243 results on '"Erb-Downward, John R."'
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2. AMAISE: a machine learning approach to index-free sequence enrichment
3. Lung microbiota predict chronic rejection in healthy lung transplant recipients: a prospective cohort study
4. Concepts, Tools, and Methodologic Considerations for Lung Microbiome Research
5. Microbes Are Associated with Host Innate Immune Response in Idiopathic Pulmonary Fibrosis
6. Loss of Airway Phylogenetic Diversity Is Associated with Clinical and Pathobiological Markers of Disease Development in Chronic Obstructive Pulmonary Disease.
7. The Lung Microbiome Predicts Mortality and Response to Azithromycin in Lung Transplant Recipients with Chronic Rejection.
8. SquiggleNet: real-time, direct classification of nanopore signals
9. Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort
10. Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
11. Understanding the role of the microbiome in chronic obstructive pulmonary disease: principles, challenges, and future directions
12. Lung Microbiota and Metabolites Collectively Associate with Clinical Outcomes in Milder Stage Chronic Obstructive Pulmonary Disease
13. Bacterial Dissemination to the Brain in Sepsis
14. Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics
15. Reply: Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles
16. SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data
17. Toll-Interacting Protein and Altered Lung Microbiota in Idiopathic Pulmonary Fibrosis
18. Complete Genome Sequences of Pseudomonas lundensis Strains M101 and M105, Isolated from 1% Pasteurized Milk
19. Toll-like receptors, environmental caging, and lung dysbiosis
20. Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease
21. Intraalveolar Catecholamines and the Human Lung Microbiome
22. Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography
23. The role of Gr-1+ cells and tumour necrosis factor-α signalling during Clostridium difficile colitis in mice
24. Rapid Identification of Pathogens Associated With Ventilator-Associated Pneumonia By Nanopore Sequencing
25. High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
26. Additional file 2 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
27. Additional file 2 of SquiggleNet: real-time, direct classification of nanopore signals
28. Additional file 1 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
29. Additional file 1 of SquiggleNet: real-time, direct classification of nanopore signals
30. Additional file 3 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing
31. Significance of the Microbiome in Chronic Obstructive Pulmonary Disease
32. Real-Time, Direct Classification of Nanopore Signals with SquiggleNet
33. Acute infection of mice with Clostridium difficile leads to eIF2α phosphorylation and pro-survival signalling as part of the mucosal inflammatory response
34. The Microbiota in Respiratory Disease
35. Measurement of Short-Chain Fatty Acids in Respiratory Samples: Keep Your Assay above the Water Line
36. Lung and gut microbiota are altered by hyperoxia and contribute to oxygen-induced lung injury in mice
37. Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis
38. Radiographic Honeycombing and Altered Lung Microbiota in Patients with Idiopathic Pulmonary Fibrosis
39. The role of laccase in prostaglandin production by Cryptococcus neoformans
40. Role of oxylipins and other lipid mediators in fungal pathogenesis
41. Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis
42. Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation
43. Gut microbiota relationships to lung function and adult asthma phenotype: a pilot study
44. The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity
45. Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans
46. Bacterial Topography of the Healthy Human Lower Respiratory Tract
47. Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis.
48. Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation.
49. Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome
50. The Microbiome and the Respiratory Tract
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