David Meierhofer, Gerrit Kürschner, Hermann-Georg Holzhütter, Qingzhou Zhang, Sascha Bulik, Yi Xiao, Mohan Babu, Klaus Jung, Rosanna Clima, Jonas Busch, Nikolaus Berndt, Giuseppe Gasparre, Ergin Kilic, Marcella Attimonelli, Kürschner, Gerrit, Zhang, Qingzhou, Clima, Rosanna, Xiao, Yi, Felix Busch, Jona, Kilic, Ergin, Jung, Klau, Berndt, Nikolau, Bulik, Sascha, Holzhütter, Hermann-georg, Gasparre, Giuseppe, Attimonelli, Marcella, Babu, Mohan, and Meierhofer, David
// Gerrit Kurschner 1, 2, * , Qingzhou Zhang 3, * , Rosanna Clima 4, 5 , Yi Xiao 1, 6 , Jonas Felix Busch 7 , Ergin Kilic 8 , Klaus Jung 7, 9 , Nikolaus Berndt 10 , Sascha Bulik 10 , Hermann-Georg Holzhutter 10 , Giuseppe Gasparre 5 , Marcella Attimonelli 4 , Mohan Babu 3 and David Meierhofer 1 1 Max Planck Institute for Molecular Genetics, Mass Spectrometry Facility, Berlin, Germany 2 Technical University of Berlin, Institute of Bioanalytics, Department of Biotechnology, Berlin, Germany 3 University of Regina, Department of Biochemistry, Regina, Canada 4 University of Bari, Department of Biosciences, Biotechnology and Biopharmaceutics, Bari, Italy 5 Department of Medical and Surgical Sciences-DIMEC, Medical Genetics Unit, University of Bologna, Bologna, Italy 6 Freie Universitat Berlin, Fachbereich Biologie, Chemie, Pharmazie, Berlin, Germany 7 University Hospital Charite, Department of Urology, Berlin, Germany 8 University Hospital Charite, Institute of Pathology, Berlin, Germany 9 Berlin Institute for Urologic Research, Berlin, Germany 10 Charite University Medicine Berlin, Institute of Biochemistry Computational Systems Biochemistry Group, Berlin, Germany * These authors have contributed equally to this work Correspondence to: David Meierhofer, email: Meierhof@molgen.mpg.de Mohan Babu, email: mohan.babu@uregina.ca Keywords: renal oncocytoma; complex I deficiency; glutathione metabolism; mtDNA mutation Received: July 10, 2017 Accepted: September 21, 2017 Published: November 11, 2017 ABSTRACT Renal oncocytomas are rare benign tumors of the kidney and characterized by a deficient complex I (CI) enzyme activity of the oxidative phosphorylation (OXPHOS) system caused by mitochondrial DNA (mtDNA) mutations. Yet, little is known about the underlying molecular mechanisms and alterations of metabolic pathways in this tumor. We compared renal oncocytomas with adjacent matched normal kidney tissues on a global scale by multi-omics approaches, including whole exome sequencing (WES), proteomics, metabolomics, and metabolic pathway simulation. The abundance of proteins localized to mitochondria increased more than 2-fold, the only exception was a strong decrease in the abundance for CI subunits that revealed several pathogenic heteroplasmic mtDNA mutations by WES. We also observed renal oncocytomas to dysregulate main metabolic pathways, shunting away from gluconeogenesis and lipid metabolism. Nevertheless, the abundance of energy carrier molecules such as NAD + , NADH, NADP, ATP, and ADP were significantly higher in renal oncocytomas. Finally, a substantial 5000-fold increase of the reactive oxygen species scavenger glutathione can be regarded as a new hallmark of renal oncocytoma. Our findings demonstrate that renal oncocytomas undergo a metabolic switch to eliminate ATP consuming processes to ensure a sufficient energy supply for the tumor.