7 results on '"Estépar, Rubén San José"'
Search Results
2. Silent Airway Mucus Plugs in COPD and Clinical Implications
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Mettler, Sofia K., Nath, Hrudaya P., Grumley, Scott, Orejas, José L., Dolliver, Wojciech R., Nardelli, Pietro, Yen, Andrew C., Kligerman, Seth J., Jacobs, Kathleen, Manapragada, Padma P., Abozeed, Mostafa, Aziz, Muhammad Usman, Zahid, Mohd, Ahmed, Asmaa N., Terry, Nina L., Elalami, Rim, Estépar, Ruben San José, Sonavane, Sushilkumar, Billatos, Ehab, Wang, Wei, Estépar, Raúl San José, Richards, Jeremy B., Cho, Michael H., and Diaz, Alejandro A.
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- 2024
- Full Text
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3. Accurate Point Cloud Registration with Robust Optimal Transport
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Shen, Zhengyang, Feydy, Jean, Liu, Peirong, Curiale, Ariel Hernán, Estepar, Ruben San Jose, Estepar, Raul San Jose, and Niethammer, Marc
- Subjects
Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computational Geometry ,I.2.10 - Abstract
This work investigates the use of robust optimal transport (OT) for shape matching. Specifically, we show that recent OT solvers improve both optimization-based and deep learning methods for point cloud registration, boosting accuracy at an affordable computational cost. This manuscript starts with a practical overview of modern OT theory. We then provide solutions to the main difficulties in using this framework for shape matching. Finally, we showcase the performance of transport-enhanced registration models on a wide range of challenging tasks: rigid registration for partial shapes; scene flow estimation on the Kitti dataset; and nonparametric registration of lung vascular trees between inspiration and expiration. Our OT-based methods achieve state-of-the-art results on Kitti and for the challenging lung registration task, both in terms of accuracy and scalability. We also release PVT1010, a new public dataset of 1,010 pairs of lung vascular trees with densely sampled points. This dataset provides a challenging use case for point cloud registration algorithms with highly complex shapes and deformations. Our work demonstrates that robust OT enables fast pre-alignment and fine-tuning for a wide range of registration models, thereby providing a new key method for the computer vision toolbox. Our code and dataset are available online at: https://github.com/uncbiag/robot., Comment: Accepted in NeurIPS 2021
- Published
- 2021
4. CT imaging determinants of persistent hypoxemia in acute intermediate-risk pulmonary embolism
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Hassan, Syed Moin, Nardelli, Pietro, Minhas, Jasleen K., Ash, Samuel Y., Estépar, Rubén San José, Antkowiak, MaryEllen C., Badlam, Jessica B., Piazza, Gregory, Estépar, Raúl San José, Washko, George R., and Rahaghi, Farbod N.
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- 2023
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5. COPD:pulmonary vascular volume associated with cardiac structure and function
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Duus, Lisa Steen, Vesterlev, Ditte, Nielsen, Anne Bjerg, Lassen, Mats Højbjerg, Sivapalan, Pradeesh, Ulrik, Charlotte Suppli, Lapperre, Therese, Browatzki, Andrea, Estépar, Rubén San José, Nardelli, Pietro, Jensen, Jens Ulrik Staehr, Estépar, Raúl San José, Biering-Sørensen, Tor, Duus, Lisa Steen, Vesterlev, Ditte, Nielsen, Anne Bjerg, Lassen, Mats Højbjerg, Sivapalan, Pradeesh, Ulrik, Charlotte Suppli, Lapperre, Therese, Browatzki, Andrea, Estépar, Rubén San José, Nardelli, Pietro, Jensen, Jens Ulrik Staehr, Estépar, Raúl San José, and Biering-Sørensen, Tor
- Abstract
Background: Early recognition of cardiac dysfunction in patients with chronic obstructive pulmonary disease (COPD) may prevent future cardiac impairment and improve prognosis. Quantitative assessment of subsegmental and segmental vessel volume by Computed Tomographic (CT) imaging can provide a surrogate of pulmonary vascular remodeling. We aimed to examine the relationship between lung segmental- and subsegmental vessel volume, and echocardiographic measures of cardiac structure and function in patients with COPD. Methods: We studied 205 participants with COPD, included in a large cohort study of cardiovascular disease in COPD patients. Participants had an available CT scan and echocardiogram. Artificial intelligence (AI) algorithms calculated the subsegmental vessel fraction as the vascular volume in vessels below 10 mm2 in cross-sectional area, indexed to total intrapulmonary vessel volume. Linear regressions were conducted, and standardized ß-coefficients were calculated. Scatterplots were created to visualize the continuous correlations between the vessel fractions and echocardiographic parameters. Results: We found that lower subsegmental vessel fraction and higher segmental vessel volume were correlated with higher left ventricular (LV) mass, LV diastolic dysfunction, and inferior vena cava (IVC) dilatation. Subsegmental vessel fraction was correlated with right ventricular (RV) remodeling, while segmental vessel fraction was correlated with higher pulmonary pressure. Measures of LV mass and right atrial pressure displayed the strongest correlations with pulmonary vasculature measures. Conclusion: Pulmonary vascular remodeling in patients with COPD, may negatively affect cardiac structure and function. AI-identified remodeling in pulmonary vasculature may provide a tool for early identification of COPD patients at higher risk for cardiac impairment.
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- 2024
6. CNNs trained with adult data are useful in pediatrics. A pneumonia classification example.
- Author
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Rollan-Martinez-Herrera, Maria, Díaz, Alejandro A., Estépar, Rubén San José, Sanchez-Ferrero, Gonzalo Vegas, Ross, James C., Estépar, Raúl San José, and Nardelli, Pietro
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CONVOLUTIONAL neural networks ,CHILD patients ,ADULTS ,DEEP learning ,IMAGE segmentation ,PNEUMONIA - Abstract
Background and objectives: The scarcity of data for training deep learning models in pediatrics has prompted questions about the feasibility of employing CNNs trained with adult images for pediatric populations. In this work, a pneumonia classification CNN was used as an exploratory example to showcase the adaptability and efficacy of such models in pediatric healthcare settings despite the inherent data constraints. Methods: To develop a curated training dataset with reduced biases, 46,947 chest X-ray images from various adult datasets were meticulously selected. Two preprocessing approaches were tried to assess the impact of thoracic segmentation on model attention outside the thoracic area. Evaluation of our approach was carried out on a dataset containing 5,856 chest X-rays of children from 1 to 5 years old. Results: An analysis of attention maps indicated that networks trained with thorax segmentation placed less attention on regions outside the thorax, thus eliminating potential bias. The ensuing network exhibited impressive performance when evaluated on an adult dataset, achieving a pneumonia discrimination AUC of 0.95. When tested on a pediatric dataset, the pneumonia discrimination AUC reached 0.82. Conclusions: The results of this study show that adult-trained CNNs can be effectively applied to pediatric populations. This could potentially shift focus towards validating adult models over pediatric population instead of training new CNNs with limited pediatric data. To ensure the generalizability of deep learning models, it is important to implement techniques aimed at minimizing biases, such as image segmentation or low-quality image exclusion. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Functional-Consistent CycleGAN for CT to Iodine Perfusion Map Translation.
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Nardelli P, Estépar RSJ, Rahaghi FN, and Estépar RSJ
- Abstract
Image-to-image translation from a source to a target domain by means of generative adversarial neural network (GAN) has gained a lot of attention in the medical imaging field due to their capability to learn the mapping characteristics between different modalities. CycleGAN has been proposed for image-to-image translation with unpaired images by means of a cycle-consistency loss function, which is optimized to reduce the difference between the image reconstructed from the synthetically-generated domain and the original input. However, CycleGAN inherently implies that the mapping between both domains is invertible, i.e., given a mapping G (forward cycle) from domain A to B, there is a mapping F (backward cycle) that is the inverse of G. This is assumption is not always true. For example, when we want to learn functional activity from structural modalities. Although it is well-recognized the relation between structure and function in different physiological processes, the problem is not invertible as the original modality cannot be recovered from a given functional response. In this paper, we propose a functional-consistent CycleGAN that leverages the usage of a proxy structural image in a third domain, shared between source and target, to help the network learn fundamental characteristics while being cycle consistent. To demonstrate the strength of the proposed strategy, we present the application of our method to estimate iodine perfusion maps from contrast CT scans, and we compare the performance of this technique to a traditional CycleGAN framework.
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- 2020
- Full Text
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