1. Possible role of intragenic DNA hypermethylation in gene silencing of the tumor suppressor gene NR4A3 in acute myeloid leukemia
- Author
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Atsushi Iwama, Chiaki Nakaseko, Yusuke Takeda, Masahiro Takeuchi, Koutaro Yokote, Emi Togasaki, Emiko Sakaida, Shuhei Koide, Tomoya Muto, Shokichi Tsukamoto, Tohru Iseki, Yusuke Isshiki, Naoya Mimura, Shio Sakai, Kwangmin Choi, Chikako Ohwada, Daniel T. Starczynowski, Nagisa Hasegawa, Chika Kawajiri-Manako, Kazumasa Aoyama, Yuhei Nagao, and Ryo Shimizu
- Subjects
Adult ,Male ,0301 basic medicine ,Antimetabolites, Antineoplastic ,Receptors, Steroid ,Cancer Research ,Tumor suppressor gene ,Bisulfite sequencing ,Biology ,Decitabine ,Article ,03 medical and health sciences ,Exon ,0302 clinical medicine ,hemic and lymphatic diseases ,medicine ,Humans ,Gene silencing ,Genes, Tumor Suppressor ,Gene Silencing ,Cells, Cultured ,Aged ,Receptors, Thyroid Hormone ,Gene Expression Regulation, Leukemic ,Myeloid leukemia ,Exons ,Hematology ,DNA Methylation ,Middle Aged ,medicine.disease ,Molecular biology ,DNA-Binding Proteins ,Leukemia, Myeloid, Acute ,Leukemia ,030104 developmental biology ,Oncology ,CpG site ,Case-Control Studies ,030220 oncology & carcinogenesis ,DNA methylation ,Azacitidine ,Cancer research ,CpG Islands ,Female ,Blast Crisis - Abstract
Expression of the tumor suppressor gene NR4A3 is silenced in the blasts of acute myeloid leukemia (AML), irrespective of the karyotype. Although the transcriptional reactivation of NR4A3 is considered to have a broad-spectrum anti-leukemic effect, the therapeutic modalities targeting this gene have been hindered by our minimal understanding of the transcriptional mechanisms regulating its expression, particularly in human AML. Here we show the role of intragenic DNA hypermethylation in reducing the expression of NR4A3 in AML. Bisulfite sequencing analysis revealed that CpG sites at the intragenic region encompassing exon 3 of NR4A3, but not the promoter region, are hypermethylated in AML cell lines and primary AML cells. A DNA methyltransferase inhibitor restored the expression of NR4A3 following a reduction in DNA methylation levels at intragenic CpG sites. The in silico data revealed an enrichment of H3K4me1 and H2A.Z at exon 3 of NR4A3 in human non-malignant cells but that was excluded specifically in leukemia cells with CpG hypermethylation. This suggests that exon 3 represents a functional regulatory element involved in the transcriptional regulation of NR4A3. Our findings improve the current understanding of the mechanism underlying NR4A3 silencing and facilitate the development of NR4A3-targeted therapy.
- Published
- 2016
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