404 results on '"Elizabeth J, Phillips"'
Search Results
2. Multiomic single-cell sequencing defines tissue-specific responses in Stevens-Johnson syndrome and toxic epidermal necrolysis
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Andrew Gibson, Ramesh Ram, Rama Gangula, Yueran Li, Eric Mukherjee, Amy M. Palubinsky, Chelsea N. Campbell, Michael Thorne, Katherine C. Konvinse, Phuti Choshi, Pooja Deshpande, Sarah Pedretti, Mark W. Fear, Fiona M. Wood, Richard T. O’Neil, Celestine N. Wanjalla, Spyros A. Kalams, Silvana Gaudieri, Rannakoe J. Lehloenya, Samuel S. Bailin, Abha Chopra, Jason A. Trubiano, On behalf of the AUS-SCAR Consortium, Jonny G. Peter, On behalf of the AFRiSCAR Consortium, Simon A. Mallal, and Elizabeth J. Phillips
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Science - Abstract
Abstract Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS/TEN) is a rare but life-threatening cutaneous drug reaction mediated by human leukocyte antigen (HLA) class I-restricted CD8+ T cells. For unbiased assessment of cellular immunopathogenesis, here we perform single-cell (sc) transcriptome, surface proteome, and T cell receptor (TCR) sequencing on unaffected skin, affected skin, and blister fluid from 15 SJS/TEN patients. From 109,888 cells, we identify 15 scRNA-defined subsets. Keratinocytes express markers indicating HLA class I-restricted antigen presentation and appear to trigger the proliferation of and killing by cytotoxic CD8+ tissue-resident T cells that express granulysin, granzyme B, perforin, LAG3, CD27, and LINC01871, and signal through the PKM, MIF, TGFβ, and JAK-STAT pathways. In affected tissue, cytotoxic CD8+ T cells express private expanded and unexpanded TCRαβ that are absent or unexpanded in unaffected skin, and mixed populations of macrophages and fibroblasts express pro-inflammatory markers or those favoring repair. This data identifies putative cytotoxic TCRs and therapeutic targets.
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- 2024
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3. Exploring cytokine outputs for ex vivo diagnostics in drug reaction with eosinophilia and systemic symptoms (DRESS)
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Ana M. Copaescu, MD, FRCPC, Effie Mouhtouris, BSc, Fiona James, BBiomedSci, Michelle S.Y. Goh, MBBS, FACD, Elizabeth J. Phillips, MD, FRCPC, FRACP, and Jason A. Trubiano, MBBS, BBiomedSci, FRACP, PhD
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Antibiotic hypersensitivity ,T-Lymphocytes ,Drug reaction with eosinophilia and systemic symptoms ,Enzyme-linked immunoSpot ,Interferon-gamma ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Background: In an exploratory study to assess the potential to individualize T-cell diagnostics in antibiotic-associated severe T-cell mediated hypersensitivity, we focused on drug reaction with eosinophilia and systemic symptoms (DRESS) and the related cytokine outputs IL-4 and IL-5. Methods: Patients with well-phenotyped RegiSCAR ≥4 DRESS, positive intradermal skin testing, and a previous negative IFN-γ Enzyme-Linked ImmunoSpot (ELISpot) assay were prospectively recruited. We specifically performed an ELISpot assay with IL-4 and IL-5 cytokine outputs. As comparative controls, these cytokine outputs were performed simultaneously in patients with a positive ex vivo IFN-γ release ELISpot result. Results: Four antibiotic-associated DRESS cases were included. The IL-4 and IL-5 output ELISpot assay demonstrated various results among these patients, with at least 1 cytokine present in all the cases. As for the 2 controls with known positive IFN-γ release, compared to the IFN-γ secretion, the cytokine output using IL-4 and IL-5 showed an increased positivity. Conclusion: In patients where the early response has suggested a TH2 response such as DRESS, IL-4 and IL-5 cytokine outputs could present an investigational advantage, including when IFN-γ is negative. In the future, larger prospective studies are required to understand the role of varied cytokine outputs in T-cell-mediated hypersensitivities.
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- 2024
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4. Carboxymethylcellulose: A hidden culprit in immediate hypersensitivity reactions after triamcinolone injections
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Aiwei Yan, MD, Edward Fernandez, MD, Matthew Steven Krantz, MD, Basil M. Kahwash, MD, Elizabeth J. Phillips, MD, and Cosby A. Stone, Jr., MD, MPH
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Carboxymethylcellulose ,CMC ,hypersensitivity ,allergy ,triamcinolone ,anaphylaxis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
We aim to bring awareness of allergies to excipients such as carboxymethylcellulose as “hidden dangers” that can be easily missed in diagnosis, leading to severe effects on patient health, and falsely limit the drug treatments that a patient can receive.
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- 2024
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5. Rituximab Therapy for Insulin Allergy in Type-1 Diabetes Mellitus
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Cory E. DeClue, MS, MD, Elizabeth J. Phillips, MD, Carlos Prieto-Granada, MD, and Shichun Bao, MD, PhD
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insulin allergy ,diabetes mellitus ,rituximab ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Background/Objective: Allergic reactions to insulin have decreased significantly since the introduction of human insulin preparation, but up to 2.4% of insulin-treated patients can still be affected. Rituximab is a monoclonal antibody against the surface antigen CD20 on B lymphocytes, and it is largely used to treat lymphoproliferative and rheumatological conditions. In a very few published case reports, rituximab has been used as an investigational drug to treat severe insulin allergy refractory to conventional therapy. Here, we present an unusual case of a 40-year-old woman with T1DM and severe insulin allergy that was successfully treated with rituximab. Case Report: The patient was diagnosed with T1DM at age 37. Three years later, skin reactions developed at insulin administration sites. These consisted of pruritic and painful erythema and wheals that appeared within 1 to 4 h of insulin administration, followed by induration, subcutaneous nodules, and surrounding lipodystrophy that lasted several days with spontaneous resolution in 1 to 2 weeks. Extensive immunologic evaluation suggested the reaction was related to insulin allergy. Skin biopsy revealed sublobular panniculitis. After failed conventional treatment with antihistamines, glucocorticoid, and various insulins, rituximab infusion as an investigational approach was initiated. This was very successful, leading to prolonged remission of her insulin allergy. Discussion: First-line management of insulin allergy should focus on second-generation antihistamines and switching insulin preparation. In refractory cases, systemic immunotherapy with rituximab can be a viable option. Conclusion: Practitioners should be aware that in patients with insulin allergy who fail conventional treatment, immunotherapy with rituximab can be a viable option.
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- 2024
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6. The Australasian Registry for Severe Cutaneous Adverse Reactions (AUS-SCAR) – Providing a roadmap for closing the diagnostic, patient, and healthcare gaps for a group of rare drug eruptions
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Fiona James, BBiomedSci, Michelle S. Goh, MBBS, Sara Vogrin, MBiostat, Irvin Ng, PhD, Abby P. Douglas, PhD, Natasha E. Holmes, PhD, Kyra YL. Chua, PhD, Joseph De Luca, MBBS, Pooja Sharma, MD, Celia Zubrinich, MPhil, Ar K. Aung, MBBS, Douglas Gin, MBBS, Belinda Lambros, MAdvNursPrac, Chris Baker, MBBS, Peter Foley, MD, Alvin H. Chong, MMed, Francis Thien, MD, Jie S. Fok, MBBS, John Su, MBBS, Laura Scardamaglia, MBBS, Andrew Awad, MD, Steven Tong, PhD, Douglas Johnson, PhD, Jack Godsell, MBBS, Alexis Arasu, MBBS, Sara Barnes, MBA, Samar Ojaimi, PhD, Adrian Mar, MBBS, James Yun, PhD, Nikhita Ange, MBBCh, Winnie W.Y. Tong, PhD, Andrew Carr, DSc, Jacqueline Loprete, PhD, Constance H. Katelaris, PhD, Dana Slape, MBBS, Karuna Keat, MBBS, Timothy A. West, MBBS, Monique Lee, MBBS, William Smith, PhD, Pravin Hissaria, MD, Shireen Sidhu, MBBS, Sonja Janson, MBBS, Sudharsan Venkatesan, MBBS, Jane Davies, PhD, Michael J. Lane, MBBS, Andrew M. Redmond, MBBS, Ivan Robertson, MBBS, Amy Legg, GradDipClinPharm, Suran Fernando, PhD, Therese Boyle, MA, Jamma Li, MPhil, Elizabeth J. Phillips, MD, Heather Cleland, MBBS, Johannes S. Kern, MD, and Jason A. Trubiano, PhD
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Delayed hypersensitivity ,T-cell mediated hypersensitivity ,Stevens-Johnson syndrome ,Toxic epidermal necrolysis ,Acute generalized exanthematous pustulosis ,Drug reaction with eosinophilia and systemic symptoms ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Background: Severe cutaneous adverse reactions (SCAR) are a group of delayed presumed T-cell mediated hypersensitivities associated with significant morbidity and mortality. Despite their shared global healthcare burden and impact, the clinical phenotypes, genomic predisposition, drug causality, and treatment outcomes may vary. We describe the establishment and results from the first Australasian registry for SCAR (AUS-SCAR), that via a collaborative network advances strategies for the prevention, diagnosis and treatment of SCAR. Methods: Prospective multi-center registry of SCAR in Australian adult and adolescents, with planned regional expansion. The registry collects externally verified phenotypic data drug causality, therapeutics and long-term patient outcomes. In addition, biorepository specimens and DNA are collected at participating sites. Results: we report on the first 100 patients enrolled in the AUS-SCAR database. DRESS (50%) is the most predominant phenotype followed by SJS/TEN (39%) and AGEP (10%), with median age of 52 years old (IQR 37.5, 66) with 1:1 male-to-female ratio. The median latency for all implicated drugs is highly variable but similar for DRESS (median 15 days IQR 5,25) and SJS/TEN (median 21 days, IQR 7,27), while lowest for AGEP (median 2.5 days, IQR 1,8). Antibiotics (54.5%) are more commonly listed as primary implicated drug compare with non-antibiotics agent (45.5%). Mortality rate at 90 days was highest in SJS/TEN at 23.1%, followed by DRESS (4%) and AGEP (0%). Conclusion: In the first prospective national phenotypic and biorepository of SCAR in the southern hemisphere we demonstrate notable differences to other reported registries; including DRESS-predominant phenotype, varied antibiotic causality and low overall mortality rate. This study also highlights the lack of standardised preventative pharmacogenomic measures and in vitro/in vivo diagnostic strategies to ascertain drug causality. Trial registration: ANZCTR ACTRN12619000241134. Registered 19 February 2019.
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- 2024
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7. PheMIME: an interactive web app and knowledge base for phenome-wide, multi-institutional multimorbidity analysis.
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Siwei Zhang, Nick Strayer, Tess Vessels, Karmel Choi, Geoffrey W. Wang, Yajing Li, Cosmin Adrian Bejan, Ryan S. Hsi, Alex Bick, Digna R. Velez Edwards, Michael R. Savona, Elizabeth J. Phillips, Jill M. Pulley, Wesley H. Self, Consuelo H. Wilkins, Dan M. Roden, Jordan W. Smoller, Douglas M. Ruderfer, and Yaomin Xu
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- 2024
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8. Editorial: Stevens Johnson syndrome: past, present, and future directions
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Hajirah N. Saeed, Robert Micheletti, and Elizabeth J. Phillips
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SJS ,TEN ,HLA ,complications ,community ,testing ,Medicine (General) ,R5-920 - Published
- 2024
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9. Association of KIR2DL5, KIR2DS5, and KIR2DS1 allelic variation and atopic dermatitis
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David J. Margolis, Nandita Mitra, Ole J. Hoffstad, Ronald Berna, Brian S. Kim, Abha Chopra, and Elizabeth J. Phillips
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Medicine ,Science - Abstract
Abstract Natural killer cells (NK) have been associated with the pathophysiology of atopic dermatitis (AD). NK function is regulated by killer cell Ig-like receptor family (KIR) receptors that interact with HLA ligands. The study goal was to focus on allelic variation in genes KIR2DL5, KIR2DS5, and KIR2DS1 with respect to AD. This was a case–control study of individuals with (n = 313) and without (n = 176) AD. Associations were estimated using logistic regression. The prevalence of KIR2DL5 was 52.5% (95% CI 48.0,57.0), KIR2DS5 was 33.0% (28.8,37.3), and KIR2DS1 was 33.6% (29.4,38.0). The presence of the KIR2DL5*001:01 increased the odds of having AD by about 86% (odds ratio (OR): 1.86(1.23,2.82) p = 0.003). The risk for individuals homozygous for KIR2DL5*001:01 was even greater (OR: 2.16 (95% CI 1.31,3.53) p = 0.0023). The odds of having AD with KIR2DL5*001:01 was similar in Whites and Blacks. Allelic variation in KIR2DS5 and KIR2DS1 was not associated with AD. There is no known HLA binding ligand for KIR2DL5. The effect of KIR2DL5*001:01 increased in the presence of HLA-B*-21TT leader sequence (2.46(1.37,4.41) p = 0.0025) and the HLA-C2 ligand (2.07 (1.37,4.41, p = 0.000002). Our study shows an independent association of the KIR2DL5*001:01 with AD and is the first study to associate AD with KIR allelic variation.
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- 2023
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10. Updates in SJS/TEN: collaboration, innovation, and community
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Madeline E. Marks, Ramya Krishna Botta, Riichiro Abe, Thomas M. Beachkofsky, Isabelle Boothman, Bruce C. Carleton, Wen-Hung Chung, Ricardo R. Cibotti, Roni P. Dodiuk-Gad, Christian Grimstein, Akito Hasegawa, Jay H. Hoofnagle, Shuen-Iu Hung, Benjamin Kaffenberger, Daniela Kroshinsky, Rannakoe J. Lehloenya, Michelle Martin-Pozo, Robert G. Micheletti, Maja Mockenhaupt, Keisuke Nagao, Suman Pakala, Amy Palubinsky, Helena B. Pasieka, Jonathan Peter, Munir Pirmohamed, Melissa Reyes, Hajirah N. Saeed, Jeffery Shupp, Chonlaphat Sukasem, Jhih Yu Syu, Mayumi Ueta, Li Zhou, Wan-Chun Chang, Patrice Becker, Teresa Bellon, Kemberlee Bonnet, Gianpiero Cavalleri, James Chodosh, Anna K. Dewan, Arturo Dominguez, Xinzhong Dong, Elena Ezhkova, Esther Fuchs, Jennifer Goldman, Sonia Himed, Simon Mallal, Alina Markova, Kerry McCawley, Allison E. Norton, David Ostrov, Michael Phan, Arthur Sanford, David Schlundt, Daniel Schneider, Neil Shear, Kanade Shinkai, Eric Tkaczyk, Jason A. Trubiano, Simona Volpi, Charles S. Bouchard, Sherrie J. Divito, and Elizabeth J. Phillips
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Stevens-Johnson Syndrome ,Toxic Epidermal Necrolysis ,severe adverse cutaneous drug reactions ,HLA genotyping ,pharmacogenomics ,body surface area ,Medicine (General) ,R5-920 - Abstract
Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis (SJS/TEN) is a predominantly drug-induced disease, with a mortality rate of 15–20%, that engages the expertise of multiple disciplines: dermatology, allergy, immunology, clinical pharmacology, burn surgery, ophthalmology, urogynecology, and psychiatry. SJS/TEN has an incidence of 1–5/million persons per year in the United States, with even higher rates globally. One of the challenges of SJS/TEN has been developing the research infrastructure and coordination to answer questions capable of transforming clinical care and leading to improved patient outcomes. SJS/TEN 2021, the third research meeting of its kind, was held as a virtual meeting on August 28–29, 2021. The meeting brought together 428 international scientists, in addition to a community of 140 SJS/TEN survivors and family members. The goal of the meeting was to brainstorm strategies to support the continued growth of an international SJS/TEN research network, bridging science and the community. The community workshop section of the meeting focused on eight primary themes: mental health, eye care, SJS/TEN in children, non-drug induced SJS/TEN, long-term health complications, new advances in mechanisms and basic science, managing long-term scarring, considerations for skin of color, and COVID-19 vaccines. The meeting featured several important updates and identified areas of unmet research and clinical need that will be highlighted in this white paper.
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- 2023
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11. Abacavir inhibits but does not cause self-reactivity to HLA-B*57:01-restricted EBV specific T cell receptors
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Anuradha Sooda, Francois Rwandamuriye, Celestine N. Wanjalla, Lichen Jing, David M. Koelle, Bjoern Peters, Shay Leary, Abha Chopra, Michael A. Calderwood, Simon A. Mallal, Rebecca Pavlos, Mark Watson, Elizabeth J. Phillips, and Alec J. Redwood
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Biology (General) ,QH301-705.5 - Abstract
HLA-B*57:01 restricted EBV-specific T-cell receptor specificity is altered by abacavir, suggesting a potentially inhibitory effect of abacavir on HLA-B*57:01 restricted TCR recognition.
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- 2022
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12. First-line therapy in drug reaction with eosinophilia and systemic symptoms (DReSS): Thinking beyond corticosteroids
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Ruud H. J. Verstegen, Elizabeth J. Phillips, and David N. Juurlink
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DReSS (drug reaction with eosinophilia and systemic symptoms) ,adverse (side) effects ,cyclosporine ,targeted therapy ,severe cutaneous adverse drug reaction ,Medicine (General) ,R5-920 - Published
- 2023
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13. Interactive network-based clustering and investigation of multimorbidity association matrices with associationSubgraphs.
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Nick Strayer, Siwei Zhang, Lydia Yao, Tess Vessels, Cosmin Adrian Bejan, Ryan S. Hsi, Jana K. Shirey-Rice, Justin M. Balko, Douglas B. Johnson, Elizabeth J. Phillips, Alex Bick, Todd L. Edwards, Digna R. Velez Edwards, Jill M. Pulley, Quinn Stanton Wells, Michael R. Savona, Nancy J. Cox, Dan M. Roden, Douglas M. Ruderfer, and Yaomin Xu
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- 2023
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14. Physical and mental health impact of Stevens-Johnson syndrome/toxic epidermal necrolysis and post-hospital discharge care: Identifying practice gaps
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Alexandra J. Coromilas, MD, Sherrie J. Divito, MD, PhD, Elizabeth J. Phillips, MD, and Robert G. Micheletti, MD
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drug hypersensitivity ,long term health sequelae ,postdischarge care ,severe cutaneous adverse drug reaction ,Stevens-Johnson syndrome ,toxic epidermal necrolysis ,Dermatology ,RL1-803 - Published
- 2023
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15. Integrating gene expression and clinical data to identify drug repurposing candidates for hyperlipidemia and hypertension
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Patrick Wu, QiPing Feng, Vern Eric Kerchberger, Scott D. Nelson, Qingxia Chen, Bingshan Li, Todd L. Edwards, Nancy J. Cox, Elizabeth J. Phillips, C. Michael Stein, Dan M. Roden, Joshua C. Denny, and Wei-Qi Wei
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Science - Abstract
Prioritizing drug repurposing candidates for downstream studies remains challenging. Here, the authors present a high-throughput approach to identify and validate drug repurposing candidates, integrating human gene expression, drug perturbation, and clinical data from publicly available resources.
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- 2022
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16. Stevens-Johnson syndrome and toxic epidermal necrolysis: A systematic review of PubMed/MEDLINE case reports from 1980 to 2020
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Liqin Wang, Sheril Varghese, Fatima Bassir, Ying-Chin Lo, Carlos A. Ortega, Sonam Shah, Kimberly G. Blumenthal, Elizabeth J. Phillips, and Li Zhou
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toxic epidermal necrolysis ,Stevens-Johnson syndrome ,drug-related side effects and adverse reactions ,case report ,review literature ,Medicine (General) ,R5-920 - Abstract
BackgroundStevens-Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN) are rare, life-threatening immunologic reactions. Prior studies using electronic health records, registries or reporting databases are often limited in sample size or lack clinical details. We reviewed diverse detailed case reports published over four decades.MethodsStevens-Johnson syndrome and toxic epidermal necrolysis-related case reports were identified from the MEDLINE database between 1980 and 2020. Each report was classified by severity (i.e., SJS, TEN, or SJS-TEN overlap) after being considered a “probable” or “definite” SJS/TEN case. The demographics, preconditions, culprit agents, clinical course, and mortality of the cases were analyzed across the disease severity.ResultsAmong 1,059 “probable” or “definite” cases, there were 381 (36.0%) SJS, 602 (56.8%) TEN, and 76 (7.2%) SJS-TEN overlap cases, with a mortality rate of 6.3%, 24.4%, and 21.1%, respectively. Over one-third of cases had immunocompromised conditions preceding onset, including cancer (n = 194,18.3%), autoimmune diseases (n = 97, 9.2%), and human immunodeficiency virus (HIV) (n = 52, 4.9%). During the acute phase of the reaction, 843 (79.5%) cases reported mucous membrane involvement and 210 (19.8%) involved visceral organs. Most cases were drug-induced (n = 957, 90.3%). A total of 379 drug culprits were reported; the most frequently reported drug were antibiotics (n = 285, 26.9%), followed by anticonvulsants (n = 196, 18.5%), analgesics/anesthetics (n = 126, 11.9%), and antineoplastics (n = 120, 11.3%). 127 (12.0%) cases reported non-drug culprits, including infections (n = 68, 6.4%), of which 44 were associated with a mycoplasma pneumoniae infection and radiotherapy (n = 27, 2.5%).ConclusionAn expansive list of potential causative agents were identified from a large set of literature-reported SJS/TEN cases, which warrant future investigation to understand risk factors and clinical manifestations of SJS/TEN in different populations.
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- 2022
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17. Study protocol: Australasian Registry of Severe Cutaneous Adverse Reactions (AUS-SCAR)
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Andrew Carr, Francis Thien, Jason Trubiano, Natasha E Holmes, Sara Vogrin, Winnie Tong, Heather Cleland, Johannes S Kern, Fiona James, James Yun, Jack Bourke, Ana-Maria Copaescu, Michelle S Y Goh, Effie Mouhtouris, Kyra Y L Chua, Andrew Awad, Joseph F De Luca, Celia Zubrinich, Douglas Gin, Abby Douglas, Constance H Katelaris, Sara Barnes, William B Smith, Tara Anderson, Amy Legg, Laura K Mackay, Ar Kar Aung, and Elizabeth J Phillips
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Medicine - Abstract
Introduction Severe cutaneous adverse reactions (SCAR) are a group of T cell-mediated hypersensitivities associated with significant morbidity, mortality and hospital costs. Clinical phenotypes include Stevens-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN), drug reaction with eosinophilia and systemic symptoms (DRESS) and acute generalised exanthematous pustulosis (AGEP). In this Australasian, multicentre, prospective registry, we plan to examine the clinical presentation, drug causality, genomic predictors, potential diagnostic approaches, treatments and long-term outcomes of SCAR in Australia and New Zealand.Methods and analysis Adult and adolescent patients with SCAR including SJS, TEN, DRESS, AGEP and another T cell-mediated hypersensitivity, generalised bullous fixed drug eruption, will be prospectively recruited. A waiver of consent has been granted for some sites to retrospectively include cases which result in early mortality. DNA will be collected for all prospective cases. Blood, blister fluid and skin biopsy sampling is optional and subject to patient consent and site capacity. To develop culprit drug identification and prevention, genomic testing will be performed to confirm human leukocyte antigen (HLA) type and ex vivo testing will be performed via interferon-γ release enzyme linked immunospot assay using collected peripheral blood mononuclear cells. The long-term outcomes of SCAR will be investigated with a 12-month quality of life survey and examination of prescribing and mortality data.Ethics and dissemination This study was reviewed and approved by the Austin Health Human Research Ethics Committee (HREC/50791/Austin-19). Results will be published in peer-reviewed journals and presented at relevant conferences.Trial registration number Australian New Zealand Clinical Trials Registry (ACTRN12619000241134).
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- 2022
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18. Standards for practical intravenous rapid drug desensitization & delabeling: A WAO committee statement
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Emilio Alvarez-Cuesta, MD, PhD, MQM, Ricardo Madrigal-Burgaleta, LMS, MD, PhD, Ana D. Broyles, MD, Javier Cuesta-Herranz, MD, PhD, Maria Antonieta Guzman-Melendez, MD, PhD, Michelle C. Maciag, MD, Elizabeth J. Phillips, MD, Jason A. Trubiano, MBBS, PhD, Johnson T. Wong, MD, Ignacio Ansotegui, MD, PhD, F. Runa Ali, MBBS, PhD, FRCP, Denisse Angel-Pereira, MD, Aleena Banerji, MD, Maria Pilar Berges-Gimeno, MD, PhD, Lorena Bernal-Rubio, MD, Knut Brockow, MD, Ricardo Cardona Villa, MD, Mariana C. Castells, MD, PhD, Jean-Christoph Caubet, MD, Yoon-Seok Chang, MD, PhD, Luis Felipe Ensina, MD, MSc, PhD, Manana Chikhladze, PhD, Anca Mirela Chiriac, MD, PhD, Weng-Hung Chung, MD, PhD, Motohiro Ebisawa, MD, PhD, Bryan Fernandes, MBBS, MRCP, Lene Heise Garvey, MD, PhD, Maximiliano Gomez, MD, PhD, Javier Gomez Vera, MD, Sandra Gonzalez Diaz, MD, PhD, David I. Hong, MD, Juan Carlos Ivancevich, MD, Hye-Ryun Kang, MD, PhD, David A. Khan, MD, Merin Kuruvilla, MD, Jose Ignacio Larco Sousa, MD, Patricia Latour-Staffeld, MD, Anne Y. Liu, MD, Eric Macy, MD, Hans Jorgen Malling, MD, Jorge Maspero, MD, Sara M. May, MD, Cristobalina Mayorga, PhD, Miguel A. Park, MD, Jonathan Peter, MBChB, PhD, Matthieu Picard, MD, FRCPC, Tito Rodriguez-Bouza, MD, PhD, Antonino Romano, MD, Mario Sanchez-Borges, MD, Luciana Kase Tanno, MD, PhD, Maria Jose Torres, MD, PhD, Alicia Ureña-Tavera, MD, Rocco L. Valluzzi, MD, Gerald W. Volcheck, MD, and Masao Yamaguchi, MD, PhD
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Drug allergy ,Drug desensitization ,Drug challenge ,Drug provocation test ,Delabeling ,Chemotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Drug hypersensitivity reactions (DHRs) to intravenous drugs can be severe and might leave patients and doctors in a difficult position where an essential treatment or intervention has to be suspended. Even if virtually any intravenous medication can potentially trigger a life-threatening DHR, chemotherapeutics, biologics, and antibiotics are amongst the intravenous drugs most frequently involved in these reactions. Admittedly, suspending such treatments may negatively impact the survival outcomes or the quality of life of affected patients.Delabeling pathways and rapid drug desensitization (RDD) can help reactive patients stay on first-choice therapies instead of turning to less efficacious, less cost-effective, or more toxic alternatives. However, these are high-complexity and high-risk techniques, which usually need expert teams and allergy-specific techniques (skin testing, in vitro testing, drug provocation testing) to ensure safety, an accurate diagnosis, and personalized management. Unfortunately, there are significant inequalities within and among countries in access to allergy departments with the necessary expertise and resources to offer these techniques and tackle these DHRs optimally.The main objective of this consensus document is to create a great benefit for patients worldwide by aiding allergists to expand the scope of their practice and support them with evidence, data, and experience from leading groups from around the globe.This statement of the Drug Hypersensitivity Committee of the World Allergy Organization (WAO) aims to be a comprehensive practical guide on the technical aspects of implementing acute-onset intravenous hypersensitivity delabeling and RDD for a wide range of drugs. Thus, the manuscript does not only focus on clinical pathways. Instead, it also provides guidance on topics usually left unaddressed, namely, internal validation, continuous quality improvement, creating a healthy multidisciplinary environment, and redesigning care (including a specific supplemental section on a real-life example of how to design a dedicated space that can combine basic and complex diagnostic and therapeutic techniques in allergy).
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- 2022
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19. CD4+CCR6+ T cells dominate the BCG-induced transcriptional signature
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Akul Singhania, Paige Dubelko, Rebecca Kuan, William D. Chronister, Kaylin Muskat, Jyotirmoy Das, Elizabeth J. Phillips, Simon A. Mallal, Grégory Seumois, Pandurangan Vijayanand, Alessandro Sette, Maria Lerm, Bjoern Peters, and Cecilia Lindestam Arlehamn
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BCG ,tuberculosis ,T cell ,Adaptive immunity ,vaccine ,transcriptomics ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: The century-old Mycobacterium bovis Bacillus Calmette-Guerin (BCG) remains the only licensed vaccine against tuberculosis (TB). Despite this, there is still a lot to learn about the immune response induced by BCG, both in terms of phenotype and specificity. Methods: We investigated immune responses in adult individuals pre and 8 months post BCG vaccination. We specifically determined changes in gene expression, cell subset composition, DNA methylome, and the TCR repertoire induced in PBMCs and CD4 memory T cells associated with antigen stimulation by either BCG or a Mycobacterium tuberculosis (Mtb)-derived peptide pool. Findings: Following BCG vaccination, we observed increased frequencies of CCR6+ CD4 T cells, which includes both Th1* (CXCR3+CCR6+) and Th17 subsets, and mucosal associated invariant T cells (MAITs). A large number of immune response genes and pathways were upregulated post BCG vaccination with similar patterns observed in both PBMCs and memory CD4 T cells, thus suggesting a substantial role for CD4 T cells in the cellular response to BCG. These upregulated genes and associated pathways were also reflected in the DNA methylome. We described both qualitative and quantitative changes in the BCG-specific TCR repertoire post vaccination, and importantly found evidence for similar TCR repertoires across different subjects. Interpretation: The immune signatures defined herein can be used to track and further characterize immune responses induced by BCG, and can serve as reference for benchmarking novel vaccination strategies.
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- 2021
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20. Visual Genomics Analysis Studio as a Tool to Analyze Multiomic Data
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Rebecca J. Hertzman, Pooja Deshpande, Shay Leary, Yueran Li, Ramesh Ram, Abha Chopra, Don Cooper, Mark Watson, Amy M. Palubinsky, Simon Mallal, Andrew Gibson, and Elizabeth J. Phillips
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bioinformatics ,heterogeneity ,immunogenomics ,single-cell TCR sequencing ,single-cell RNA sequencing ,single-cell CITE-seq ,Genetics ,QH426-470 - Abstract
Type B adverse drug reactions (ADRs) are iatrogenic immune-mediated syndromes with mechanistic etiologies that remain incompletely understood. Some of the most severe ADRs, including delayed drug hypersensitivity reactions, are T-cell mediated, restricted by specific human leukocyte antigen risk alleles and sometimes by public or oligoclonal T-cell receptors (TCRs), central to the immunopathogenesis of tissue-damaging response. However, the specific cellular signatures of effector, regulatory, and accessory immune populations that mediate disease, define reaction phenotype, and determine severity have not been defined. Recent development of single-cell platforms bringing together advances in genomics and immunology provides the tools to simultaneously examine the full transcriptome, TCRs, and surface protein markers of highly heterogeneous immune cell populations at the site of the pathological response at a single-cell level. However, the requirement for advanced bioinformatics expertise and computational hardware and software has often limited the ability of investigators with the understanding of diseases and biological models to exploit these new approaches. Here we describe the features and use of a state-of-the-art, fully integrated application for analysis and visualization of multiomic single-cell data called Visual Genomics Analysis Studio (VGAS). This unique user-friendly, Windows-based graphical user interface is specifically designed to enable investigators to interrogate their own data. While VGAS also includes tools for sequence alignment and identification of associations with host or organism genetic polymorphisms, in this review we focus on its application for analysis of single-cell TCR–RNA–Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE)-seq, enabling holistic cellular characterization by unbiased transcriptome and select surface proteome. Critically, VGAS does not require user-directed coding or access to high-performance computers, instead incorporating performance-optimized hidden code to provide application-based fast and intuitive tools for data analyses and production of high-resolution publication-ready graphics on standard specification laptops. Specifically, it allows analyses of comprehensive single-cell TCR sequencing (scTCR-seq) data, detailing (i) functional pairings of α–β heterodimer TCRs, (ii) one-click histograms to display entropy and gene rearrangements, and (iii) Circos and Sankey plots to visualize clonality and dominance. For unbiased single-cell RNA sequencing (scRNA-seq) analyses, users extract cell transcriptome signatures according to global structure via principal component analysis, t-distributed stochastic neighborhood embedding, or uniform manifold approximation and projection plots, with overlay of scTCR-seq enabling identification and selection of the immunodominant TCR-expressing populations. Further integration with similar sequence-based detection of surface protein markers using oligo-labeled antibodies (CITE-seq) provides comparative understanding of surface protein expression, with differential gene or protein analyses visualized using volcano plot or heatmap functions. These data can be compared to reference cell atlases or suitable controls to reveal discrete disease-specific subsets, from epithelial to tissue-resident memory T-cells, and activation status, from senescence through exhaustion, with more finite transcript expression displayed as violin and box plots. Importantly, guided tutorial videos are available, as are regular application updates based on the latest advances in bioinformatics and user feedback.
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- 2021
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21. High-throughput framework for genetic analyses of adverse drug reactions using electronic health records.
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Neil S Zheng, Cosby A Stone, Lan Jiang, Christian M Shaffer, V Eric Kerchberger, Cecilia P Chung, QiPing Feng, Nancy J Cox, C Michael Stein, Dan M Roden, Joshua C Denny, Elizabeth J Phillips, and Wei-Qi Wei
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Genetics ,QH426-470 - Abstract
Understanding the contribution of genetic variation to drug response can improve the delivery of precision medicine. However, genome-wide association studies (GWAS) for drug response are uncommon and are often hindered by small sample sizes. We present a high-throughput framework to efficiently identify eligible patients for genetic studies of adverse drug reactions (ADRs) using "drug allergy" labels from electronic health records (EHRs). As a proof-of-concept, we conducted GWAS for ADRs to 14 common drug/drug groups with 81,739 individuals from Vanderbilt University Medical Center's BioVU DNA Biobank. We identified 7 genetic loci associated with ADRs at P < 5 × 10-8, including known genetic associations such as CYP2D6 and OPRM1 for CYP2D6-metabolized opioid ADR. Additional expression quantitative trait loci and phenome-wide association analyses added evidence to the observed associations. Our high-throughput framework is both scalable and portable, enabling impactful pharmacogenomic research to improve precision medicine.
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- 2021
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22. Genomic Risk Factors Driving Immune-Mediated Delayed Drug Hypersensitivity Reactions
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Yueran Li, Pooja Deshpande, Rebecca J. Hertzman, Amy M. Palubinsky, Andrew Gibson, and Elizabeth J. Phillips
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delayed hypersensitivity ,human leukocyte antigen ,T-cell receptor ,endoplasmic reticulum aminopeptidase ,genetic risk ,immune checkpoint ,Genetics ,QH426-470 - Abstract
Adverse drug reactions (ADRs) remain associated with significant mortality. Delayed hypersensitivity reactions (DHRs) that occur greater than 6 h following drug administration are T-cell mediated with many severe DHRs now associated with human leukocyte antigen (HLA) risk alleles, opening pathways for clinical prediction and prevention. However, incomplete negative predictive value (NPV), low positive predictive value (PPV), and a large number needed to test (NNT) to prevent one case have practically prevented large-scale and cost-effective screening implementation. Additional factors outside of HLA contributing to risk of severe T-cell-mediated DHRs include variation in drug metabolism, T-cell receptor (TCR) specificity, and, most recently, HLA-presented immunopeptidome-processing efficiencies via endoplasmic reticulum aminopeptidase (ERAP). Active research continues toward identification of other highly polymorphic factors likely to impose risk. These include those previously associated with T-cell-mediated HLA-associated infectious or auto-immune disease such as Killer cell immunoglobulin-like receptors (KIR), epistatically linked with HLA class I to regulate NK- and T-cell-mediated cytotoxic degranulation, and co-inhibitory signaling pathways for which therapeutic blockade in cancer immunotherapy is now associated with an increased incidence of DHRs. As such, the field now recognizes that susceptibility is not simply a static product of genetics but that individuals may experience dynamic risk, skewed toward immune activation through therapeutic interventions and epigenetic modifications driven by ecological exposures. This review provides an updated overview of current and proposed genetic factors thought to predispose risk for severe T-cell-mediated DHRs.
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- 2021
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23. An Updated Review of the Diagnostic Methods in Delayed Drug Hypersensitivity
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Ana Copaescu, Andrew Gibson, Yueran Li, Jason A. Trubiano, and Elizabeth J. Phillips
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delayed hypersensitivity reaction ,drug allergy ,severe cutaneous adverse reactions ,T cells ,skin testing ,lymphocyte transformation test (LTT) ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Delayed drug hypersensitivity reactions are clinically diverse reactions that vary from isolated benign skin conditions that remit quickly with no or symptomatic treatment, drug discontinuation or even continued drug treatment, to the other extreme of severe cutaneous adverse reactions (SCARs) that are associated with presumed life-long memory T-cell responses, significant acute and long-term morbidity and mortality. Diagnostic “in clinic” approaches to delayed hypersensitivity reactions have included patch testing (PT), delayed intradermal testing (IDT) and drug challenges for milder reactions. Patch and IDT are, in general, performed no sooner than 4–6 weeks after resolution of the acute reaction at the maximum non-irritating concentrations. Functional in vitro and ex vivo assays have largely remained the province of research laboratories and include lymphocyte transformation test (LTT) and cytokine release enzyme linked ImmunoSpot (ELISpot) assay, an emerging diagnostic tool which uses cytokine release, typically IFN-γ, after the patient’s peripheral blood mononuclear cells are stimulated with the suspected drug(s). Genetic markers such as human leukocyte antigen have shown recent promise for both pre-prescription screening as well as pre-emptive and diagnostic testing strategies.
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- 2021
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24. KIR Allelic Variation and the Remission of Atopic Dermatitis Over Time
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David J. Margolis, Nandita Mitra, Ole J. Hoffstad, Abha Chopra, and Elizabeth J. Phillips
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Immunology ,Immunology and Allergy ,General Medicine - Abstract
Atopic dermatitis (AD) is a common chronic skin disease. Although generally thought to be a disease of T-cell dysregulation, recent studies have suggested that immune dysregulation of NK cells is also important. Killer cell Ig-like receptors (KIRs) are involved with NK cell regulation. The Pediatric Eczema Elective Registry is a U.S. nationwide longitudinal cohort with up to 10 y of follow-up in which 655 children had DNA available for full allelic KIR sequencing. Every 6 mo, AD activity was reported by Pediatric Eczema Elective Registry children. Using generalized estimating equations, we evaluated the association of KIR allelic variation in concert with known HLA binding ligands and whether the child reported AD in “remission” (no skin lesions and not using AD medication). KIR2DS4*001:01 (odds ratio 0.53, 95% CI [0.32, 0.88]) and KIR2DL4*001:02 (0.54, [0.33, 0.89]) in the presence of C*04:01 had the largest effect on decreasing the likelihood of AD remission. The haplotype KIR 2DL4*001:02 ∼ 2DS4*001:01 ∼ 3DL2*002:01 (0.77, [0.60, 0.99]) was also associated with a decreased likelihood of AD remission. Our findings add to the general body of evidence of a growing literature on the importance of NK cells with respect to the immunopathogenesis and natural history of AD.
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- 2023
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25. Drug allergy: A 2022 practice parameter update
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David A, Khan, Aleena, Banerji, Kimberly G, Blumenthal, Elizabeth J, Phillips, Roland, Solensky, Andrew A, White, Jonathan A, Bernstein, Derek K, Chu, Anne K, Ellis, David B K, Golden, Matthew J, Greenhawt, Caroline C, Horner, Dennis, Ledford, Jay A, Lieberman, John, Oppenheimer, Matthew A, Rank, Marcus S, Shaker, David R, Stukus, Dana, Wallace, Julie, Wang, and Marcus, Shaker
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Immunology ,Immunology and Allergy - Published
- 2022
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26. Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles
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Rebecca Pavlos, Elizabeth J. McKinnon, David A. Ostrov, Bjoern Peters, Soren Buus, David Koelle, Abha Chopra, Ryan Schutte, Craig Rive, Alec Redwood, Susana Restrepo, Austin Bracey, Thomas Kaever, Paisley Myers, Ellen Speers, Stacy A. Malaker, Jeffrey Shabanowitz, Yuan Jing, Silvana Gaudieri, Donald F. Hunt, Mary Carrington, David W. Haas, Simon Mallal, and Elizabeth J. Phillips
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Medicine ,Science - Abstract
Abstract Genes of the human leukocyte antigen (HLA) system encode cell-surface proteins involved in regulation of immune responses, and the way drugs interact with the HLA peptide binding groove is important in the immunopathogenesis of T-cell mediated drug hypersensitivity syndromes. Nevirapine (NVP), is an HIV-1 antiretroviral with treatment-limiting hypersensitivity reactions (HSRs) associated with multiple class I and II HLA alleles. Here we utilize a novel analytical approach to explore these multi-allelic associations by systematically examining HLA molecules for similarities in peptide binding specificities and binding pocket structure. We demonstrate that primary predisposition to cutaneous NVP HSR, seen across ancestral groups, can be attributed to a cluster of HLA-C alleles sharing a common binding groove F pocket with HLA-C*04:01. An independent association with a group of class II alleles which share the HLA-DRB1-P4 pocket is also observed. In contrast, NVP HSR protection is afforded by a cluster of HLA-B alleles defined by a characteristic peptide binding groove B pocket. The results suggest drug-specific interactions within the antigen binding cleft can be shared across HLA molecules with similar binding pockets. We thereby provide an explanation for multiple HLA associations with cutaneous NVP HSR and advance insight into its pathogenic mechanisms.
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- 2017
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27. Adverse Events and Safety of SARS-CoV-2 Vaccines: What’s New and What’s Next
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Kristen B, Corey, Grace, Koo, and Elizabeth J, Phillips
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Vaccines ,COVID-19 Vaccines ,SARS-CoV-2 ,Vaccination ,COVID-19 ,Humans ,Immunology and Allergy ,United States - Abstract
Just over 1 year following rollout of the first vaccines for coronavirus disease 2019, 572 million doses have been administered in the United States. Compared with the number of vaccines administered, adverse effects such as anaphylaxis have been rare, and seemingly, the more serious the effect, the rarer the occurrence. Despite these adverse effects, there are few, if any, true contraindications to coronavirus disease 2019 vaccination and most individuals recover without further sequelae. This review provides guidance for the allergist/immunologist regarding appropriate next steps based on patient's known allergy history or adverse reaction after receipt of coronavirus disease 2019 vaccine to assist in safe global immunization.
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- 2022
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28. A low‐cost, sensitive and specific <scp>PCR</scp> ‐based tool for rapid clinical detection of HLA‐B*35 alleles associated with delayed drug hypersensitivity reactions
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Yueran Li, Pooja Deshpande, Abha Chopra, Linda Choo, Andrew Gibson, and Elizabeth J. Phillips
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Drug Hypersensitivity ,HLA-B Antigens ,Immunology ,Genetics ,Humans ,Immunology and Allergy ,DNA ,Real-Time Polymerase Chain Reaction ,Alleles - Abstract
HLA (HLA) alleles are risk factors for CD8+ T-cell-mediated drug hypersensitivity reactions. However, as most HLA associations are incompletely predictive and/or involve risk alleles at low frequency, costly sequence-based typing can elude an economically productive cost: benefit ratio for clinical validation studies and diagnostic and/or preventative screening. Hence rapid and low-cost detection assays are now required, both for single alleles but also across risk loci associated with broader multi-disease risk; exemplified by associations with diverse alleles in HLA-B*35, including HLA-B*35:01 and green tea- or co-trimoxazole-induced liver injury. Here, we developed a cost-effective ($10USD) qPCR assay for rapid (2.5 h) clinical detection of HLA-B*35 alleles. The assay was validated using 430 DNA samples with previous American society for histocompatibility and immunogenetics-accredited sequence-based high-resolution HLA typing, positively detecting all HLA-B*35 allelic variants in our cohort, and as expected by primer design, the six samples that expressed low-frequency B*78:01. The assay did not result in positive detection for any negative control allele. With expected detection of B*35 and B*78, our assay sensitivity (95% CI, 95.07%-100.00%) and specificity (95% CI, 98.97%-100.00%) of 100% using as low as 10 ng of DNA provides a reliable HLA-B*35 screening tool for clinical validation and HLA-risk-based prevention and diagnostics.
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- 2022
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29. ISIDLB1801 - A multi-omic single-cell atlas of Stevens-Johnson syndrome and toxic epidermal necrolysis
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Elizabeth J. Phillips
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- 2023
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30. Genome-wide association study of platelet factor 4/heparin antibodies in heparin-induced thrombocytopenia
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Jason B. Giles, Heidi E. Steiner, Jerome Rollin, Christian M. Shaffer, Yukihide Momozawa, Taisei Mushiroda, Chihiro Inai, Kathleen Selleng, Thomas Thiele, Claire Pouplard, Nancy M. Heddle, Michiaki Kubo, Elise C. Miller, Kiana L. Martinez, Elizabeth J. Phillips, Theodore E. Warkentin, Yves Gruel, Andreas Greinacher, Dan M. Roden, and Jason H. Karnes
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Heparin ,Humans ,Immunologic Factors ,Hematology ,Platelet Factor 4 ,Thrombocytopenia ,Antibodies ,Genome-Wide Association Study - Abstract
Heparin, a widely used anticoagulant, carries the risk of an antibody-mediated adverse drug reaction, heparin-induced thrombocytopenia (HIT). A subset of heparin-treated patients produces detectable levels of antibodies against complexes of heparin bound to circulating platelet factor 4 (PF4). Using a genome-wide association study (GWAS) approach, we aimed to identify genetic variants associated with anti-PF4/heparin antibodies that account for the variable antibody response seen in HIT. We performed a GWAS on anti-PF4/heparin antibody levels determined via polyclonal enzyme-linked immunosorbent assays. Our discovery cohort (n = 4237) and replication cohort (n = 807) constituted patients with European ancestry and clinical suspicion of HIT, with cases confirmed via functional assay. Genome-wide significance was considered at α = 5 × 10−8. No variants were significantly associated with anti-PF4/heparin antibody levels in the discovery cohort at a genome-wide significant level. Secondary GWAS analyses included the identification of variants with suggestive associations in the discovery cohort (α = 1 × 10−4). The top variant in both cohorts was rs1555175145 (discovery β = −0.112 [0.018], P = 2.50 × 10−5; replication β = −0.104 [0.051], P = .041). In gene set enrichment analysis, 3 gene sets reached false discovery rate-adjusted significance (q < 0.05) in both discovery and replication cohorts: “Leukocyte Transendothelial Migration,” “Innate Immune Response,” and “Lyase Activity.” Our results indicate that genomic variation is not significantly associated with anti-PF4/heparin antibody levels. Given our power to identify variants with moderate frequencies and effect sizes, this evidence suggests genetic variation is not a primary driver of variable antibody response in heparin-treated patients with European ancestry.
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- 2022
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31. Practical Implementation of Genetics: New Concepts in Immunogenomics to Predict, Prevent, and Diagnose Drug Hypersensitivity
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Pooja Deshpande, Yueran Li, Michael Thorne, Amy M. Palubinsky, Elizabeth J. Phillips, and Andrew Gibson
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Drug Hypersensitivity ,HLA Antigens ,Receptors, Antigen, T-Cell ,Humans ,Immunology and Allergy ,CD8-Positive T-Lymphocytes ,Article - Abstract
Delayed drug hypersensitivities are CD8+ T-cell mediated reactions associated with up to 50% mortality. Human leukocyte antigen (HLA) alleles are known to predispose disease, specific to drug, reaction, and patient ethnicity, with pre-treatment screening recommended for a handful of the strongest associations to identify and prevent drug use in high-risk patients. However, an incomplete predictive value implicates other HLA-imposed risk factors, and low carriage of many identified HLA-risk alleles combined with the high cost of sequence-based typing has limited economic viability for similar recommendation of screening across drugs and healthcare systems. To mitigate, an expanding armoury of low-cost polymerase chain reaction-based screens is being developed, and HLA-imposed risk factors are being discovered. These include (1) polymorphic variants of metabolic and endoplasmic reticulum aminopeptidase enzymes, towards multi-allelic screening with increased predictivity, (2) regulation by immune checkpoint inhibitors, enabling de-tolerised animal models of human disease, and (3) immunodominant T-cell receptors (TCR) on clonally expanded CD8+ T-cells. For the latter, HLA-risk restricted TCR provides immunogenomic strategies and samples from a single patient to identify novel HLA-risk associations in underserved minority populations, tissue-relevant effector biomarkers towards earlier diagnosis and treatment, and HLA-TCR-presented immunogenic structures to aid future drug development.
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- 2022
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32. Garcinia cambogia, Either Alone or in Combination With Green Tea, Causes Moderate to Severe Liver Injury
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Hans L. Tillmann, Herbert L. Bonkovsky, David E. Kleiner, Jose Serrano, Leonard B. Seeff, Jay H. Hoofnagle, Ikhlas A. Khan, Jawad Ahmad, Elizabeth J. Phillips, Francisco Durazo, Robert J. Fontana, Victor J. Navarro, Christopher Koh, Jiezhun Gu, Huiman X. Barnhart, Andrew Stolz, Don C. Rockey, Yi-Ju Li, and Raj Vuppalanchi
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Moderate to severe ,medicine.medical_specialty ,Garcinia cambogia ,medicine.medical_treatment ,Liver transplantation ,Gastroenterology ,Article ,chemistry.chemical_compound ,Weight loss ,Internal medicine ,Humans ,Medicine ,Liver injury ,Tea ,Hepatology ,business.industry ,Jaundice ,medicine.disease ,Green tea ,Hydroxycitric acid ,chemistry ,HLA-B Antigens ,Dietary Supplements ,Chemical and Drug Induced Liver Injury ,medicine.symptom ,business - Abstract
BACKGROUND: Garcinia cambogia, either alone or with green tea, is commonly promoted for weight loss. Sporadic cases of liver failure from G. cambogia have been reported, but its role in liver injury is controversial. METHODS: Among 1418 patients enrolled in the Drug-Induced Liver Injury Network (DILIN) from 2004 to 2018, we identified 22 cases (adjudicated with high confidence) of liver injury from G. cambogia either alone (n=5) or in combination with green tea (n=16) or Ashwagandha (n=1). Control groups consisted of 57 patients with liver injury from herbal and dietary supplements (HDS) containing green tea without G. cambogia and 103 patients from other HDS. RESULTS: Patients who took G. cambogia were between 17 to 54 years, with liver injury arising 13 to 223 days (median = 51) after the start. One patient died, one required liver transplantation, and 91% were hospitalized. The liver injury was hepatocellular with jaundice. Although the peak values of aminotransferases were significantly higher (2001 ± 1386 U/L) in G. cambogia group (p
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- 2022
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33. Distinct CD3+CD14+T Cell-Monocytes are dynamic complexes that harbor HIV and are increased with glucose intolerance
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Celestine N. Wanjalla, Joshua Simmons, Jared Oakes, Xiuqi Zhang, Cindy Nochowicz, Stephen Priest, Samuel S. Bailin, Christopher M. Warren, Mona Mashayekhi, Heather K. Beasley, Jian Wang, Leslie Meenderink, Quanhu Sheng, Joey Stolze, Rama Gangula, Abha Chopra, Curtis L. Gabriel, Tecla Temu, Suman Pakala, Erin M. Wilfong, Sara Gianella, Elizabeth J. Phillips, David G. Harrison, Antentor Hinton, Spyros A. Kalams, Simon A. Mallal, and John R. Koethe
- Subjects
Article - Abstract
SummaryPersistent systemic inflammation in persons with HIV (PWH) is accompanied by an increased risk of metabolic disease. Yet, changes in the innate and adaptive immune system in PWH who develop metabolic disease remain poorly defined. Using unbiased approaches, we show that PWH with prediabetes/diabetes have a significantly higher proportion of circulating CD14+monocytes complexed to T cells. The complexed CD3+T cells and CD14+monocytes demonstrate functional immune synapses, increased expression of proinflammatory cytokines, and greater glucose utilization. Furthermore, these complexes harbor more latent HIV DNA compared to CD14+monocytes or CD4+T cells. Our results demonstrate that circulating CD3+CD14+T cell-monocyte pairs represent functional dynamic cellular interactions that likely contribute to inflammation and, in light of their increased proportion, may have a role in metabolic disease pathogenesis. These findings provide an incentive for future studies to investigate T cell-monocyte immune complexes as mechanistic in HIV cure and diseases of aging.Graphical AbstractHighlightsPersons with HIV and diabetes have increased circulating CD3+CD14+T cell-monocyte complexes.CD3+CD14+T cell-monocytes are a heterogenous group of functional and dynamic complexes.We can detect HIV in T cell-monocyte complexes.The proportion of CD3+CD14+T cell-monocyte complexes is positively associated with blood glucose levels and negatively with plasma IL-10 and CD4+T regulatory cells.
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- 2023
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34. Human Leukocyte Antigen Genotyping of Idiopathic Subglottic Stenosis
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Matthew L. Rohlfing, Alexander T. Hillel, Elizabeth Wohler, Nara Sobreira, Elizabeth J Phillips, Simon A. Mallal, and Alexander Gelbard
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Otorhinolaryngology - Published
- 2023
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35. A case of coronavirus disease 2019 messenger RNA vaccine tolerance and immune response despite presence of anti-polyethylene glycol antibodies
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Kristen B. Corey, Grace Koo, Cosby A. Stone, Susan F. Kroop, William H. Fissell, Steven Kozlowski, Zhao-Hua Zhou, and Elizabeth J. Phillips
- Subjects
Pulmonary and Respiratory Medicine ,Vaccines, Synthetic ,COVID-19 Vaccines ,Immunology ,Immunity ,COVID-19 ,Humans ,Immunology and Allergy ,RNA, Messenger ,mRNA Vaccines ,Antibodies ,Polyethylene Glycols - Published
- 2022
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36. Immediate and Delayed Hypersensitivity Reactions to Beta-Lactam Antibiotics
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Elizabeth J. Phillips, Allison E. Norton, and Ellen Minaldi
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Drug ,medicine.medical_specialty ,Allergy ,business.industry ,medicine.drug_class ,media_common.quotation_subject ,Drug allergy ,Antibiotics ,Patch test ,General Medicine ,medicine.disease ,Dermatology ,Rash ,Penicillin ,Delayed hypersensitivity ,Immunology and Allergy ,Medicine ,medicine.symptom ,business ,medicine.drug ,media_common - Abstract
Beta-lactam antibiotics are the most commonly reported drug allergy in adults and children. More than 95% of those with reported allergy labels to beta lactams are not confirmed when subjected to allergy testing. Beta lactam antibiotics are associated with a wide spectrum of immediate and delayed drug hypersensitivity reactions. The latency period to symptoms and clinical presentation aids in the causality assessment. Risk stratification based on diagnosis and timing then allows for appropriate management and evaluation. Skin prick testing, intradermal testing and oral challenge are well established for evaluation of immediate reactions. Delayed intradermal testing, patch testing and oral challenge can also be considered for evaluation of mild to moderate delayed reactions. Cross-reactivity between beta-lactams appears to be driven most commonly by a shared R1 side-chain. Standardized algorithms, protocols and pathways are needed for widespread implementation of a pragmatic and effective approach to patients reporting beta lactam allergy.
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- 2021
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37. An academic hospital experience screening mRNA COVID-19 vaccine risk using patient allergy history
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Lori A. Rolando, Matthew S. Krantz, Patrick J. Staso, Ana E. Nobis, Elizabeth J. Phillips, Kristen B. Corey, Grace Koo, Cosby A. Stone, Emily M. Campbell, and Sara Bluestein
- Subjects
medicine.medical_specialty ,2019-20 coronavirus outbreak ,COVID-19 Vaccines ,Coronavirus disease 2019 (COVID-19) ,SARS-CoV-2 ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,MEDLINE ,COVID-19 ,Clinical Communications ,Hospital experience ,Hospitals ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,RNA, Messenger ,Allergy history ,business ,Anaphylaxis - Published
- 2021
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38. Supportive care in the acute phase of Stevens-Johnson syndrome and toxic epidermal necrolysis
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Neil H. Shear, P. Joly, Alain Brassard, P. Wolkenstein, Kanade Shinkai, L. S. Vidal, K. Zaghbib, C. Salavastru, J. Newman, A. Colin, J.N. Bouwes Bavinck, N. Hama, Arturo R. Dominguez, J. T. Schulz, Roni P. Dodiuk-Gad, Lars E. French, Emanual Michael Maverakis, D. Meyersburg, Chia-Yu Chu, K. Pallesen, M. C. Brüggen, R. Le Floch, Robert G. Micheletti, E. Bequignon, B. Milpied, Tetsuo Shiohara, Benjamin H. Kaffenberger, Paolo Romanelli, C. Bodemer, S. L. Chua, Arash Mostaghimi, E. Howard, Elizabeth J. Phillips, Annamari Ranki, Mirjam Nägeli, R. Sheridan, J. Gueudry, S. Ingen-Housz-Oro, Barbara Horváth, A. Toussi, Amy S. Paller, Jonathan Cotliar, Anette Bygum, Danielle M. Tartar, N. de Prost, Robert S. Stern, S. Walsh, Wen-Hung Chung, Scott Worswick, Riichiro Abe, M. Arden-Jones, Megan H. Noe, C. Moss, George-Sorin Tiplica, E. Brezinova, B. Didona, S. T. Le, Hôpital Henri Mondor, Epidémiosurveillance de protozooses à transmission alimentaire et vectorielle (ESCAPE), Université de Reims Champagne-Ardenne (URCA)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU)-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Epidemiology in Dermatology and Evaluation in Therapeutics (EpiDermE), Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), HUS Inflammation Center, Department of Dermatology, Allergology and Venereology, Helsinki University Hospital Area, University of Helsinki, Translational Immunology Groningen (TRIGR), Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Université de Rouen Normandie (UNIROUEN), and Normandie Université (NU)-Normandie Université (NU)-Université de Reims Champagne-Ardenne (URCA)
- Subjects
Adult ,medicine.medical_specialty ,Consensus ,education ,MEDLINE ,Dermatology ,Phase (combat) ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,Humans ,Medicine ,Infection control ,Child ,Retrospective Studies ,computer.programming_language ,Modalities ,business.industry ,Research ,Stevens johnson ,16. Peace & justice ,medicine.disease ,Toxic epidermal necrolysis ,3. Good health ,Stevens-Johnson Syndrome ,3121 General medicine, internal medicine and other clinical medicine ,Family medicine ,business ,computer ,[SDV.MHEP.DERM]Life Sciences [q-bio]/Human health and pathology/Dermatology ,Delphi - Abstract
Background Supportive care is the cornerstone of management of adult and paediatric Stevens-Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN). However, consensus on the modalities of supportive care is lacking.Objectives Our aim in this international multicentric Delphi exercise was to establish a multidisciplinary expert consensus to standardize recommendations regarding supportive care in the acute phase of SJS/TEN.Methods Participants were sent a survey via the online tool SurveyMonkey, consisting of 103 statements organized into 11 topics: multidisciplinary team composition, suspect drug management, infection prevention, fluid resuscitation and prevention of hypothermia, nutritional support, pain and psychological distress management, management of acute respiratory failure, local skincare, ophthalmological management, management of other mucosa, and additional measures. Participants evaluated the level of appropriateness of each statement on a scale of 1 (extremely inappropriate) to 9 (extremely appropriate). The results were analysed according to the RAND/UCLA Appropriateness Method.Results Forty-five participants from 13 countries (on three continents) participated. After the first round, a consensus was obtained for 82.5% of the 103 initially proposed statements. After the second round, a final consensus was obtained for 102 statements.Conclusions We have reached an international Delphi-based consensus on best supportive care practice for SJS/TEN. Our expert consensus should help guide physicians in treating patients with SJS/TEN and thereby improve short-term prognosis and the risk of sequelae.
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- 2021
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39. Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level
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Abha Chopra, Simon Mallal, Suman B. Pakala, Suman R. Das, Jodi L. Bubenik, Benjamin B Lindsey, Mina John, Maurice S. Swanson, Matthew Parker, Alexander J Keeley, Covid Genomics Uk, Eric Alves, T I de Silva, Ian James, Shay Leary, Elizabeth J. Phillips, David A. Ostrov, Sarah Rowland-Jones, Alessandro Sette, John Sidney, and Silvana Gaudieri
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Microbiology (medical) ,Genetics ,Mutation ,Sequence analysis ,Immunology ,RNA ,Biology ,medicine.disease_cause ,Genome ,Deep sequencing ,Virus ,Open reading frame ,Infectious Diseases ,medicine ,Immunology and Allergy ,skin and connective tissue diseases ,Homologous recombination ,Molecular Biology - Abstract
Background: Genetic variations across the SARS-CoV-2 genome may influence transmissibility of the virus and the host’s anti-viral immune response, in turn affecting the frequency of variants over time. In this study, we examined the adjacent amino acid polymorphisms in the nucleocapsid (R203K/G204R) of SARS-CoV-2 that arose on the background of the spike D614G change and describe how strains harboring these changes became dominant circulating strains globally. Methods: Deep-sequencing data of SARS-CoV-2 from public databases and from clinical samples were analyzed to identify and map genetic variants and sub-genomic RNA transcripts across the genome. Results: Sequence analysis suggests that the 3 adjacent nucleotide changes that result in the K203/R204 variant have arisen by homologous recombination from the core sequence of the leader transcription-regulating sequence (TRS) rather than by stepwise mutation. The resulting sequence changes generate a novel sub-genomic RNA transcript for the C-terminal dimerization domain of nucleocapsid. Deep-sequencing data from 981 clinical samples confirmed the presence of the novel TRS-CS-dimerization domain RNA in individuals with the K203/R204 variant. Quantification of sub-genomic RNA indicates that viruses with the K203/R204 variant may also have increased expression of sub-genomic RNA from other open reading frames. Conclusions: The finding that homologous recombination from the TRS may have occurred since the introduction of SARS-CoV-2 in humans, resulting in both coding changes and novel sub-genomic RNA transcripts, suggests this as a mechanism for diversification and adaptation within its new host.
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- 2021
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40. DrugWAS: Drug‐wide Association Studies for COVID‐19 Drug Repurposing
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Josh F. Peterson, Patrick J. Staso, Katherine N. Cahill, Cosmin Adrian Bejan, Elizabeth J. Phillips, and Leena Choi
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medicine.medical_specialty ,Flaxseed extract ,Lower risk ,Article ,law.invention ,Cohort Studies ,Pneumococcal Vaccines ,Randomized controlled trial ,law ,Internal medicine ,Product Surveillance, Postmarketing ,medicine ,Humans ,Pharmacology (medical) ,Retrospective Studies ,Pharmacology ,business.industry ,Drug Repositioning ,COVID-19 ,Retrospective cohort study ,Odds ratio ,Intensive care unit ,Pneumococcal polysaccharide vaccine ,COVID-19 Drug Treatment ,business ,Cohort study - Abstract
IMPORTANCE: There is an unprecedented need to rapidly identify safe and effective treatments for the novel coronavirus disease 2019 (COVID-19). OBJECTIVE: To systematically investigate if any of the available drugs in Electronic Health Record (EHR), including prescription drugs and dietary supplements, can be repurposed as potential treatment for COVID-19. DESIGN, SETTING, AND PARTICIPANTS: Based on a retrospective cohort analysis of EHR data, drug-wide association studies (DrugWAS) were performed on COVID-19 patients at Vanderbilt University Medical Center (VUMC). For each drug study, multivariable logistic regression with overlap weighting using propensity score was applied to estimate the effect of drug exposure on COVID-19 disease outcomes. EXPOSURES: Patient exposure to a drug during 1-year prior to the pandemic and COVID-19 diagnosis was chosen as exposure of interest. Natural language processing was employed to extract drug information from clinical notes, in addition to the prescription drug data available in structured format. MAIN OUTCOMES AND MEASURES: All-cause of death was selected as primary outcome. Hospitalization, admission to the intensive care unit (ICU), and need for mechanical ventilation were identified as secondary outcomes. RESULTS: The study included 7,768 COVID-19 patients, of which 509 (6.55%) were hospitalized, 82 (1.06%) were admitted to ICU, 64 (0.82%) received mechanical ventilation, and 90 (1.16%) died. Overall, 15 drugs were significantly associated with decreased COVID-19 severity. Previous exposure to either Streptococcus pneumoniae vaccines (adjusted odds ratio [OR], 0.38; 95% CI, 0.14–0.98), diphtheria toxoid vaccine (OR, 0.39; 95% CI, 0.15–0.98), and tetanus toxoid vaccine (OR, 0.39; 95% CI, 0.15–0.98) were significantly associated with a decreased risk of death (primary outcome). Secondary analyses identified several other significant associations showing lower risk for COVID-19 outcomes: 2 vaccines (acellular pertussis, Streptococcus pneumoniae), 3 dietary supplements (turmeric extract, flaxseed extract, omega-3 fatty acids), methylprednisolone acetate, pseudoephedrine, ethinyl estradiol, estradiol, ibuprofen, and fluticasone. CONCLUSIONS AND RELEVANCE: This cohort study leveraged EHR data to identify a list of drugs that could be repurposed to improve COVID-19 outcomes. Further randomized clinical trials are needed to investigate the efficacy of the proposed drugs.
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- 2021
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41. Hidden Dangers: Recognizing Excipients as Potential Causes of Drug and Vaccine Hypersensitivity Reactions
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Santiago Quirce, Elizabeth J. Phillips, Matthew S. Krantz, María Luisa Caballero, and Cosby A. Stone
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Hypersensitivity, Immediate ,Drug ,Allergy ,media_common.quotation_subject ,Galactose-alpha-1,3-galactose ,Excipient ,Article ,Polyethylene Glycols ,Drug Hypersensitivity ,Excipients ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Hypersensitivity ,medicine ,Humans ,Immunology and Allergy ,030212 general & internal medicine ,Anaphylaxis ,media_common ,Active ingredient ,Vaccines ,business.industry ,medicine.disease ,Hypersensitivity reaction ,030228 respiratory system ,chemistry ,Delayed hypersensitivity ,Immunology ,business ,medicine.drug - Abstract
Excipients are necessary as a support to the active ingredients in drugs, vaccines and other products and they contribute to their stability, preservation, pharmacokinetics, bioavailability, appearance and acceptability. For both drugs and vaccines these are rare reactions however for vaccines they are the primary cause of immediate hypersensitivity. Suspicion for these “hidden dangers” should be high in particular when anaphylaxis has occurred in association with multiple chemically distinct drugs. Common excipients implicated include gelatin, carboxymethylcellulose (CMC), polyethylene glycols (PEG) and products related to PEG in immediate hypersensitivity reactions (IHRs); and propylene glycol (PG), in delayed hypersensitivity reactions (DHRs). Complete evaluation of a suspected excipient reaction requires detailed information from the product monograph and package insert to identify all ingredients that are present and to understand the function and structure for these chemicals. This knowledge helps develop a management plan that may include allergy testing to identify the implicated component and to give patients detailed information for future avoidance of relevant foods, drugs and vaccines. Excipient reactions should be particularly considered for specific classes of drugs where they have been commonly found to be the culprit (e.g. corticosteroids, injectable hormones, immunotherapies, monoclonal antibodies, and vaccines). We provide a review of the evidence-based literature outlining epidemiology and mechanisms of excipient reactions and provide strategies for heightened recognition and allergy testing.
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- 2021
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42. Abstract 019: T Cell Recognition Of Isolevuglandin-adducted Proteins In Hypertension Is Mhc Class 1-restricted
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Nathaniel C Bloodworth, Wei Chen, Natalia R Ruggeri Barbaro, Mingfang Ao, Amy M Palubinsky, Richard T O'Niel, Elizabeth J Phillips, Rocco Moretti, Sean S Davies, Simon A Mallal, Jens Meiler, and David G Harrison
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Internal Medicine - Abstract
Introduction: Isolevuglandins (isoLGs) are peroxidized lipids that covalently bond lysine residues to modify self-antigens in hypertension. We hypothesized that isoLG-adduction restricts peptide presentation to specific class 1 major histocompatibility complexes (MHC) in mice and humans. Methods and Results: We developed 2 mouse strains expressing either his-tagged class 1 MHC-I H-2D b or H-2K b with truncated membrane binding domains. Shed MHC-I from cultured splenoctyes was adsorbed onto nickel-agarose beads and used to stimulate T cells. We found that CD8+ T cell proliferation is restricted to H-2D b and not H-2K b (Fig 1A) and occurs only if both T-cells and soluble H-2D b are from hypertensive (angiotensin II-treated) mice. Proliferation was blocked if donors received an isoLG-scavenger or by an isoLG specific antibody added during the proliferation assay (Fig 1B). Fluorescence resonance energy transfer (FRET) demonstrated that isoLG-adducts associate with MHC-1 H-2D b and not H-2K b . We transfected HLA-null K562 cells with 18 common human HLA subtypes, and induced isoLG formation with tert-butyl hydroperoxide. Using FRET we identified human HLAs that are high, intermediate and low presenters of isoLG adducts (Fig 1C). Unique modeling software identified candidate peptides and showed that structural characteristics of H-2D b cause lysines at positions 4-7 to project from the MHC groove and present isoLGs (Fig 1D-E). Conclusion: IsoLG adduct presentation is MHC-1 restricted. This may explain differences in the degree of inflammation and end-organ damage observed between populations with hypertension and provides a possible new approach to personalized care.
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- 2022
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43. Advances in immunoglobulin E mediated antibiotic allergy
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Christine R.F. Rukasin, Elizabeth J. Phillips, and Cosby A. Stone
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Adult ,Drug Hypersensitivity ,Pediatrics, Perinatology and Child Health ,Humans ,Immunoglobulin E ,Child ,Anaphylaxis ,Skin Tests ,Anti-Bacterial Agents - Abstract
The purpose of this review is to identify recent advances in our understanding and management of immunoglobulin E (IgE)-mediated antibiotic allergy.Antibiotics remain a leading cause of fatal anaphylaxis reported to the FDA. However, recent advances have defined the features of adult and pediatric patients without true IgE-mediated allergy or any mechanism of anaphylaxis when tested. This has created opportunities to use direct challenges to disprove these allergies at the point-of-care and improves antibiotic stewardship. Additional advances have highlighted cross-reactive structural considerations within classes of drugs, in particular the R1 side-chain of cephalosporins, that appear to drive true immune-mediated cross-reactivity. Further advances in risk-based approaches to skin testing, phenotyping, and re-exposure challenges are needed to standardize antibiotic allergy evaluation.Recent advances in defining true IgE-mediated drug allergy have helped to identify patients unlikely to be skin-test positive. In turn, this has identified patients who can skip skin testing and proceed to direct ingestion challenge using history risk-based approaches. The ability to identify the small number of patients with true IgE-mediated allergy and study their natural history over time, as well as the vast majority without true allergy will facilitate important and novel mechanistic discoveries.
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- 2022
44. Study protocol: Australasian Registry of Severe Cutaneous Adverse Reactions (AUS-SCAR)
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Fiona James, Michelle S Y Goh, Effie Mouhtouris, Sara Vogrin, Kyra Y L Chua, Natasha E Holmes, Andrew Awad, Ana-Maria Copaescu, Joseph F De Luca, Celia Zubrinich, Douglas Gin, Heather Cleland, Abby Douglas, Johannes S Kern, Constance H Katelaris, Francis Thien, Sara Barnes, James Yun, Winnie Tong, William B Smith, Andrew Carr, Tara Anderson, Amy Legg, Jack Bourke, Laura K Mackay, Ar Kar Aung, Elizabeth J Phillips, and Jason Trubiano
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Adult ,Adolescent ,Stevens-Johnson Syndrome ,Eosinophilia ,Australia ,Leukocytes, Mononuclear ,Quality of Life ,Humans ,General Medicine ,Prospective Studies ,Registries - Abstract
IntroductionSevere cutaneous adverse reactions (SCAR) are a group of T cell-mediated hypersensitivities associated with significant morbidity, mortality and hospital costs. Clinical phenotypes include Stevens-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN), drug reaction with eosinophilia and systemic symptoms (DRESS) and acute generalised exanthematous pustulosis (AGEP). In this Australasian, multicentre, prospective registry, we plan to examine the clinical presentation, drug causality, genomic predictors, potential diagnostic approaches, treatments and long-term outcomes of SCAR in Australia and New Zealand.Methods and analysisAdult and adolescent patients with SCAR including SJS, TEN, DRESS, AGEP and another T cell-mediated hypersensitivity, generalised bullous fixed drug eruption, will be prospectively recruited. A waiver of consent has been granted for some sites to retrospectively include cases which result in early mortality. DNA will be collected for all prospective cases. Blood, blister fluid and skin biopsy sampling is optional and subject to patient consent and site capacity. To develop culprit drug identification and prevention, genomic testing will be performed to confirm human leukocyte antigen (HLA) type and ex vivo testing will be performed via interferon-γ release enzyme linked immunospot assay using collected peripheral blood mononuclear cells. The long-term outcomes of SCAR will be investigated with a 12-month quality of life survey and examination of prescribing and mortality data.Ethics and disseminationThis study was reviewed and approved by the Austin Health Human Research Ethics Committee (HREC/50791/Austin-19). Results will be published in peer-reviewed journals and presented at relevant conferences.Trial registration numberAustralian New Zealand Clinical Trials Registry (ACTRN12619000241134).
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- 2022
45. COVID‐19 vaccine anaphylaxis: PEG or not?
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Matthew S. Krantz, Cosby A. Stone, Yiwei Liu, and Elizabeth J. Phillips
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2019-20 coronavirus outbreak ,COVID-19 Vaccines ,Coronavirus disease 2019 (COVID-19) ,SARS-CoV-2 ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Immunology ,COVID-19 ,Immunoglobulin E ,medicine.disease ,Virology ,Polyethylene Glycols ,Correspondence ,PEG ratio ,medicine ,Humans ,Immunology and Allergy ,business ,Anaphylaxis - Published
- 2021
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46. HLA‐B*35:01 and Green Tea–Induced Liver Injury
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Herbert L. Bonkovsky, Jose Serrano, Ikhlas A. Khan, Raj Vuppalanchi, Hans L. Tillmann, Jawad Ahmad, Christopher Koh, Francisco Durazo, Robert J. Fontana, Andrew Stolz, Huiman X. Barnhart, David E. Kleiner, Don C. Rockey, Yi-Ju Li, Elizabeth J. Phillips, Jiezhun Gu, Leonard B. Seeff, Jay H. Hoofnagle, and Victor J. Navarro
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Adult ,Male ,0301 basic medicine ,medicine.medical_specialty ,Drug-Related Side Effects and Adverse Reactions ,medicine.medical_treatment ,Population ,Human leukocyte antigen ,Liver transplantation ,Severity of Illness Index ,Gastroenterology ,Article ,Pathogenesis ,03 medical and health sciences ,0302 clinical medicine ,Liver Function Tests ,Internal medicine ,medicine ,Humans ,Prospective Studies ,education ,Transaminases ,Liver injury ,education.field_of_study ,Tea ,Hepatology ,business.industry ,Incidence ,medicine.disease ,United States ,Confidence interval ,HLA-B ,Liver Transplantation ,Causality ,030104 developmental biology ,HLA-B Antigens ,Dietary Supplements ,Alkaline phosphatase ,Female ,030211 gastroenterology & hepatology ,Chemical and Drug Induced Liver Injury ,business - Abstract
BACKGROUND AND AIMS Herbal supplements, and particularly multi-ingredient products, have become increasingly common causes of acute liver injury. Green tea is a frequent component in implicated products, but its role in liver injury is controversial. The aim of this study was to better characterize the clinical features, outcomes, and pathogenesis of green tea-associated liver injury. APPROACH AND RESULTS Among 1,414 patients enrolled in the U.S. Drug-Induced Liver Injury Network who underwent formal causality assessment, 40 cases (3%) were attributed to green tea, 202 to dietary supplements without green tea, and 1,142 to conventional drugs. The clinical features of green tea cases and representation of human leukocyte antigen (HLA) class I and II alleles in cases and control were analyzed in detail. Patients with green tea-associated liver injury ranged in age from 17 to 69 years (median = 40) and developed symptoms 15-448 days (median = 72) after starting the implicated agent. The liver injury was typically hepatocellular (95%) with marked serum aminotransferase elevations and only modest increases in alkaline phosphatase. Most patients were jaundiced (83%) and symptomatic (88%). The course was judged as severe in 14 patients (35%), necessitating liver transplantation in 3 (8%), but rarely resulting in chronic injury (3%). In three instances, injury recurred upon re-exposure to green tea with similar clinical features, but shorter time to onset. HLA typing revealed a high prevalence of HLA-B*35:01, found in 72% (95% confidence interval [CI], 58-87) of green tea cases, but only 15% (95% CI, 10-20) caused by other supplements and 12% (95% CI, 10-14) attributed to drugs, the latter rate being similar to population controls (11%; 95% CI, 10.5-11.5). CONCLUSIONS Green tea-related liver injury has distinctive clinical features and close association with HLA-B*35:01, suggesting that it is idiosyncratic and immune mediated.
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- 2021
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47. DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions
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Elizabeth J. Phillips, Scott D. Nelson, C. Michael Stein, Nancy J. Cox, Patrick Wu, Joshua C. Denny, Dan M. Roden, Juan Zhao, Qingxia Chen, Eric A Larson, QiPing Feng, Cosby A. Stone, Bingshan Li, and Wei-Qi Wei
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Drug ,medicine.medical_specialty ,Drug-Related Side Effects and Adverse Reactions ,Knowledge Bases ,media_common.quotation_subject ,Health Informatics ,Research and Applications ,03 medical and health sciences ,0302 clinical medicine ,Electronic health record ,Pharmacovigilance ,Electronic Health Records ,Humans ,Medicine ,Drug Interactions ,Medical physics ,030212 general & internal medicine ,030304 developmental biology ,media_common ,0303 health sciences ,business.industry ,Medical record ,Software package ,Predictive value ,Subject-matter expert ,Pharmaceutical Preparations ,business - Abstract
Objective We developed and evaluated Drug-Drug Interaction Wide Association Study (DDIWAS). This novel method detects potential drug-drug interactions (DDIs) by leveraging data from the electronic health record (EHR) allergy list. Materials and Methods To identify potential DDIs, DDIWAS scans for drug pairs that are frequently documented together on the allergy list. Using deidentified medical records, we tested 616 drugs for potential DDIs with simvastatin (a common lipid-lowering drug) and amlodipine (a common blood-pressure lowering drug). We evaluated the performance to rediscover known DDIs using existing knowledge bases and domain expert review. To validate potential novel DDIs, we manually reviewed patient charts and searched the literature. Results DDIWAS replicated 34 known DDIs. The positive predictive value to detect known DDIs was 0.85 and 0.86 for simvastatin and amlodipine, respectively. DDIWAS also discovered potential novel interactions between simvastatin-hydrochlorothiazide, amlodipine-omeprazole, and amlodipine-valacyclovir. A software package to conduct DDIWAS is publicly available. Conclusions In this proof-of-concept study, we demonstrate the value of incorporating information mined from existing allergy lists to detect DDIs in a real-world clinical setting. Since allergy lists are routinely collected in EHRs, DDIWAS has the potential to detect and validate DDI signals across institutions.
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- 2021
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48. Drug Allergy Practice Parameter Updates to Incorporate Into Your Clinical Practice
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Aleena Banerji, Roland Solensky, Elizabeth J. Phillips, and David A. Khan
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Immunology and Allergy - Abstract
The drug allergy practice parameter was developed to provide guidance on the diagnosis and management of drug hypersensitivity reactions. It was last updated in 2010. With the growth of research and evidence-based data since then, experts came together to update the practice parameter with a focus on sections that the work group deemed to have significant changes (or were not addressed) in the previous practice parameter. This review is a focused update on aspects of the practice parameter deemed to have the greatest impact on clinical practice and includes significant updates on diagnosis of antibiotic allergy including penicillin, cephalosporin, sulfonamide, fluoroquinolone, and macrolide allergies. Other topics include the evolution in our management approach to patients with aspirin/nonsteroidal anti-inflammatory drug allergy, diagnostic testing for delayed drug hypersensitivity and allergy to chemotherapeutics and biologics, and the key consensus-based statements for clinical practice. Specifically, the updated practice parameter helps allergists understand the place of 1- or 2-step drug challenges that are valuable tools often without the need for skin testing in many clinical situations. A proactive approach to delabeling penicillin allergy as well as unnecessary avoidance of safe antibiotic alternatives for patients with proven penicillin allergy is emphasized. New guidance is provided on management of patients with different phenotypes of aspirin and nonsteroidal anti-inflammatory drug hypersensitivity reactions. Approaches to delayed drug hypersensitivity and use of delayed intradermal and patch testing for specific phenotypes are reviewed. Lastly, practical approaches to management of patients with reactions to chemotherapeutics and biologics are discussed.
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- 2022
49. Where to place etanercept and combination treatment for Stevens-Johnson syndrome and toxic epidermal necrolysis?
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Eric M. Mukherjee and Elizabeth J. Phillips
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Pulmonary and Respiratory Medicine ,Stevens-Johnson Syndrome ,Immunology ,Immunology and Allergy ,Humans ,Etanercept - Published
- 2022
50. Drug reaction with eosinophilia and systemic symptoms in patients hospitalized with COVID-19: a case series from a large US healthcare system
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Bethany Cucka, Bianca Biglione, Li Zhou, Elizabeth J. Phillips, Fatima Bassir, Upeka Samarakoon, Renajd Rrapi, Sidharth Chand, Liqin Wang, Santiago Alvarez-Arango, Kimberly G. Blumenthal, and Daniela Kroshinsky
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Drug Hypersensitivity Syndrome ,Eosinophilia ,COVID-19 ,Humans ,Dermatology ,Delivery of Health Care - Published
- 2022
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