteins were found with changed abundance, among them five proteins upregulated. In the second approach, differentially labeled samples were separated by two dimensional gel electrophoresis (2-DE) and scanned by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). Comparison of the signal intensities of the different lanthanides was used to quantify different sample states. Based on this information, ESI-MS was used to identify the proteins with different abundance. The sensitivity of LA-ICP-MS allowed us to find one upregulated protein that was nearly invisible by silver staining ("Probable replication endonuclease from retron EC67"). The advantage of this approach is to locate low abundant proteins with differential expression using LA-ICP-MS, which may be overlooked otherwise., Biological Significance: This paper demonstrates the successful application of a novel metal labeling strategy to quantify the proteins from complex biological samples. In comparison with former metal labeling strategies, it reduces the steric hindrance and improves the labeling efficiency during the labeling process, which ensure its successful application. This methodology is compatible with both molecular and elemental mass spectrometry. ESI-MS/MS in combination with software-based search allows the identification and relative quantification of labeled proteins. In addition, LA-ICP-MS helps to locate the labeled proteins in 2-DE gels with superior detection capability, thus, target proteins with low abundance can be precisely followed. Its excellent sensitivity allows one to track the proteins of interest that are barely visible by silver staining., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
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14. Printing metal-spiked inks for LA-ICP-MS bioimaging internal standardization: comparison of the different nephrotoxic behavior of cisplatin, carboplatin, and oxaliplatin.
- Author
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Moraleja I, Esteban-Fernández D, Lázaro A, Humanes B, Neumann B, Tejedor A, Luz Mena M, Jakubowski N, and Gómez-Gómez MM
- Subjects
- Animals, Carboplatin metabolism, Cisplatin metabolism, Kidney metabolism, Organoplatinum Compounds metabolism, Oxaliplatin, Rats, Reference Standards, Carboplatin toxicity, Cisplatin toxicity, Ink, Kidney drug effects, Organoplatinum Compounds toxicity, Printing
- Abstract
The study of the distribution of the cytostatic drugs cisplatin, carboplatin, and oxaliplatin along the kidney may help to understand their different nephrotoxic behavior. Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) allows the acquisition of trace element images in biological tissues. However, results obtained are affected by several variations concerning the sample matrix and instrumental drifts. In this work, an internal standardization method based on printing an Ir-spiked ink onto the surface of the sample has been developed to evaluate the different distributions and accumulation levels of the aforementioned drugs along the kidney of a rat model. A conventional ink-jet printer was used to print fresh sagittal kidney tissue slices of 4 μm. A reproducible and homogenous deposition of the ink along the tissue was observed. The ink was partially absorbed on top of the tissue. Thus, this approach provides a pseudo-internal standardization, due to the fact that the ablation sample and internal standard take place subsequently and not simultaneously. A satisfactory normalization of LA-ICP-MS bioimages and therefore a reliable comparison of the kidney treated with different Pt-based drugs were achieved even for tissues analyzed on different days. Due to the complete ablation of the sample, the transport of the ablated internal standard and tissue to the inductively coupled plasma-mass spectrometry (ICP-MS) is practically taking place at the same time. Pt accumulation in the kidney was observed in accordance to the dosages administered for each drug. Although the accumulation rate of cisplatin and oxaliplatin is high in both cases, their Pt distributions differ. The strong nephrotoxicity observed for cisplatin and the absence of such side effect in the case of oxaliplatin could explain these distribution differences. The homogeneous distribution of oxaliplatin in the cortical and medullar areas could be related with its higher affinity for cellular transporters such as MATE2-k.
- Published
- 2016
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15. Gadolinium-uptake by aquatic and terrestrial organisms-distribution determined by laser ablation inductively coupled plasma mass spectrometry.
- Author
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Lingott J, Lindner U, Telgmann L, Esteban-Fernández D, Jakubowski N, and Panne U
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- Animals, Chelating Agents, Daphnia growth & development, Female, Humans, Lasers, Lepidium sativum growth & development, Mass Spectrometry, Plants chemistry, Zygnematales growth & development, Contrast Media isolation & purification, Daphnia chemistry, Gadolinium isolation & purification, Lepidium sativum chemistry, Wastewater chemistry, Water Pollutants, Chemical isolation & purification, Zygnematales chemistry
- Abstract
Gadolinium (Gd) based contrast agents (CA) are used to enhance magnetic resonance imaging. As a consequence of excretion by patients and insufficient elimination in wastewater treatment plants they are detected in high concentrations in surface water. At present, little is known about the uptake of these species by living organisms in aquatic systems. Therefore the uptake of gadolinium containing chelates by plants and animals grown in exposed water or on soil irrigated with exposed water was investigated. For this purpose two types of plants were treated with two different contrast agents. The uptake of the Gd contrast agents was studied by monitoring the elemental distribution with laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). This technique allows the multi-elemental analysis of solid samples with high resolution and little sample preparation. The analysis of L. minor showed that the uptake of Gd correlated with the concentration of gadodiamide in the water. The higher the concentration in the exposed water, the larger the Gd signal in the LA-ICP-MS acquired image. Exposure time experiments showed saturation within one day. The L. minor had contact with the CAs through roots and fronds, whereas the L. sativum only showed uptake through the roots. These results show that an external absorption of the CA through the leaves of L. sativum was impossible. All the analyzed parts of the plant showed Gd signal from the CA; the highest being at the main vein of the leaf. It is shown that the CAs can be taken up from plants. Furthermore, the uptake and distribution of Gd in Daphnia magna were shown. The exposure via cultivation medium is followed by Gd signals on the skin and in the area of the intestine, while the uptake via exposed nutrition algae causes the significantly highest Gd intensities in the area of the intestine. Because there are hints of negative effects for human organism these findings are important as they show that Gd based CAs may reach the human food chain via plants and animals growing in contaminated water or plants growing in fields which are irrigated with surface water.
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- 2016
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16. Investigation of a combined microdroplet generator and pneumatic nebulization system for quantitative determination of metal-containing nanoparticles using ICPMS.
- Author
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Ramkorun-Schmidt B, Pergantis SA, Esteban-Fernández D, Jakubowski N, and Günther D
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- Drug Compounding, Particle Size, Suspensions, Time Factors, Chemistry Techniques, Analytical instrumentation, Chemistry Techniques, Analytical methods, Metal Nanoparticles analysis, Nebulizers and Vaporizers
- Abstract
In this work, a routinely applicable approach is presented to characterize metal NPs. Individual droplets generated from a microdroplet generator (MDG) were merged into an aerosol generated by a pneumatic nebulizer (PN) and introduced into an ICPMS. The MDG offers high transport efficiency of individual and discrete droplets and was therefore used to establish a calibration function for mass quantification of NPs which were introduced through the PN following the single particle procedure as described elsewhere. The major advantages of such a combined configuration include fast processing of large sample volumes, fast exchanges of different sample matrixes, and the calibration of the NP signal using traceable elemental standards, thus avoiding the need to use NP reference materials or other, not always thoroughly characterized, commercially available NPs. The transport efficiency of the sample introduction is calculated based on the fact that 100% of the calibrant reaches the plasma through the MDG, whereas for the PN a NP suspension containing a known number concentration is used. Alternatively, bulk analysis of the NP material allows transport efficiency determination without any additional information from reference NPs. With this method, we could determine the size of standard silver NPs at 60.4 ± 1.0 nm and 80.0 ± 1.4 nm, respectively, which agrees with the size ranges given by the supplier (60.8 ± 6.6 nm and 79.8 ± 5.4 nm). Furthermore, we were also able to determine the NPs number concentration of the sample (Ag/Au) with a deviation of 3.2% the expected value.
- Published
- 2015
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17. Novel approach for labeling of biopolymers with DOTA complexes using in situ click chemistry for quantification.
- Author
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He Y, Esteban-Fernández D, and Linscheid MW
- Subjects
- Alkynes chemistry, Click Chemistry, Peptides chemistry, Serum Albumin, Bovine chemistry, Trypsin chemistry, Azides chemistry, Biopolymers chemistry, Heterocyclic Compounds, 1-Ring chemistry, Lanthanoid Series Elements chemistry, Staining and Labeling methods
- Abstract
In this work, we present a two-step labeling approach for the efficient tagging with lanthanide-containing complexes. For this purpose, derivatization of the cysteine residues with an alkyne group acting as linker was done before the DOTA complex was introduced using in situ click chemistry. The characterization of this new methodology is presented including the optimization of the labeling process, demonstration of the quantitative capabilities using both electrospray ionization mass spectrometry (ESI-MS) and inductively coupled plasma mass spectrometry (ICP-MS) detection, and study of the fragmentation behavior of the labeled peptides by collision-induced dissociation (CID) for identification purposes. The results show that, in terms of labeling efficiency, this new methodology improves previously developed DOTA-based label strategies, such as MeCAT-maleimide (metal-coded affinity tag, MeCAT-Mal) and MeCAT-iodoacetamide (MeCAT-IA) reagents. The goal of reducing the steric hindrance caused by the voluminous DOTA complex was fulfilled allowing both, quantification and identification of labeled biopolymers., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
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18. A shotgun approach for the identification of platinum-protein complexes.
- Author
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Moraleja I, Moreno-Gordaliza E, Esteban-Fernández D, Mena ML, Linscheid MW, and Gómez-Gómez MM
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- Antineoplastic Agents blood, Antineoplastic Agents chemistry, Carboplatin blood, Cisplatin blood, Cisplatin chemistry, Humans, Male, Organoplatinum Compounds blood, Oxaliplatin, Peptides blood, Peptides chemistry, Platinum blood, Protein Binding, Carboplatin chemistry, Organoplatinum Compounds chemistry, Platinum chemistry, Proteins chemistry, Tandem Mass Spectrometry methods
- Abstract
A shotgun approach including peptide-based OFFGEL-isoelectric focusing (IEF) fractionation has been developed with the aim of improving the identification of platinum-binding proteins in biological samples. The method is based on a filter-aided sample preparation (FASP) tryptic digestion under denaturing and reducing conditions of cisplatin-, oxaliplatin-, and carboplatin-protein complexes, followed by OFFGEL-IEF separation of the peptides. Any risk of platinum loss is minimized throughout the procedure due to the removal of the reagents used after each stage of the FASP method and the absence of thiol-based reagents in the focusing buffer employed in the IEF separation. The platinum-peptide complexes stability after the FASP digestion and the IEF separation was confirmed by size exclusion chromatography-inductively coupled plasma-mass spectrometry (SEC-ICP-MS). The suitability of peptide-based OFFGEL-IEF fractionation for reducing the sample complexity for further nano-liquid chromatography-electrospray ionization-tandem mass spectrometry (nLC-ESI-MS/MS) analysis has been demonstrated, allowing the detection of platinum-containing peptides, with significantly lower abundance and ionization efficiency than unmodified peptides. nLC-MS/MS analysis of selected OFFGEL-IEF fractions from tryptic digests with different complexity degrees: standard human serum albumin (HSA), a mixture of five proteins (albumin, transferrin, carbonic anhydrase, myoglobin, and cytochrome-c) and human blood serum allowed the identification of several platinum-peptides from cisplatin-HSA. Cisplatin-binding sites in HSA were elucidated from the MS/MS spectra and assessed considering the protein three-dimensional structure. Most of the potential superficial binding sites available on HSA were identified for all the samples, including a biologically relevant cisplatin-cross-link of two protein domains, demonstrating the capabilities of the methodology.
- Published
- 2015
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19. Bridging the gap between molecular and elemental mass spectrometry: higher energy collisional dissociation (HCD) revealing elemental information.
- Author
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Esteban-Fernández D, El-Khatib AH, Moraleja I, Gómez-Gómez MM, and Linscheid MW
- Abstract
Molecular mass spectrometry has been applied to simultaneously obtain molecular and elemental information from metal-containing species. Energy tuning of the higher-energy collision dissociation (HCD) fragmentation cell allows the controlled production of typical peptide fragments or elemental reporter ions informing about the metallic content of the analyzed species. Different instrumental configurations and fragmentation techniques have been tested, and the efficiency extracting the elemental information has been compared. HCD fragmentation operating at very high energy led to the best results. Platinum, lanthanides, and iodine reporter ions from peptides interacting with cisplatin, peptides labeled with lanthanides-MeCAT-IA, and iodinated peptides, respectively, were obtained. The possibility to produce abundant molecular and elemental ions in the same analysis simplifies the correlation between both signals and open pathways in metallomics studies enabling the specific tracking of metal-containing species. The proposed approach has been successfully applied to in solution standards and complex samples. Moreover, interesting preliminary MALDI-imaging experiments have been performed showing similar metal distribution compared to laser ablation (LA)-ICPMS.
- Published
- 2015
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20. Identification of the major ACE-inhibitory peptides produced by enzymatic hydrolysis of a protein concentrate from cuttlefish wastewater.
- Author
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Amado IR, Vázquez JA, González P, Esteban-Fernández D, Carrera M, and Piñeiro C
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- Algorithms, Angiotensin-Converting Enzyme Inhibitors isolation & purification, Animals, Chromatography, High Pressure Liquid, Decapodiformes chemistry, Dose-Response Relationship, Drug, Food Industry, Hydrolysis, Molecular Weight, Nonlinear Dynamics, Peptides isolation & purification, Spectrometry, Mass, Electrospray Ionization, Ultrafiltration, Angiotensin-Converting Enzyme Inhibitors pharmacology, Decapodiformes metabolism, Industrial Waste analysis, Peptides pharmacology, Wastewater analysis
- Abstract
The aim of this work was the purification and identification of the major angiotensin converting enzyme (ACE) inhibitory peptides produced by enzymatic hydrolysis of a protein concentrate recovered from a cuttlefish industrial manufacturing effluent. This process consisted on the ultrafiltration of cuttlefish softening wastewater, with a 10 kDa cut-off membrane, followed by the hydrolysis with alcalase of the retained fraction. Alcalase produced ACE inhibitors reaching the highest activity (IC₅₀ = 76.8 ± 15.2 μg mL⁻¹) after 8 h of proteolysis. Sequential ultrafiltration of the 8 h hydrolysate with molecular weight cut-off (MWCO) membranes of 10 and 1 kDa resulted in the increased activity of each permeate, with a final IC₅₀ value of 58.4 ± 4.6 μg mL⁻¹. Permeate containing peptides lower than 1 kDa was separated by reversed-phase high performance liquid chromatography (RP-HPLC). Four fractions (A-D) with potent ACE inhibitory activity were isolated and their main peptides identified using high performance liquid chromatography coupled to an electrospray ion trap Fourier transform ion cyclotron resonance-mass spectrometer (HPLC-ESI-IT-FTICR) followed by comparison with databases and de novo sequencing. The amino acid sequences of the identified peptides contained at least one hydrophobic and/or a proline together with positively charged residues in at least one of the three C-terminal positions. The IC₅₀ values of the fractions ranged from 1.92 to 8.83 μg mL⁻¹, however this study fails to identify which of these peptides are ultimately responsible for the potent antihypertensive activity of these fractions.
- Published
- 2014
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21. Inductively coupled plasma mass spectrometry-based method for the specific quantification of sulfenic acid in peptides and proteins.
- Author
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El-Khatib AH, Esteban-Fernández D, and Linscheid MW
- Subjects
- Peptides chemistry, Protein Structure, Secondary, Proteins chemistry, Spectrometry, Mass, Electrospray Ionization methods, Spectrophotometry, Atomic methods, Mass Spectrometry methods, Peptides analysis, Proteins analysis, Sulfenic Acids analysis
- Abstract
A robust ICPMS-based method is introduced to obtain relative and absolute quantification of sulfenic acid (SA) in peptides and proteins. A new metal-containing reagent (Ln-DOTA-Dimedone) devised to react specifically with SA has been developed. The lanthanide-containing metal-coded affinity tag (Ln-MeCAT) was used to quantify thiol residues. We presented two approaches which allow the parallel and consecutive determination of SA and thiols in peptide and protein samples. The high sensitivity, structure-independent signal, and multiplexing capabilities of ICPMS together with the specificity of Ln-DOTA-Dimedone and Ln-MeCAT toward sulfenic acid and thiol residues, respectively, allow the characterization of various biological states and offer closer insight onto thiol-sulphenic acid equilibria which are involved in intracellular redox-mediated events altering structure and function of proteins in important diseases.
- Published
- 2014
- Full Text
- View/download PDF
22. On the complexity and dynamics of in vivo Cisplatin-DNA adduct formation using HPLC/ICP-MS.
- Author
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Ziehe M, Esteban-Fernández D, Hochkirch U, Thomale J, and Linscheid MW
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- Animals, Cattle, Cisplatin analysis, DNA chemistry, DNA Adducts analysis, DNA Adducts biosynthesis, Liver chemistry, Liver metabolism, Male, Mice, Mice, Inbred C57BL, Chromatography, High Pressure Liquid methods, Cisplatin chemistry, DNA Adducts chemistry, Mass Spectrometry methods
- Abstract
In this work we present a methodology to measure the complex adduct spectrum caused by the interaction of Cisplatin with DNA. By using an optimized DNA digestion procedure we were able to show that the adduct spectrum in in vivo duplex DNA is much more complex than described so far. For the first time a high abundance of interstrand adducts has been detected by using HPLC/ESI-MS. These adducts could play a key role in the DNA repair mechanisms and the development of cellular resistance to Cisplatin. By species-unspecific isotope dilution analysis HPLC/ICP-MS measurements, we were able to study the kinetics of adduct formation. With these experiments we proved that after the initial formation of adducts a rearrangement occurs on the DNA-strands leading to significant changes in adduct patterns over time. Furthermore, the parameters of the species-unspecific isotope dilution analysis were optimized to allow measurements of specific adducts in the DNA of Cisplatin exposed cells.
- Published
- 2012
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23. Double spike isotope dilution GC-ICP-MS for evaluation of mercury species transformation in real fish samples using ultrasound-assisted extraction.
- Author
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Esteban-Fernández D, Mirat M, de la Hinojosa MI, and Alonso JI
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- Animals, Fish Products analysis, Food Contamination analysis, Mercury Isotopes analysis, Methylmercury Compounds analysis, Ultrasonics methods, Chemical Fractionation instrumentation, Fishes, Food Analysis methods, Gas Chromatography-Mass Spectrometry methods, Mercury analysis
- Abstract
Sample preparation continues being a key factor to obtain fast and reliable quantification of Hg species. Assisted procedures enhance the efficiency and reduce the extraction time; however, collateral species transformations have been observed. Moreover, differential interconversions have been observed even between similar matrixes, which introduce an important uncertainty for real sample analysis. Trying to minimize Hg species transformations, we have tested a soft ultrasound-assisted extraction procedure. Species quantification and transformations have been evaluated using double spike isotope dilution analysis (IDA) together with gas chromatography inductively coupled plasma mass spectrometry (GC-ICP-MS) for a CRM material (Tort-2) and shark and swordfish muscle samples. Optimum extraction solution and sonication time led to quantitative extraction and accurate determination of MeHg and IHg in a short time, although different behaviors regarding species preservation were observed depending on the sample. Negligible species transformations were observed in the analysis of the CRM, while a small but significant demethylation factor was observed in the case of real samples. In comparison with other extraction procedures, species transformations became smaller, and fewer differences between fish species were found. Similar results were obtained for fresh and lyophilized samples of both fish samples, which permit one to analyze the fresh sample directly and save time in the sample preparation step. The high grade of species preservation and the affordability of the extraction procedure allow one to obtain accurate determinations even for routine laboratories using quantification techniques, which do not estimate species transformations.
- Published
- 2012
- Full Text
- View/download PDF
24. Dual labeling of biomolecules using MeCAT and DOTA derivatives: application to quantitative proteomics.
- Author
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El-Khatib AH, Esteban-Fernández D, and Linscheid MW
- Subjects
- Amines chemistry, Amino Acid Sequence, Animals, Cattle, Chromatography, Liquid, Cysteine chemistry, Humans, Molecular Sequence Data, Spectrometry, Mass, Electrospray Ionization methods, Staining and Labeling methods, Sulfhydryl Compounds chemistry, Affinity Labels chemistry, Lanthanoid Series Elements chemistry, Peptides chemistry, Proteomics methods, Serum Albumin chemistry, Serum Albumin, Bovine chemistry, Succinimides chemistry
- Abstract
In this study, single and dual labeling of primary amino and thiol groups of target peptides is presented as a proof of concept. The proposed method allows flexible, independent and sequential labeling of the mentioned residues using lanthanides introduced via DOTA-complexes (1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid). The efficiency of the method was optimized using cysteine-containing standard peptides and then applied to bovine serum albumin (BSA) and human serum albumin (HSA) to demonstrate qualitative and quantitative aspects of this strategy. For amino labeling, cysteinyl peptides were immobilized on Sepharose-6B resin and labeled with DOTA-NHS ester followed by metallation with lanthanides. Thiol labeling was carried out using lanthanide-containing metal-coded affinity tags (MeCAT) after elution of peptides from the resin. Complete dual labeling of the standard peptides was demonstrated by liquid chromatography electrospray ionization mass spectrometry, whereas more than 80% of the detected peptides of BSA and HSA were completely dual-labeled. Parallel detection by LC coupled to inductively coupled plasma mass spectrometry (ICP-MS) delivered reliable quantitative information. Thus, the versatile lanthanide choice in both labeling steps allowed estimating primary amino and thiol stoichiometries for the studied samples using different lanthanides. On the other hand, enhancement of ICP-MS signal was achieved as expected when all positions were labeled with the same lanthanide. Finally, linear calibrations of the signal for most of the labeled peptides by standard additions of digested BSA showed a suitable behaviour for quantitative applications and demonstrated the pre-concentration capability of the employed resin.
- Published
- 2012
- Full Text
- View/download PDF
25. MeCAT peptide labeling for the absolute quantification of proteins by 2D-LC-ICP-MS.
- Author
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Esteban-Fernández D, Ahrends R, and Linscheid MW
- Subjects
- Animals, Calibration, Cations chemistry, Cattle, Chickens, Humans, Peptide Fragments chemistry, Proteins chemistry, Trypsin chemistry, Chromatography, Ion Exchange methods, Mass Spectrometry methods, Peptide Fragments analysis, Proteins analysis
- Abstract
Metal-Coded Affinity Tags (MeCAT) reagents were devised for the absolute quantification of labeled proteins and peptides using inductively coupled plasma mass spectrometry (ICP-MS). After the recent publication of quantification approaches for digested proteins, this work presents a multidimensional strategy for the application of MeCAT to samples which require higher chromatographic resolution. Two-dimensional separations based on strong cation exchange (SCX) and reversed-phase (RP) chromatography, were used for the quantification of lysozyme, bovine serum albumin and transferrin after tryptic digestion. The elution protocols were optimized to improve the resolution of the MeCAT-labeled peptides which led to faster elutions in SCX and longer retention times in RP compared with unlabeled peptides. The optimized method provided enough resolution for the samples analyzed. Peptides losses during the whole procedure were studied. Although recoveries of greater than 90% were found in the RP dimension, important global losses in the two-dimensional offline approach forced us to use specific internal standards, in this case MeCAT-labeled standard peptides. External calibration and label-specific isotope dilution analysis (IDA) were tested and compared as possible quantification techniques. While both techniques showed accurate and precise determinations, the label-specific IDA technique resulted in more straightforward measurements and more affordable external calibrations. Finally, simultaneous quantification of three different samples labeled with different lanthanides was successfully performed demonstrating the potential of MeCAT combined with ICP-MS for multiplexing. Electrospray ionization mass spectrometry techniques provided the structural information needed for the identification of the labeled species., (Copyright © 2012 John Wiley & Sons, Ltd.)
- Published
- 2012
- Full Text
- View/download PDF
26. Elemental bioimaging in kidney by LA-ICP-MS as a tool to study nephrotoxicity and renal protective strategies in cisplatin therapies.
- Author
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Moreno-Gordaliza E, Giesen C, Lázaro A, Esteban-Fernández D, Humanes B, Cañas B, Panne U, Tejedor A, Jakubowski N, and Gómez-Gómez MM
- Subjects
- Animals, Cilastatin pharmacology, Copper chemistry, Female, Kidney Cortex pathology, Kidney Tubules, Proximal pathology, Mass Spectrometry instrumentation, Platinum analysis, Rats, Rats, Wistar, Zinc chemistry, Antineoplastic Agents toxicity, Cisplatin toxicity, Kidney pathology, Mass Spectrometry methods
- Abstract
A laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS)-based methodology is presented for Pt, Cu, and Zn bioimaging on whole kidney 3 μm sagittal sections from rats treated with pharmacological doses of cisplatin, which were sacrificed once renal damage had taken place. Pt turned out to accumulate in the kidney cortex and corticomedullary junction, corresponding to areas where the proximal tubule S3 segments (the most sensitive cells to cisplatin nephrotoxicity) are located. This demonstrates the connection between platinum accumulation and renal damage proved by histological examination of HE-stained sections and evaluation of serum and urine biochemical parameters. Cu and Zn distribution maps revealed a significant displacement in cells by Pt, as compared to control tissues. A dramatic decrease in the Pt accumulation in the cortex was observed when cilastatin was coadministered with cisplatin, which can be related to its nephroprotective effect. Excellent imaging reproducibility, sensitivity (LOD 50 fg), and resolution (down to 8 μm) were achieved, demonstrating that LA-ICP-MS can be applied as a microscopic metal detector at cellular level in certain tissues. A simple and quick approach for the estimation of Pt tissue levels was proposed, based on tissue spiking., (© 2011 American Chemical Society)
- Published
- 2011
- Full Text
- View/download PDF
27. Absolute protein quantification by LC-ICP-MS using MeCAT peptide labeling.
- Author
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Esteban-Fernández D, Scheler C, and Linscheid MW
- Subjects
- Animals, Cattle, Chickens, Mass Spectrometry, Muramidase metabolism, Peptides chemistry, Metals chemistry, Muramidase analysis, Peptides analysis, Serum Albumin, Bovine analysis, Staining and Labeling methods
- Abstract
Nowadays, the most common strategies used in quantitative proteomics are based on isotope-coded labeling followed by specific molecule mass spectrometry. The implementation of inductively coupled plasma mass spectrometry (ICP-MS) for quantitative purposes can solve important drawbacks such as lack of sensitivity, structure-dependent responses, or difficulties in absolute quantification. Recently, lanthanide-containing labels as metal-coded affinity tag (MeCAT) reagents have been introduced, increasing the interest and scope of elemental mass spectrometry techniques for quantitative proteomics. In this work one of the first methodologies for absolute quantification of peptides and proteins using MeCAT labeling is presented. Liquid chromatography (LC) interfaced to ICP-MS has been used to separate and quantify labeled peptides while LC coupled to electrospray ionization mass spectrometry served for identification tasks. Synthetic-labeled peptides were used as standards to calibrate the response of the detector with compounds as close as possible to the target species. External calibration was employed as a quantification technique. The first step to apply this approach was MeCAT-Eu labeling and quantification by isotope dilution ICP-MS of the selected peptides. The standards were mixed in different concentrations and subjected to reverse-phase chromatography before ICP-MS detection to consider the column effect over the peptides. Thus, the prepared multi-peptide mix allowed a calibration curve to be obtained in a single chromatographic run, correcting possible non-quantitative elutions of the peptides from the column. The quantification strategy was successfully applied to other labeled peptides and to standard proteins such as digested lysozyme and bovine serum albumin.
- Published
- 2011
- Full Text
- View/download PDF
28. Analytical methodologies for metallomics studies of antitumor Pt-containing drugs.
- Author
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Esteban-Fernández D, Moreno-Gordaliza E, Cañas B, Palacios MA, and Gómez-Gómez MM
- Subjects
- Animals, Humans, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Drug Discovery methods, Organoplatinum Compounds chemistry, Organoplatinum Compounds pharmacology
- Abstract
Pt-containing drugs are nowadays essential components in cancer chemotherapy. However, drug resistance and side effects limit the efficiency of the treatments. In order to improve the response to Pt-based drugs, different administration strategies or new Pt-compounds have been developed with little success. The reason for this failure could be that the mechanism of action of these drugs is not completely understood. In this way, metallomics studies may contribute to clarify the interactions of Pt-containing drugs within the organism. This review is mainly focused on the role of Analytical Chemistry on the study of the interactions between Pt-based drugs and biomolecules. A summary of the analytical techniques and the most common sample treatment procedures currently used in metallomics studies of these drugs is presented. Both are of paramount importance to study these complex samples preserving the drug-biomolecule interaction. Separation and detection techniques must be carefully selected in order to achieve the intended goals. The use of multidimensional hyphenated techniques is usually necessary for a better understanding of the Pt-based drugs interactions in the organism. An overview of Pt-drugs biological interactions is presented, considering the different sample matrices and the drugs course through the organism. Samples analysed in the included studies are blood, urine, cell cytosol, DNA as well as the drugs themselves and their derivatives. However, most of these works are based on in vitro experiments or incubations of standards, leading in some cases to contradictory results depending on the experimental conditions used. Though in vivo experiments represent a great challenge due to the high complexity and the low concentrations of the Pt-adducts in real samples, these studies must be undertaken to get a deeper understanding of the real interactions concerning Pt-containing drugs.
- Published
- 2010
- Full Text
- View/download PDF
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