37 results on '"Enrico Balducci"'
Search Results
2. Arginine-specific mono ADP-ribosylation in vitro of antimicrobial peptides by ADP-ribosylating toxins.
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Marta Castagnini, Monica Picchianti, Eleonora Talluri, Massimiliano Biagini, Mariangela Del Vecchio, Paolo Di Procolo, Nathalie Norais, Vincenzo Nardi-Dei, and Enrico Balducci
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Medicine ,Science - Abstract
Among the several toxins used by pathogenic bacteria to target eukaryotic host cells, proteins that exert ADP-ribosylation activity represent a large and studied family of dangerous and potentially lethal toxins. These proteins alter cell physiology catalyzing the transfer of the ADP-ribose unit from NAD to cellular proteins involved in key metabolic pathways. In the present study, we tested the capability of four of these toxins, to ADP-ribosylate α- and β- defensins. Cholera toxin (CT) from Vibrio cholerae and heat labile enterotoxin (LT) from Escherichia coli both modified the human α-defensin (HNP-1) and β- defensin-1 (HBD1), as efficiently as the mammalian mono-ADP-ribosyltransferase-1. Pseudomonas aeruginosa exoenzyme S was inactive on both HNP-1 and HBD1. Neisseria meningitidis NarE poorly recognized HNP-1 as a substrate but it was completely inactive on HBD1. On the other hand, HNP-1 strongly influenced NarE inhibiting its transferase activity while enhancing auto-ADP-ribosylation. We conclude that only some arginine-specific ADP-ribosylating toxins recognize defensins as substrates in vitro. Modifications that alter the biological activities of antimicrobial peptides may be relevant for the innate immune response. In particular, ADP-ribosylation of antimicrobial peptides may represent a novel escape mechanism adopted by pathogens to facilitate colonization of host tissues.
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- 2012
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3. CagL from Helicobacter pylori has ADP-ribosylation activity and exerts partial protective efficacy in mice
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Paolo Ruggiero, Maria Scarselli, Enrico Balducci, Laura Pancotto, and Eleonora Talluri
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0301 basic medicine ,Biophysics ,Biochemistry ,Helicobacter Infections ,Microbiology ,law.invention ,Pathogenesis ,Mice ,03 medical and health sciences ,ADP-Ribosylation ,NAD+ Nucleosidase ,Bacterial Proteins ,law ,Animals ,Molecular Biology ,Gene ,ADP Ribose Transferases ,chemistry.chemical_classification ,Binding Sites ,030102 biochemistry & molecular biology ,biology ,Helicobacter pylori ,biology.organism_classification ,Vaccination ,Treatment Outcome ,030104 developmental biology ,Enzyme ,chemistry ,ADP-ribosylation ,Recombinant DNA ,Female ,Bacteria ,Protein Binding - Abstract
Mono ADP-ribosyltransferases are a class of functionally conserved enzymes present in prokaryotic and eukaryotic organisms. In prokaryotes, mono ADP-ribose transfer enzymes often represent a family of exotoxins that display activity in a variety of bacteria responsible for causing disease in plants and animals. A bioinformatic approach has allowed us to identify that CagL gene from some Helicobacter pylori strains shares a sequence pattern with ADP-ribosylating toxins of the CT-group. In this manuscript we show that recombinant CagL from Shi470 is catalytically active showing ADP-ribosyltransferase, NAD-glycohydrolase, and auto-ADP-ribosylation activities. This is the first time that a catalytically active member of the ADP-ribosyltransferase family is identified in Helicobacter pylori. This observation may lead to the discovery of novel functions exerted by CagL in the pathogenesis of Helicobacter pylori. Indeed, we have shown that vaccination with CagL has protective efficacy in mice indicating that CagL may be considered as potential component of a Helicobacter pylori vaccine.
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- 2017
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4. Preclinical studies on new proteins as carrier for glycoconjugate vaccines
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Enrico Balducci, Laura Santini, Francesco Berti, Marta Tontini, Daniela Proietti, Cristiana Balocchi, Francesca Micoli, Maria Romano, P. Costantino, and Vega Masignani
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0301 basic medicine ,Glycoconjugate ,Carrier protein ,Meningococcal vaccines ,CRM197 ,Neisseria meningitidis, Serogroup C ,Meningococcal vaccine ,Serum Bactericidal Antibody Assay ,medicine.disease_cause ,Epitope ,Haemophilus influenzae ,Microbiology ,Mice ,03 medical and health sciences ,Immunogenicity, Vaccine ,Antigen ,Immunology and Microbiology(all) ,medicine ,Animals ,Glucans ,Diphtheria toxin ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Vaccines, Conjugate ,General Veterinary ,General Immunology and Microbiology ,biology ,Immunogenicity ,Polysaccharides, Bacterial ,Public Health, Environmental and Occupational Health ,Antibodies, Bacterial ,veterinary(all) ,Virology ,Recombinant Proteins ,030104 developmental biology ,Infectious Diseases ,chemistry ,Antibody Formation ,biology.protein ,Molecular Medicine ,Antibody ,Carrier Proteins ,Glycoconjugates - Abstract
Glycoconjugate vaccines are made of carbohydrate antigens covalently bound to a carrier protein to enhance their immunogenicity. Among the different carrier proteins tested in preclinical and clinical studies, five have been used so far for licensed vaccines: Diphtheria and Tetanus toxoids, the non-toxic mutant of diphtheria toxin CRM197, the outer membrane protein complex of Neisseria meningitidis serogroup B and the Protein D derived from non-typeable Haemophilus influenzae. Availability of novel carriers might help to overcome immune interference in multi-valent vaccines containing several polysaccharide-conjugate antigens, and also to develop vaccines which target both protein as well saccharide epitopes of the same pathogen. Accordingly we have conducted a study to identify new potential carrier proteins. Twenty-eight proteins, derived from different bacteria, were conjugated to the model polysaccharide Laminarin and tested in mice for their ability in inducing antibodies against the carbohydrate antigen and eight of them were subsequently tested as carrier for serogroup meningococcal C oligosaccharides. Four out of these eight were able to elicit in mice satisfactory anti meningococcal serogroup C titers. Based on immunological evaluation, the Streptococcus pneumoniae protein spr96/2021 was successfully evaluated as carrier for serogroups A, C, W, Y and X meningococcal capsular saccharides.
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- 2016
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5. Corrigendum to 'Preclinical studies on new proteins as carrier for glycoconjugate vaccines' [Vaccine 34 (2016) 4235–4242]
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Marta Tontini, Francesco Berti, Cristiana Balocchi, Maria Romano, Francesca Micoli, Vega Masignani, Daniela Proietti, P. Costantino, Enrico Balducci, and Laura Santini
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chemistry.chemical_classification ,Infectious Diseases ,General Veterinary ,General Immunology and Microbiology ,chemistry ,Glycoconjugate ,Immunology and Microbiology(all) ,Immunology ,Public Health, Environmental and Occupational Health ,Molecular Medicine ,Biology ,Virology ,veterinary(all) - Published
- 2017
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6. Auto ADP‐ribosylation of NarE, aNeisseria meningitidisADP‐ribosyltransferase, regulates its catalytic activities
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Rino Rappuoli, Enrico Balducci, Mariangela Del Vecchio, Mariagrazia Pizza, Nathalie Norais, Massimiliano Biagini, Federica Di Marcello, Monica Picchianti, and Daniele Veggi
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GTP' ,Amino Acid Motifs ,Molecular Sequence Data ,Neisseria meningitidis ,Biochemistry ,chemistry.chemical_compound ,NAD+ Nucleosidase ,Hydroxylamine ,Catalytic Domain ,Genetics ,medicine ,Amino Acid Sequence ,Molecular Biology ,Novobiocin ,ADP Ribose Transferases ,chemistry.chemical_classification ,Adenosine Diphosphate Ribose ,Nicotinamide ,Protein Stability ,Mutagenesis ,Molecular biology ,Enzyme ,chemistry ,ADP-ribosylation ,Mutation ,NAD+ kinase ,Biotechnology ,medicine.drug - Abstract
NarE is an arginine-specific mono-ADP-ribosyltransferase identified in Neisseria meningitidis that requires the presence of iron in a structured cluster for its enzymatic activities. In this study, we show that NarE can perform auto-ADP-ribosylation. This automodification occurred in a time- and NAD-concentration-dependent manner; was inhibited by novobiocin, an ADP-ribosyltransferase inhibitor; and did not occur when NarE was heat inactivated. No reduction in incorporation was evidenced in the presence of high concentrations of ATP, GTP, ADP-ribose, or nicotinamide, which inhibits NAD-glycohydrolase, impeding the formation of free ADP-ribose. Based on the electrophoretic profile of NarE on auto-ADP-ribosylation and on the results of mutagenesis and mass spectrometry analysis, the auto-ADP-ribosylation appeared to be restricted to the addition of a single ADP-ribose. Chemical stability experiments showed that the ADP-ribosyl linkage was sensitive to hydroxylamine, which breaks ADP-ribose-arginine bonds. Site-directed mutagenesis suggested that the auto-ADP-ribosylation site occurred preferentially on the R(7) residue, which is located in the region I of the ADP-ribosyltransferase family. After auto-ADP-ribosylation, NarE showed a reduction in ADP-ribosyltransferase activity, while NAD-glycohydrolase activity was increased. Overall, our findings provide evidence for a novel intramolecular mechanism used by NarE to regulate its enzymatic activities.
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- 2013
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7. Identification of an Iron-Sulfur Cluster That Modulates the Enzymatic Activity in NarE, a Neisseria meningitidis ADP-ribosyltransferase
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Angela H. Nobbs, Rebecca Pogni, Maria Camilla Baratto, Enrico Balducci, Mariangela Del Vecchio, Rino Rappuoli, and Mariagrazia Pizza
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Iron-Sulfur Proteins ,Niacinamide ,Iron ,Blotting, Western ,Iron–sulfur cluster ,Neisseria meningitidis ,Heat-labile enterotoxin ,medicine.disease_cause ,Biochemistry ,Catalysis ,Microbiology ,Serine ,chemistry.chemical_compound ,Bacterial Proteins ,medicine ,Transferase ,Cysteine ,Molecular Biology ,Escherichia coli ,Enzyme Assays ,ADP Ribose Transferases ,chemistry.chemical_classification ,Adenosine Diphosphate Ribose ,Enzyme Catalysis and Regulation ,Electron Spin Resonance Spectroscopy ,Cell Biology ,Recombinant Proteins ,Amino acid ,chemistry ,Spectrophotometry ,Vibrio cholerae ,Mutation ,Electrophoresis, Polyacrylamide Gel ,Sulfur - Abstract
In prokaryotes, mono-ADP-ribose transfer enzymes represent a family of exotoxins that display activity in a variety of bacterial pathogens responsible for causing disease in plants and animals, including those affecting mankind, such as diphtheria, cholera, and whooping cough. We report here that NarE, a putative ADP-ribosylating toxin previously identified from Neisseria meningitidis, which shares structural homologies with Escherichia coli heat labile enterotoxin and toxin from Vibrio cholerae, possesses an iron-sulfur center. The recombinant protein was expressed in E. coli, and when purified at high concentration, NarE is a distinctive golden brown in color. Evidence from UV-visible spectrophotometry and EPR spectroscopy revealed characteristics consistent of an iron-binding protein. The presence of iron was determined by colorimetric method and by an atomic absorption spectrophotometer. To identify the amino acids involved in binding iron, a combination of site-directed mutagenesis and UV-visible and enzymatic assays were performed. All four cysteine residues were individually replaced by serine. Substitution of Cys(67) and Cys(128) into serine caused a drastic reduction in the E(420)/E(280) ratio, suggesting that these two residues are essential for the formation of a stable coordination. This modification led to a consistent loss in ADP-ribosyltransferase activity, while decrease in NAD-glycohydrolase activity was less dramatic in these mutants, indicating that the correct assembly of the iron-binding site is essential for transferase but not hydrolase activity. This is the first observation suggesting that a member of the ADP-ribosyltransferase family contains an Fe-S cluster implicated in catalysis. This observation may unravel novel functions exerted by this class of enzymes.
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- 2009
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8. A Spectroscopic Study of the Aggregation State of the Human Antimicrobial Peptide LL-37 in Bacterial versus Host Cell Model Membranes
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Alessio Bonucci, Enrico Balducci, Elena Caldaroni, and Rebecca Pogni
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Models, Molecular ,Circular dichroism ,Protein Conformation ,Membrane lipids ,medicine.medical_treatment ,Antimicrobial peptides ,Peptide ,Biochemistry ,Cathelicidin ,Cell membrane ,Membrane Lipids ,Species Specificity ,Cathelicidins ,medicine ,Humans ,Protein Isoforms ,chemistry.chemical_classification ,Bacteria ,Circular Dichroism ,Cell Membrane ,Electron Spin Resonance Spectroscopy ,Membrane Proteins ,Membranes, Artificial ,Antimicrobial ,Membrane ,medicine.anatomical_structure ,Eukaryotic Cells ,Spectrometry, Fluorescence ,chemistry ,Amino Acid Substitution ,Liposomes ,Antimicrobial Cationic Peptides - Abstract
The LL-37 antimicrobial peptide is the only cathelicidin peptide found in humans that has antimicrobial and immunomodulatory properties. Because it exerts also chemotactic and angiogenetic activity, LL-37 is involved in promoting wound healing, reducing inflammation, and strengthening the host immune response. The key to the effectiveness of antimicrobial peptides (AMPs) lies in the different compositions of bacterial versus host cell membranes. In this context, antimicrobial peptide LL-37 and two variants were studied in the presence of model membranes with different lipid compositions and charges. The investigation was performed using an experimental strategy that combines the site-directed spin labeling-electron paramagnetic resonance technique with circular dichroism and fluorescence emission spectroscopies. LL-37 interacts with negatively charged membranes forming a stable aggregate, which can likely produce toroidal pores until the amount of bound peptide exceeds a critical concentration. At the same time, we have clearly detected an aggregate with a higher oligomeric degree for interaction of LL-37 with neutral membranes. These data confirm the absence of cell selectivity of the peptide and a more complex role in stimulating host cells.
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- 2015
9. Opposite Regulatory Effects of Iron Ions on the In Vitro Catalytic Activities of NarE, the Toxin-like ADP-ribosyltransferase from Neisseria meningitidis
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Enrico Balducci and Mariangela Del Vecchio
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Meningitides ,inorganic chemicals ,Nicotinamide ,Context (language use) ,General Medicine ,Biology ,Ferrous ,chemistry.chemical_compound ,Biochemistry ,chemistry ,medicine ,Transferase ,Ferric ,NAD+ kinase ,Guanidine ,medicine.drug - Abstract
NarE, the mono ADP-ribosyltransferase identified in Neisseria meningitidis, catalyzes three enzymatic reactions. NarE transfers a single ADP-ribose unit to guanidine compounds, hydrolyses NAD in nicotinamide and free ADP-ribose, and ADP-ribosylates itself. We have previously shown that NarE contains an iron-sulfur cluster by biophysical and biochemical analyses. The presence of a structured and stable iron-sulfur cluster is essential for ADP-ribosyltransferase but not for NAD-glycohydrolase activity. We report here that ferric, but not ferrous, ions stimulated the ADPribosyltransferase activity. On the contrary ferrous, but not ferric, ions activated NAD-glycohydrolase activity. These iron effects were reversed when enzymatic reactions were run in the presence of the iron-chelator O-phenantroline. In the presence of either ferric or ferrous ions there was an increase of the Vmax both for transferase and NADase activity while the Km value for NAD was unaltered. The presence of 10 mM Fe3+ increased the ADP-ribosyltransferase activity when we mutated residues not involved in cluster, while is ineffective when residues involved in cluster are mutated. Similar results were obtained with NAD-glycohydrolase activity. The results presented here demonstrate that iron, which plays an important role in metabolism, can modulate NarE activities depending on its oxidation state. This novel observation could be relevant in the context of Neisseria meningitidis infection.
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- 2015
10. NAD-dependent ADP-ribosylation of the human antimicrobial and immune-modulatory peptide LL-37 by ADP-ribosyltransferase-1
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Marta Castagnini, Carla Russo, Massimiliano Biagini, Enrico Balducci, Elisabetta Soldaini, and Monica Picchianti
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medicine.medical_treatment ,Immunology ,Nad dependent ,Peptide ,Biology ,Arginine ,GPI-Linked Proteins ,Microbiology ,Mass Spectrometry ,Cell Line ,Cathelicidin ,Immunomodulation ,Immune system ,Cathelicidins ,medicine ,Animals ,Humans ,Molecular Biology ,ADP Ribose Transferases ,chemistry.chemical_classification ,Adenosine Diphosphate Ribose ,Cell Membrane ,Cell Biology ,NAD ,Antimicrobial ,Infectious Diseases ,Biochemistry ,chemistry ,ADP-ribosylation ,ADP-ribosyltransferase ,NAD+ kinase ,Antimicrobial Cationic Peptides - Abstract
LL-37 is a cationic peptide belonging to the cathelicidin family that has antimicrobial and immune-modulatory properties. Here we show that the mammalian mono-ADP-ribosyltransferase-1 (ART1), which selectively transfers the ADP-ribose moiety from NAD to arginine residues, ADP-ribosylates LL-37 in vitro. The incorporation of ADP-ribose was first observed by Western blot analysis and then confirmed by MALDI-TOF. Mass-spectrometry showed that up to four of the five arginine residues present in LL-37 could be ADP-ribosylated on the same peptide when incubated at a high NAD concentration in the presence of ART1. The attachment of negatively charged ADP-ribose moieties considerably alters the positive charge of the arginine residues thus reducing the cationicity of LL-37. The cationic nature of LL-37 is key for its ability to interact with cell membranes or negatively charged biomolecules, such as DNA, RNA, F-actin and glycosaminoglycans. Thus, the ADP-ribosylation of LL-37 is expected to have the potential to modulate LL-37 biological activities in several physiological and pathological settings.
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- 2015
11. A Rapid ELISA Method to Improve the Automated Test Throughput
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Enrico Balducci, Paolo Ruggiero, Duccio Berti, Paola Fontani, and Daniele Casini
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Robotic systems ,Homogeneous ,Chemistry ,Reagent ,Reaction speed ,Elisa method ,Ligand (biochemistry) ,Throughput (business) ,Combinatorial chemistry - Abstract
In ELISA, ligand is commonly adsorbed to the plastic surface through non-covalent bonds between the hydrophobic regions of the ligand and the plastic surface. Thus, all the reactions occur in a heterogeneous phase, with some reactants in solution, and some immobilized. As a result, the diffusion constant of immobilized reagents is zero and the overall reaction speed is low. With the proposed new approach the first step occurs in a homogeneous phase, aimed at speeding up ELISA procedure especially to easily adapt it to robotic systems. Conventional tests usually may take up to 5 hours. Our “rapid ELISA” approach considerably reduces this time to less than 30 minutes allowing the method to be more suitable for automation. The rapid ELISA has been set up to analyze samples coming from animal studies for vaccine development purposes. In particular, it was applied to quantitate antibodies specific for the Outer Membrane Vesicle of Neisseria meningitidis group B and Influenza virus antigens (H1N1; H3N2; B). Due to its high flexibility, this rapid ELISA can be used to detect a wide range of antibodies raised against a wide range of antigens.
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- 2015
12. NarE: a novel ADP‐ribosyltransferase fromNeisseria meningitidis
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Maurizio Comanducci, Federica Di Marcello, Vega Masignani, Marzia Monica Giuliani, Enrico Balducci, Beatrice Aricò, Mariagrazia Pizza, Maria Scarselli, Davide Serruto, Rino Rappuoli, Stefania Bambini, Daniele Veggi, Silvana Savino, and Jeannette Adu-Bobie
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Signal peptide ,Cholera Toxin ,Bacterial Toxins ,Molecular Sequence Data ,Enterotoxin ,Neisseria meningitidis, Serogroup B ,Protein Sorting Signals ,Biology ,medicine.disease_cause ,Microbiology ,Substrate Specificity ,Enterotoxins ,NAD+ Nucleosidase ,medicine ,Magnesium ,Amino Acid Sequence ,Amino Acids ,Molecular Biology ,Gene ,Peptide sequence ,ADP Ribose Transferases ,Base Sequence ,Sequence Homology, Amino Acid ,Virulence ,Escherichia coli Proteins ,Neisseria meningitidis ,Cholera toxin ,Periplasmic space ,NAD ,biology.organism_classification ,Dithiothreitol ,Multigene Family ,Periplasm ,Neisseria - Abstract
Mono ADP-ribosyltransferases (ADPRTs) are a class of functionally conserved enzymes present in prokaryotic and eukaryotic organisms. In bacteria, these enzymes often act as potent toxins and play an important role in pathogenesis. Here we report a profile-based computational approach that, assisted by secondary structure predictions, has allowed the identification of a previously undiscovered ADP-ribosyltransferase in Neisseria meningitidis (NarE). NarE shows structural homologies with E. coli heat-labile enterotoxin (LT) and cholera toxin (CT) and possesses ADP-ribosylating and NAD-glycohydrolase activities. As in the case of LT and CT, NarE catalyses the transfer of the ADP-ribose moiety to arginine residues. Despite the absence of a signal peptide, the protein is efficiently exported into the periplasm of Neisseria. The narE gene is present in 25 out of 43 strains analysed, is always present in ET-5 and Lineage 3 but absent in ET-37 and Cluster A4 hypervirulent lineages. When present, the gene is 100% conserved in sequence and is inserted upstream of and co-transcribed with the lipoamide dehydrogenase E3 gene. Possible roles in the pathogenesis of N. meningitidis are discussed.
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- 2003
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13. [Untitled]
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L.G. Micossi and Enrico Balducci
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A549 cell ,chemistry.chemical_classification ,Nicotinamide ,Clinical Biochemistry ,Cell Biology ,General Medicine ,Biology ,NAD+ nucleosidase ,Cell biology ,chemistry.chemical_compound ,Glycerol-3-phosphate dehydrogenase ,Enzyme ,Biochemistry ,chemistry ,ADP-ribosylation ,NAD+ kinase ,Molecular Biology ,NAD glycohydrolase activity - Abstract
NAD glycohydrolases are enzymes that catalyze the hydrolisis of NAD to produce ADP-ribose and nicotinamide. Regulation of these enzymes has not been fully elucidated. We have identified an NAD-glycohydrolase activity associated with the outer surface of the plasma membrane in human lung epithelial cell line A549. This activity is negatively regulated by its substrate β-NAD but not by α-NAD. Partial restoration of NADase activity after incubation of the cells with arginine or histidine, known ADP-ribose acceptors, suggests that inhibition be regulated by ADP-ribosylation. A549 do not undergo to apoptosis upon NAD treatment indicating that this effect be likely mediated by a cellular component(s) lacking in epithelial cells.
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- 2002
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14. Human neutrophil peptide 1 variants bearing arginine modified cationic side chains: Effects on membrane partitioning
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Rebecca Pogni, Manuele Martinelli, Alessio Bonucci, and Enrico Balducci
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Models, Molecular ,chemistry.chemical_classification ,alpha-Defensins ,Arginine ,Chemistry ,Hydrogen bond ,Lysine ,Lipid Bilayers ,Organic Chemistry ,Biophysics ,Cationic polymerization ,Peptide ,Biochemistry ,MOPS ,Amino acid ,Membrane Lipids ,chemistry.chemical_compound ,Membrane ,Cations ,Side chain ,Humans ,HNP-1 variants Arginine modified side chains Bacterial model membrane Reduced lipid–protein interaction Spectroscopic techniques - Abstract
α-Defensins (e.g. human neutrophil peptides, HNPs) have a broad spectrum bactericidal activity contributing to human innate immunity. The positive charge of amino acid side chains is responsible for the first interaction of cationic antimicrobial peptides with negatively charged bacterial membranes. α-Defensins contain a high content of Arg residues compared to Lys. In this paper, different peptide analogs including substitution of Arg-14 respectively with N G –N G′ -asymmetric dimethyl- l -arginine (ADMA), N G –N G′ -symmetric dimethyl- l -arginine (SDMA) and Lys ( R14K and R15K R14K R15K ) variants have been studied to test the role of Arg guanidino group and the localized cationic charge of Lys for interaction with lipid membranes. Our findings show that all the variants have a decreased disruptive activity against the bilayer. The methylated analogs show a reduction in membrane partitioning due to the lack of their ability to form hydrogen bonds. Comparison with the native HNP-1 peptide has been discussed.
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- 2014
15. Selective Expression of RT6 Superfamily in Human Bronchial Epithelial Cells
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Joel Moss, Koji Horiba, Jiro Usuki, Enrico Balducci, Maryann Park, and Victor J. Ferrans
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Antigens, Differentiation, T-Lymphocyte ,Pulmonary and Respiratory Medicine ,Saccharomyces cerevisiae Proteins ,Clinical Biochemistry ,Bronchi ,Inflammation ,Biology ,Nicotinamide adenine dinucleotide ,GPI-Linked Proteins ,Fungal Proteins ,Immunoenzyme Techniques ,chemistry.chemical_compound ,Phosphoinositide Phospholipase C ,medicine ,Humans ,Cytotoxic T cell ,RNA, Messenger ,Northern blot ,Lung ,Molecular Biology ,In Situ Hybridization ,Epithelial polarity ,ADP Ribose Transferases ,Messenger RNA ,Membrane Glycoproteins ,Reverse Transcriptase Polymerase Chain Reaction ,Phosphatidylinositol Diacylglycerol-Lyase ,Membrane Proteins ,Epithelial Cells ,Cell Biology ,Immunohistochemistry ,Molecular biology ,Cell biology ,DNA-Binding Proteins ,Adenosine diphosphate ,chemistry ,Multigene Family ,Type C Phospholipases ,Poly(ADP-ribose) Polymerases ,medicine.symptom ,Intracellular ,Transcription Factors - Abstract
RT6 proteins are glycosylphosphatidylinositol (GPI)-linked alloantigens that are localized to cytotoxic T lymphocytes and that have nicotinamide adenine dinucleotide glycohydrolase and adenosine diphosphate (ADP)-ribosyltransferase activities. In view of the importance of GPI-linked surface proteins in mediating interactions of cells with their milieu, and the varied functions of airway cells in inflammation, we undertook the present study to determine whether human homologues of the RT6 superfamily of ADP-ribosyltransferases (ART) are expressed in pulmonary epithelial cells. We hypothesized that these surface proteins or related family members may be present in cells that interact with inflammatory cells, and that they may thereby be involved in intercellular signaling. Using in situ analysis and Northern blot analysis, we identified ART1 messenger RNA (mRNA) in airway epithelial cells. As expected for GPI-anchored proteins, the localization of ART1 at the apical surface of ciliated epithelial cells was demonstrated by staining with polyclonal anti-ART1 antibody, and was confirmed by loss of this immunoreactivity after treatment with phosphatidylinositol-specific phospholipase C (PI-PLC), which selectively cleaves GPI anchors and releases proteins from the plasma membrane. Using in situ hybridization with specific ART3 and ART4 oligonucleotides, we also identified two additional members of the RT6 superfamily in epithelial cells. In accord with these findings, we identified ART3 and ART4 mRNAs through reverse transcription- polymerase chain reaction of polyadenine-positive RNA from human trachea. Interestingly, these proteins appeared to be preferentially localized to the airway epithelium. The localized expression of these members of the RT6 superfamily in human pulmonary epithelial cells may reflect a role for them in cell-cell signaling during immune responses within the airway.
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- 1999
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16. [Untitled]
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Ian J. Okazaki, Michael T. Shoemaker, Maryann Park, Enrico Balducci, Hyun Ju Kim, Piotr Konczalik, Anna Zolkiewska, Eleanor Cavanaugh, Linda A. Stevens, Elena Lesma, and Joel Moss
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Signal peptide ,chemistry.chemical_classification ,Clinical Biochemistry ,Cell Biology ,General Medicine ,NAD+ nucleosidase ,Biology ,Molecular biology ,Amino acid ,NAD binding ,Protein structure ,Biochemistry ,chemistry ,ADP-ribosylation ,NAD+ kinase ,Molecular Biology ,Peptide sequence - Abstract
NAD:arginine mono-ADP-ribosyltransferases catalyze the transfer of ADP-ribose from NAD to the guanidino group of arginine on a target protein. Deduced amino acid sequences of one family (ART1) of mammalian ADP-ribosyltransferases, cloned from muscle and lymphocytes, show hydrophobic amino and carboxyl termini consistent with glycosylphosphatidylinositol (GPI)-anchored proteins. The proteins, overexpressed in mammalian cells transfected with the transferase cDNAs, are released from the cell surface with phosphatidylinositol-specific phospholipase C (PI-PLC), and display immunological and biochemical characteristics consistent with a cell surface, GPI-anchored protein. In contrast, the deduced amino acid sequence of a second family (ART5) of transferases, cloned from murine lymphoma cells and expressed in high abundance in testis, displays a hydrophobic amino terminus, consistent with a signal sequence, but lacks a hydrophobic signal sequence at its carboxyl terminus, suggesting that the protein is destined for export. Consistent with the surface localization of the GPI-linked transferases, multiple surface substrates have been identified in myotubes and activated lymphocytes, and, notably, include integrin α subunits. Similar to the bacterial toxin ADP-ribosyltransferases, the mammalian transferases contain the characteristic domains involved in NAD binding and ADP-ribose transfer, including a highly acidic region near the carboxy terminus, which, when disrupted by in vitro mutagenesis, results in a loss of enzymatic activity. The carboxyl half of the protein, synthesized as a fusion protein in E. coli, possessed NADase, but not ADP-ribosyltransferase activity. These findings are consistent with the existence at the carboxyl terminus of ART1 of a catalytically active domain, capable of hydrolyzing NAD, but not of transferring ADP-ribose to a guanidino acceptor.
- Published
- 1999
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17. A filter plate-based assay for mono adenosine 5′-diphosphate-ribosyltransferases
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Enrico Balducci
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Chromatography ,Chemistry ,Filter (video) ,Biophysics ,Cell Biology ,Molecular Biology ,Biochemistry ,Adenosine 5 diphosphate - Published
- 2005
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18. NMN adenylyltransferase from bull testis: purification and properties
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Giuseppe Orsomando, Alberto Vita, Paolo Natalini, Valeria Polzonetti, Silverio Ruggieri, Enrico Balducci, M. Emanuelli, Giulio Magni, and Nadia Raffaelli
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Male ,Size-exclusion chromatography ,Biochemistry ,Antibodies ,Chromatography, Affinity ,Enzyme Stability ,Testis ,Animals ,Nicotinamide-Nucleotide Adenylyltransferase ,Amino Acids ,Molecular Biology ,Chromatography, High Pressure Liquid ,chemistry.chemical_classification ,Chromatography ,biology ,Nicotinamide-nucleotide adenylyltransferase ,Active site ,Fast protein liquid chromatography ,Cell Biology ,Chromatography, Ion Exchange ,Arrhenius plot ,Kinetics ,Durapatite ,Enzyme ,Isoelectric point ,chemistry ,biology.protein ,Cattle ,Electrophoresis, Polyacrylamide Gel ,Protein quaternary structure ,Research Article - Abstract
The purification procedure of NMN adenylyltransferase from bull testis presented here consists of a heat step and an acidic precipitation followed by four chromatographic steps, including dye ligand, adsorption and hydrophobic chromatography. The final enzyme preparation subjected to non-denaturing and denaturating PAGE with silver nitrate staining exhibited a single band. At this step the enzyme appeared to be homogeneous. The M(r) value of the native enzyme calculated by gel filtration was about 133,000. The protein appeared to possess a quaternary structure with four subunits of apparent M(r) 33,000 without disulphide interchain bonds. Isoelectric experiments gave a pI of 6.2, and pH studies showed the possible presence of an acidic group in the active site having a pKa of 4.9. Analysis of the amino acid composition showed the presence of more acidic residues than basic ones, according to the pI value calculated by Mono P FPLC. The Ea calculated by Arrhenius plot gave an apparent value of 55.7 kJ/mol. The Km values for NMN, ATP, NAD+ and PPi were 0.11, 0.023, 0.37 and 0.16 nM respectively. The polyclonal antiserum produced against the NMN adenylyltransferase reacted with the purified enzyme at different dilutions and recognized the enzyme in the homogenate as well.
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- 1995
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19. The antitumor drug, 1,3-bis(2-chloroethyl)-1-nitroso-urea, inactivates human nicotinamide mononucleotide adenylyltransferase
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Silveri Ruggieri, Adolfo Amici, Giulio Magni, Nadia Raffaelli, Enrico Balducci, M. Emanuelli, and Paolo Natalini
- Subjects
Time Factors ,Placenta ,Biochemistry ,Dithiothreitol ,chemistry.chemical_compound ,Adenosine Triphosphate ,medicine ,Humans ,Nicotinamide-Nucleotide Adenylyltransferase ,Nicotinamide Mononucleotide ,Nicotinamide mononucleotide ,Pharmacology ,chemistry.chemical_classification ,Carmustine ,Nicotinamide-nucleotide adenylyltransferase ,organic chemicals ,Temperature ,Biological activity ,Nitroso ,Molecular biology ,Enzyme ,chemistry ,NAD+ kinase ,medicine.drug - Abstract
Nicotinamide mononucleotide (NMN) adenylyltransferase (EC 2.7.7.1) from human placenta is rapidly inactivated by 1,3-bis(2-chloroethyl)-1-nitrosourea (BCNU). A similar inactivation is observed with other C- and N-nitroso compounds. The inactivation by BCNU is dependent on incubation time, temperature and BCNU concentration. Protective reagents for -SH groups, dithiothreitol and beta-mercaptoethanol, and the substrate NMN are very effective in protecting NMN adenylyltransferase from BCNU inactivation and in preserving its catalytic properties, while ATP is less efficient. Incubation of BCNU-inactivated and dialysed NMN adenylyltransferase with dithiothreitol results in a partial recovery of the enzymatic activity.
- Published
- 1995
- Full Text
- View/download PDF
20. Structural basis for lack of toxicity of the diphtheria toxin mutant CRM197
- Author
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Marco Biancucci, Francesco Berti, Glen Spraggon, Enrico Malito, Paola Lo Surdo, Ansgar Brock, Monica Picchianti, Mikkel Nissum, Paolo Costantino, Matthew J. Bottomley, Connie Chen, Rino Rappuoli, Badry Bursulaya, and Enrico Balducci
- Subjects
Diphtheria toxin ,Models, Molecular ,Multidisciplinary ,Nicotinamide ,Protein Conformation ,Biology ,Molecular Dynamics Simulation ,Biological Sciences ,medicine.disease_cause ,NAD ,Haemophilus influenzae ,NAD binding ,chemistry.chemical_compound ,Protein structure ,Biochemistry ,chemistry ,Bacterial Proteins ,ADP-ribosylation ,Mutation ,medicine ,NAD+ kinase ,sense organs ,Conjugate - Abstract
CRM197 is an enzymatically inactive and nontoxic form of diphtheria toxin that contains a single amino acid substitution (G52E). Being naturally nontoxic, CRM197 is an ideal carrier protein for conjugate vaccines against encapsulated bacteria and is currently used to vaccinate children globally against Haemophilus influenzae , pneumococcus, and meningococcus. To understand the molecular basis for lack of toxicity in CRM197, we determined the crystal structures of the full-length nucleotide-free CRM197 and of CRM197 in complex with the NAD hydrolysis product nicotinamide (NCA), both at 2.0-Å resolution. The structures show for the first time that the overall fold of CRM197 and DT are nearly identical and that the striking functional difference between the two proteins can be explained by a flexible active-site loop that covers the NAD binding pocket. We present the molecular basis for the increased flexibility of the active-site loop in CRM197 as unveiled by molecular dynamics simulations. These structural insights, combined with surface plasmon resonance, NAD hydrolysis, and differential scanning fluorimetry data, contribute to a comprehensive characterization of the vaccine carrier protein, CRM197.
- Published
- 2012
21. Structural and Functional Consequences Induced by Post-Translational Modifications in α-Defensins
- Author
-
Eleonora Talluri, Monica Picchianti, Alessio Bonucci, Enrico Balducci, and Rebecca Pogni
- Subjects
chemistry.chemical_classification ,Arginine ,Peptide ,Chemotaxis ,Review Article ,Biology ,Ornithine ,Cleavage (embryo) ,Antimicrobial ,Biochemistry ,chemistry.chemical_compound ,chemistry ,Moiety ,NAD+ kinase - Abstract
HNP-1 is an antimicrobial peptide that undergoes proteolytic cleavage to become a mature peptide. This process represents the mechanism commonly used by the cells to obtain a fully active antimicrobial peptide. In addition, it has been recently described that HNP-1 is recognized as substrate by the arginine-specific ADP-ribosyltransferase-1. Arginine-specific mono-ADP-ribosylation is an enzyme-catalyzed post-translational modification in which NAD+serves as donor of the ADP-ribose moiety, which is transferred to the guanidino group of arginines in target proteins. While the arginine carries one positive charge, the ADP-ribose is negatively charged at the phosphate moieties at physiological pH. Therefore, the attachment of one or more ADP-ribose units results in a marked change of cationicity. ADP-ribosylation of HNP-1 drastically reduces its cytotoxic and antibacterial activities. While the chemotactic activity of HNP-1 remains unaltered, its ability to induce interleukin-8 production is enhanced. The arginine 14 of HNP-1 modified by the ADP-ribose is in some cases processed into ornithine, perhaps representing a different modality in the regulation of HNP-1 activities.
- Published
- 2011
22. Mono ADP-ribosylation inhibitors prevent inflammatory cytokine release in alveolar epithelial cells
- Author
-
Enrico Balducci and Mariangela Del Vecchio
- Subjects
Arginine ,medicine.medical_treatment ,Clinical Biochemistry ,Cell ,Biology ,GPI-Linked Proteins ,Cell Line ,Proinflammatory cytokine ,medicine ,Humans ,Molecular Biology ,Novobiocin ,ADP Ribose Transferases ,chemistry.chemical_classification ,Interleukin-6 ,Interleukin-8 ,Epithelial Cells ,Cell Biology ,General Medicine ,Cell biology ,Pulmonary Alveoli ,3-Iodobenzylguanidine ,medicine.anatomical_structure ,Cytokine ,Enzyme ,chemistry ,Cell culture ,ADP-ribosylation ,Inflammation Mediators ,medicine.drug - Abstract
A549, a type II alveolar epithelial cell line stimulated with LPS (10 mug/ml), released high levels of the inflammatory cytokines IL-6 and IL-8. Here, we have investigated whether ADP-ribosylation inhibitors block the LPS-triggered cytokine release in epithelial cells. When coincubating A549 with LPS and meta-iodobenzylguanidine or novobiocin, selective arginine-dependent ART-inhibitors, the release of IL-6 and IL-8 was inhibited in a concentration-dependent manner. This effect has been linked with the presence of a functionally active arginine ADP-ribosylating enzyme on the cell surface. To this aim, we amplified by RT-PCR the ART1 transcript and identified four ADP-ribosylated proteins likely substrate for ART1. The mechanism behind the cytokine inhibition in epithelial cells seems to be correlated with the presence of ART1, which behaves as an essential positive regulator of inflammatory cytokines. This novel observation indicates this enzyme as well as other novobiocin/MIBG sensitive ARTs as potential targets for the development of new therapeutic strategies.
- Published
- 2008
23. Expression and selective up-regulation of toxin-related mono ADP-ribosyltransferases by pathogen-associated molecular patterns in alveolar epithelial cells
- Author
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Enrico Balducci, L.G. Micossi, Elisabetta Soldaini, and Rino Rappuoli
- Subjects
Lipopolysaccharides ,Bacterial Toxins ,Biophysics ,Peptidoglycan ,Biology ,Arginine ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Cell Line ,Substrate Specificity ,Lipopeptides ,chemistry.chemical_compound ,Ectoenzymes ,Cricetulus ,Structural Biology ,Cricetinae ,Genetics ,Animals ,Humans ,RNA, Messenger ,Molecular Biology ,ADP Ribose Transferases ,Toll-like receptor ,Innate immune system ,Pathogen-associated molecular pattern ,Epithelial Cells ,Cell Biology ,Alveolar epithelial cell ,Molecular biology ,Up-Regulation ,Toll-like receptors ,Enzyme Activation ,Pulmonary Alveoli ,Teichoic Acids ,TLR2 ,chemistry ,TLR4 ,biology.protein ,lipids (amino acids, peptides, and proteins) ,Lipoteichoic acid ,Peptides ,Flagellin ,ADP-ribosylation - Abstract
Mono ADP-ribosyltransferases (ARTs) are a family of enzymes related to bacterial toxins that possess adenosine diphosphate ribosyltransferase activity. We have assessed that A549 constitutively expressed ART1 on the cell surface and shown that lipotheicoic acid (LTA) and flagellin, but not lipopolysaccharide (LPS), peptidoglycan (PG) and poly (I:C), up-regulate ART1 in a time and dose dependent manner. These agonists did not alter the expression of ART3 and ART5 genes. Indeed, LTA and flagellin stimulation increased the level of ART1 protein and transcript while ART4 gene was activated after stimulation of cells with LPS, LTA, PAM and PG via TLR2 and TLR4 receptors. These results show that human ARTs possess a differential capacity to respond to bacteria cell wall components and might play a crucial role in innate immune response in airways.
- Published
- 2007
24. A filter plate-based assay for mono ADP-ribosyltransferases [corrected]
- Author
-
Enrico, Balducci
- Subjects
ADP Ribose Transferases ,Cell Line, Tumor ,Cricetinae ,Animals ,Humans ,NAD ,Peptides ,Cells, Cultured ,Filtration - Published
- 2005
25. In silico identification of novel bacterial ADP-ribosyltransferases
- Author
-
Maurizio Comanducci, Beatrice Aricò, Enrico Balducci, Mariagrazia Pizza, Rino Rappuoli, Daniele Veggi, Davide Serruto, and Vega Masignani
- Subjects
Microbiology (medical) ,Models, Molecular ,Protein Conformation ,In silico ,Amino Acid Motifs ,Bacterial Toxins ,Molecular Sequence Data ,Virulence ,Bacterial genome size ,Neisseria meningitidis ,medicine.disease_cause ,Microbiology ,Homology (biology) ,Catalytic Domain ,medicine ,Amino Acid Sequence ,Protein secondary structure ,Genetics ,ADP Ribose Transferases ,biology ,General Medicine ,biology.organism_classification ,Infectious Diseases ,Bacteria ,Genome, Bacterial - Abstract
With the advent of the genomic era, identification of bacterial factors involved in virulence is a different challenge. Given the vast amount of information available on toxins, in terms of sequence and 3D structure, and thanks to the growing number of sequenced bacterial genomes, it is possible to proceed by homology criteria to predict novel toxins in different microorganisms. ADP-ribosyltransferases constitute a class of functionally conserved enzymes, which display toxic activity in a variety of bacterial pathogens. Since these proteins play a key role in pathogenesis, they have been extensively characterized and successfully used as vaccine components and mucosal adjuvants. Therefore, the application of in silico analyses to identify novel members of this class of enzymes represents an important challenge in the genomic era. To address this subject, different groups have recently pursued homology-based procedures to screen bacterial genomes for novel, yet undiscovered ADP-ribosyltransferases (ADPRTs) and have identified more than twenty novel ADPRTs in Gram-positive and Gram-negative bacteria. We have developed a novel pattern-based computational approach, which, flanked by secondary structure prediction tools, has allowed the identification of previously unrecognised putative ADPRTs. One of them, identified in Neisseria meningitidis has been extensively characterized and shown to possess the predicted enzymatic activity, suggesting a possible role of this protein in the virulence of Meningococcus.
- Published
- 2004
26. NAD-dependent inhibition of the NAD-glycohydrolase activity in A549 cells
- Author
-
Enrico, Balducci and Luigi G, Micossi
- Subjects
Hydrolysis ,Cell Membrane ,Apoptosis ,Epithelial Cells ,Arginine ,Flow Cytometry ,NAD ,Protein Transport ,NAD+ Nucleosidase ,Humans ,Histidine ,ADP-ribosyl Cyclase ,Lung ,Propidium - Abstract
NAD glycohydrolases are enzymes that catalyze the hydrolysis of NAD to produce ADP-ribose and nicotinamide. Regulation of these enzymes has not been fully elucidated. We have identified a NAD-glycohydrolase activity associated with the outer surface of the plasma membrane in human lung epithelial cell line A549. This activity is negatively regulated by its substrate beta-NAD but not by alpha-NAD. Partial restoration of NADase activity after incubation of the cells with arginine or histidine, known ADP-ribose acceptors, suggests that inhibition be regulated by ADP-ribosylation. A549 do not undergo to apoptosis upon NAD treatment indicating that this effect be likely mediated by a cellular component(s) lacking in epithelial cells.
- Published
- 2002
27. Characterization of NAD:arginine ADP-ribosyltransferases
- Author
-
Joel Moss, Enrico Balducci, Eleanor Cavanaugh, Hyun Ju Kim, Piotr Konczalik, Elena A. Lesma, Ian J. Okazaki, Maryann Park, Michael Shoemaker, Linda A. Stevens, and Anna Zolkiewska
- Published
- 1999
- Full Text
- View/download PDF
28. Assay methods for nicotinamide mononucleotide adenylyltransferase of wide applicability
- Author
-
Giulio Magni, Silverio Ruggieri, M. Emanuelli, G. Orsomando, Valeria Polzonetti, Nadia Raffaelli, Enrico Balducci, Paolo Natalini, and Adolfo Amici
- Subjects
chemistry.chemical_classification ,Chromatography ,biology ,Nicotinamide-nucleotide adenylyltransferase ,Biophysics ,Cell Biology ,Biochemistry ,High-performance liquid chromatography ,Enzyme assay ,Reaction rate ,Enzyme Activation ,Enzyme activator ,Enzyme ,chemistry ,Spectrophotometry ,NMNAT1 ,biology.protein ,NAD+ kinase ,Nicotinamide-Nucleotide Adenylyltransferase ,Molecular Biology ,Chromatography, High Pressure Liquid - Abstract
NMN adenylyltransferase (NMNAT) reversibly catalyzes the synthesis of NAD+ or NaAD+ from ATP and NMN or NaMN. In this work, we describe a continuous coupled spectrophotometric assay that can be rapidly and routinely used in place of the previous cumbersome two-step assay. The reaction rates measured with the coupled assay display a linear dependence with respect to enzyme concentration over the range investigated. The method yields accurate and reliable estimates of the enzyme activity in the direction of NAD+ synthesis. Furthermore, we developed an HPLC-based method suitable for the assay activity both in the forward and reverse directions of the enzymatic reaction. The method appears particularly useful for measuring the NMNAT activity when the product is not NAD+ (e.g., in studies using alternative substrates), and offers the possibility of monitoring simultaneously both the NMNAT-catalyzed reaction and interfering side reactions. This is achieved through the HPLC identification and quantitation of metabolites and derivatives produced in the reaction mixture during the assay. The two methods described here should cover most needs for the assay of NMNAT activity.
- Published
- 1995
29. Netilmicin influences siderophores production and iron receptor expression in Escherichia coli
- Author
-
Mignini, F., Enrico Balducci, and Covelli, I.
- Published
- 1994
30. NAD BIOSYNTHESIS IN HUMAN PLACENTA: CHARACTERIZATION OF HOMOGENEOUS NMN ADENYLYLTRANSFERASE
- Author
-
Nadia Raffaelli, M. Emanuelli, Giulio Magni, Paolo Natalini, Silverio Ruggieri, and Enrico Balducci
- Subjects
chemistry.chemical_classification ,biology ,Heterologous ,Human placenta ,Cysteic acid ,In vitro ,Chromatin ,chemistry.chemical_compound ,Enzyme ,chemistry ,Biochemistry ,biology.protein ,NAD+ kinase ,Polymerase - Abstract
The nuclear location of NMN adenylyltransferase (NMNAT), the last enzyme in the main biosynthetic pathway of NAD+, prompted us to investigate about a possible involvement of this enzyme in the regulation of the cellular activity by hypothesizing its eventual relationship with poly(ADP-ribose) polymerase (ADPRP), another chromatin bound enzyme. This hypothesis was based on the discovery of an inhibitory effect exerted by NMNAT on ADPRP in vitro in reconstituted systems, composed by enzymes purified both from different sources (heterologous system) (1) and from identical sources (homologous system) (2). In order to verify such a phenomenon in man and to better elucidate its functional significance we carried out the purification of NMNAT from human placenta, where the system involved in NAD+ comsumption has been fully characterized (3).
- Published
- 1992
31. Nuclear matrix-associated NMN adenylyltransferase activity in human placenta
- Author
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Nadia Raffaelli, Silverio Ruggieri, Paolo Natalini, M. Emanuelli, Giulio Magni, Enrico Balducci, and Alberto Vita
- Subjects
Placenta ,Biophysics ,Biology ,Cell Fractionation ,Biochemistry ,chemistry.chemical_compound ,Pregnancy ,medicine ,Humans ,Nuclear Matrix ,Nicotinamide-Nucleotide Adenylyltransferase ,Molecular Biology ,Cell Nucleus ,chemistry.chemical_classification ,Nicotinamide-nucleotide adenylyltransferase ,Proteins ,RNA ,DNA ,Cell Biology ,Nuclear matrix ,Kinetics ,Cell nucleus ,Enzyme ,medicine.anatomical_structure ,chemistry ,Female ,Cell fractionation - Abstract
This paper presents data about the presence of the NMN adenylyltransferase at the nuclear matrix level of human placenta nuclei. It was found that 40-45% of the activity (depending on the extraction procedure) referred to the total nuclear NMN adenylyltransferase was tightly associated with this subnuclear compartment. The matrices purified by two different procedures exhibited DNA, RNA and protein contents comparable with those described in literature. Extensive digestion of human placenta nuclei with DNase I was not able to solubilize the NMN adenylyltransferase activity. Therefore, the data we present are consistent with the conclusion that a part of the total nuclear NMN adenylyltransferase is associated with the nuclear matrix.
- Published
- 1992
32. Presence of NAD pyrophosphorylase in skeletal muscle in dystrophic mice
- Author
-
Alberto Vita, Silverio Ruggieri, L. Lauro, Giulio Magni, Silvia Vincenzetti, I. Santarelli, Paolo Natalini, and Enrico Balducci
- Subjects
Tris ,Male ,Ratón ,Duchenne muscular dystrophy ,NMN Adenylyltransferase ,NAD Pyrophosphorylase ,Biology ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Mice ,Adenosine Triphosphate ,medicine ,Animals ,Nicotinamide-Nucleotide Adenylyltransferase ,Molecular Biology ,Pharmacology ,chemistry.chemical_classification ,Muscles ,Skeletal muscle ,Cell Biology ,Muscular Dystrophy, Animal ,medicine.disease ,Mice, Mutant Strains ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Enzyme ,chemistry ,Biochemistry ,Molecular Medicine ,PMSF - Abstract
NAD pyrophosphorylase (ATP:NMN adenylyltransferase) activity has been measured in the skeletal muscle of dystrophic mice. The amount of this enzyme in the dystrophic mice, as determined by three different methods, was about one half of that in the controls. In addition, the concentration of ATP was too low to be detected in crude extracts of dystrophic mouse skeletal muscle, which were prepared using Tris buffer alone or Tris buffer containing either 3 M KCl, or 1 mM PMSF.
- Published
- 1991
33. Erratum to 'A filter plate-based assay for mono adenosine 5′-diphosphate-ribosyltransferases' [Anal. Biochem. 344 (2005) 278–280]
- Author
-
Enrico Balducci
- Subjects
Biochemistry ,Chemistry ,Filter (video) ,Biophysics ,Cell Biology ,Molecular Biology ,Adenosine 5 diphosphate - Published
- 2006
- Full Text
- View/download PDF
34. In silico identification of novel bacterial ADP-ribosyltransferases.
- Author
-
Vega Masignani, Enrico Balducci, Davide Serruto, Daniele Veggi, Beatrice Aricò, Maurizio Comanducci, Mariagrazia Pizza, and Rino Rappuoli
- Subjects
PATHOGENIC microorganisms ,GENOMICS ,HOMOLOGY (Biology) ,MICROORGANISMS - Abstract
With the advent of the genomic era, identification of bacterial factors involved in virulence is a different challenge. Given the vast amount of information available on toxins, in terms of sequence and 3D structure, and thanks to the growing number of sequenced bacterial genomes, it is possible to proceed by homology criteria to predict novel toxins in different microorganisms. ADP-ribosyltransferases constitute a class of functionally conserved enzymes, which display toxic activity in a variety of bacterial pathogens. Since these proteins play a key role in pathogenesis, they have been extensively characterized and successfully used as vaccine components and mucosal adjuvants. Therefore, the application of in silico analyses to identify novel members of this class of enzymes represents an important challenge in the genomic era. To address this subject, different groups have recently pursued homology-based procedures to screen bacterial genomes for novel, yet undiscovered ADP-ribosyltransferases (ADPRTs) and have identified more than twenty novel ADPRTs in Gram-positive and Gram-negative bacteria. We have developed a novel pattern-based computational approach, which, flanked by secondary structure prediction tools, has allowed the identification of previously unrecognised putative ADPRTs. One of them, identified in Neisseria meningitidis has been extensively characterized and shown to possess the predicted enzymatic activity, suggesting a possible role of this protein in the virulence of Meningococcus. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
35. The defensin–lipid interaction: Insights on the binding states of the human antimicrobial peptide HNP-1 to model bacterial membranes
- Author
-
Enrico Balducci, Alessio Bonucci, Sara Pistolesi, and Rebecca Pogni
- Subjects
alpha-Defensins ,Lipid Bilayers ,Antimicrobial peptides ,Biophysics ,Peptide ,Bacterial Physiological Phenomena ,HNP-1 ,Spectroscopic analysis ,Biochemistry ,Partition coefficient ,Defensins ,Cations ,medicine ,Humans ,Mode of action ,Lipid bilayer ,Defensin ,chemistry.chemical_classification ,Antimicrobial peptide ,Bacterial model membrane ,Bilayer interaction ,Circular Dichroism ,Cell Membrane ,Electron Spin Resonance Spectroscopy ,Tryptophan ,Biological activity ,Cell Biology ,Antimicrobial ,Lipids ,Anti-Bacterial Agents ,Kinetics ,Microscopy, Fluorescence ,chemistry ,Mechanism of action ,Thermodynamics ,medicine.symptom ,Peptides ,Protein Binding - Abstract
Antimicrobial peptides are an important component of innate immunity and have generated considerable interest as a new potential class of natural antibiotics. The biological activity of antimicrobial peptides is strongly influenced by peptide–membrane interactions. Human Neutrophil Peptide 1 (HNP-1) is a 30 aminoacid peptide, belonging to the class of α-defensins. Many biophysical studies have been performed on this peptide to define its mechanism of action. Combining spectroscopic and thermodynamic analysis, insights on the interaction of the α-defensin with POPE:POPG:CL negative charged bilayers are given. The binding states of the peptide below and above the threshold concentration have been analyzed showing that the interaction with lipid bilayers is dependent by peptide concentration. These novel results that indicate how affinity and biological activities of natural antibiotics are depending by their concentration, might open new way of investigation of the antimicrobial mode of action.
- Full Text
- View/download PDF
36. Arginine-lysine swaps selectively enhance antimicrobial activity over cytotoxic activity of LL-37 peptide
- Author
-
Bonucci, A., Pogni, R., and Enrico Balducci
- Subjects
Antimicrobial ,Cytotoxicity ,LL-37 ,Peptide
37. Human placenta cytidine deaminase: A zinc metalloprotein
- Author
-
Enrico Balducci, Alberto Vita, Alessandra Cambi, Rosaria Volpini, Paolo Natalini, and Silvia Vincenzetti
- Subjects
Stereochemistry ,Placenta ,Protein subunit ,Molecular Sequence Data ,Clinical Biochemistry ,chemistry.chemical_element ,Zinc ,Picolinic acid ,Biochemistry ,chemistry.chemical_compound ,Bacterial Proteins ,Pregnancy ,Cytidine Deaminase ,Genetics ,Metalloprotein ,Humans ,Amino Acid Sequence ,Cysteine ,Sulfhydryl Compounds ,Picolinic Acids ,Molecular Biology ,Chelating Agents ,chemistry.chemical_classification ,Sequence Homology, Amino Acid ,Cell Biology ,Cytidine deaminase ,Dipicolinic acid ,Amino acid ,chemistry ,Female ,Sequence Alignment ,Phenanthrolines - Abstract
Cytidine deaminase, a tetrameric enzyme purified from human placenta, was shown to contain a single atom of tightly bound zinc per subunit by Inductively Coupled Plasma Optical Emission Spectrometry analysis. The metal appears to be involved in catalysis, as suggested by the inhibition exerted by 1,10-phenanthroline and dipicolinic acid. This hypothesis is further supported by the finding that the presence of substrate protects the enzymatic activity from dipicolinic acid inhibition. Furthermore the total cysteine residues per subunit were investigated by sulphydryl groups titrating agents.
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