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4 results on '"Eli R. Kallison"'

1. The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA

Author

Hartnell College Genomics Group, Paulina Andrade, Lisbeth Arreola, Melissa Belnas, Estefania Bland, Araceli Castillo, Omar Cisneros, Valentin Contreras, Celeste Diaz, Kevin T. Do, Carlos Donate, Estevan Espinoza, Nathan Frater, Garry G. Gabriel, Eric A. Gomez, Gino F. Gonzalez, Myrka Gonzalez, Paola Guido, Dylan Guidotti, Mishell Guzman Espinoza, Ivan Haro, Javier Hernandez Lopez, Caden E. Hernandez, Karina Hernandez, Jazmin A. Hernandez-Salazar, Jeffery R. Hughey, Héctor Jácome-Sáenz, Luis A. Jimenez, Eli R. Kallison, Mylisa S. King, Luis J. Lazaro, Feifei Zhai Lorenzo, Isaac Madrigal, Savannah Madruga, Adrian J. Maldonado, Alexander M. Medina, Marcela Mendez-Molina, Ali Mendez, David Murillo Martinez, David Orozco, Juan Orozco, Ulises Ortiz, Jennifer M. Pantoja, Alejandra N. Ponce, Angel R. Ramirez, Israel Rangel, Eliza Rojas, Adriana Roque, Beatriz Rosas, Colt Rubbo, Justin A. Saldana, Elian Sanchez, Alicia Steinhardt, Maria O. Taveras Dina, Judith Torres, Silvestre Valdez-Mata, Valeria Vargas, Paola Vazquez, Michelle M. Vazquez, Irene Vidales, Frances L. Wong, Christian S. Zagal, Santiago Zamora, and Jesus Zepeda Amador

Subjects
batillaria attramentaria, cerithioidea, elkhorn slough, invasive species, mitogenome, Genetics, QH426-470
Abstract

Genomic analysis of the invasive marine snail Batillaria attramentaria from Elkhorn Slough, Moss Landing, California, USA using 150 bp paired-end Illumina sequences resulted in the assembly of its complete mitogenome. The mitogenome is 16,095 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank Accession MN557850). Gene content and organization of B. attramentaria are identical to the Turritellidae and Pachychilidae. The phylogenetic analysis of B. attramentaria resolves it in a fully supported clade with these same two families in the superfamily Cerithioidea. Nucleotide BLAST searches of the Elkhorn Slough cox1 gene of B. attramentaria yielded identical sequences from invasive populations from California and British Columbia, and native populations from northeastern and central Japan. These data show that mitogenome sequencing is a useful tool for studying the classification and phylogenetic history Cerithioidea.

Published
2019
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2. The complete mitochondrial and plastid genomes of Corallina chilensis (Corallinaceae, Rhodophyta) from Tomales Bay, California, USA

Author

Ivan A. Alejo, Teresa E. Aleman, Karina Almanza, William Alonso, Maria Guadalupe Altamirano Manriquez, Tyler Armbrister, Yoshio Astudillo, Lyric Batistiana, Jonathan S. Blas Guido, Danilo E. Bustamante, Martha S. Calderon, Jovany D. Camacho Gonzalez, Suiry Cardoso, Jose Castro, Maria N. Chombo Garcia, Lissa P. Colin, Karina G. Cortina, Andrea Delgado, Daniel Espinoza Castro, Isabel Estrada, Eduardo Felix, Stephanie Felix, Martin Flores, Suzanne Frausto, Eli D. Garcia, Malia Garcia, Gabriela Gasca, Daniela Gomez, Christian Gonzalez Balcazar, Bianca G. Miramontes, Victor Gonzalez, Clarissa D. Guzman, Edgard C. Guzman, Timothy B. Hanneman, Julissa Hernandez, Jeffery R. Hughey, Victoria N. Hutchins, Eli R. Kallison, Sebastian Lepe, Serena M. Lopez, Feifei Zhai Lorenzo, Evelyn Macias Reyes, Fernando Madrigal, Nayeli G. Madrigal-Gonzalez, Rodolfo Mandujano, Ricardo Manzo, Paloma L. Martinez, Sergio Martinez, Bianey A. Medina, Mario Mendez, Jose J. Mendoza Contreras, Ana I. Meza, Kevin Miller, Anna Morales, Eduardo Munoz, Johnna M. Myers, Priya-Anjali Patel, Dominic Pina Montes, Alejandra N. Ponce, Alicia E. Ramirez, Elias Rico, Aide Rodriguez, Jasmine Rodriguez, Angel Ruiz, Andrea Saldana, Rosa A. Sanchez, Jessica D. Santana, Francisco D. Solano, Alejandra Soto Trujillo, Sarai J. Soto, Alicia Steinhardt, Melisa Talavera, Monik M. Tapia, Odalis Tapia, Maria O. Taveras Dina, Brenda J. Torresillas, Clarissa Vazquez-Ramos, Frances L. Wong, and Hartnell College Genomics Group

Subjects
corallina, corallina chilensis, corallinaceae, mitogenome, plastid genome, Genetics, QH426-470
Abstract

Genomic analysis of the marine alga Corallina chilensis from Tomales Bay, California, USA, resulted in the assembly of its complete mitogenome (GenBank accession number MK598844) and plastid genome (GenBank MK598845). The mitogenome is 25,895 bp in length and contains 50 genes. The plastid genome is 178,350 bp and contains 233 genes. The organellar genomes share a high-level of gene synteny to other Corallinales. Comparison of rbcL and cox1 gene sequences of C. chilensis from Tomales Bay reveals it is identical to three specimens from British Columbia, Canada and very similar to a specimen of C. chilensis from southern California. These genetic data confirm that C. chilensis is distributed in Pacific North America.

Published
2019
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3. Analysis of the complete organellar genomes of the rockweed Fucus spiralis (Fucaceae, Phaeophyceae) supports its infraspecific recognition as Fucus vesiculosus var. spiralis

Author

Alejandra Alvarez, Juan Anaya, Bibiana Arellano, Austin Bartlebaugh, Michael C. Capurro, Adriana Carrillo, Isaiah R. Chacon, Lizbeth Cordova, Bethany Corral, Melina DaSilva, Giselle Del Valle, Alexis Diaz, Isaac Diaz, Carlos Donate, Isabella Fusco, Brian Garcia, Janette Garcia, Christian Godoy, Victor Gonzalez, Megan Hertzog, Nicholas Horton, Jeffery R. Hughey, Eli R. Kallison, Rafael Lopez, Jennifer Martinez, Rene Martinez, Kianna Mendez, Marie Pacheco, Maria Ramirez, David M. Ramirez, Jennifer M. Rios, Franca Rossi, Jorge Rua, Alyssa Sanchez, Daniela Sanchez, Maria Sanchez, Karla Santos, Rosaura Sierra, Daniel Soto, Alicia Steinhardt, Jesus Tavarez, Mark Tupas, Rolando T. Valdez, Christian Vargas, Rudy Vargas, Frances L. Wong, Adrian Zamora, and Hartnell College Genomics Group

Subjects
california, fucus spiralis, fucus vesiculosus, mitogenome, plastid genome, Genetics, QH426-470
Abstract

Fucus spiralis L. is a broadly distributed monoecious intertidal seaweed. The specific status of F. spiralis however is debatable. Here, we contribute to the bioinformatics and systematics of F. spiralis by analysing the complete mitochondrial and plastid genomes of a specimen from California, U.S.A. The F. spiralis mitogenome is 36,396 base pairs (bp) in length and contains 67 genes, and the plastid genome is 125,066 bp in length and contains 171 genes. The F. spiralis genomes are 99.7% and 99.8% similar in nucleotide sequence to F. vesiculosus, and support the revised classification of F. spiralis to Fucus vesiculosus var. spiralis.

Published
2018
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4. The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA

Author

Israel Rangel, David Murillo Martinez, Alejandra N. Ponce, Michelle M Vazquez, Jeffery R. Hughey, Silvestre Valdez-Mata, Ulises Ortiz, Estevan Espinoza, Ivan Haro, Valentin Contreras, Eli R. Kallison, Paola Vazquez, Kevin T Do, Justin A Saldana, Estefania Bland, Colt Rubbo, Jennifer M Pantoja, Myrka Gonzalez, Feifei Zhai Lorenzo, Santiago Zamora, Adrian J. Maldonado, Beatriz Rosas, Juan Orozco, Angel R Ramirez, Javier Hernandez Lopez, Valeria Vargas, Paulina Andrade, Alicia Steinhardt, Mylisa S King, Jazmin A Hernandez-Salazar, Araceli Castillo, Gino F Gonzalez, Marcela Mendez-Molina, Savannah Madruga, Luis A Jimenez, Nathan Frater, Omar Cisneros, Jesus Zepeda Amador, Lisbeth Arreola, Adriana Roque, Elian Sanchez, Carlos Donate, Paola Guido, Luis J Lazaro, Irene Vidales, Eliza Rojas, Karina Hernandez, Ali Mendez, Celeste Diaz, Judith Torres, Melissa Belnas, Christian S Zagal, Caden E Hernandez, Maria O. Taveras Dina, Eric A Gomez, Isaac Madrigal, Garry G Gabriel, David Orozco, Frances L. Wong, Héctor Jácome-Sáenz, Alexander M Medina, Mishell Guzman Espinoza, and Dylan Guidotti

Subjects
0106 biological sciences, 0301 basic medicine, Batillaria attramentaria, Zoology, Cerithioidea, Snail, 010603 evolutionary biology, 01 natural sciences, Invasive species, invasive species, 03 medical and health sciences, biology.animal, Gastropoda, Genetics, Molecular Biology, Mitogenome Announcement, biology, mitogenome, Elkhorn Slough, biology.organism_classification, Moss, 030104 developmental biology, Batillariidae, Research Article
Abstract

Genomic analysis of the invasive marine snail Batillaria attramentaria from Elkhorn Slough, Moss Landing, California, USA using 150 bp paired-end Illumina sequences resulted in the assembly of its complete mitogenome. The mitogenome is 16,095 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank Accession MN557850). Gene content and organization of B. attramentaria are identical to the Turritellidae and Pachychilidae. The phylogenetic analysis of B. attramentaria resolves it in a fully supported clade with these same two families in the superfamily Cerithioidea. Nucleotide BLAST searches of the Elkhorn Slough cox1 gene of B. attramentaria yielded identical sequences from invasive populations from California and British Columbia, and native populations from northeastern and central Japan. These data show that mitogenome sequencing is a useful tool for studying the classification and phylogenetic history Cerithioidea.

Published
2019

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