1. Single-cell RNA sequencing and analysis of rodent blood stage Plasmodium
- Author
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Elisa Jentho, António G.G. Sousa, Susana Ramos, Temitope W. Ademolue, João Sobral, João Costa, Denise Brito, Marta Manteiro, Ricardo B. Leite, Jingtao Lilue, and Miguel P. Soares
- Subjects
Bioinformatics ,Sequence Analysis ,Single Cell ,Flow Cytometry/Mass Cytometry ,Health Sciences ,Sequencing ,Science (General) ,Q1-390 - Abstract
Summary: Bulk RNA sequencing of Plasmodium spp., the causative parasite of malaria, fails to discriminate developmental-stage-specific gene regulation. Here, we provide a protocol that uses single-cell RNA sequencing of FACS-sorted Plasmodium-chabaudi-chabaudi-AS-infected red blood cells (iRBCs) to characterize developmental-stage-specific modulation of gene expression during malaria blood stage. We describe steps for infecting mice, monitoring disease progression, preparing iRBCs, and single-cell sequencing iRBCs. We then detail procedures for analyzing scRNA-seq data.For complete details on the use and execution of this protocol, please refer to Ramos et al.1 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
- Published
- 2023
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