312 results on '"Ellen E. Stobberingh"'
Search Results
2. Distribution of serotypes and patterns of antimicrobial resistance among commensal Streptococcus pneumoniae in nine European countries
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Rachid Y. Yahiaoui, Hester J. Bootsma, Casper D. J. den Heijer, Gerlinde N. Pluister, W. John Paget, Peter Spreeuwenberg, Krzysztof Trzcinski, and Ellen E. Stobberingh
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Streptococcus pneumoniae ,Vaccination ,Carriage ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Streptococcus pneumoniae is a commensal of the human upper respiratory tract and a major cause of morbidity and mortality worldwide. This paper presents the distribution of serotypes and antimicrobial resistance in commensal S. pneumoniae strains cultured from healthy carriers older than four years of age in nine European countries. Methods Nasal swabs from healthy persons (age between 4 and 107 years old) were obtained by general practitioners from each country from November 2010 to August 2011. Swabs were cultured for S. pneumoniae using a standardized protocol. Antibiotic resistance was determined for isolated S. pneumoniae by broth microdilution. Capsular sequencing typing was used to identify serotypes, followed by serotype-specific PCR assays in case of ambiguous results. Results Thirty-two thousand one hundred sixty-one nasal swabs were collected from which 937 S. pneumoniae were isolated. A large variation in serotype distribution and antimicrobial resistant serotypes across the participating countries was observed. Pneumococcal vaccination was associated with a higher risk of pneumococcal colonization and antimicrobial resistance independently of country and vaccine used, either conjugate vaccine or PPV 23). Conclusions Serotype 11A was the most common in carriage followed by serotypes 23A and 19A. The serotypes showing the highest resistance to penicillin were 14 followed by 19A. Serotype 15A showed the highest proportion of multidrug resistance.
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- 2018
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3. Methicillin-resistant S. aureus (MRSA), extended-spectrum (ESBL)- and plasmid-mediated AmpC ß-lactamase -producing Gram-negative bacteria associated with skin and soft tissue infections in hospital and community settings
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Selma Uzunović, Branka Bedenić, Ana Budimir, Amir Ibrahimagić, Farah Kamberović, Zlatko Fiolić, Michelle I. A. Rijnders, and Ellen E. Stobberingh
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surgical wound infections ,CTX-M beta-lactamase ,MLST CC152 ,antibiotic resistance ,Medicine - Abstract
Aim To investigate the characteristics of meticillin-resistant S. aureus (MRSA), extended-spectrum (ESBL), and plasmid-mediated AmpC beta-lactamase producing Gram-negative bacteria causing skin and soft tissue infections (SSTIs) in hospital and outpatient settings of Zenica-Doboj Canton, Bosnia and Herzegovina. Methods Antibiotic susceptibility was determined by disc-diffusion and broth microdillution methods according to CLSI guidelines. MecA gene was detected by PCR, and genetic characterization of MRSA was performed using spa-typing and the algorithm based upon repeat patterns (BURP). Double-disk-synergy test was used to screen for ESBLs. PCR was used to detect blaESBL alleles. Genetic relatedness of the strains was tested by PFGE. Results Seventeen in-patients with MRSA, 13 with ESBL-producing Gram-negative bacteria and three patients co-infected with both, were detected. Five MRSA and 16 ESBL-producing Gramnegative bacteria were found in outpatient samples. Klebsiella spp. was isolated in 11 in- and seven outpatients. MLST CC152 was the most prevalent MRSA. Seven (38.9%) Klebsiella spp. yielded amplicons with primers specific for SHV, TEM-1 and CTXM group 1 β-lactamases. Eight K. pneumonia (44.4%) and 16 (64%) MRSA (including the in- and outpatient) strains were clonally related. Conclusion The presence of MRSA and ESBL-producing organisms causing SSTIs in the community poses a substantial concern, due to the high morbidity and mortality associated with possible consequent hospital infections.
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- 2015
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4. High Rates of Antimicrobial Drug Resistance Gene Acquisition after International Travel, the Netherlands
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Christian J.H. von Wintersdorff, John Penders, Ellen E. Stobberingh, Astrid M.L. Oude Lashof, Christian J.P.A. Hoebe, Paul H.M. Savelkoul, and Petra F.G. Wolffs
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ESBL ,CTX-M ,quinolone ,resistance genes ,qnrB ,qnrS ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We investigated the effect of international travel on the gut resistome of 122 healthy travelers from the Netherlands by using a targeted metagenomic approach. Our results confirm high acquisition rates of the extended-spectrum β-lactamase encoding gene blaCTX-M, documenting a rise in prevalence from 9.0% before travel to 33.6% after travel (p
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- 2014
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5. Cross-Border Dissemination of Methicillin-Resistant Staphylococcus aureus, Euregio Meuse-Rhin Region
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Ruud H. Deurenberg, Eric Nulens, Havard Valvatne, Silvie Sebastian, Christel Driessen, Jos Craeghs, Els De Brauwer, Bernhard Heising, Yvette J. Kraat, Joachim Riebe, Frans S. Stals, Thera A. Trienekens, Jacques Scheres, Alexander W. Friedrich, Frank H. Van Tiel, Patrick S. Beisser, and Ellen E. Stobberingh
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Antimicrobial resistance ,staphylococci ,cross-border healthcare ,MRSA ,Euregio Meuse-Rhin ,MLST ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Because the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) differs among the 3 countries forming the Euregio Meuse-Rhin (EMR) region (Belgium, Germany, and the Netherlands), cross-border healthcare requires information about the spread of MRSA in the EMR. We investigated the emergence, dissemination, and diversity of MRSA clones in the EMR by using several typing methods. MRSA associated with clonal complexes 5, 8, 30, and 45 was disseminated throughout the EMR. Dutch isolates, mainly associated with sequence types (ST) ST5-MRSA-II, ST5-MRSA-IV, ST8-MRSA-IV, and ST45-MSRA-IV had a more diverse genetic background than the isolates from Belgium and Germany, associated with ST45-MRSA-IV and ST5-MRSA-II, respectively. MRSA associated with pigs (ST398-MRSA-IV/V) was found in the Dutch area of the EMR. Five percent of the MRSA isolates harbored Panton-Valentine leukocidin and were classified as community-associated MRSA associated with ST1, 8, 30, 80, and 89.
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- 2009
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6. The human microbiome as a reservoir of antimicrobial resistance
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John ePenders, Ellen E. Stobberingh, Paul H. M. Savelkoul, and Petra eWolffs
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Metagenomics ,microbiome ,antimicrobial resistance ,Gut Microbiota ,resistome ,Microbiology ,QR1-502 - Abstract
The gut microbiota is amongst the most densely populated microbial ecosystem on earth. While the microbiome exerts numerous health beneficial functions, the high density of microorganisms within this ecosystem also facilitates horizontal transfer of antimicrobial resistance (AMR) genes to potential pathogenic bacteria. Over the past decades antibiotic susceptibility testing of specific indicator bacteria from the microbiome, such as Escherichia coli, has been the method of choice in most studies. These studies have greatly enlarged our understanding on the prevalence and distribution of AMR and associated risk factors.Recent studies using (functional) metagenomics, however, highlighted the unappreciated diversity of AMR genes in the human microbiome and identified genes that had not been described previously. Next to metagenomics, more targeted approaches such as PCR for detection and quantification of AMR genes within a population are promising, in particular for large-scale epidemiological screening. Here we present an overview of the indigenous microbiota as a reservoir of AMR genes, the current knowledge on this resistome and the recent and upcoming advances in the molecular diagnostic approaches to unravel this reservoir.
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- 2013
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7. Antibiotic resistance of Escherichia coli isolated from uncomplicated UTI in general practice patients over a 10-year period
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A Meima, Annelies Verbon, A A van Driel, Gé Donker, D W Notermans, Marlies Mulder, Ellen E. Stobberingh, Med Microbiol, Infect Dis & Infect Prev, RS: CAPHRI - R4 - Health Inequities and Societal Participation, Medical Microbiology & Infectious Diseases, and Epidemiology
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0301 basic medicine ,Antibiotic resistance ,General Practice ,Antibiotics ,Urine ,SUSCEPTIBILITY ,medicine.disease_cause ,0302 clinical medicine ,Community-acquired ,030212 general & internal medicine ,Child ,Escherichia coli Infections ,Netherlands ,Aged, 80 and over ,Drug Resistance, Microbial ,General Medicine ,Middle Aged ,Antimicrobial ,Uncomplicated urine tract infections ,Anti-Bacterial Agents ,PREVALENCE ,Ciprofloxacin ,COMMUNITY ,Infectious Diseases ,Urinary Tract Infections ,Original Article ,Female ,SPREAD ,medicine.drug ,Adult ,Microbiology (medical) ,medicine.medical_specialty ,Adolescent ,medicine.drug_class ,030106 microbiology ,Microbial Sensitivity Tests ,Fosfomycin ,beta-Lactamases ,URINARY-TRACT-INFECTIONS ,Young Adult ,03 medical and health sciences ,ESBL-PRODUCING ENTEROBACTERIACEAE ,Internal medicine ,Escherichia coli ,medicine ,Humans ,Medical prescription ,LACTAMASE-PRODUCING ENTEROBACTERIACEAE ,Aged ,ANTIMICROBIAL RESISTANCE ,business.industry ,CONSUMPTION ,ESBLs ,RISK-FACTORS ,business - Abstract
Recommendations of first choice antibiotic therapy need to be based on actual antibiotic susceptibility data. We determined the antibiotic susceptibility of E. coli in uncomplicated UTI among women and compared the results with 2004 and 2009. In 30 sentinel general practitioner practices of Nivel Primary Care database, urine samples were collected from women with symptoms of uncomplicated UTI. Patient characteristics, E. coli susceptibility, and ESBL production were analyzed. Six hundred eighty-nine urine samples were collected; E. coli was the most isolated uropathogen (83%). Antibiotic susceptibility was stable over time except for ciprofloxacin (96% in 2004, 97% in 2009, and 94% in 2014; P 70 years (P = 0.005). In 2014, prescription of fosfomycin increased compared to 2009 (14.3% versus 5.6%) at the expense of co-amoxiclav, co-trimoxazole, and fluoroquinolones (P
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- 2019
8. Obtaining nasal and rectal swabs from general practice patients to assess carriage of antibiotic resistant microorganisms: a feasibility study
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Wilbert van Oorschot, Emina Omeragic, Margreet C. Vos, Jan Hendrik Richardus, Maaike Honsbeek, Ellen E. Stobberingh, Aimée Tjon-A-Tsien, Hélène Voeten, Med Microbiol, Infect Dis & Infect Prev, RS: CAPHRI - R4 - Health Inequities and Societal Participation, Public Health, and Medical Microbiology & Infectious Diseases
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Adult ,medicine.medical_specialty ,Antibiotic resistance ,prevalence ,General Practice ,EXTENDED-SPECTRUM ,Asymptomatic ,03 medical and health sciences ,ESBL-PRODUCING ENTEROBACTERIACEAE ,0302 clinical medicine ,General Practitioners ,medicine ,Humans ,030212 general & internal medicine ,LACTAMASE-PRODUCING ENTEROBACTERIACEAE ,Nose ,patient recruitment ,0303 health sciences ,030306 microbiology ,business.industry ,Workload ,primary health ,TRAVELERS ,ADMISSION ,Anti-Bacterial Agents ,Patient recruitment ,COMMUNITY ,Carriage ,medicine.anatomical_structure ,Cross-Sectional Studies ,Nasal Swab ,Emergency medicine ,General practice ,RISK-FACTORS ,Feasibility Studies ,medicine.symptom ,Family Practice ,business - Abstract
Purpose The aim of this study was to assess the feasibility of obtaining nasal and rectal swabs from general practice patients for measuring carriage of antibiotic resistant microorganisms in an area in Rotterdam (the Netherlands) with low socioeconomic status and a large immigrant population. Methods Data collection was from May to December 2017, in one general practice in Rotterdam. We asked adults (≥18 years) visiting the general practitioner (GP) with complaints not related to infections for one nasal and two rectal swabs and tested these for highly resistant microorganisms (HRMOs). Indicators for feasibility were recruitment rate, implementation and acceptation of data collection procedures by the participants. Results We obtained a nasal swab from all included 234 patients and 164 (70%) also gave rectal swabs. On average, 3 out of 30 invited patients (10%) were recruited per day. The GPs considered the workload high to inform and refer to eligible patients for the study and did this inconsistently. Most participants experienced the rectal swab procedure as burdensome and preferred assistance of a medical assistant above self-swabbing. A monetary incentive increased the willingness to provide rectal swabs. Conclusions Obtaining (nasal and) rectal swabs from general practice patients for study purposes proved difficult. Lessons learnt from this feasibility study will help increase participation in HRMO prevalence studies among asymptomatic general practice patients.
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- 2020
9. Differentiation between Streptococcus pneumoniae and other viridans group streptococci by matrix-assisted laser desorption/ionization time of flight mass spectrometry
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Rachid Y. Yahiaoui, Wil H. F. Goessens, Ellen E. Stobberingh, Annelies Verbon, Medical Microbiology & Infectious Diseases, and RS: CAPHRI - R4 - Health Inequities and Societal Participation
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Microbiology (medical) ,Spectral peak analysis ,ACCURACY ,Matrix assisted laser desorption ionization time of flight ,medicine.disease_cause ,Mass spectrometry ,Sensitivity and Specificity ,DESORPTION IONIZATION-TIME ,Diagnosis, Differential ,MITIS GROUP ,Streptococcal Infections ,Streptococcus pneumoniae ,medicine ,Humans ,PSEUDOPNEUMONIAE ,Biomarkers spectra peak discovery ,Chromatography ,biology ,IDENTIFICATION ,Chemistry ,Protein database ,Viridans group streptococci ,General Medicine ,Viridans Streptococci ,biology.organism_classification ,Bacterial Typing Techniques ,Molecular Typing ,Infectious Diseases ,MALDI TOF ,Viridans streptococci ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Mass spectrum ,Time-of-flight mass spectrometry - Abstract
OBJECTIVES: Matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) is becoming the method of choice for bacterial identification. However, correct identification by MALDI-TOF of closely related microorganisms such as viridans streptococci is still cumbersome, especially in the identification of S. pneumoniae. By making use of additional spectra peaks for S. pneumoniae and other viridans group streptococci (VGS). We re-identified viridans streptococci that had been identified and characterized by molecular and phenotypic techniques by MALDI-TOF.METHODS: VGS isolates (n = 579), 496 S. pneumoniae and 83 non-S. pneumoniae were analysed using MALDI-TOF MS and the sensitivity and specificity of MALDI-TOF MS was assessed. Hereafter, mass spectra analysis was performed. Presumptive identification of proteins represented by discriminatory peaks was performed by molecular weight matching and the corresponding nucleotides sequences against different protein databases.RESULTS: Using the Bruker reference library, 495 of 496 S. pneumoniae isolates were identified as S. pneumoniae and one isolate was identified as non-S. pneumoniae. Of the 83 non-S. pneumoniae isolates, 37 were correctly identified as non-S. pneumoniae, and 46 isolates as S. pneumoniae. The sensitivity of the MALDI-TOF MS was 99.8% (95% confidence interval (CI) 98.9-100) and the specificity was 44.6% (95% CI 33.7-55.9). Eight spectra peaks were mostly present in one category (S. pneumoniae or other VGS) and absent in the other category and inversely. Two spectra peaks of these (m/z 3420 and 3436) were selected by logistic regression to generate three identification profiles. These profiles could differentiate between S. pneumoniae and other VGS with high sensitivity and specificity (99.4% and 98.8%, respectively).CONCLUSIONS: Spectral peaks analysis based identification is a powerful tool to differentiate S. pneumoniae from other VGS species with high specificity and sensitivity and is a useful method for pneumococcal identification in carriage studies. More research is needed to further confirm our findings. Extrapolation of these results to clinical strains need to be deeply investigated.
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- 2020
10. Wees alert op ESBL-producerende bacteriën
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Antoinette Agatha van Driel, Annelies Verbon, and Ellen E. Stobberingh
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0301 basic medicine ,03 medical and health sciences ,030106 microbiology ,Family Practice - Abstract
Wereldwijd raken steeds meer mensen geinfecteerd door extended-spectrumbetalactamase (ESBL) producerende bacterien. Zagen we ESBL-infecties aanvankelijk vooral in ziekenhuizen, nu krijgen ook huisartsen ermee te maken. Dit komt door de veranderde samenstelling van de (patienten) populatie en doordat ziekenhuiszorg zich verplaatst naar de huisarts. Bij een infectie door een ESBL-producerende bacterie (EPB) kan de standaardbehandeling niet aanslaat. Huisartsen moeten hierop bedacht zijn als een standaardbehandeling bij infecties faalt en risicofactoren voor dragerschap van EPB aanwezig zijn. Samenwerking tussen de eerste en tweede lijn is essentieel voor de aanpak van dit groeiende probleem.
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- 2018
11. Urinary tract infections in long-term care facility residents
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Jobje Haayman, Ellen E. Stobberingh, Med Microbiol, Infect Dis & Infect Prev, and RS: FHML non-thematic output
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Male ,Microbiology (medical) ,medicine.medical_specialty ,SYMPTOMS ,Urinary system ,MEDLINE ,Drug resistance ,030501 epidemiology ,Microbiology ,Residential Facilities ,Body Temperature ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Dysuria ,Internal medicine ,MANAGEMENT ,medicine ,Humans ,Dementia ,Dementia diagnosis ,antimicrobial resistance ,030212 general & internal medicine ,long-term care facility (LTCF) ,Urinary tract infection (UTI) ,Aged ,Hematuria ,CHALLENGES ,Diagnostic Tests, Routine ,business.industry ,DEMENTIA ,Delirium ,Drug Resistance, Microbial ,NURSING-HOME RESIDENTS ,medicine.disease ,Long-Term Care ,Anti-Bacterial Agents ,urinary tract infection (UTI) ,Long-term care ,Urinary Incontinence ,Urinary Tract Infections ,Female ,0305 other medical science ,business ,RESISTANCE - Published
- 2018
12. Rapid assessment of antimicrobial resistance prevalence using a Lot Quality Assurance sampling approach
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Mariëlle A. J. Beerepoot, Casper D J den Heijer, Suzanne E. Geerlings, Frank van Leth, Ellen E. Stobberingh, Constance Schultsz, APH - Methodology, APH - Global Health, AII - Infectious diseases, Global Health, Infectious diseases, APH - Quality of Care, MUMC+: DA MMI Toegelatenen (9), Promovendi PHPC, Med Microbiol, Infect Dis & Infect Prev, and RS: FHML non-thematic output
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,empirical treatment ,Concordance ,030106 microbiology ,TRACHOMA ,Microbiology ,Sensitivity and Specificity ,Double blind ,DOUBLE-BLIND ,03 medical and health sciences ,0302 clinical medicine ,Antibiotic resistance ,Anti-Infective Agents ,SURVEILLANCE ,Statistics ,Drug Resistance, Bacterial ,medicine ,Escherichia coli ,Prevalence ,Humans ,Lot Quality Assurance Sampling ,antimicrobial resistance ,030212 general & internal medicine ,Escherichia coli Infections ,business.industry ,WOMEN ,Rapid assessment ,Surgery ,Empirical treatment ,Urinary Tract Infections ,TRIAL ,Female ,Lot quality assurance sampling ,urinary tract infection ,business ,Epidemiologic Methods ,ANTIBIOTICS - Abstract
Aim: Increasing antimicrobial resistance (AMR) requires rapid surveillance tools, such as Lot Quality Assurance Sampling (LQAS). Materials & methods: LQAS classifies AMR as high or low based on set parameters. We compared classifications with the underlying true AMR prevalence using data on 1335 Escherichia coli isolates from surveys of community-acquired urinary tract infection in women, by assessing operating curves, sensitivity and specificity. Results: Sensitivity and specificity of any set of LQAS parameters was above 99% and between 79 and 90%, respectively. Operating curves showed high concordance of the LQAS classification with true AMR prevalence estimates. Conclusion: LQAS-based AMR surveillance is a feasible approach that provides timely and locally relevant estimates, and the necessary information to formulate and evaluate guidelines for empirical treatment.
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- 2017
13. Surveillance of antimicrobial use in Dutch long-term care facilities
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Monique Roukens, Stephanie Natsch, Ellen E. Stobberingh, and L Verhoef
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Male ,0301 basic medicine ,Microbiology (medical) ,Staphylococcus aureus ,medicine.medical_specialty ,medicine.drug_class ,030106 microbiology ,Antibiotics ,Pharmacy ,Amoxicillin-Potassium Clavulanate Combination ,03 medical and health sciences ,Antibiotic resistance ,Anti-Infective Agents ,Surveys and Questionnaires ,Drug Resistance, Bacterial ,Escherichia coli ,medicine ,Humans ,Pharmacology (medical) ,Antibiotic use ,Intensive care medicine ,Aged ,Netherlands ,Aged, 80 and over ,Pharmacies ,Pharmacology ,business.industry ,Drug Administration Routes ,Middle Aged ,Long-Term Care ,Anti-Bacterial Agents ,Nursing Homes ,Care facility ,Long-term care ,lnfectious Diseases and Global Health Radboud Institute for Health Sciences [Radboudumc 4] ,Infectious Diseases ,Antimicrobial use ,Nitrofurantoin ,Epidemiological Monitoring ,Emergency medicine ,Female ,business ,Fluoroquinolones ,medicine.drug - Abstract
Item does not contain fulltext Objectives: : Residents living in a long-term care facility (LTCF) are more susceptible to infections. Treatment with antimicrobials is sometimes necessary; however, antibiotic use is considered one of the most important drivers of the development of antibiotic resistance. Surveillance data on antibiotic use in these LTCFs are necessary to get more insight into these patterns. The objective of this study was to describe antibiotic use in LTCFs in the Netherlands. Methods: : One hundred and seventy-seven LTCFs in the Netherlands were contacted and asked to participate in a study concerning antibiotic resistance and antibiotic use. Associated pharmacies were asked to provide data about systemic antibiotic use for each participating LTCF location over 1 year. Results on antibiotic use are reported here. Results: : Antibiotic use data from 96 LTCFs were collected from the pharmacies, and 68 of these LTCFs completed additional questionnaires on general characteristics of their location. Mean total use of systemic antimicrobials was 73 DDDs/1000 residents per day (range 2-197 DDDs/1000 residents per day). Co-amoxiclav (23 DDDs/1000 residents/day, range 0-70) was used the most, followed by nitrofurantoin derivatives (12 DDDs/1000 residents/day, range 0-38) and fluoroquinolones (12 DDDs/1000 residents/day, range 0-52). Statistical analysis revealed no significant correlations between the LTCF characteristics and the level of antibiotic use. Conclusions: There was a high use of broad-spectrum antimicrobials, with a large variation in total antibiotic use between individual locations. Further analysis of more in-depth data and possible influencing factors is needed.
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- 2017
14. Low antimicrobial resistance in general practice patients in Rotterdam, the city with the largest proportion of immigrants in the Netherlands
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Jan Hendrik Richardus, Maaike Honsbeek, Jurriaan E. M. de Steenwinkel, Damian C. Melles, Aimée Tjon-A-Tsien, Jan J. Lous, Ellen E. Stobberingh, Hélène Voeten, Medische Microbiologie, RS: CAPHRI - R4 - Health Inequities and Societal Participation, Medical Microbiology & Infectious Diseases, and Public Health
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0301 basic medicine ,Male ,Klebsiella pneumoniae ,Immigration ,General Practice ,EXTENDED-SPECTRUM ,Logistic regression ,Antimicrobial resistance ,0302 clinical medicine ,Medical microbiology ,Drug Resistance, Multiple, Bacterial ,Prevalence ,Medicine ,Uropathogenic Escherichia coli ,030212 general & internal medicine ,media_common ,Netherlands ,Aged, 80 and over ,biology ,General Medicine ,Bacterial Infections ,Middle Aged ,TRAVELERS ,Anti-Bacterial Agents ,COMMUNITY ,Infectious Diseases ,ESCHERICHIA-COLI ,CARRIAGE ,General practice ,Female ,Original Article ,Microbiology (medical) ,Adult ,medicine.medical_specialty ,Adolescent ,media_common.quotation_subject ,030106 microbiology ,Emigrants and Immigrants ,Microbial Sensitivity Tests ,URINARY-TRACT-INFECTIONS ,ESBL-PRODUCING ENTEROBACTERIACEAE ,03 medical and health sciences ,Young Adult ,Antibiotic resistance ,Humans ,LACTAMASE-PRODUCING ENTEROBACTERIACEAE ,Cities ,Socioeconomic status ,Proteus mirabilis ,Aged ,Retrospective Studies ,Bacteria ,business.industry ,biology.organism_classification ,Multiple drug resistance ,Socioeconomic Factors ,RISK-FACTORS ,business ,Demography - Abstract
Antimicrobial resistance (AMR) is an increasing problem. The prevalence of antimicrobial resistance in general practice patients is expected to be relatively high in Rotterdam, the Dutch city with the largest proportion non-Western immigrants. The aim of this study was to assess the prevalence of antibiotic-resistant uropathogens (Escherichia coli,Klebsiella pneumoniae, andProteus mirabilis) in general practices in Rotterdam, and to find a possible association between the prevalence of antibiotic-resistantE. coliand age, gender, and socioeconomic status (SES). A retrospective analysis was performed of urine samples from general practice patients in 2016. The prevalence of AMR in uropathogens was compared with national resistance data, as was the prevalence of highly and multidrug resistant and extended spectrum β-lactamase (ESBL) producingE. coliandK. pneumoniae.Univariate logistic regression was used to study associations between antibiotic-resistantE. coliand age, gender, and SES area score. No clinically relevant differences were observed in the prevalence of antibiotic-resistant uropathogens in Rotterdam compared with the national prevalence. ForE. coliandK. pneumoniae, the prevalence was 3.6% for ESBL production (both pathogens together), while the prevalence ranged between 4.2%–5.0% for high resistance and between 1.2%–3.3% for multidrug resistance. Ciprofloxacin-resistantE. coliwas significantly associated with higher age. Although Rotterdam has a high percentage of non-western immigrants and a low SES, AMR is low among general practice patients. This indicates that adherence to national guidelines in general practice enables maintenance of low AMR, even in high-risk populations.
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- 2019
15. Can the composition of the intestinal microbiota predict the development of urinary tract infections?
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Mariëlle A. J. Beerepoot, John Penders, Jan M. Prins, Ellen E. Stobberingh, Casper D. J. den Heijer, Suzanne E. Geerlings, Promovendi PHPC, MUMC+: DA MMI Toegelatenen (9), Medische Microbiologie, RS: CAPHRI - R4 - Health Inequities and Societal Participation, RS: NUTRIM - R2 - Gut-liver homeostasis, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, AII - Amsterdam institute for Infection and Immunity, APH - Amsterdam Public Health, Infectious diseases, and Oncology
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DNA, Bacterial ,0301 basic medicine ,Microbiology (medical) ,intestinal microbiota ,lactobacilli ,Time Factors ,Urinary system ,Microbial diversity ,Physiology ,postmenopausal women ,Biology ,urologic and male genital diseases ,Microbiology ,trimethoprim-sulfamethoxazole ,Feces ,03 medical and health sciences ,0302 clinical medicine ,fluids and secretions ,RNA, Ribosomal, 16S ,Trimethoprim, Sulfamethoxazole Drug Combination ,Humans ,030212 general & internal medicine ,16S rRNA pyrosequencing ,Phylogeny ,Microbiological Phenomena ,Postmenopausal women ,Probiotics ,Microbial composition ,Biodiversity ,Antibiotic Prophylaxis ,Middle Aged ,Fecal microbiota ,bacterial infections and mycoses ,female genital diseases and pregnancy complications ,Gastrointestinal Microbiome ,Postmenopause ,Lactobacillus ,030104 developmental biology ,Urinary Tract Infections ,Immunology ,Pyrosequencing ,Female ,prophylaxis ,urinary tract infection - Abstract
Aim: To evaluate whether intestinal microbiota predicts the development of new-onset urinary tract infections (UTIs) in postmenopausal women with prior recurrent UTIs (rUTIs). Patients & methods: Fecal samples (n = 40) originated from women with rUTI who received 12 months’ prophylaxis of either trimethoprim–sulfamethoxazole (TMP–SMX) or lactobacilli. Microbial composition was assessed by 16S rRNA pyrosequencing. Results: At baseline, fecal microbiota of women with zero and more than or equal to four UTIs during follow-up showed no significant differences. Only TMP–SMX prophylaxis resulted in reduced microbial diversity. Microbial structure of two samples from the same woman showed limited relatedness. Conclusion: In postmenopausal women with rUTI, the intestinal microbiota was not predictive for new-onset UTIs. Only TMP–SMX, and not lactobacilli, prophylaxis had effects on the microbial composition. Data in ENA:PRJEB13868.
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- 2016
16. Prevalence and antibiotic resistance of commensal Streptococcus pneumoniae in nine European countries
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Herman Goossens, François G. Schellevis, W. John Paget, Cathrien A. Bruggeman, Evelien M. E. van Bijnen, Mike Pringle, Ellen E. Stobberingh, Rachid Y. Yahiaoui, Casper D. J. den Heijer, MUMC+: DA MMI Toegelatenen (9), Medische Microbiologie, RS: FHML non-thematic output, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, EMGO - Quality of care, General practice, and APRES Study Team
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0301 basic medicine ,Microbiology (medical) ,Adult ,Male ,Pediatrics ,medicine.medical_specialty ,antibiotic resistance ,Adolescent ,medicine.drug_class ,030106 microbiology ,Antibiotics ,Microbial Sensitivity Tests ,medicine.disease_cause ,Microbiology ,Pneumococcal Infections ,03 medical and health sciences ,Young Adult ,Antibiotic resistance ,Drug Resistance, Multiple, Bacterial ,Streptococcus pneumoniae ,medicine ,Prevalence ,Humans ,Child ,Biology ,Respiratory tract infections ,nasal swab ,business.industry ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,Middle Aged ,Anti-Bacterial Agents ,Multiple drug resistance ,Community-Acquired Infections ,Europe ,030104 developmental biology ,Carriage ,Nasal Swab ,Child, Preschool ,Female ,business ,Cefaclor ,medicine.drug - Abstract
Item does not contain fulltext The human microbiota represents an important reservoir of antibiotic resistance. Moreover, the majority of antibiotics are prescribed in primary care. For this reason, we assessed the prevalence and antibiotic resistance of nasal carriage strains of Streptococcus pneumoniae, the most prevalent bacterial causative agent of community-acquired respiratory tract infections, in outpatients in nine European countries. Nasal swabs were collected between October 2010 and May 2011, from 32,770 patients, recruited by general practices in nine European countries. Overall prevalence of S. pneumoniae nasal carriage in the nine countries was 2.9%. The carriage was higher in men (3.7%) than in women (2.7%). Children (4-9 years) had a higher carriage prevalence (27.2%) compared with those older than 10 years (1.9%). The highest resistance observed was to cefaclor. The highest prevalence of multidrug resistance was found in Spain and the lowest prevalence was observed in Sweden.
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- 2016
17. Evaluation of phenotypic and molecular methods for identification of Streptococcus pneumoniae
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Casper D. J. den Heijer, Rachid Y. Yahiaoui, Cathrien A. Bruggeman, Ellen E. Stobberingh, Petra Wolfs, MUMC+: DA MMI Toegelatenen (9), MUMC+: DA MMI Moleculaire dia (9), MUMC+: DA MMI Management (9), RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and Medische Microbiologie
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0301 basic medicine ,Microbiology (medical) ,Identification methods ,030106 microbiology ,Biology ,medicine.disease_cause ,Sensitivity and Specificity ,Microbiology ,Pneumococcal Infections ,03 medical and health sciences ,chemistry.chemical_compound ,Bacteriolysis ,Bacterial Proteins ,bile solubility ,Streptococcus pneumoniae ,medicine ,Bile ,Humans ,High rate ,Bacteriological Techniques ,Quinine ,Optochin ,optochin ,Colony morphology ,medicine.disease ,Phenotype ,Anti-Bacterial Agents ,Europe ,Nasal Mucosa ,Pneumococcal infections ,PCR ,Molecular Diagnostic Techniques ,chemistry ,colony morphology ,identification ,Identification (biology) - Abstract
Aim: The objective of this study is to compare various Streptococcus pneumoniae identification methods. Materials & methods: In total, 1371 putative S. pneumoniae isolates were tested with three phenotypic methods and a molecular-based method targeting a virulence factor (CpsA). We assessed the sensitivity and the specificity of each method and widely used S. pneumoniae identification algorithm. Results: None of the methods or the identification algorithm used separately was able to correctly identify all S. pneumoniae isolates. Furthermore, a high rate of optochin resistance was found. Conclusions: We demonstrated the failure of the current S. pneumoniae identification methods and optochin susceptibility-based algorithm. In addition, the high rate of optochin resistance might justify the necessity of a close monitoring of optochin susceptibility.
- Published
- 2016
18. Electronic nose analysis of exhaled breath to diagnose ventilator-associated pneumonia
- Author
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Paul Roekaerts, Ronny M. Schnabel, Dennis C J J Bergmans, Agnieszka Smolinska, Ellen E. Stobberingh, Marie-Louise Boumans, R. Kaufmann, Med Microbiol, Infect Dis & Infect Prev, Farmacologie en Toxicologie, Anesthesiologie, RS: CAPHRI School for Public Health and Primary Care, and Intensive Care
- Subjects
Adult ,Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Microbiological culture ,Bronchoalveolar Lavage ,Sensitivity and Specificity ,law.invention ,Young Adult ,law ,Internal medicine ,Pneumonia, Bacterial ,medicine ,Humans ,Prospective Studies ,Electronic Nose ,Intensive care medicine ,Aged ,Aged, 80 and over ,Bacteria ,medicine.diagnostic_test ,business.industry ,Respiratory disease ,Area under the curve ,Ventilator-associated pneumonia ,Pneumonia, Ventilator-Associated ,Middle Aged ,bacterial infections and mycoses ,medicine.disease ,Intensive care unit ,respiratory tract diseases ,Pneumonia ,Bronchoalveolar lavage ,Breath Tests ,Breath gas analysis ,Case-Control Studies ,Female ,business ,Bronchoalveolar Lavage Fluid - Abstract
Background Exhaled breath analysis is an emerging technology in respiratory disease and infection. Electronic nose devices (e-nose) are small and portable with a potential for point of care application. Ventilator-associated pneumonia (VAP) is a common nosocomial infection occurring in the intensive care unit (ICU). The current best diagnostic approach is based on clinical criteria combined with bronchoalveolar lavage (BAL) and subsequent bacterial culture analysis. BAL is invasive, laborious and time consuming. Exhaled breath analysis by e-nose is non-invasive, easy to perform and could reduce diagnostic time. Aim of this study was to explore whether an e-nose can be used as a non-invasive in vivo diagnostic tool for VAP. Methods Seventy-two patients met the clinical diagnostic criteria of VAP and underwent BAL. In thirty-three patients BAL analysis confirmed the diagnosis of VAP [BAL+(VAP+)], in thirty-nine patients the diagnosis was rejected [BAL−]. Before BAL was performed, exhaled breath was sampled from the expiratory limb of the ventilator into sterile Tedlar bags and subsequently analysed by an e-nose with metal oxide sensors (DiagNose, C-it, Zutphen, The Netherlands). From further fifty-three patients without clinical suspicion of VAP or signs of respiratory disease exhaled breath was collected to serve as a control group [control(VAP−]). The e-nose data from exhaled breath were analysed using logistic regression. Results The ROC curve comparing [BAL+(VAP+)] and [control(VAP−)] patients had an area under the curve (AUC) of 0.82 (95% CI 0.73–0.9). The sensitivity was 88% with a specificity of 66%. The comparison of [BAL+(VAP+)] and [BAL−] patients revealed an AUC of 0.69; 95% CI 0.57–0.81) with a sensitivity of 76% with a specificity of 56%. Conclusion E-nose lacked sensitivity and specificity in the diagnosis of VAP in the present study for current clinical application. Further investigation into this field is warranted to explore the diagnostic possibilities of this promising new technique.
- Published
- 2015
19. Is a wound swab for microbiological analysis supportive in the clinical assessment of infection of a chronic wound?
- Author
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Thera A. M. Trienekens, Ruud J.G. Halfens, Jos M. G. A. Schols, Ellen E. Stobberingh, Kelly P T Thiesen, A.A.L.M. Rondas, Health Services Research, Family Medicine, Medische Microbiologie, RS: CAPHRI School for Public Health and Primary Care, RS: CAPHRI - R1 - Ageing and Long-Term Care, RS: CAPHRI - R4 - Health Inequities and Societal Participation, and RS: Academische Werkplaats Ouderenzorg
- Subjects
Adult ,Male ,Microbiology (medical) ,Chronic wound ,medicine.medical_specialty ,Adolescent ,swab ,wound assessment ,CULTURES ,Signs and symptoms ,DIAGNOSIS ,PATIENT ,Microbiology ,Young Adult ,Wound assessment ,Internal medicine ,medicine ,Humans ,VALIDITY ,Aged ,Wound clinic ,Aged, 80 and over ,Bacteriological Techniques ,IDENTIFICATION ,integumentary system ,Diagnostic Tests, Routine ,business.industry ,Bacterial Infections ,Middle Aged ,Prognosis ,Wound infection ,Dermatology ,infection ,clinical diagnosis ,wounds ,Chronic disease ,chronic wounds ,Clinical diagnosis ,Chronic Disease ,BACTERIA ,Wounds and Injuries ,wound infection ,Female ,BIOFILM ,medicine.symptom ,business - Abstract
Aim: To determine whether bacteriological analysis of a wound swab is supportive in the clinical assessment of infection of a chronic wound. Methods: Patients attending an outpatient wound clinic who had endured a chronic wound for more than 3 weeks were clinically assessed for infection. In addition, standardized wound swabs were taken according to the Levine technique and the microbiological findings of the swabs compared with the clinical assessment of the wounds. Results: There was no significant relationship between the clinical assessments of the chronic wounds and the qualitative or quantitative bacteriological results of the swabs. Conclusion: Microbiological analysis of wound swabs taken from chronic wounds to support clinical assessment of the wounds is waste of time and money. It may be preferable to assess chronic wounds clinically, however, validation studies of these signs and symptoms are needed.
- Published
- 2015
20. Cost analysis of one of the first outpatient wound clinics in the Netherlands
- Author
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A.A.L.M. Rondas, Jos M. G. A. Schols, Silvia M. A. A. Evers, Ellen E. Stobberingh, H.R. Hull, Ruud J.G. Halfens, Health Services Research, Family Medicine, Medische Microbiologie, RS: CAPHRI School for Public Health and Primary Care, RS: CAPHRI - R2 - Creating Value-Based Health Care, RS: CAPHRI - R1 - Ageing and Long-Term Care, and RS: Academische Werkplaats Ouderenzorg
- Subjects
Insurance, Health ,Nursing (miscellaneous) ,Cost effectiveness ,business.industry ,medicine.disease ,Test (assessment) ,Wound care ,Nursing ,Ambulatory care ,Chronic Disease ,Ambulatory Care ,Costs and Cost Analysis ,Health insurance ,Cost analysis ,Humans ,Wounds and Injuries ,Medicine ,Fundamentals and skills ,Medical emergency ,business ,Netherlands ,Cost database ,Cohort study - Abstract
Objective: To perform, from an insurance perspective, a cost analysis of one of the outpatient community wound care clinics in the Netherlands, the Knowledge Centre in Wound Care (KCWC) at Venray. Method: This study involved a cost analysis based on an observational cohort study with a one-year pre-admission and a one-year post-admission comparison of costs. Patients were included when they first consulted the outpatient wound care clinic. Participants were all insured by the same health insurance company, Coöperatie Volksgezondheidszorg (VGZ). A standard six-step procedure for performing cost studies was used to calculate the costs. Given the skewed cost data, non-parametric bootstrapping was used to test for statistical differences. Results: There were 172 patients included in this study. The difference in costs related to wound care between the year before and the year after initial admission to the wound clinic amounted to an average reduction of €2621 (£1873) per patient in the base case analysis. The categories ‘general practitioner’, ‘hospital care’, ‘mental health care’ and ‘transport’ scored lower, indicating lower costs, in the year after admission to the wound clinic. Conclusion: In this study, only the reimbursement data of patients of one health insurance company, and specifically only those made under the 2006 Dutch Health Insurance Act, were available. Because of the observational design, definitive conclusions cannot be made regarding a demonstrated reduction of costs in the year post admission. Nevertheless, this study is a first attempt of a cost analysis of an equipped outpatient wound clinic as an innovative way of responding to the increasing number of chronic wounds in the Netherlands. The calculations show that savings in wound care are possible. Declaration of interest: A possible conflict of interest should be mentioned. First author AALM Rondas, PhD student at Maastricht University, is working at the KCWC wound clinic at Venray in the Netherlands as a physician. However, the research data were provided externally by Coöperatie Volksgezondheidszorg (VGZ) and checked by the academic co-authors, none of whom have a conflict of interest. The authors have no financial or commercial interest to declare.
- Published
- 2015
21. Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction
- Author
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Abraham Goorhuis, Constance Schultsz, Astrid M. L. Oude Lashof, Martin P. Grobusch, Henri A. Verbrugh, Trung Nguyen Vinh, Damian C. Melles, Perry J.J. van Genderen, Ellen E. Stobberingh, John Penders, Jarne M van Hattem, Menno D. de Jong, Sébastien Matamoros, Nicky Molhoek, Niels Willemse, Martin C. J. Bootsma, Maris S. Arcilla, Ngo Thi Hoa, Med Microbiol, Infect Dis & Infect Prev, RS: CAPHRI - R4 - Health Inequities and Societal Participation, RS: NUTRIM - R2 - Liver and digestive health, RS: NUTRIM - R2 - Gut-liver homeostasis, Sub Mathematical Modeling, Mathematical Modeling, Medical Microbiology & Infectious Diseases, Medical Microbiology and Infection Prevention, AII - Infectious diseases, Other departments, Global Health, APH - Global Health, APH - Aging & Later Life, and Infectious diseases
- Subjects
0301 basic medicine ,Gene Transfer, Horizontal ,030106 microbiology ,Population ,lcsh:Medicine ,Biology ,medicine.disease_cause ,Genome ,ANNOTATION ,Article ,03 medical and health sciences ,Plasmid ,ENTEROBACTERIACEAE ,medicine ,Escherichia coli ,TOOL ,Animals ,Humans ,lcsh:Science ,education ,General ,Author Correction ,Gene ,Phylogeny ,030304 developmental biology ,Genetics ,0303 health sciences ,education.field_of_study ,Multidisciplinary ,ANTIMICROBIAL RESISTANCE ,Phylogenetic tree ,IDENTIFICATION ,030306 microbiology ,ACQUISITION ,Escherichia coli Proteins ,lcsh:R ,TRAVELERS ,Europe ,RESISTANCE GENE ,Horizontal gene transfer ,NOVOBIOCIN ,Multilocus sequence typing ,VIRULENCE ,lcsh:Q ,MCR-1 ,Mobile genetic elements ,Plasmids - Abstract
To understand the dynamics behind the worldwide spread of the mcr-1 gene, we determined the population structure of Escherichia coli and of mobile genetic elements (MGEs) carrying the mcr-1 gene. After a systematic review of the literature we included 65 E. coli whole genome sequences (WGS), adding 6 recently sequenced travel related isolates, and 312 MLST profiles. We included 219 MGEs described in 7 Enterobacteriaceae species isolated from human, animal and environmental samples. Despite a high overall diversity, 2 lineages were observed in the E. coli population that may function as reservoirs of the mcr-1 gene, the largest of which was linked to ST10, a sequence type known for its ubiquity in human faecal samples and in food samples. No genotypic clustering by geographical origin or isolation source was observed. Amongst a total of 13 plasmid incompatibility types, the IncI2, IncX4 and IncHI2 plasmids accounted for more than 90% of MGEs carrying the mcr-1 gene. We observed significant geographical clustering with regional spread of IncHI2 plasmids in Europe and IncI2 in Asia. These findings point towards promiscuous spread of the mcr-1 gene by efficient horizontal gene transfer dominated by a limited number of plasmid incompatibility types.
- Published
- 2017
22. Diagnostiek van urineweginfecties bij mannen
- Author
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Casper D J den Heijer, Ellen E. Stobberingh, Gé Donker, and Martien C. J. M. van Dongen
- Subjects
Family Practice - Abstract
Den Heijer CDJ, Van Dongen MCJM, Donker GA, Stobberingh EE. Diagnostiek van urineweginfecties bij mannen. Huisarts Wet 2014;57(8):390-4. De diagnostiek van urineweginfecties bij mannen leidt mogelijk tot overbehandeling in de huisartsenpraktijk. Wij formuleerden een beslisregel op basis van een dipsticktest en leeftijd (ouder dan 60 jaar), en gingen na in hoeverre die regel het beleid beinvloedde ten opzichte van de gebruikelijke praktijk. Surveillanceonderzoek binnen de peilstations van NIVEL Zorgregistraties eerste lijn over de periode van januari 2009 tot juli 2011. Via de participerende huisartsen verzamelden wij dipstickresultaten en overige klinische informatie. Bij 103 kolonievormende eenheden per ml urine beschouwden wij de urineweginfectie (UWI) als microbiologisch bevestigd. Wij vergeleken de sensitiviteit en de specificiteit van de beslisregel met die van de gebruikelijke zorg (antibiotica bij een bevestigde urineweginfectie, geen antibiotica bij een niet-bevestigde urineweginfectie). Wij beschikten over de complete gegevens van 490/603 (81%) mannen. Bij 321/490 (66%) werd een UWI bevestigd. De beslisregel adviseert een antibioticum voor te schrijven aan patienten met een positieve nitriettest en aan patienten ouder dan 60 jaar met een positieve leukocytenesterasetest. Bij negatieve testuitslagen was de kans op een UWI 40%, bij mannen jonger dan 60 jaar 29%. De sensitiviteit en de specificiteit van de beslisregel weken niet significant af van die van gebruikelijke zorg: respectievelijk 75% versus 79%, en 70% versus 63% (beide p > 0,05). In de praktijk verbetert de door ons opgestelde beslisregel de diagnostiek van urineweginfecties bij mannen niet. Wanneer er ondanks een negatieve dipstick toch enige verdenking op een urineweginfectie blijft bestaan, volstaat een afwachtend empirisch antibioticumbeleid aangezien de kans op een infectie relatief klein is.
- Published
- 2014
23. Application of an electronic nose in the diagnosis of head and neck cancer
- Author
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Bernd Kremer, Ellen E. Stobberingh, Alfons G. H. Kessels, Nicoline Leunis, Marie-Louise Boumans, Sinh Din, Kenneth W. Kross, RS: CAPHRI School for Public Health and Primary Care, MUMC+: KIO Kemta (9), Med Microbiol, Infect Dis & Infect Prev, KNO, Epidemiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: GROW - Oncology, RS: CAPHRI - Public Health: Infectious diseases and antibiotic resistance, and RS: GROW - R2 - Basic and Translational Cancer Biology
- Subjects
Adult ,Male ,medicine.medical_specialty ,VOLATILE ORGANIC-COMPOUNDS ,Sensitivity and Specificity ,Electronic nose ,Cohort Studies ,Tertiary Care Centers ,LUNG-CANCER ,volatile organic compounds ,medicine ,Carcinoma ,otorhinolaryngologic diseases ,Outpatient clinic ,Humans ,PNEUMONIA SCORE ,Aged ,business.industry ,Squamous Cell Carcinoma of Head and Neck ,Head and neck cancer ,Case-control study ,Exhalation ,IN-VITRO ,Middle Aged ,medicine.disease ,Head and neck squamous-cell carcinoma ,SENSOR ARRAY ,Surgery ,stomatognathic diseases ,Logistic Models ,BREATH ,Otorhinolaryngology ,Breath Tests ,ROC Curve ,Head and Neck Neoplasms ,DISCRIMINATION ,Case-Control Studies ,CARCINOMAS ,Carcinoma, Squamous Cell ,Female ,head and neck cancer ,Radiology ,MYCOBACTERIUM-TUBERCULOSIS ,business ,SYSTEM ,Cohort study - Abstract
Objectives/HypothesisElectronic nose (E-nose) technology has various applications such as the monitoring of air quality and the detection of explosive and chemical agents. We studied the diagnostic accuracy of volatile organic compounds (VOC) pattern analysis in exhaled breath by means of an E-nose in patients with head and neck squamous cell carcinoma (HNSCC).Study DesignCohort study. Exhaled breath samples from patients with HNSCC were analyzed by using an E-Nose.MethodsThirty-six patients diagnosed with HNSCC exhaled into a 5-litre Tedlar bag. The control group consisted of 23 patients visiting the outpatient clinic for other (benign) conditions. Air samples were analyzed using an E-nose.ResultsLogistic regression showed a significant difference (P ConclusionsE-nose application holds a promising potential for application in the diagnosis of HNSCC due to its rapid, simple, and noninvasive nature.
- Published
- 2014
24. Molecular Characterization of Methicillin-Susceptible And Methicillin- Resistant Staphylococcus aureus in Food Handlers in Bosnia and Herzegovina
- Author
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Farah Kamberović, Ellen E. Stobberingh, Amir Ibrahimagić, Selma Uzunović, and M. I. A. Rijnders
- Subjects
Veterinary medicine ,Food handlers ,medicine.drug_class ,business.industry ,SCCmec ,Antibiotics ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,medicine.disease_cause ,Microbiology ,Methicillin-resistant Staphylococcus aureus ,Methicillin resistance ,Infectious Diseases ,Staphylococcus aureus ,polycyclic compounds ,medicine ,bacteria ,Multilocus sequence typing ,Parasitology ,Coagulase ,business - Abstract
Objectives: To determine the prevalence and genetic background of methicillin-sensitive (MSSA) and methicillin-resistant Staphylococcus aureus (MRSA) obtained from healthy food handlers admitted to the Cantonal Public Health Institute of Zenica, Bosnia and Herzegovina, during 2007-2009. Methods: S. aureus were isolated and identified using standard microbiological methods including coagulase and catalase tests. Antibiotic susceptibility testing by disc diffusion method was performed according to the CLSI guidelines. Methicillin resistance was confirmed by the presence of the mecA gene by PCR. The genetic characterization was performed using spa-typing and BURP algorithm. Results: A total of 189 non-duplicated S. aureus isolates were collected from 13 690 nasal swabs (1.4%), of which three were MRSA (1.6%). Among 173 MSSA analyzed, 66 spa types were clustered into nine spa-CCs, four no founders, and singletons. The MSSA spa-CC015 associated with MLST CC45 was predominant, having 41 (24%) strains. All three MRSA were associated with MLST 152 (spa-CC 355/595) which was not found in MSSA isolates. MRSA-related background had 60% MSSA isolates. There were 127 (71%) MSSA and one MRSA sensitive to all antibiotic tested (the beta-lactam compounds excepted); multi-drug resistance was found in 13 (7.3%) of MSSA. Conclusion: Very low prevalence of S. aureus, as well as MRSA was noted. MSSA were more heterogeneous than MRSA. Although the number of MSSA with a genetic background common to MRSA clones was high, the prevalence of MRSA was low, and MLST CC152 of MRSA was not found among MSSA isolates suggesting that MRSA did not arise from predominant MSSA clones.
- Published
- 2014
25. CD14/Toll-like receptors interact with bacteria and regulatory T-cells in the development of childhood asthma
- Author
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Quirijn Jöbsis, Ester M.M. Klaassen, Edward Dompeling, M. Soeteman, G. van Eys, Jan Damoiseaux, K.D.G. van de Kant, O C P van Schayck, Foekje Stelma, Marieke Quaak, Ellen E. Stobberingh, RS: CAPHRI School for Public Health and Primary Care, RS: NUTRIM - R4 - Gene-environment interaction, Genetica & Celbiologie, MUMC+: DA CDL Algemeen (9), Epidemiologie, RS: CAPHRI - Asthma and COPD, RS: CAPHRI - Public Health: Infectious diseases and antibiotic resistance, Farmacologie en Toxicologie, Moleculaire Genetica, Kindergeneeskunde, Interne Geneeskunde, Medische Microbiologie, and Family Medicine
- Subjects
Pulmonary and Respiratory Medicine ,Allergy ,Genotype ,CD14 ,Buccal swab ,Lipopolysaccharide Receptors ,Single-nucleotide polymorphism ,T-Lymphocytes, Regulatory ,Immune system ,medicine ,Humans ,Genetic Predisposition to Disease ,Longitudinal Studies ,Prospective Studies ,Child ,Netherlands ,Respiratory Sounds ,Asthma ,Innate immune system ,Bacteria ,business.industry ,Toll-Like Receptors ,Genetic Variation ,Environmental Exposure ,Sequence Analysis, DNA ,Flow Cytometry ,medicine.disease ,Immunity, Innate ,TLR2 ,Phenotype ,lnfectious Diseases and Global Health Radboud Institute for Health Sciences [Radboudumc 4] ,Case-Control Studies ,Immunology ,business - Abstract
To the Editor: The susceptibility to asthma development in childhood is influenced by genetic as well as environmental factors, and interactions between these factors [1–3]. However, at present, their exact role is still largely undetermined. Genetic variations in the innate immune system may lead to different adaptive immune responses to bacteria and may therefore vary the development of asthma [2, 4, 5]. We performed a prospective longitudinal study in preschool children, in which we determined polymorphisms in Toll-like receptors ( TLR s) and CD14 , the presence of bacteria, and the proportion of regulatory T-cells (Treg) all in relation to an asthma diagnosis at 6 years of age. We hypothesise that specific genetic variants in genes that affect the innate immune system influence the response to bacteria and the recruitment of Treg in preschool children, leading to an increased likelihood of asthma at 6 years of age. The Asthma DEtection and Monitoring (ADEM) study is a long-term prospective case–control study. A detailed protocol of this study has previously been published [6]. A total of 202 children who had experienced at least two wheezing episodes during their lifetime (International Study of Asthma and Allergies in Childhood (ISAAC) questionnaire) [7] and 50 children without wheezing episodes were included at 2–4 years of age. The children were randomly selected from a random population sample in Limburg, the Netherlands, based on the presence or absence of recurrent wheeze [6]. During the initial visit, saliva or buccal cells (DNA), nasal and throat swabs (bacterial cultures), and blood (Treg) were collected. Participants were genotyped for six single nucleotide polymorphisms in TLR2 , TLR4 , TLR9 and CD14 (Sequenom …
- Published
- 2014
26. Detection of the plasmid-mediated colistin-resistance gene mcr-1 in faecal metagenomes of Dutch travellers
- Author
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Christian J. H. von Wintersdorff, Lieke B. van Alphen, Erik Beuken, John Penders, Petra F. G. Wolffs, Paul H. M. Savelkoul, Astrid M. L. Oude Lashof, Julius M. van Niekerk, Ellen E. Stobberingh, Christian J. P. A. Hoebe, Interne Geneeskunde, MUMC+: DA MMI Toegelatenen (9), MUMC+: DA MMI Moleculaire dia (9), MUMC+: DA MMI Management (9), RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, Med Microbiol, Infect Dis & Infect Prev, MUMC+: DA MMI AIOS (9), MUMC+: DA MMI Staf (9), RS: CAPHRI - R4 - Health Inequities and Societal Participation, MUMC+: DA Medische Microbiologie en Infectieziekten (5), RS: NUTRIM - R2 - Gut-liver homeostasis, Medical Microbiology and Infection Prevention, and AII - Infectious diseases
- Subjects
0301 basic medicine ,Microbiology (medical) ,Adult ,Male ,030106 microbiology ,Population ,Biology ,Real-Time Polymerase Chain Reaction ,Africa, Southern ,law.invention ,03 medical and health sciences ,Feces ,Young Adult ,law ,Drug Resistance, Bacterial ,TaqMan ,medicine ,Humans ,Pharmacology (medical) ,Microbiome ,education ,Polymerase chain reaction ,Asia, Southeastern ,Aged ,Netherlands ,Pharmacology ,education.field_of_study ,Travel ,Colistin ,Sequence Analysis, DNA ,Middle Aged ,Virology ,Anti-Bacterial Agents ,Gastrointestinal Microbiome ,030104 developmental biology ,Infectious Diseases ,Carriage ,Metagenomics ,Genes, Bacterial ,MCR-1 ,Female ,hormones, hormone substitutes, and hormone antagonists ,medicine.drug - Abstract
Background: Recently, the first plasmid-mediated colistin-resistance gene, mcr-1, was reported. Colistin is increasingly used as an antibiotic of last resort for the treatment of infections caused by carbapenem-resistant bacteria, which have been rapidly disseminating worldwide in recent years. Objectives: The reported carriage rate of mcr-1 in humans remains sporadic thus far, except for those reported in Chinese populations. We aimed to determine its presence in the faecal metagenomes of healthy Dutch travellers between 2010 and 2012. Methods: Faecal metagenomic DNA of pre-and post-travel samples from 122 healthy Dutch long-distance travellers was screened for the presence of mcr-1 using a TaqMan quantitative PCR assay, which was designed in this study. All positive samples were confirmed by sequencing of the amplicons. Results: The mcr-1 gene was detected in 6 (4.9%, 95% CI = 2.1%-10.5%) of 122 healthy Dutch long-distance travellers after they had visited destinations in South(-east) Asia or southern Africa between 2011 and 2012. One of these participants was already found to be positive before travel. Conclusions: Our study highlights the potential of PCR-based targeted metagenomics as an unbiased and sensitive method to screen for the carriage of the mcr-1 gene and suggests that mcr-1 is widespread in various parts of the world. The observation that one participant was found to be positive before travel suggests that mcr-1 may already have disseminated to the microbiomes of Dutch residents at a low prevalence, warranting a more extensive investigation of its prevalence in the general population and possible sources.
- Published
- 2016
27. Cross-sectional study on surveillance of surgical site infections after vascular surgery
- Author
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Jan H.M. Tordoir, Cathrien A. Bruggeman, John Penders, Frank H. van Tiel, E. Smeets, Cor G. M. I. Baeten, Margriet M.J. Rouflart, Amita Ramcharan, Ellen E. Stobberingh, Stephanie O. Breukink, Medische Microbiologie, Surgery, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: NUTRIM - R2 - Gut-liver homeostasis, RS: CAPHRI School for Public Health and Primary Care, Epidemiologie, and RS: CARIM School for Cardiovascular Diseases
- Subjects
Male ,Cross-sectional study ,Logistic regression ,vascular surgery ,PROPHYLAXIS ,Risk Factors ,Epidemiology ,Infection control ,EPIDEMIOLOGY ,Netherlands ,bundle of care ,Aged, 80 and over ,Cross Infection ,Incidence ,Incidence (epidemiology) ,surgical site infections ,Middle Aged ,infection control ,Cardiothoracic surgery ,Epidemiological Monitoring ,Pseudomonas aeruginosa ,Female ,Gentamicin ,medicine.drug ,Adult ,Microbiology (medical) ,Staphylococcus aureus ,medicine.medical_specialty ,IMPROVEMENT ,Microbiology ,Young Adult ,Internal medicine ,POSTDISCHARGE SURVEILLANCE ,CARDIOTHORACIC SURGERY ,medicine ,Humans ,Surgical Wound Infection ,Vascular Diseases ,antimicrobial resistance ,Aged ,WOUND INFECTIONS ,business.industry ,Vascular surgery ,CARE ,PREVENTION ,Surgery ,Cross-Sectional Studies ,RISK-FACTORS ,business ,GRAFT INFECTIONS - Abstract
Aims: To determine the incidence and risk factors for surgical site infections (SSI) after vascular surgery, to evaluate the Dutch safety bundle to reduce adverse complications and to analyze causative microorganisms of SSIs. Materials & methods: The 3.5-year study was divided into two periods: the control period (before bundle implementation) and intervention period (after implementation). Postdischarge surveillance was performed until 30 days after surgery. Causative microorganisms from in-hospital wound swabs were determined. SSI rates between both periods were compared and a risk analysis was carried out by performing a logistic regression. Results: The study included 1719 operations. The in-hospital SSI rate increased significantly over time. Out of 140 SSIs, 39% were diagnosed postdischarge. Risk factors were diabetes, age >60 years and operations classified as contaminated or dirty. Pseudomonas aeruginosa susceptibility was the highest for gentamicin (97%). All Staphylococcus aureus were methicillin susceptible. Conclusion: As patient demographics are important to determine the effectiveness of infection preventive measures, (postdischarge) surveillance is important for developing SSI interventions.
- Published
- 2013
28. Prevalence of chronic wounds and structural quality indicators of chronic wound care in Dutch nursing homes
- Author
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A.A.L.M. Rondas, Ellen E. Stobberingh, Jos M. G. A. Schols, and Ruud J.G. Halfens
- Subjects
Chronic wound ,medicine.medical_specialty ,education.field_of_study ,integumentary system ,business.industry ,media_common.quotation_subject ,Population ,Signs and symptoms ,Dermatology ,Institutional level ,Nursing home population ,medicine ,Surgery ,Chronic wound care ,Quality (business) ,medicine.symptom ,Intensive care medicine ,Nursing homes ,business ,education ,media_common - Abstract
The aim of this study was to measure the prevalence of (infected) chronic wounds in Dutch nursing homes and to explore which signs and symptoms are used to diagnose infected chronic wounds. Moreover, it was to determine which structural quality indicators related to chronic wound care at ward and institutional levels were fulfilled. In April 2012, as part of the annual National Prevalence Measurement of Care Problems of Maastricht University [Landelijke Prevalentiemeting Zorgproblemen (LPZ)], a multi-center cross-sectional point-prevalence measurement was carried out together with an assessment of relevant care quality indicators. The prevalence was 4·2%; 16 of 72 (22%) chronic wounds were considered to be infected. Increase of exudate (81·3%; n = 13), erythema (68·8%; n = 11), pain (56·3%; n = 9) and wound recalcitrance (56·3%; n = 9) were considered to be diagnostic signs and symptoms of a chronic wound infection. Although at institutional level most quality indicators were fulfilled, at ward level this was not the case. Despite the relatively low number of residents, we consider our population as representative for the nursing home population. It may be an advantage to appoint specific ward nurses and to provide them specifically with knowledge and skills concerning chronic wounds.
- Published
- 2013
29. Antimicrobial resistance among respiratory Haemophilus influenzae isolates from pulmonology services over a six-year period
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Tanja H, Geelen, Frank R, Stassen, Jacomina A A, Hoogkamp-Korstanje, Cathrien A, Bruggeman, Ellen E, Stobberingh, H, van Dessel, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: CAPHRI School for Public Health and Primary Care
- Subjects
Adult ,Male ,Microbiology (medical) ,medicine.medical_specialty ,Antibiotic surveillance study ,Haemophilus Infections ,antibiotic resistance ,medicine.drug_class ,Antibiotics ,Drug resistance ,respiratory tract infections ,medicine.disease_cause ,TRACT INFECTIONS ,Haemophilus influenzae ,Microbiology ,Antibiotic resistance ,Internal medicine ,Drug Resistance, Bacterial ,Prevalence ,Pulmonary Medicine ,medicine ,Humans ,Respiratory system ,Netherlands ,SURVEILLANCE PROGRAM ,PATHOGENS ,General Immunology and Microbiology ,Respiratory tract infections ,business.industry ,Incidence ,Incidence (epidemiology) ,Haemophilus influenzae isolates ,ANTIBIOTIC-RESISTANCE ,General Medicine ,ADULTS ,Hospitals ,EXACERBATIONS ,Infectious Diseases ,Pulmonology ,SUSCEPTIBILITIES ,Female ,business - Abstract
BACKGROUND: Respiratory tract infections (RTI) are frequently caused by Haemophilus influenzae. Widespread antibacterial resistance among respiratory microorganisms complicates empirical RTI treatment. Therefore, national data on antibiotic resistance for H. influenzae are important for guiding optimal antibiotic choice. METHODS: The antibiotic susceptibility of H. influenzae strains isolated from respiratory specimens of patients admitted to the pulmonology services between 2005 and 2010 was assessed. Isolates were collected annually from 13 hospitals in the Netherlands as part of the national intramural antimicrobial resistance surveillance performed by the Dutch Working Group on Antibiotic Policy (SWAB). Breakpoints for resistance were in accordance with the criteria of the European Committee on Antimicrobial Susceptibility Testing (EUCAST). Trend analysis was performed using logistic regression analysis. RESULTS: In total, 1606 H. influenzae strains were analyzed. The prevalence of antibiotic resistance to amoxicillin, co-amoxiclav, doxycycline, co-trimoxazole, and clarithromycin was stable over the 6-y period, and there was a trend towards a decrease in the prevalence of beta-lactamase-producing isolates. Regarding prevalences, no significant trends were observed. CONCLUSIONS: Our study showed no significant changes in antibiotic resistance for H. influenzae isolated at different hospitals in the Netherlands over a 6-y period. Regular surveillance remains important in controlling the prevalence of resistance, since actual resistance data should be taken into account when the choice of an empiric antibiotic is made.
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- 2013
30. Thirteen years of antibiotic susceptibility surveillance of Pseudomonas aeruginosa from intensive care units and urology services in the Netherlands
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Bayoue Li, J. A A Hoogkamp-Korstanje, P. Croughs, Ellen E. Stobberingh, Medical Microbiology & Infectious Diseases, Epidemiology, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: CAPHRI School for Public Health and Primary Care
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Microbiology (medical) ,medicine.medical_specialty ,Imipenem ,Cefepime ,Urology ,Ceftazidime ,Microbial Sensitivity Tests ,Meropenem ,Urology Department, Hospital ,law.invention ,law ,Intensive care ,Drug Resistance, Bacterial ,Medicine ,Humans ,Pseudomonas Infections ,Netherlands ,Cross Infection ,business.industry ,General Medicine ,Intensive care unit ,Hospitals ,Anti-Bacterial Agents ,Intensive Care Units ,Infectious Diseases ,Pseudomonas aeruginosa ,business ,Empiric therapy ,Piperacillin ,medicine.drug - Abstract
The purpose of this study was the evaluation of trends in the antimicrobial resistance of Pseudomonas aeruginosa from intensive care unit (ICU) patients and urology patients in the Netherlands. From 1998 to 2010, 1,927 consecutive P. aeruginosa isolates from ICU (n = 1,393) and urology service patients (n = 534) of 14 university and referral hospitals all over the Netherlands were collected and their susceptibility to relevant antibiotics was determined according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST) guidelines. Over time, a significant upward trend in the resistance of P. aeruginosa strains collected from ICUs to piperacillin (1.2 % to 10.6 %, p = 0.0175), piperacillin-tazobactam (1.2 % to 12.1 %, p = 0.0008), ceftazidime (1.2 % to 7.8 %, p = 0.0064), cefepime (4.8 % to 6.4 %, p = 0.0166), imipenem (6 % to 19.1 %, p
- Published
- 2013
31. Adequacy of an evidence-based treatment guideline for complicated urinary tract infections in the Netherlands and the effectiveness of guideline adherence
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Suzanne E. Geerlings, Jan M. Prins, Ellen E. Stobberingh, Marlies E J L Hulscher, V. Spoorenberg, Med Microbiol, Infect Dis & Infect Prev, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: CAPHRI School for Public Health and Primary Care, Other departments, Amsterdam institute for Infection and Immunity, Infectious diseases, and Amsterdam Public Health
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Microbiology (medical) ,Adult ,Male ,medicine.medical_specialty ,Evidence-based practice ,Adolescent ,Urinary system ,Microbial Sensitivity Tests ,Young Adult ,Drug Resistance, Bacterial ,Medicine ,Humans ,Young adult ,Intensive care medicine ,Aged ,Netherlands ,Retrospective Studies ,Aged, 80 and over ,Evidence-Based Medicine ,Bacteria ,business.industry ,Retrospective cohort study ,General Medicine ,Evidence-based medicine ,Guideline ,Middle Aged ,Anti-Bacterial Agents ,Catheter ,Infectious Diseases ,Effective primary care and public health Pathogenesis and modulation of inflammation [NCEBP 7] ,Practice Guidelines as Topic ,Urinary Tract Infections ,Observational study ,Female ,Guideline Adherence ,business ,Quality of hospital and integrated care [NCEBP 4] - Abstract
Item does not contain fulltext Guideline recommendations on empirical antibiotic treatment are based on the literature, expert opinion, expected pathogens and resistance data, but their adequacy in the real-life setting is often unknown. We investigated the adequacy of the Dutch evidence-based guideline-recommended treatment options for patients with complicated urinary tract infections (UTIs) 2 years after guideline publication and, additionally, the adequacy of actually prescribed empirical therapy for patients treated with guideline-adherent versus non-guideline-adherent therapy. A retrospective, observational multicentre study in the Netherlands included 810 patients with a complicated UTI without special conditions and 174 with a urinary catheter. The susceptibility patterns of cultured uropathogens were compared with guideline-recommended treatment options, which included specific recommendations for patients with a catheter, and with actually prescribed empirical therapy. We considered inadequate coverage rates below 10 % as acceptable. Of the recommended regimens for patients with a UTI without other conditions, only the guideline-recommended combination of amoxicillin-gentamicin was acceptable (inadequate coverage rate 6 %). For patients with a catheter, inadequate coverage rates of recommended regimens ranged from 3 to 24 %. In patients with a UTI without other conditions, actually prescribed guideline-adherent therapy resulted in less broad-spectrum but not in less adequate therapy; in patients with a catheter, actually prescribed guideline-adherent therapy resulted in a higher coverage rate than those prescribed non-guideline-adherent therapy. Due to the continuously changing resistance rates and differences between the epidemiologies of uropathogens assumed in the guideline and those in real life, regular real-life assessments of recommended treatment options are necessary. Guideline adherence seems to be effective for increasing coverage rates without prescribing unnecessarily broad regimens.
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- 2013
32. Carriage of antimicrobial-resistant commensal bacteria in Dutch long-term-care facilities
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Sabine de Greeff, Ellen E. Stobberingh, L Verhoef, Stephanie Natsch, Monique Roukens, and Nico Meessen
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Male ,0301 basic medicine ,Microbiology (medical) ,Staphylococcus aureus ,medicine.medical_specialty ,030106 microbiology ,Microbial Sensitivity Tests ,Urine ,medicine.disease_cause ,Microbiology ,Feces ,03 medical and health sciences ,Antibiotic resistance ,Internal medicine ,Drug Resistance, Bacterial ,Epidemiology ,Escherichia coli ,Prevalence ,medicine ,Humans ,Pharmacology (medical) ,Netherlands ,Pharmacology ,business.industry ,Bacterial Infections ,Antimicrobial ,Long-Term Care ,Methicillin-resistant Staphylococcus aureus ,Long-term care ,Infectious Diseases ,Carriage ,lnfectious Diseases and Global Health Radboud Institute for Health Sciences [Radboudumc 4] ,Nitrofurantoin ,Carrier State ,Female ,Health Facilities ,Nasal Cavity ,business ,medicine.drug - Abstract
Item does not contain fulltext OBJECTIVES: The objective of this study was to assess carriage of antimicrobial-resistant commensal microorganisms, i.e. Escherichia coli and Staphylococcus aureus, and its predictors in long-term-care facilities (LTCFs). METHODS: Nasal swabs and/or urine or incontinence samples were collected from participating residents in 111 LTCFs and tested for the presence of S. aureus and/or E. coli, respectively. Antimicrobial resistance to eight antimicrobials was linked to antimicrobial usage in the year preceding sampling and to LTCF characteristics. Using multilevel logistic regression, predictors of carriage of ESBL-producing E. coli in LTCFs were identified. RESULTS: S. aureus was identified in 1269/4763 (26.6%) nasal swabs, including 13/4763 (0.3%) MRSA carriers in 9/107 (8%) LTCFs. Of the 5359 urine/incontinence samples, 2934 (55%) yielded E. coli, including 123 (4.2%) producing ESBL, which were found in 53/107 locations (range 1%-33%). For all but one antimicrobial (i.e. nitrofurantoin) >20% of isolated E. coli were resistant. Multilevel multivariable logistic regression identified two predictors of carriage of ESBL-producing E. coli: (i) antimicrobial usage (OR 1.8, 95% CI 1.1-3.0 for each extra 50 DDD/1000 residents/day); and (ii) presence of MRSA carriers in the LTCFs (OR 2.4, 95% CI 1.0-5.6). CONCLUSIONS: The low proportion of 4.2% ESBL-producing E. coli and the low prevalence of 0.3% MRSA carriage found in LTCF residents suggest that Dutch LTCFs are not yet an important reservoir of MDR potential pathogens. Nevertheless, the large variation between LTCFs warrants close monitoring of antimicrobial resistance in LTCFs. Integrated surveillance, i.e. linking data sources on antimicrobial usage, microbiological testing, clinical background data and epidemiological data, is needed.
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- 2016
33. Antimicrobial resistance and molecular typing of Staphylococcus aureus bloodstream isolates from hospitals in Peru
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Cathrien A. Bruggeman, Coralith Garcia, Frine Samalvides, Michelle I.A. Rijnders, Ellen E. Stobberingh, Jan Jacobs, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: CAPHRI School for Public Health and Primary Care
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Genes Bacterial ,Meca Gene ,Infant Newborn ,America, Latin ,Bacterium Detection ,Bacteremia ,Drug resistance ,Antimicrobial resistance ,medicine.disease_cause ,Disk Diffusion ,EMERGENCE ,Methicillin ,Ciprofloxacin ,Peru ,Molecular characteristics ,Staphylococcus Aureus ,Child ,Gentamicin ,Sccmec I Gene ,Clindamycin ,Bacterium Isolate ,LATIN-AMERICA ,Peru|Latin America ,Methicillin Resistant Staphylococcus Aureus ,Staphylococcal Infections ,Hospitals ,Anti-Bacterial Agents ,Erythromycin ,Blood ,Sccmec IV Gene ,Infectious Diseases ,Bacterial Gene ,Blood Analysis ,Staphylococcus aureus ,SPREAD ,COLOMBIAN HOSPITALS ,medicine.drug ,Adult ,Microbiology (medical) ,CORDOBA ,Bacterial diseases ,Microbial Sensitivity Tests ,purl.org/pe-repo/ocde/ford#3.03.08 [https] ,Biology ,Isolation ,Microbiology ,Antibiotic resistance ,EPIDEMIC ,Drug Resistance, Bacterial ,SURVEILLANCE ,medicine ,Humans ,Drug Resistance Bacterial ,Gene Identification ,Typing ,Staphylococcal Protein A ,Rifampicin ,IDENTIFICATION ,Molecular Characteristics ,Infant, Newborn ,Molecular cloning ,Molecular ,biochemical phenomena, metabolism, and nutrition ,Newborn ,bacterial infections and mycoses ,EVOLUTION ,Molecular Typing ,Hospital infections ,Latin America ,Chloramphenicol ,Genes, Bacterial ,Blood Culture ,Antibiotic Resistance ,Bacterial Transmission ,Multilocus sequence typing ,CLONES - Abstract
Objectives: Methicillin-resistant Staphylococcus aureus (MRSA) infections are of worldwide concern. The present study describes the antimicrobial resistance and molecular typing of methicillin-resistant and methicillin-susceptible S. aureus (MSSA) bloodstream isolates in Peru.Methods: Consecutive non-duplicate S. aureus bloodstream isolates were collected over a 15month period (2008-2009) from seven hospitals in Lima and Callao, two contiguous cities in Peru. Detection of mecA gene, spa typing and Staphylococcal Chromosomal Cassette (SCC) mec typing were performed. Antimicrobial resistance was assessed by disk diffusion.Results: Of 338 isolates, MRSA rate was 50.0%. Among MRSA isolates (n = 169), 81.7% were associated to MLST CC5, 68.8% had spa t149/SCCmec I, and more than 85% were co-resistant to ciprofloxacin, clindamycin, erythromycin and gentamicin; 8.9% (n = 15) were associated to MLST CC8, 14 of them had spa t148/SCCmec IV, and more than 70% were co-resistant to ciprofloxacin, clindamycin and erythromycin. Among MSSA isolates (n = 169), there was a higher diversity of spa types (n = 56) compared to MRSA isolates (n = 17), 27.2% were associated to MLST CC8, 23.7% were resistant to erythromycin and clindamycin resistance exceeded 20%.Conclusions: MRSA rate among bloodstream isolates in Peru was 50%, with MLST CC5/t149/SCCmec I representing the most frequent clone. (c) 2012 The British Infection Association. Published by Elsevier Ltd. All rights reserved.
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- 2012
34. Diagnostic approach to urinary tract infections in male general practice patients: a national surveillance study
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Ellen E. Stobberingh, Martien C. J. M. van Dongen, Gé Donker, Casper D. J. den Heijer, Epidemiologie, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: CAPHRI School for Public Health and Primary Care
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Male ,Pediatrics ,General Practice ,urologic and male genital diseases ,Recurrence ,Surveys and Questionnaires ,SPECIFICITY ,Netherlands ,Reagent Strips ,Aged, 80 and over ,Incidence (epidemiology) ,Incidence ,WOMEN ,MEN ,Middle Aged ,Anti-Bacterial Agents ,Predictive value of tests ,Population Surveillance ,Urinary Tract Infections ,TESTS ,medicine.symptom ,SENSITIVITY ,Family Practice ,Algorithms ,CLINICAL SCORES ,Adult ,medicine.medical_specialty ,Adolescent ,Fever ,DIPSTICKS ,Flank Pain ,Sensitivity and Specificity ,Predictive Value of Tests ,Internal medicine ,Dysuria ,medicine ,MANAGEMENT ,Humans ,Medical prescription ,ACUTE CYSTITIS ,Nitrites ,Aged ,business.industry ,Research ,Dipstick ,Confidence interval ,Nitrite test ,Leukocyte esterase ,ROC Curve ,business ,Carboxylic Ester Hydrolases ,Sentinel Surveillance - Abstract
Background:Diagnostic urinary tract infection (UTI) studies have primarily been performed among female patients.Aim:To create a diagnostic algorithm for male general practice patients suspected of UTI.Design and setting:Surveillance study in the Dutch Sentinel General Practice Network.Method:Clinical information and dipstick results were collected from 603 patients. Algorithm-predicted care was compared with care as usual in terms of sensitivity (antibiotic recommended when UTI was confirmed) and specificity (no antibiotic recommended when no UTI was observed).Results:Complete information was available from 490/603 (81 %) males, of whom 66 % (321/490) had a UTI. A diagnostic algorithm recommending antimicrobial prescription in the case of a positive nitrite test or a positive leukocyte esterase test in males aged >= 60 years, had a positive predictive value (PPV) of 83 % (95 % confidence interval [CI] = 78 to 87) and a negative predictive value (NPV) of 60 % (95 % CI = 52 to 66), respectively (area under the ROC curve: 0.78, 95 % CI = 0.74 to 0.82). When both dipstick results were positive in males aged >= 60 years, PPV increased to 90 % (95 % CI = 83 to 94), whereas NPV was highest in males >= 60 years with negative dipstick results (71 %, 95 % CI = 59 to 81). Sensitivity and specificity of predicted UTI care and usual care did not differ (75 % versus 79 %, P = 0.30, and 70 % versus 63 %, P = 0.17, respectively).Conclusion:UTI care provided to Dutch male GP patients is as accurate as predicted care from a diagnostic algorithm. The studied clinical information and dipstick tests are useful for ruling in UTI in males, but have limited value in ruling out this diagnosis.
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- 2012
35. Antimicrobial and Anti-Thrombogenic Features Combined in Hydrophilic Surface Coatings for Skin-Penetrating Catheters. Synergy of Co-embedded Silver Particles and Heparin
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Sander Croes, Leo H. Koole, Kris N.J. Stevens, Menno L.W. Knetsch, Ellen E. Stobberingh, MUMC+: DA KFT Medische Staf (9), Med Microbiol, Infect Dis & Infect Prev, MUMC+: MA AIOS Anesthesiologie (9), Biomedische Technologie, CTC, RS: CARIM School for Cardiovascular Diseases, and RS: CAPHRI School for Public Health and Primary Care
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Materials science ,sodium heparin ,Surface Properties ,medicine.drug_class ,medicine.disease_cause ,Antithrombins ,Bacterial Adhesion ,Catheters, Indwelling ,Anti-Infective Agents ,medicine ,Humans ,silver ,General Materials Science ,bacterial adherence ,Silver particles ,Heparin ,Critically ill ,Anticoagulant ,catheter ,Antimicrobial ,Biocompatible material ,Catheter ,Staphylococcus aureus ,antimicrobial coatings ,hydrophilicity ,Biomedical engineering ,medicine.drug - Abstract
Percutaneous (skin-penetrating) catheters such as central venous catheters (CVCs), are used ubiquitously in the treatment of critically ill patients, although it is known that the risks for serious complications, particularly bloodstream infection and thromboembolism, are high. Materials science and engineering offer important new perspectives regarding further improvement of CVCs. A promising approach is the use of synthetic biocompatible hydrogel coatings with both silver particles and heparin embedded therein. Such formulations combine the well-known broad-spectrum antimicrobial features of silver with the anticoagulant activity of immobilized heparin. Previous work revealed that heparin augments antimicrobial activity of silver, while maintaining its anticoagulant function. This study set out to investigate the synergy of heparin and silver in more detail. Exit-challenge tests, experiments on bacterial killing and adherence, as well as in vitro challenge tests with three Staphylococcus aureus strains (one reference strain, and two clinical isolates) consistently showed the synergistic effect. In addition, the impact of changing the coating's hydrophilicity, and changing the silver concentration in the coatings, were examined. The experimental results, taken together and combined with data from the literature, point out that synergy of heparin and silver is best explained by binding of Ag(+) ions to heparin within the swollen coating, followed by release of heparin-Ag(+) complexes upon immersion of the coatings in an aqueous environment such as blood. Possible implications of this work regarding the development of improved/safer CVCs are briefly discussed.
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- 2011
36. Recidiverende urineweginfecties bij oudere mannen en vrouwen
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C.D.J. den Heijer and Ellen E. Stobberingh
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Gynecology ,medicine.medical_specialty ,business.industry ,medicine ,General Medicine ,business - Abstract
De verschillende aspecten van recidiverende urineweginfecties bij oudere mannen en vrouwen worden besproken, te weten epidemiologie, pathogenese, symptomatologie, therapie en profylaxe. Waar relevant wordt een vergelijking gemaakt met recidiverende urineweginfecties bij de jongere patient.
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- 2011
37. A 12 year (1998-2009) antibiotic resistance surveillance of Klebsiella pneumoniae collected from intensive care and urology patients in 14 Dutch hospitals
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L. J. M. Sabbe, P. S. Beisser, J. A. A. Hoogkamp-Korstanje, W. H. M. Vogels, P. J. G. M. Rietra, Thera A. M. Trienekens, P. Bloembergen, Cathrien A. Bruggeman, B. M. Dejongh, M G R Hendrix, H. A. Bijlmer, Ellen E. Stobberingh, H. van Dessel, Karola Waar, Anton Buiting, A. J. Beunders, W. D. H. Hendriks, Patrick D. J. Sturm, C. F. M. van der Donk, Medische Microbiologie, and RS: CAPHRI School for Public Health and Primary Care
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Microbiology (medical) ,medicine.medical_specialty ,Critical Illness ,Urology ,Ceftazidime ,Microbial Sensitivity Tests ,Antibiotic resistance ,Enterobacteriaceae ,Intensive care ,Drug Resistance, Bacterial ,Humans ,Medicine ,Pharmacology (medical) ,fluoroquinolones ,Netherlands ,Antibacterial agent ,Pharmacology ,business.industry ,beta-lactam antibiotics ,Sulfamethoxazole ,Pathogenesis and modulation of inflammation Infection and autoimmunity [N4i 1] ,Trimethoprim ,Hospitals ,Anti-Bacterial Agents ,Klebsiella Infections ,Ciprofloxacin ,Intensive Care Units ,Klebsiella pneumoniae ,Infectious Diseases ,ESBLs ,Urinary Tract Infections ,business ,Cefuroxime ,medicine.drug - Abstract
Item does not contain fulltext OBJECTIVES: We evaluated the changes in antibiotic resistance from 1998 to 2009 of Klebsiella pneumoniae isolated from the intensive care units (ICUs) and urology services of 14 Dutch hospitals and the consequences for empirical therapy. METHODS: Quantitative antibiotic susceptibility testing of K. pneumoniae was performed in a central laboratory using a microbroth dilution method. Breakpoints were as defined by the European Committee on Antimicrobial Susceptibility Testing (EUCAST). The prevalence of extended-spectrum beta-lactamase (ESBL)- and carbapenemase-producing isolates was determined. RESULTS: A significant increase in resistance among ICU isolates was observed for ceftazidime (4.2%-10.8%), ciprofloxacin (5.8%-18.5%) and trimethoprim/sulfamethoxazole (11.9%-23.1%), and for cefuroxime (2.8%-7.9%) and trimethoprim/sulfamethoxazole (13.5%-27.8%) among urology isolates. Among ICU isolates the prevalence of ESBLs increased significantly from 2% to 8%. Carbapenemase production was not demonstrated. Among ICU isolates the prevalence of multidrug resistance increased and has been >/=12% since 2004. Among urology isolates multidrug resistance was highest in 2009 at 7.4%. Overall, resistance was significantly higher among ICU isolates. CONCLUSIONS: We observed an increase in resistance among ICU and urology isolates and an increased prevalence of ESBLs among ICU isolates. Carbapenemase production was not demonstrated. A regular update of empirical treatment protocols based on actual surveillance data is justified. 01 april 2011
- Published
- 2011
38. Cranberries vs Antibiotics to Prevent Urinary Tract Infections A Randomized Double-blind Noninferiority Trial in Premenopausal Women
- Author
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Corianne A. J. M. de Borgie, Willem M. van der Wal, Annelies Verbon, Jan M. Prins, Jeanne Koeijers, Suzanne E. Geerlings, Mariëlle A. J. Beerepoot, Gerben ter Riet, Ellen E. Stobberingh, Sita Nys, Theo M. de Reijke, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: CAPHRI School for Public Health and Primary Care, Med Microbiol, Infect Dis & Infect Prev, Internal Medicine, Infectious diseases, APH - Amsterdam Public Health, General practice, Other departments, CCA -Cancer Center Amsterdam, Urology, and AII - Amsterdam institute for Infection and Immunity
- Subjects
Antibiotics ,Drug resistance ,urologic and male genital diseases ,law.invention ,Randomized controlled trial ,Ciprofloxacin ,law ,Secondary Prevention ,Escherichia coli Infections ,Antibacterial agent ,RISK ,Middle Aged ,female genital diseases and pregnancy complications ,Anti-Bacterial Agents ,Treatment Outcome ,Vaccinium macrocarpon ,ESCHERICHIA-COLI ,Urinary Tract Infections ,Female ,TRIMETHOPRIM ,medicine.drug ,Adult ,medicine.medical_specialty ,medicine.drug_class ,Anti-Infective Agents, Urinary ,Capsules ,Drug Administration Schedule ,Antibiotic resistance ,Double-Blind Method ,Internal medicine ,Drug Resistance, Bacterial ,Trimethoprim, Sulfamethoxazole Drug Combination ,Escherichia coli ,Internal Medicine ,medicine ,Humans ,PATHOGENS ,business.industry ,Amoxicillin ,bacterial infections and mycoses ,Trimethoprim ,Surgery ,Premenopause ,Plant Preparations ,business ,human activities ,RESISTANCE ,JUICE - Abstract
BACKGROUND: The increasing prevalence of uropathogens resistant to antimicrobial agents has stimulated interest in cranberries to prevent recurrent urinary tract infections (UTIs). METHODS: In a double-blind, double-dummy noninferiority trial, 221 premenopausal women with recurrent UTIs were randomized to 12-month prophylaxis use of trimethoprim-sulfamethoxazole (TMP-SMX), 480 mg once daily, or cranberry capsules, 500 mg twice daily. Primary end points were the mean number of symptomatic UTIs over 12 months, the proportion of patients with at least 1 symptomatic UTI, the median time to first UTI, and development of antibiotic resistance in indigenous Escherichia coli. RESULTS: After 12 months, the mean number of patients with at least 1 symptomatic UTI was higher in the cranberry than in the TMP-SMX group (4.0 vs 1.8; P = .02), and the proportion of patients with at least 1 symptomatic UTI was higher in the cranberry than in the TMP-SMX group (78.2% vs 71.1%). Median time to the first symptomatic UTI was 4 months for the cranberry and 8 months for the TMP-SMX group. After 1 month, in the cranberry group, 23.7% of fecal and 28.1% of asymptomatic bacteriuria E coli isolates were TMP-SMX resistant, whereas in the TMP-SMX group, 86.3% of fecal and 90.5% of asymptomatic bacteriuria E coli isolates were TMP-SMX resistant. Similarly, we found increased resistance rates for trimethoprim, amoxicillin, and ciprofloxacin in these E coli isolates after 1 month in the TMP-SMX group. After discontinuation of TMP-SMX, resistance reached baseline levels after 3 months. Antibiotic resistance did not increase in the cranberry group. Cranberries and TMP-SMX were equally well tolerated. CONCLUSION: In premenopausal women, TMP-SMX, 480 mg once daily, is more effective than cranberry capsules, 500 mg twice daily, to prevent recurrent UTIs, at the expense of emerging antibiotic resistance. TRIAL REGISTRATION: isrctn.org Identifier: ISRCTN50717094.
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- 2011
39. Probiotics versus antibiotic decontamination of the digestive tract: infection and mortality
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Annelies Verbon, Jan-Harm Zwaveling, Alfons G. H. Kessels, Guy J. Oudhuis, Tom P J Dormans, Dennis C J J Bergmans, Ellen E. Stobberingh, Martin H. Prins, Internal Medicine, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: CAPHRI School for Public Health and Primary Care, Epidemiologie, MUMC+: KIO Kemta (9), Med Microbiol, Infect Dis & Infect Prev, and Intensive Care
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Male ,ACUTE-PANCREATITIS ,Survival ,Antibiotics ,Critical Care and Intensive Care Medicine ,DOUBLE-BLIND ,Lactobacillus ,Infection control ,Decontamination ,Aged, 80 and over ,Cross Infection ,SELECTIVE DECONTAMINATION ,NOSOCOMIAL INFECTIONS ,biology ,Human decontamination ,Middle Aged ,RANDOMIZED CONTROLLED-TRIAL ,Anti-Bacterial Agents ,Intensive Care Units ,Female ,CRITICALLY-ILL PATIENTS ,Adult ,musculoskeletal diseases ,medicine.medical_specialty ,Adolescent ,medicine.drug_class ,ENTERAL NUTRITION ,INTENSIVE-CARE ,GUT BARRIER FUNCTION ,Young Adult ,Intensive care ,Internal medicine ,Anesthesiology ,Preoperative Care ,medicine ,Humans ,Intensive care medicine ,Aged ,Retrospective Studies ,business.industry ,Probiotics ,biology.organism_classification ,Gastrointestinal Tract ,Critical care ,Parenteral nutrition ,TRAUMA PATIENTS ,business ,Lactobacillus plantarum - Abstract
Selective decontamination of the digestive tract (SDD) has been shown to decrease the infection rate and mortality in intensive care units (ICUs); Lactobacillus plantarum 299/299v plus fibre (LAB) has been used for infection prevention and does not harbour the potential disadvantages of antibiotics. The objective was to assess whether LAB is not inferior to SDD in infection prevention.Two hundred fifty-four consecutive ICU patients with expected mechanical ventilation a parts per thousand yen48 h and/or expected ICU stay a parts per thousand yen72 h were assigned to receive SDD: four times daily an oral paste (polymyxin E, gentamicin, amphotericin B), enteral solution (same antibiotics), intravenous cefotaxime (first 4 days) or LAB: two times daily L. plantarum 299/299v with rose-hip.The primary endpoint was infection rate. A difference The trial could not demonstrate the non-inferiority of LAB compared with SDD in infection prevention. Results suggest no increased ICU mortality risk in the LAB group.
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- 2010
40. Antibiotic susceptibility of unselected uropathogenic Escherichia coli from female Dutch general practice patients: a comparison of two surveys with a 5 year interval
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C.D.J. den Heijer, J. Maes, Gé Donker, Ellen E. Stobberingh, Promovendi PHPC, Medische Microbiologie, and RS: CAPHRI School for Public Health and Primary Care
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Adult ,Microbiology (medical) ,medicine.medical_specialty ,Time Factors ,Adolescent ,medicine.drug_class ,General Practice ,Antibiotics ,Microbial Sensitivity Tests ,Fosfomycin ,Drug Prescriptions ,Microbiology ,antibiotic use ,Young Adult ,Antibiotic resistance ,Internal medicine ,Clavulanic acid ,medicine ,Humans ,Uropathogenic Escherichia coli ,Pharmacology (medical) ,antimicrobial resistance ,Child ,cystitis ,Escherichia coli Infections ,Aged ,Netherlands ,Antibacterial agent ,Aged, 80 and over ,Pharmacology ,business.industry ,Middle Aged ,Antimicrobial ,Trimethoprim ,Drug Utilization ,Anti-Bacterial Agents ,community-acquired ,Infectious Diseases ,ESBLs ,Nitrofurantoin ,Urinary Tract Infections ,Female ,Guideline Adherence ,business ,medicine.drug - Abstract
Background: To optimize empirical treatment of urinary tract infections (UTIs), regular evaluation of the antibiotic susceptibility of the most common uropathogen, Escherichia coli, is necessary. We compared the antibiotic prescription rate for UTIs in women and E. coli antibiotic susceptibility results, including the prevalence of extended-spectrum beta-lactamase (ESBL) producing strains, in 2009 with data collected 5 years ago. Methods: Urinary samples of female patients with symptoms of uncomplicated UTI in 42 general practices, all participating in the Sentinel Stations network of NIVEL, were collected during a 6-month period. Uropathogens were identified and the antibiotic susceptibility of E. coli was determined. Results: We analysed 970 urine cultures, of which 785 (81%) were considered positive (103 cfu/ml). Escherichia coli accounted for 72% of the isolates. ESBLs showed an increase between both surveys (0.1 versus 1%, P < 0.05), while no difference in antibiotic susceptibility of the commonly used antimicrobial agents for UTIs was observed. A significantly lower susceptibility rate to co-amoxiclav was observed in the eastern region compared with the northern part of the country (80 versus 92%, P < 0.05). Consistent with national guidelines, the prescription rate of trimethoprim decreased over time (19 versus 5%, P < 0.05) whereas nitrofurantoin and fosfomycin rates showed an increase (58 versus 66% and 0 versus 5% respectively, both P < 0.05). Conclusions: The antibiotic susceptibility of uropathogenic E. coli did not change over a 5-year period in female patients with uncomplicated UTI in The Netherlands, but ESBL-prevalence increased. With respect to the prescription of antimicrobial agents a good compliance to national UTI guidelines was observed.
- Published
- 2010
41. A variant of the Southern German clone of methicillin-resistant Staphylococcus aureus is predominant in Croatia
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Smilja Kalenić, Zrinka Bošnjak, Helena Ćetković, Ellen E. Stobberingh, Ruud H. Deurenberg, Ana Budimir, Medische Microbiologie, RS: CAPHRI School for Public Health and Primary Care, and Faculteit Medische Wetenschappen/UMCG
- Subjects
Microbiology (medical) ,DNA, Bacterial ,Methicillin-Resistant Staphylococcus aureus ,Meticillin ,Genotype ,Croatia ,Bacterial Toxins ,Drug Resistance ,Exotoxins ,SCCmec ,Microbial Sensitivity Tests ,MRSA ,Biology ,medicine.disease_cause ,Staphylococcal infections ,Polymerase Chain Reaction ,Microbiology ,Leukocidins ,Drug Resistance, Multiple, Bacterial ,medicine ,Prevalence ,Cluster Analysis ,Humans ,Typing ,Cities ,PVL ,spa typing ,Molecular Epidemiology ,Molecular epidemiology ,Bacterial ,DNA ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,Staphylococcal Infections ,medicine.disease ,bacterial infections and mycoses ,Virology ,Methicillin-resistant Staphylococcus aureus ,DNA Fingerprinting ,Hospitals ,Anti-Bacterial Agents ,Bacterial Typing Techniques ,Infectious Diseases ,Staphylococcus aureus ,Multilocus sequence typing ,Multiple ,medicine.drug - Abstract
The aim of the present study was to investigate the antibiotic susceptibility patterns and molecular epidemiology of clinical methicillin-resistant Staphylococcus aureus (MRSA) isolates recovered in 24 hospitals in 20 cities in Croatia from October to December 2004. A total of 1815 consecutive S. aureus isolates were recovered, 248 of which were MRSA. The MRSA isolates were analysed using spa typing, multilocus sequence typing and SCCmec typing. Furthermore, the presence of Panton-Valentine leukocidin (PVL) genes was determined as a genetic marker for community-associated MRSA. The MRSA prevalence was 14%. Ninety-six per cent of the MRSA isolates were resistant to ciprofloxacin, 95% to clindamycin and azithromycin, 94% to gentamicin, and 93% to erythromycin. The majority of the MRSA isolates (78%) was associated with the ST111-MRSA-I clone. In addition, various other endemic MRSA clones were observed, such as the ST247-MRSA-I (4%), the ST45-MRSA-IV (2%), the ST5-MRSA-I (2%), the ST239-MRSA-III (2%), the ST5-MRSA-II (1%), the ST8-MRSA-IV (1%) and the ST5-MRSA-IV (
- Published
- 2010
42. A rapid, 2-well, multiplex real-time polymerase chain reaction assay for the detection of SCCmec types I to V in methicillin-resistant Staphylococcus aureus
- Author
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Havard Valvatne, Ana Budimir, Patrick S. Beisser, Marie-Louise Boumans, Albert J. de Neeling, Ruud H. Deurenberg, Michelle I.A. Rijnders, Ellen E. Stobberingh, and Faculteit Medische Wetenschappen/UMCG
- Subjects
DNA, Bacterial ,Methicillin-Resistant Staphylococcus aureus ,Microbiology (medical) ,Genotype ,Biology ,medicine.disease_cause ,Staphylococcal infections ,Polymerase Chain Reaction ,Sensitivity and Specificity ,Microbiology ,law.invention ,multiplex ,real-time polymerase chain reaction ,assay ,detection ,SCCmec ,methicillin-resistant Staphylococcus aureus ,law ,Multiplex polymerase chain reaction ,medicine ,Animals ,Humans ,Multiplex ,Typing ,Polymerase chain reaction ,Swine Diseases ,Bacteriological Techniques ,Bacterial ,DNA ,General Medicine ,Staphylococcal Infections ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,medicine.disease ,Methicillin-resistant Staphylococcus aureus ,Virology ,Bacterial Typing Techniques ,Infectious Diseases ,Multilocus sequence typing - Abstract
For us to assess the spread of methicillin-resistant Staphylococcus aureus (MRSA), typing of the staphylococcal cassette chromosome mec (SCCmec) is a valuable addition to existing typing methods, such as multilocus sequence typing (MLST). Traditional SCCmec typing assays, that is, that of Oliveira et al. and Ito et al., are polymerase chain reaction (PCR) based, requiring electrophoresis. We introduce a rapid, 2-well, multiplex real-time PCR assay that can be used directly on bacterial suspensions and is able to characterize SCCmec type I to V based on the detection of the ccr genes and the mec complex. The assay was evaluated on 212 clinical MRSA isolates from various countries, associated with MLST clonal complexes (CC) 1, 5, 8, 22, 30, and 45, as well as pig-associated CC398. When comparing the real-time PCR assay with traditional methods, the correct SCCmec element was identified in 209 (99%) of the 212 MRSA isolates. The new assay enables high-throughput analyses for SCCmec on large strain collections.
- Published
- 2009
43. Definition of infection in chronic wounds by Dutch nursing home physicians
- Author
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Jos M. G. A. Schols, A.A.L.M. Rondas, Patricia Elaine Price, and Ellen E. Stobberingh
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Chronic wound ,medicine.medical_specialty ,Cross-sectional study ,MEDLINE ,Dermatology ,Severity of Illness Index ,Professional Competence ,Physicians ,Internal medicine ,Severity of illness ,Prevalence ,medicine ,Humans ,Intensive care medicine ,Abscess ,Netherlands ,Pressure Ulcer ,integumentary system ,business.industry ,Data Collection ,Original Articles ,Guideline ,medicine.disease ,Wound infection ,Nursing Homes ,Cross-Sectional Studies ,Wound Infection ,Surgery ,medicine.symptom ,Nursing homes ,business - Abstract
This study investigated the number and type of chronic wounds actually treated by Dutch nursing home physicians (NHPs). It was also the goal to know how many of the treated chronic wounds they considered infected. The NHPs were asked to choose and rank their top five out of several provided criteria for chronic wound infection. After this, the ranking was compared with the choices an international multidisciplinary Delphi group of wound experts made in 2005. A cross-sectional descriptive survey was conducted using the information from a self-reported questionnaire in a representative sample of Dutch NHPs. About 361 NHPs (25%) were sent a questionnaire. Of the 361 physicians, 139 (38.5%) filled in and returned the questionnaire of which 121 were valid. Of the NHPs, 73.5% actually treated at least one chronic pressure ulcers (PU), whereas 26.5% did not treat any. Of the responding NHPs,31.6 % treated at least one, but never more than two chronic post surgical wounds , whereas 68.4% of the NHPs treated none [corrected]. Chronic venous leg ulcers, arterial ulcers and diabetic ulcers scored infrequently and less than the other two sorts of chronic wounds. Of the Dutch NHPs, 53% considered that none of the PU infected. The other chronic wounds were judged far less frequently to be infected. Dutch NHPs appeared to use more 'traditional' criteria such as 'puss/abscess' and 'malodour' to identify infection and did not change their criteria by wound type. According to this study, NHPs do not frequently see many chronic wounds. The most frequent type of wounds treated was PU. For NHPs, the identification of infection of all types of chronic wounds is difficult. The use of criteria that is not in line with consensus documents may lead to ineffective treatment and even seriously damage patients: the clinical identification of infection is still dependent on experts' opinion. Further research on triggers for the suspicion of wound infection and the development of an evidence-based guideline is necessary.
- Published
- 2009
44. Genetic diversity of methicillin-resistant Staphylococcus aureus in a tertiary hospital in The Netherlands between 2002 and 2006
- Author
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Silvie Sebastian, Maaike A. Welling, E. Smeets, Ellen E. Stobberingh, F. H. Van Tiel, Ruud H. Deurenberg, H. van Dessel, E. Nulens, Patrick S. Beisser, Medische Microbiologie, and RS: NUTRIM - R3 - Chronic inflammatory disease and wasting
- Subjects
Microbiology (medical) ,DNA, Bacterial ,Methicillin-Resistant Staphylococcus aureus ,Meticillin ,Genotype ,Bacterial Toxins ,Exotoxins ,Drug resistance ,Biology ,Staphylococcal infections ,medicine.disease_cause ,Microbiology ,Leukocidins ,medicine ,Cluster Analysis ,Humans ,Netherlands ,Molecular Epidemiology ,Molecular epidemiology ,Bacterial ,Genetic Variation ,General Medicine ,DNA ,Staphylococcal Infections ,medicine.disease ,Methicillin-resistant Staphylococcus aureus ,Virology ,DNA Fingerprinting ,Hospitals ,Bacterial Typing Techniques ,Infectious Diseases ,Staphylococcus aureus ,Panton–Valentine leukocidin ,medicine.drug - Abstract
The aim of this study was to investigate the methicillin-resistant Staphylococcus aureus (MRSA) clones isolated in a Dutch university hospital, situated near the borders of Belgium and Germany, between 2002 and 2006. MRSA strains (n = 175) were characterized using spa and SCCmec typing. The presence of Panton Valentine leukocidin (PVL) was determined. Between 2002 and 2005, ST5-MRSA-IV was predominant, and the spa type of ST5-MRSA-IV changed from t002 to t447. ST5-MRSA-I, ST5-MRSA-II, ST228-MRSA-I, and ST247-MRSA-I were also observed in this period. From 2004, the MRSA genetic background became more diverse, and in 2006, ST5-MRSA-IV was only sporadically observed. From 2005, ST5-MRSA-II, ST8-MRSA-IV, ST22-MRSA-IV, and ST45-MRSA-IV were increasingly observed. Several other MRSA clones, such as ST239-MRSA-III, were found sporadically. Four PVL-positive MRSA isolates were observed, associated with ST80-MRSA-IV and ST8-MRSA-IV. ST5-MRSA-I, ST5-MRSA-II, ST5-MRSA-IV, and ST228-MRSA-I have not been described previously in The Netherlands.
- Published
- 2009
45. Early-life rotavirus and norovirus infections in relation to development of atopic manifestation in infants
- Author
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Marion Koopmans, Monique Mommers, Foekje Stelma, Carel Thijs, R. van Ree, D.A. Brouwer, Barry Rockx, Edward Dompeling, Ellen E. Stobberingh, Johan Reimerink, Other departments, AII - Amsterdam institute for Infection and Immunity, APH - Amsterdam Public Health, Experimental Immunology, Medische Microbiologie, Kindergeneeskunde, Epidemiologie, RS: CAPHRI School for Public Health and Primary Care, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: NUTRIM - R2 - Gut-liver homeostasis
- Subjects
Male ,Pediatrics ,medicine.medical_specialty ,Immunology ,Antibodies, Viral ,medicine.disease_cause ,Rotavirus Infections ,Dermatitis, Atopic ,Atopy ,Risk Factors ,Seroepidemiologic Studies ,Wheeze ,Rotavirus ,Hypersensitivity ,Odds Ratio ,medicine ,Humans ,Immunology and Allergy ,Risk factor ,Antigens, Viral ,Caliciviridae Infections ,Netherlands ,Respiratory Sounds ,Asthma ,business.industry ,Incidence (epidemiology) ,Norovirus ,Infant ,Odds ratio ,Allergens ,Immunoglobulin E ,medicine.disease ,Pathogenesis and modulation of inflammation [N4i 1] ,Child, Preschool ,Female ,medicine.symptom ,business ,Cohort study - Abstract
Item does not contain fulltext BACKGROUND: The increase in incidence of atopic diseases (ADs) in the developed world over the past decades has been associated with reduced exposure of childhood infections. OBJECTIVE: To investigate the relation between early intestinal viral infections in relation to the development of atopic symptoms (eczema, wheeze and atopic sensitization) in the first and second year(s) of life. METHODS: In the KOALA Birth Cohort Study, we assessed IgG seropositivity for rota- and norovirus (GGI.1 and GGII.4) at 1 year of age. This was related to allergic sensitization [specific immunoglobulin E (IgE)] at 1 and 2 years, and parent reported eczema and wheeze in the first 2 years, using logistic regression analysis adjusted for confounders. RESULTS: Rotavirus seropositivity (39%) was associated with an unexpected higher risk of recurrent wheeze in the first and second year of life [adjusted odds ratio (OR) 3.1 and 95% confidence intervals (CI) 1.1-9.1] and persistent and new recurrent wheeze (adjusted OR 2.7 and 95% CI 1.1-6.2). No further associations were found between intestinal viral seropositivity and atopic manifestations. CONCLUSION: Our data did not show a clear protection by enteric viral infections in young children on development of IgE response to allergens, but rotavirus infection in the first year was a risk factor for wheeze. However, this needs to be followed up to older ages in order to establish the true importance of intestinal viral infections and especially cumulative effects in AD aetiology. Exposure to rotavirus may offer a new and interesting focus on infant wheeze and later asthma development.
- Published
- 2009
46. Soluble Triggering Receptor Expressed on Myeloid cells-1 in bronchoalveolar lavage fluid is not predictive for ventilator-associated pneumonia
- Author
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Judith Beuving, Guy J. Oudhuis, Annelies Verbon, Guul ten Velde, Catharina F. M. Linssen, Dennis C J J Bergmans, Ellen E. Stobberingh, Medische Microbiologie, Pulmonologie, and RS: NUTRIM - R3 - Chronic inflammatory disease and wasting
- Subjects
Male ,Myeloid ,Enzyme-Linked Immunosorbent Assay ,Respiratory tract infections ,Critical Care and Intensive Care Medicine ,Artificial respiration ,Risk Assessment ,Sepsis ,Intensive care ,medicine ,Humans ,Receptors, Immunologic ,Aged ,Membrane Glycoproteins ,medicine.diagnostic_test ,business.industry ,Brief Report ,Ventilator-associated pneumonia ,Pneumonia, Ventilator-Associated ,Middle Aged ,bacterial infections and mycoses ,medicine.disease ,Triggering Receptor Expressed on Myeloid Cells-1 ,respiratory tract diseases ,Biological marker ,Pneumonia ,Early Diagnosis ,Bronchoalveolar lavage ,medicine.anatomical_structure ,Gene Expression Regulation ,Immunology ,Biomarker (medicine) ,Female ,business ,Bronchoalveolar Lavage Fluid ,Biomarkers ,Forecasting - Abstract
PURPOSE: Soluble Triggering Receptor Expressed on Myeloid cells-1 (sTREM-1) has proven to be a good biomarker for sepsis. For the diagnosis ventilator-associated pneumonia (VAP), however, there have only been a few, relatively small, studies on the role of this receptor. The aim of the study was to evaluate the usefulness of sTREM-1 in bronchoalveolar lavage fluid (BALF) from Intensive Care Unit patients as rapid diagnostic test for VAP. METHODS: The concentration of sTREM-1 in 240 BALF samples was measured using a quantitative sandwich enzyme immunoassay. Two researchers who were blind to the assay results determined whether a VAP was present or not. Clinical suspicion of a VAP was confirmed by the presence of > or = 2% cells containing intracellular organisms and/or a quantitative culture result of > or = 10(4) colony forming units per millilitre BALF. RESULTS: The mean concentration of sTREM-1 was significantly higher in the BALF of patients with confirmed VAP than in that of patients without confirmed VAP. However, the area under the receiver-operating characteristic curve was 0.58 (95% confidence interval 0.50-0.65, P = 0.04). CONCLUSIONS: The results imply that the sTREM-1 assay in BALF may not be discriminative for VAP.
- Published
- 2009
47. The population structure of Staphylococcus aureus among general practice patients from The Netherlands
- Author
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G.A. Donker, S. Nys, Ellen E. Stobberingh, Silvie Sebastian, Christel Driessen, Ruud H. Deurenberg, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and Faculteit Medische Wetenschappen/UMCG
- Subjects
DNA, Bacterial ,Adult ,Microbiology (medical) ,Staphylococcus aureus ,Adolescent ,Genotype ,Antibiotic resistance ,medicine.drug_class ,Fusidic acid ,Mupirocin ,Microbial Sensitivity Tests ,Drug resistance ,Nose ,Staphylococcal infections ,medicine.disease_cause ,Macrolide Antibiotics ,Microbiology ,Young Adult ,chemistry.chemical_compound ,80 and over ,Prevalence ,medicine ,Humans ,Child ,Aged ,Netherlands ,Antibacterial agent ,Aged, 80 and over ,business.industry ,Bacterial ,The Netherlands ,DNA ,General Medicine ,Middle Aged ,Staphylococcal Infections ,S. aureus ,medicine.disease ,DNA Fingerprinting ,spa typing ,Anti-Bacterial Agents ,Infectious Diseases ,chemistry ,general practitioner ,Carrier State ,Family Practice ,business ,medicine.drug - Abstract
To investigate the prevalence, the antibiotic resistance pattern and the population structure of Staphylococcus aureus, S. aureus isolates from the anterior nostrils of patients of general practitioners (GPs) were analysed. Insight into the S. aureus population structure is essential, as nasal carriers of S. aureus are at increased risk of developing an S. aureus infection. S. aureus was isolated from nasal swabs from 2691 patients with no sign of an infection collected in 29 GP practices in The Netherlands. The susceptibility pattern for several classes of antibiotics was determined, as well as the S. aureus genetic background, using spa typing. S. aureus was isolated from 617 of the 2691 (23%) nasal swabs. The prevalences of resistance to ciprofloxacin, co-trimoxazole, fusidic acid, macrolides and mupirocin were 0.2%, 0%, 6%, 5% and 1%, respectively. Half of the isolates were associated with a genetic background common to the major methicillin-resistant S. aureus (MRSA) clones, e.g. clonal complex (CC)1, CC5, CC8, CC22, CC30 and CC45, and the remainder were mainly associated with CC7, CC12, CC15, CC26, CC51 and CC101. The low prevalences of resistance suggest that, in the Dutch situation, S. aureus isolates from patients visiting their GP because of complaints not related to infection do not represent a large reservoir of antibiotic resistance genes. Although no MRSA isolates were found, the genetic background of some of the S. aureus isolates is commonly observed among community-associated (CA)-MRSA clones (CC1, CC8 and CC30), and this might suggest that these isolates have the potential to become CA-MRSA.
- Published
- 2009
48. The evolution of Staphylococcus aureus
- Author
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Ruud H. Deurenberg, Ellen E. Stobberingh, Faculteit Medische Wetenschappen/UMCG, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, and RS: CAPHRI School for Public Health and Primary Care
- Subjects
Microbiology (medical) ,Electrophoresis ,Methicillin-Resistant Staphylococcus aureus ,Staphylococcus aureus ,Evolution ,Biology ,medicine.disease_cause ,Staphylococcal infections ,Microbiology ,Chromosomes ,Evolution, Molecular ,Pulsed-Field ,Methicillin ,Genetics ,Pulsed-field gel electrophoresis ,medicine ,Humans ,Typing ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Cross Infection ,Gel ,Molecular epidemiology ,SCCmec ,Bacterial ,Molecular ,Sequence Analysis, DNA ,DNA ,biochemical phenomena, metabolism, and nutrition ,Chromosomes, Bacterial ,Staphylococcal Infections ,medicine.disease ,bacterial infections and mycoses ,Virology ,Methicillin-resistant Staphylococcus aureus ,Electrophoresis, Gel, Pulsed-Field ,Bacterial Typing Techniques ,Community-Acquired Infections ,Infectious Diseases ,Multilocus sequence typing ,Methicillin Resistance ,Sequence Analysis - Abstract
A broad variety of infections, ranging from minor infections of the skin to post-operative wound infections can be caused by Staphylococcus aureus. The adaptive power of S. aureus to antibiotics leaded, in the early 1960s, to the emergence of methicillin-resistant S. aureus (MRSA). The cause of resistance to methicillin and all other beta-lactam antibiotics is the mecA gene, which is situated on a mobile genetic element, the staphylococcal cassette chromosome mec (SCCmec). Seven major variants of SCCmec, type I to VII, are distinguished. The most important techniques used to investigate the molecular epidemiology of S. aureus are pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), S. aureus protein A (spa) typing and SCCmec typing (only for MRSA). These techniques have been used to study the evolution of the MRSA clones that have emerged since the early 1960s, and to study their subsequent worldwide dissemination. The early MRSA clones were hospital-associated (HA-MRSA). However, from the late 1990s, community-associated MRSA (CA-MRSA) clones emerged worldwide. CA-MRSA harbors SCCmec type IV, V or VII, the majority belong to other S. aureus lineages compared to HA-MRSA, and CA-MRSA is often associated with the presence of the toxin Panton-Valentine leukocidin (PVL). However, during recent years, the distinction between HA-MRSA and CA-MRSA has started to disappear, and CA-MRSA is now endemic in many US hospitals. MRSA probably originated trough the transfer of SCCmec into a limited number of methicillin-sensitive S. aureus (MSSA) lineages. This review describes the latest observations about the structure of SCCmec, the techniques used to study the molecular epidemiology and evolution of S. aureus as well as some challenges that researchers face in the future.
- Published
- 2008
49. Trends in antimicrobial susceptibility of Escherichia coli isolates from urology services in The Netherlands (1998–2005)
- Author
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S. Nys, Jacomina A. A. Hoogkamp-Korstanje, Peter Terporten, and Ellen E. Stobberingh
- Subjects
Microbiology (medical) ,Veterinary medicine ,Time Factors ,Microbial Sensitivity Tests ,Urine ,Microbiology ,Antibiotic resistance ,Drug Resistance, Multiple, Bacterial ,Drug Resistance, Bacterial ,Escherichia coli ,medicine ,Humans ,Pharmacology (medical) ,Escherichia coli Infections ,Netherlands ,Antibacterial agent ,Pharmacology ,Geography ,business.industry ,Sulfamethoxazole ,Amoxicillin ,Trimethoprim ,Anti-Bacterial Agents ,Multiple drug resistance ,Infectious Diseases ,Nitrofurantoin ,Urinary Tract Infections ,business ,medicine.drug ,Piperacillin - Abstract
An increase in antibiotic resistance of Escherichia coli, the most common pathogen in urinary tract infections (UTIs), is encountered worldwide. Optimal treatment of UTIs will contribute substantially to limit antibiotic use and antimicrobial resistance. This study determined trends in antimicrobial resistance of uropathogenic E. coli, which can be of use to optimize UTI guidelines.During 1998-2005, E. coli from urine samples of patients attending urology services were collected in three regions in The Netherlands: north-east (NE, n = 1084), west (W, n = 1064) and south (S, n = 1212). The antibiotic susceptibility was determined using microbroth dilution following CLSI guidelines. E. coli ATCC 35218 and ATCC 25922 were used as reference strains.Amoxicillin resistance remained stable over time (37% to 47%), but was higher in the south (44%) compared with the other regions (40%; P0.02). Resistance to piperacillin increased from 4% (1998) to 32% (2005; P0.001), and resistance to fluoroquinolones increased from 6% to 13% (P0.01). Interregional differences were observed for resistance to piperacillin (NE 10%, W 12%, S 14%; P0.05) and to fluoroquinolones (NE 7%, W 13%, S 8%; P0.001). Trimethoprim +/- sulfamethoxazole resistance remained stable (27% to 37%), as did that of nitrofurantoin (4% to 9%). The percentage of strains with multidrug resistance (resistance to three or more groups of antibiotics) for each region increased over time (P0.05).Antibiotic resistance was fairly constant over time for most agents tested, except for piperacillin and the fluoroquinolones. Regional differences were observed for several compounds. National and regional surveillance of antibiotic resistance is important to keep therapeutic guidelines up-to-date and adequate for the treatment of resistant microorganisms.
- Published
- 2008
50. Molecular characterization of Staphylococcus aureus bloodstream isolates collected in a Dutch university hospital between 1999 and 2006
- Author
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E. Nulens, Silvie Sebastian, Frank H. van Tiel, Patrick S. Beisser, Helke A. van Dessel, Ruud H. Deurenberg, Ellen E. Stobberingh, Medische Microbiologie, RS: NUTRIM - R3 - Chronic inflammatory disease and wasting, RS: CAPHRI School for Public Health and Primary Care, and Faculteit Medische Wetenschappen/UMCG
- Subjects
DNA, Bacterial ,Microbiology (medical) ,Staphylococcus aureus ,Micrococcaceae ,Genotype ,Bacteremia ,Biology ,medicine.disease_cause ,Staphylococcal infections ,Microbiology ,Hospitals, University ,medicine ,Cluster Analysis ,Humans ,Netherlands ,University ,Bacterial ,Bacteriology ,DNA ,Staphylococcal Infections ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,biology.organism_classification ,University hospital ,bacterial infections and mycoses ,Virology ,DNA Fingerprinting ,Hospitals ,Bacterial Typing Techniques ,DNA profiling - Abstract
We observed that, between 1999 and 2006, up to 50% of the methicillin-susceptible Staphylococcus aureus (MSSA) bloodstream isolates in our hospital had a genetic background common to endemic methicillin-resistant S. aureus clones (clonal complex 5 [CC5], CC8, CC22, CC30, and CC45). Furthermore, several successful MSSA lineages, such as CC7 and CC15, were observed.
- Published
- 2008
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