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1. Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania

6. Alignathon: A competitive assessment of whole-genome alignment methods

9. Double aortic arch.

10. REPORT OF TWO CASES WITH UNUSUAL CALCAREOUS DEPOSITS

17. Highly significant improvement of protein sequence alignments with AlphaFold2.

18. Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania.

19. Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation.

22. Amalgams: data-driven amalgamation for the dimensionality reduction of compositional data.

23. Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection.

24. Large multiple sequence alignments with a root-to-leaf regressive method.

25. A field guide for the compositional analysis of any-omics data.

26. Protocol for Measuring Compulsive-like Feeding Behavior in Mice.

27. Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards.

28. Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome.

29. Pergola: Boosting Visualization and Analysis of Longitudinal Data by Unlocking Genomic Analysis Tools.

30. Understanding sequencing data as compositions: an outlook and review.

31. Time-course and dynamics of obesity-related behavioral changes induced by energy-dense foods in mice.

32. Extinction and reinstatement of an operant responding maintained by food in different models of obesity.

33. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.

34. Combined Treatment With Environmental Enrichment and (-)-Epigallocatechin-3-Gallate Ameliorates Learning Deficits and Hippocampal Alterations in a Mouse Model of Down Syndrome.

35. Multiple sequence alignment modeling: methods and applications.

36. How should we measure proportionality on relative gene expression data?

37. Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

38. Principal Component Analysis of the Effects of Environmental Enrichment and (-)-epigallocatechin-3-gallate on Age-Associated Learning Deficits in a Mouse Model of Down Syndrome.

39. Third Report on Chicken Genes and Chromosomes 2015.

40. Alignathon: a competitive assessment of whole-genome alignment methods.

41. T-Coffee: Tree-based consistency objective function for alignment evaluation.

42. Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations.

43. Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

44. MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.

45. Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

46. BlastR--fast and accurate database searches for non-coding RNAs.

47. Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters.

48. The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion.

49. Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

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