1. Single-cell transcriptomics reveals zone-specific alterations of liver sinusoidal endothelial cells in cirrhosis
- Author
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Yilin Yang, Yasuko Iwakiri, Tingting Su, Sanchuan Lai, Yirang Jung, Matthew McConnell, Teruo Utsumi, and Jain Jeong
- Subjects
Liver Cirrhosis ,Endothelial Dysfunction ,0301 basic medicine ,Pathology ,Cirrhosis ,Liver fibrosis ,LSEC, liver sinusoidal endothelial cell ,CD34 ,Transcriptome ,Pathogenesis ,Mice ,0302 clinical medicine ,GSEA, gene set enrichment analysis ,FACS, fluorescence-activated cell sorting ,Endothelial dysfunction ,Receptor ,Carbon Tetrachloride ,Original Research ,GFP, green fluorescent protein ,scRNA-seq, single-cell RNA sequencing ,0303 health sciences ,Chemistry ,Gastroenterology ,eNOS, endothelial nitric oxide synthase ,Portal Hypertension ,HSC, hepatic stellate cell ,3. Good health ,Lymphatic system ,KLF2 ,qPCR, quantitative polymerase chain reaction ,Liver Fibrosis ,LyEC, lymphatic endothelial cell ,030211 gastroenterology & hepatology ,Single-Cell Analysis ,medicine.medical_specialty ,Single cell transcriptomics ,PBS, phosphate-buffered saline ,BDL, bile duct ligation ,Biology ,Endocytosis ,α-SMA, α-smooth muscle actin ,cDNA, complementary DNA ,03 medical and health sciences ,Lymphatic Endothelial Cells ,Downregulation and upregulation ,scRNA-seq ,medicine ,Animals ,EndMT, endothelial-to-mesenchymal transition ,lcsh:RC799-869 ,030304 developmental biology ,NO, nitric oxide ,Hepatology ,EC, endothelial cell ,Endothelial Cells ,RNA ,medicine.disease ,Capillaries ,030104 developmental biology ,Gene Expression Regulation ,lcsh:Diseases of the digestive system. Gastroenterology ,NPC, nonparenchymal cell - Abstract
Background Dysfunction of liver sinusoidal endothelial cells (LSECs) is permissive for the progression of liver fibrosis and cirrhosis and responsible for its clinical complications. Here, we have mapped the spatial distribution of heterogeneous liver ECs in normal vs cirrhotic mouse livers and identified zone-specific transcriptomic changes of LSECs associated with liver cirrhosis using scRNA-seq technology. Approach & Results Cirrhosis was generated in endothelial specific green fluorescent protein (GFP) reporter mice through carbon tetrachloride inhalation for 12 weeks. GFP-positive liver EC populations were isolated from control and cirrhotic mice by FACS. We identified 6 clusters of liver EC populations including 3 clusters of LSECs, 2 clusters of vascular ECs and 1 cluster of lymphatic ECs. Based on previously reported LSEC-landmarks, we mapped the 3 clusters of LSECs in zones 1, 2, and 3, and determined phenotypic changes in each zone between control and cirrhotic mice. We found genes representing capillarization of LSECs (eg, CD34) as well as extracellular matrix genes were most upregulated in LSECs of zone 3 in cirrhotic mice, which may contribute to the development of basement membranes. LSECs in cirrhotic mice also demonstrated decreased expression of endocytic receptors, most remarkably in zone 3. Transcription factors (Klf2 [Kruppel-like factor-2], Klf4 [Kruppel-like factor-4], and AP-1) that induce nitric oxide production in response to shear stress were downregulated in LSECs of all zones in cirrhotic mice, implying increased intrahepatic vascular resistance. Conclusion This study deepens our knowledge of the pathogenesis of liver cirrhosis at a spatial, cell-specific level, which is indispensable for the development of novel therapeutic strategies to target the most dysfunctional liver ECs., Graphical abstract
- Published
- 2020
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