20 results on '"Elaine J. Lewis"'
Search Results
2. Retrofitting massively parallel sequencing (MPS) for HLA-DQA1 and polymarker (PM) in forensic casework
- Author
-
Daniele Podini, Elaine J Lewis, Audrey Hoyle, Erin Weaver, Robert Lagacé, and Fabio Oldoni
- Subjects
GYPA ,Massive parallel sequencing ,Genotype ,Sequence analysis ,Computer science ,High-Throughput Nucleotide Sequencing ,Computational biology ,DNA Fingerprinting ,Polymerase Chain Reaction ,HLA-DQ alpha-Chains ,Pathology and Forensic Medicine ,DNA profiling ,Allele-specific oligonucleotide ,Humans ,Typing ,Gene ,Alleles - Abstract
Genotype profiling has played a major role in forensics for decades. The technology for detection and discrimination has advanced substantially, from serology to DNA sequence analysis. Currently, there may be situations where there is a need for re-analysis of forensic DNA data that was produced using methodology that is no longer available. An example of this is the allele-specific oligonucleotide hybridization assays used in the 1990s. In the study presented herein, we have developed a multiplex system combining PCR and massively parallel sequencing (MPS) technologies to identify DNA polymorphisms. Our results are consistent with those found in the widely utilized AmpliType PM + DQA1 Amplification and Typing Kit originally marketed by Perkin Elmer. During the course of our studies, it became apparent that paralogous genes for two of the loci, GYPA and HBG2 (formerly HBGG), could have confounded the interpretation of the original assays, and we describe the technical solutions we developed to overcome ambiguity in genotype assignment. This study results in a novel resource enabling the re-analysis of DNA profiling results produced decades past using current day technology.
- Published
- 2021
- Full Text
- View/download PDF
3. The Interaction between dHAND and Arix at the Dopamine β-Hydroxylase Promoter Region Is Independent of Direct dHAND Binding to DNA
- Author
-
Elaine J. Lewis, Jennifer L. Rychlik, and Vincent R. Gerbasi
- Subjects
Mutant ,Electrophoretic Mobility Shift Assay ,Dopamine beta-Hydroxylase ,Plasma protein binding ,Biology ,Transfection ,Biochemistry ,Basic Helix-Loop-Helix Transcription Factors ,Luciferase ,Electrophoretic mobility shift assay ,RNA, Messenger ,Promoter Regions, Genetic ,Molecular Biology ,Transcription factor ,DNA Primers ,Homeodomain Proteins ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,Promoter ,DNA ,Cell Biology ,Zebrafish Proteins ,Molecular biology ,DNA-Binding Proteins ,Homeobox ,Protein Binding ,Transcription Factors - Abstract
Dopamine beta-hydroxylase (DBH) catalyzes the production of norepinephrine, and its expression defines the noradrenergic phenotype. Transcription factors dHAND, a basic helix-loop-helix protein, and Arix/Phox2a, a homeoprotein, have been demonstrated to play a role in the differentiation and maintenance of catecholaminergic neurons. Three Arix regulatory sites have been identified in the DBH promoter proximal region, but there is no such evidence for dHAND. Cotransfection with a DBH promoter-luciferase reporter construct plus dHAND or dHAND-E12 expression plasmids did not alter luciferase activity, whereas transfection with Arix resulted in a 2.5-fold stimulation of luciferase activity. However, a 5.5-fold increase was observed when Arix and dHAND were combined, and an 8-fold level of expression was observed when Arix was transfected with a dHAND mutant lacking the basic DNA-binding domain. When the homeodomain sites in the DBH promoter proximal region were mutated, all activity was lost, demonstrating dependence upon Arix-DNA interaction for transcriptional activation. In electrophoretic mobility shift assays, the addition of dHAND decreased the amount of Arix needed to elicit a mobility shift with the DBH homeodomain sites, and the dHAND basic mutant potentiated Arix binding in a manner similar to wild-type dHAND. The dHAND-Arix complex was dissociated upon the addition of an unlabeled competitor containing a homeodomain, but not upon the addition of a competitor containing E-boxes. Arix coprecipitated with antisera directed against recombinant dHAND, demonstrating direct protein-protein interactions. These results indicate that the activation of the DBH promoter by Arix is potentiated by dHAND via a mechanism independent of a direct interaction of dHAND with DNA.
- Published
- 2003
- Full Text
- View/download PDF
4. [Untitled]
- Author
-
Svetlana Lutsenko, Elaine J. Lewis, and Vincent R. Gerbasi
- Subjects
medicine.medical_specialty ,biology ,Adrenal gland ,Nervous tissue ,ATP7A ,Wild type ,Chromogranin A ,General Medicine ,Biochemistry ,Cellular and Molecular Neuroscience ,Norepinephrine ,medicine.anatomical_structure ,Epinephrine ,Endocrinology ,Dopamine ,Internal medicine ,medicine ,biology.protein ,medicine.drug - Abstract
The copper-transporting ATPases Atp7A and Atp7B play a major role in controlling intracellular copper levels. In addition, they are believed to deliver copper to the copper-requiring proteins destined for the secretory vesicles. One cuproprotein, dopamine β-hydroxylase (DBH) functions in the biosynthesis of norepinephrine and epinephrine, neurohormones in endocrine and nervous tissue. To evaluate the consequences of loss of Atp7B on the function of DBH, the level of proteins in adrenal gland were compared between normal mice and mice containing a null mutation in the ATP7B gene. The levels of DBH, as well as another vesicular protein, chromogranin A, are reduced in the ATP7B−/− mice. In addition to the lower level of enzyme, the products of DBH catalytic activity, norepinephrine and epinephrine, are also decreased. Although these changes are a consequence of ATP7B gene function, Atp7B mRNA is not normally expressed in the adrenal gland. Instead, Atp7A mRNA is present. The levels of copper and DBH RNA within adrenals of the ATP7B−/− mice are not different from the wild type. The results of these experiments suggest that copper-requiring enzymes are affected by a loss of ATP7B even in tissue not normally expressing this protein. Therefore the multisystemic effects observed in Wilson disease, the human disorder characterized by mutation in ATP7B, may be a secondary consequence of the major accumulation of copper in liver.
- Published
- 2003
- Full Text
- View/download PDF
5. Paired-Like Homeodomain Proteins Phox2a/Arix and Phox2b/NBPhox Have Similar Genetic Organization and Independently Regulate Dopamine β-Hydroxylase Gene Transcription
- Author
-
Megumi Adachi, D.L. Browne, and Elaine J. Lewis
- Subjects
Transcription, Genetic ,Molecular Sequence Data ,Nerve Tissue Proteins ,Dopamine beta-Hydroxylase ,Biology ,Gene Expression Regulation, Enzymologic ,Mice ,Genetics ,Animals ,Humans ,Amino Acid Sequence ,Promoter Regions, Genetic ,Molecular Biology ,Transcription factor ,DNA Primers ,Homeodomain Proteins ,Base Sequence ,Sequence Homology, Amino Acid ,Chromosome Mapping ,Dopamine beta-monooxygenase ,Exons ,Cell Biology ,General Medicine ,Phenotype ,Introns ,Rats ,Homeobox ,Transcription Factors - Abstract
The homeodomain transcription factors Arix/Phox2a and NBPhox/Phox2b play a role in the specification of the noradrenergic phenotype of central and peripheral neurons. To better understand the functions of these two factors, we have compared the genetic organization, chromosomal location, and transcriptional regulatory properties of Arix and NBPhox. The gene structure is very similar, with each gene containing three exons and two introns, extending a total of approximately 5 kb. Arix and NBPhox are unlinked in human and mouse genomes. NBPhox is located on human Chromosome 4p12 and mouse Chromosome 5, while Arix is located on human Chromosome 11q13 and mouse Chromosome 7. Both proteins bind to three sites in the promoter proximal region of the rat dopamine beta-hydroxylase gene (DBH). In vitro, Arix and NBPhox form DNA-independent multimers and exhibit cooperative binding to the DB1 regulatory element, which contains two homeodomain recognition sites. Both proteins regulate transcription from the rat DBH promoter, and transcription is synergistically increased in the presence of the protein kinase A catalytic subunit (PKA) plus either Arix or NBPhox. The transcription factors exhibit similar concentration-dependent efficacies, and when they are coexpressed, transcription is stimulated to a value approximately equal to that seen with either factor alone. The N-terminal segment of Arix is essential for transcriptional regulatory activity, and this region bears 50% identity with NBPhox, suggesting a similar mechanism of transcriptional activation of the DBH gene. We conclude from this study that Arix and NBPhox exhibit indistinguishable and independent transcriptional regulatory properties on the DBH promoter.
- Published
- 2000
- Full Text
- View/download PDF
6. The Homeodomain Protein Arix Promotes Protein Kinase A-dependent Activation of the Dopamine β-Hydroxylase Promoter through Multiple Elements and Interaction with the Coactivator cAMP-response Element-binding Protein-binding Protein
- Author
-
Megumi Adachi, Douglas J. Swanson, and Elaine J. Lewis
- Subjects
Transcription, Genetic ,Recombinant Fusion Proteins ,EMX2 ,Dopamine beta-Hydroxylase ,Biology ,Biochemistry ,NKX2-3 ,Coactivator ,Tumor Cells, Cultured ,Animals ,Humans ,CREB-binding protein ,Promoter Regions, Genetic ,Protein kinase A ,Molecular Biology ,Transcription factor ,DNA Primers ,Homeodomain Proteins ,Base Sequence ,Nuclear Proteins ,Promoter ,Cell Biology ,CAMP response element binding protein binding ,CREB-Binding Protein ,Cyclic AMP-Dependent Protein Kinases ,Molecular biology ,Rats ,Enzyme Activation ,Trans-Activators ,biology.protein - Abstract
The differentiation and maintenance of a neurotransmitter phenotype is guided by the interaction of exogenous cues with intrinsic genetic machinery. For the noradrenergic phenotype, these influences combine to activate the expression of the catecholaminergic biosynthetic enzymes tyrosine hydroxylase and dopamine beta-hydroxylase (DBH). In this study, we evaluate the molecular mechanisms by which the transcription factor Arix/Phox2a contributes to DBH gene transcription. We have evaluated the contribution of individual homeodomain binding sites in the rat DBH promoter region and find that all are essential for both basal and cAMP-dependent protein kinase A (PKA)-stimulated transcription. Using mammalian one-hybrid and two-hybrid systems, we demonstrate that recruitment of Arix to the positions of homeodomain core recognition sites 1 and 2 at -153 to -166 of the DBH gene restores complete responsiveness of the promoter to PKA in SHSY-5Y neuroblastoma and HepG2 hepatoma cells. Intracellular Arix-Arix interactions are evident and may contribute to the interdependence of homeodomain binding sites. Analysis of functional domains of Arix reveals an N-terminal activation domain and a C-terminal repression domain. The N terminus of Arix contains an amino acid motif similar to a region in Brachyury and Pax9 transcription factors. The N-terminal activation domain of Arix interacts with the transcriptional co-activator, cAMP-response element-binding protein-binding protein, which potentiates transcription from the DBH promoter in a PKA-dependent manner. The present study supports the hypothesis that the paired-like homeodomain protein, Arix, acts as a critical phenotype-specific regulator of the DBH promoter by serving as an integrator of signal-dependent transcription activators within the network of the general transcription machinery.
- Published
- 2000
- Full Text
- View/download PDF
7. The Homeodomain Protein Arix Interacts Synergistically with Cyclic AMP to Regulate Expression of Neurotransmitter Biosynthetic Genes
- Author
-
Douglas J. Swanson, Elaine J. Lewis, and Eustacia Zellmer
- Subjects
Chloramphenicol O-Acetyltransferase ,Recombinant Fusion Proteins ,Dopamine beta-Hydroxylase ,Regulatory Sequences, Nucleic Acid ,Transfection ,CREB ,PC12 Cells ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Transcription (biology) ,Cyclic AMP ,Animals ,Humans ,Cyclic AMP Response Element-Binding Protein ,Promoter Regions, Genetic ,Protein kinase A ,Molecular Biology ,Transcription factor ,Cell Nucleus ,Homeodomain Proteins ,Neurotransmitter Agents ,Expression vector ,Base Sequence ,biology ,Tyrosine hydroxylase ,Cell Biology ,Cyclic AMP-Dependent Protein Kinases ,Molecular biology ,Rats ,Second messenger system ,biology.protein ,Signal transduction - Abstract
Transcription of the neurotransmitter biosynthetic genes tyrosine hydroxylase and dopamine beta-hydroxylase (DBH) is regulated by cell type-specific transcription factors, including the homeoprotein Arix, and second messengers, including cyclic AMP. The cis-acting regulatory sites of the DBH gene which respond to Arix and cAMP lie adjacent to each other, between bases -180 and -150, in a regulatory element named DB1. Neither Arix nor cyclic AMP analogs alone effectively stimulate transcription from the DBH promoter in non-neuronal cell cultures. However, when Arix is present together with cAMP, transcription is substantially activated. Synergistic transcription from the DBH promoter can also be elicited by cotransfection of Arix with an expression vector encoding the catalytic subunit of protein kinase A. Nuclear extracts from PC12 cells display a cAMP-induced complex binding to the DB1 element, and antisera to transcription factors CREB, CREM, Fos, and Jun indicate that these proteins, or closely related family members, interact with DB1. A dominant negative construct of CREB inhibits the response of the DBH promoter to protein kinase A. These results demonstrate a synergistic interaction between a homeodomain protein and the cAMP signal transduction system and suggest that similar interactions may regulate the tissue-specific expression of neuroendocrine genes.
- Published
- 1997
- Full Text
- View/download PDF
8. A bifunctional genetic regulatory element of the rat dopamine beta-hydroxylase gene influences cell type specificity and second messenger-mediated transcription
- Author
-
L P Asnani, Elaine J. Lewis, D Greco, and J Shaskus
- Subjects
Reporter gene ,Messenger RNA ,Transcription (biology) ,Cell culture ,Regulatory sequence ,Second messenger system ,Genetic regulatory element ,Cell Biology ,Biology ,Molecular Biology ,Biochemistry ,Molecular biology ,Gene - Abstract
Dopamine beta-hydroxylase, the enzyme which converts dopamine to norepinephrine, is expressed in a cell type-restricted pattern in neuroendocrine tissue. A segment of the rat gene containing 395 bases of 5'-flanking sequence regulates expression of a reporter gene in a cell type-selective pattern in mammalian cell cultures. Using deletion mutants of the 5'-flanking sequence, we have identified a 30-base genetic regulatory element, designated DB1, which enhances transcription from a heterologous promoter 5-20-fold in neuroendocrine cell lines. DB1-specific DNA-protein complexes are found in nuclear extracts from all cell lines examined, but the migration pattern differs between cell lines. The 5'-flanking region of the dopamine beta-hydroxylase gene is also responsive to cyclic AMP and phorbol ester treatment of SHSY-5Y neuroblastoma cells. The simultaneous presence of both effectors results in synergistic increases in DBH1 mRNA and reporter gene activity. The second messenger regulatory element was localized to the region containing the DB1 element, and reporter plasmids containing multiple copies of the DB1 element are responsive to treatment with inducers. The results of this study identify a cis-acting regulatory element which influences both cell type selectivity and second messenger responsiveness of the rat dopamine beta-hydroxylase gene.
- Published
- 1992
- Full Text
- View/download PDF
9. Soluble and membrane-bound forms of dopamine beta-hydroxylase are encoded by the same mRNA
- Author
-
L P Asnani and Elaine J. Lewis
- Subjects
Gel electrophoresis ,chemistry.chemical_classification ,Signal peptide ,Expression vector ,Cell Biology ,Biology ,Biochemistry ,Molecular biology ,Secretory Vesicle ,Amino acid ,chemistry ,Dopamine ,Complementary DNA ,medicine ,Molecular Biology ,Peptide sequence ,medicine.drug - Abstract
A full length cDNA clone for bovine dopamine beta-hydroxylase was expressed in rat pheochromocytoma PC12 cells by stable transformation of this cell line with a plasmid expression vector. The recombinant protein exhibited dopamine beta-hydroxylase enzyme activity and was found in both the soluble and membrane fractions of the secretory vesicle. Immunoprecipitation of cell extracts from recombinant cell lines with dopamine beta-hydroxylase antisera followed by fractionation on sodium dodecyl sulfate-polyacrylamide gel electrophoresis revealed two subunits, which migrated to relative molecular masses of 76 and 78 kDa. The recombinant protein co-fractionated with neurotransmitter when subcellular structures were separated by sucrose gradient density centrifugation, suggesting that the protein was routed to the secretory vesicles. Dopamine beta-hydroxylase immunoreactivity in those sucrose gradient fractions presumed to contain secretory vesicles was resistant to treatment with trypsin unless the nonionic detergent Triton X-100 was also present to disrupt membrane structure. The 76- and 78-kDa isoform were each found in both the membrane and soluble fractions of the secretory vesicle. Treatment of cultured cells with nerve growth factor or 8-(4-chlorophenylthio)-cyclic AMP alters the relative distribution of the subunits such that the 76-kDa form predominates. The subcellular distribution of a dopamine beta-hydroxylase cDNA clone lacking the first 16 nucleotide residues was also determined. The predicted amino acid sequence of the protein encoded by this cDNA would be deleted of the first 13 residues of the signal sequence, which were reported to be present in the membrane-bound form, but not the soluble form, of native dopamine beta-hydroxylase (Taljanidisz, J., Stewart, L., Smith, A. J., and Klinman, J. P. (1989) Biochemistry 28, 10054-10061). Immunoprecipitable dopamine beta-hydroxylase derived from expression of the deleted cDNA was found in both the membrane-bound and soluble fractions of the secretory vesicle. These experiments demonstrate that the membrane-bound and soluble forms of dopamine beta-hydroxylase are derived from one primary translation product, which is also sufficient to produce enzyme activity. In addition, the amino-terminal amino acids encoding residues 1-13, which compose the hydrophilic region of the signal sequence, are not necessary for the biogenesis of membrane-bound dopamine beta-hydroxylase.
- Published
- 1992
- Full Text
- View/download PDF
10. Interaction of cyclic AMP and cell-cell contact in the control of tyrosine hydroxylase RNA
- Author
-
Elaine J. Lewis and Donald Fader
- Subjects
Tyrosine 3-Monooxygenase ,Molecular Sequence Data ,Cell Count ,Biology ,Transfection ,Gene Expression Regulation, Enzymologic ,Cell Line ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Transcription (biology) ,Gene expression ,Cyclic AMP ,Animals ,RNA, Messenger ,Molecular Biology ,Neurons ,Reporter gene ,Forskolin ,Base Sequence ,Colforsin ,RNA ,Molecular biology ,Rats ,chemistry ,Cell culture ,Intracellular ,Plasmids - Abstract
The interaction between cell-cell contact and cyclic AMP-mediated control of the rat tyrosine hydroxylase (TH) gene was investigated in subclones of the PC12 rat pheochromocytoma cell line. Increasing cell culture density and elevation of intracellular cyclic AMP levels with forskolin both cause augmentation of TH RNA levels. However, the extent of increase in TH RNA following forskolin treatment is less in cultures grown at high density than those at low density, suggesting that there may be an interaction in the mechanism by which these two treatments modulate TH RNA levels. The role of cis-acting sequences in the TH gene in the induction of TH RNA by cyclic AMP and cell density was determined by the use of plasmid constructs containing the 5′-flanking sequences of the TH gene directing the transcription of the reporter gene, chloroamphenicol acetyltransferase (CAT). Using transient transfection assays in PC12 cells, we have mapped the site of cyclic AMP regulation of the TH gene to a region between −60 and −41. Stable transformants of PC12 cells which express p5TH CAT ( −773 +27 ) were isolated and the activity of CAT following treatment of cells with forskolin and growth at different cell densities was evaluated. CAT activity does not differ between cells grown at low or high density. Forskolin induces CAT activity 2–4 fold, but the extent of induction does not vary with changes in cell culture density. We conclude from these experiments that the intracellular mechanism by which increased cell-cell contact modulates TH RNA levels is not through interaction with the same genomic elements as those which regulate gene expression by cyclic AMP.
- Published
- 1990
- Full Text
- View/download PDF
11. Bovine dopamine beta-hydroxylase cDNA. Complete coding sequence and expression in mammalian cells with vaccinia virus vector
- Author
-
S Allison, Elaine J. Lewis, V Claflin, Lawrence Baizer, and D Fader
- Subjects
cDNA library ,Protein primary structure ,RNA ,Cell Biology ,Biology ,Biochemistry ,Molecular biology ,Rapid amplification of cDNA ends ,Complementary DNA ,Gene expression ,Protein biosynthesis ,Molecular Biology ,Peptide sequence - Abstract
We have isolated cDNA clones for bovine dopamine beta-hydroxylase from an adrenal medulla cDNA library and have determined the complete coding sequence. The largest cDNA clone isolated from the library is 2.4 kilobase pairs (kb) and contains an open reading frame of 1788 bases, coding for a protein of 597 amino acids and Mr = 66,803. The predicted amino acid sequence of the bovine cDNA contains 85% identity with human dopamine beta-hydroxylase (Lamouroux, A., Vingny, A., Faucon Biquet, N., Darmon, M. C., Franck, R., Henry, J.P., and Mallet, J. (1987) EMBO J. 6, 3931-3937; Kobayashi, K., Kurosawa, Y., Fujita, K., and Nagatsu, T. (1989) Nucleic Acids Res. 17, 1089-1102). Northern blot analysis reveals that the cDNA hybridizes to an mRNA of 2.4 kb present in bovine adrenal medulla, but not in kidney, heart, or liver. In addition, the cDNA hybridizes to a second RNA species of 5.5 kb, which is 4-fold less abundant than the 2.4-kb RNA. In vitro translation of a synthetic RNA transcribed from the 2.4-kb cDNA produces a 68-kDa protein, which is specifically immunoprecipitated by antiserum to bovine dopamine beta-hydroxylase. The 2.4-kb cDNA was cloned into a vaccinia virus vector, and the recombinant virus was used to infect the rat pheochromocytoma PC12 and monkey BSC-40 fibroblast cell lines. In both cell lines, infection with recombinant virus produces a protein of Mr = 75,000, which reacts with antiserum to bovine dopamine beta-hydroxylase. These results indicate that the 2.4-kb cDNA contains the genetic information necessary to code for the bovine dopamine beta-hydroxylase subunit.
- Published
- 1990
- Full Text
- View/download PDF
12. ERK1/2 is a negative regulator of homeodomain protein Arix/Phox2a
- Author
-
George Lupas, Beth A. Habecker, Elaine J. Lewis, Marlene M. Hsieh, Jennifer L. Rychlik, and Suzan Dziennis
- Subjects
MAPK/ERK pathway ,medicine.medical_specialty ,Sympathetic Nervous System ,MAP Kinase Kinase 1 ,Down-Regulation ,Dopamine beta-Hydroxylase ,Biology ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Cellular and Molecular Neuroscience ,Transactivation ,Norepinephrine ,Internal medicine ,Genes, Regulator ,medicine ,Tumor Cells, Cultured ,Humans ,RNA, Messenger ,Tyrosine ,Enzyme Inhibitors ,Phosphorylation ,Transcription factor ,Feedback, Physiological ,Homeodomain Proteins ,Neurons ,Mitogen-Activated Protein Kinase 3 ,Norepinephrine Plasma Membrane Transport Proteins ,Symporters ,Kinase ,Brain ,Cell biology ,Protein Structure, Tertiary ,Endocrinology ,Mitogen-activated protein kinase ,Phosphoprotein ,biology.protein - Abstract
Summary The homeodomain protein Arix/Phox2a plays a role in the development and maintenance of the noradrenergic cell type by regulating the transcription of genes involved in the biosynthesis and metabolism of noradrenaline. Previous work has shown that Arix/Phox2a is a phosphoprotein, and the phosphorylated form of Arix/Phox2a exhibits poorer DNA-binding activity than does the dephosphorylated form. Here, we demonstrate that Arix/Phox2a is phosphorylated by extracellular signal-related kinase (ERK)1/2 at two sites within the N-terminal transactivation domain. The phosphorylation level of Arix in cultured SH-SY5Y neuroblastoma cells is reduced when cells are treated with the mitogen activated protein kinase kinase 1 (MEK1) inhibitor UO126. Treatment of sympathetic neurons with the MEK1 inhibitor, PD98059, results in an elevation of mRNAs encoding noradrenergic proteins, dopamine s-hydroxylase (DBH) and norepinephrine transporter (NET), but not tyrosine hydroyxlase (TH). Treatment of neuroblastoma cultures with PD98059 increases the interaction of Arix with DBH and NET genes, but not the TH gene. Together, these results suggest that phosphorylation of Arix by ERK1/2 inhibits its ability to interact with target genes, and that both specificity of expression and modulation by external stimuli are monitored through the same transcription factor.
- Published
- 2005
13. Phox2 and dHAND transcription factors select shared and unique target genes in the noradrenergic cell type
- Author
-
Lee E. Eiden, Elaine J. Lewis, Marlene M. Hsieh, and Jennifer L. Rychlik
- Subjects
Cell type ,Fluorescence Polarization ,Biology ,Cellular and Molecular Neuroscience ,Neuroblastoma ,Norepinephrine ,Cell Line, Tumor ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Humans ,Secretion ,Promoter Regions, Genetic ,Gene ,Transcription factor ,Homeodomain Proteins ,Neurons ,GATA2 ,Promoter ,General Medicine ,Molecular biology ,Transport protein ,Rats ,Gene Expression Regulation ,Chromatin immunoprecipitation ,Chickens ,Protein Binding ,Transcription Factors - Abstract
The noradrenergic cell type is characterized by the expression of proteins involved in the biosynthesis, transport, and secretion of noradrenaline and is dependent on the sequential and combinatorial expression of numerous transcription factors, including Phox2a, Phox2b, dHAND, GATA2, GATA3, and MASH1. Phox2a and Phox2b transactivate the promoter of the gene encoding the noradrenergic biosynthetic enzyme, dopamine beta-hydroxylase (DBH), and dHAND potentiates the activity of Phox2a. In this study, we use chromatin immunoprecipitation assays to identify target genes of the Phox2 proteins and dHAND. All three proteins are bound to the DBH and PHOX2B promoter regions in SH-SY5Y neuroblastoma cells. The interaction between Phox2a and dHAND is analyzed by fluorescent anisotropy, which demonstrates that dHAND causes an eightfold increase in the affinity of Phox2a for its recognition sites on the DBH promoter region. The Phox2 proteins are not found on the genes encoding other noradrenergic enzymatic or transport proteins but are reciprocally bound to each other's promoters in SH-SY5Y cells. Together with Phox2a and Phox2b, dHAND is bound to the PHOX2B promoter and is also associated with the GATA2 and eHAND genes in the absence of the Phox2 proteins. These results demonstrate the direct interactions of the Phox2 and dHAND transcription factors within a noradrenergic cell type. The Phox2 proteins were found to share all target genes, whereas dHAND binds to genes independently of Phox2a.
- Published
- 2005
14. A mutation in the ATP7B copper transporter causes reduced dopamine beta-hydroxylase and norepinephrine in mouse adrenal
- Author
-
Vincent, Gerbasi, Svetlana, Lutsenko, and Elaine J, Lewis
- Subjects
Adenosine Triphosphatases ,Mice, Knockout ,Base Sequence ,Epinephrine ,Genotype ,Reverse Transcriptase Polymerase Chain Reaction ,Dopamine beta-Hydroxylase ,Mice ,Norepinephrine ,Hepatolenticular Degeneration ,Copper-Transporting ATPases ,Reference Values ,Adrenal Glands ,Animals ,Cation Transport Proteins ,DNA Primers - Abstract
The copper-transporting ATPases Atp7A and Atp7B play a major role in controlling intracellular copper levels. In addition, they are believed to deliver copper to the copper-requiring proteins destined for the secretory vesicles. One cuproprotein, dopamine beta-hydroxylase (DBH) functions in the biosynthesis of norepinephrine and epinephrine, neurohormones in endocrine and nervous tissue. To evaluate the consequences of loss of Atp7B on the function of DBH, the level of proteins in adrenal gland were compared between normal mice and mice containing a null mutation in the ATP7B gene. The levels of DBH, as well as another vesicular protein, chromogranin A, are reduced in the ATP7B -/- mice. In addition to the lower level of enzyme, the products of DBH catalytic activity, norepinephrine and epinephrine, are also decreased. Although these changes are a consequence of ATP7B gene function, Atp7B mRNA is not normally expressed in the adrenal gland. Instead, Atp7A mRNA is present. The levels of copper and DBH RNA within adrenals of the ATP7B -/- mice are not different from the wild type. The results of these experiments suggest that copper-requiring enzymes are affected by a loss of ATP7B even in tissue not normally expressing this protein. Therefore the multisystemic effects observed in Wilson disease, the human disorder characterized by mutation in ATP7B, may be a secondary consequence of the major accumulation of copper in liver.
- Published
- 2003
15. AP1 proteins mediate the cAMP response of the dopamine beta-hydroxylase gene
- Author
-
Douglas J. Swanson, Elaine J. Lewis, and Eustacia Zellmer
- Subjects
Models, Molecular ,Transcription, Genetic ,Proto-Oncogene Proteins c-jun ,Response element ,Molecular Sequence Data ,Dopamine beta-Hydroxylase ,Biology ,Transfection ,Biochemistry ,PC12 Cells ,Gene Expression Regulation, Enzymologic ,Dopamine receptor D1 ,Dopamine ,GTP-Binding Proteins ,medicine ,Cyclic AMP ,Animals ,Protein kinase A ,Promoter Regions, Genetic ,Molecular Biology ,Regulation of gene expression ,Binding Sites ,integumentary system ,Tyrosine hydroxylase ,Base Sequence ,Models, Genetic ,Dopaminergic ,Cell Biology ,Thionucleotides ,Cyclic AMP-Dependent Protein Kinases ,TATA Box ,Recombinant Proteins ,Clone Cells ,Rats ,Transcription Factor AP-1 ,AP-1 transcription factor ,Enhancer Elements, Genetic ,rap GTP-Binding Proteins ,Calcium-Calmodulin-Dependent Protein Kinases ,Proto-Oncogene Proteins c-fos ,medicine.drug ,Transcription Factors - Abstract
Neurotransmitter biosynthesis is regulated by environmental stimuli, which transmit intracellular signals via second messengers and protein kinase pathways. For the catecholamine biosynthetic enzymes, dopamine beta-hydroxylase and tyrosine hydroxylase, regulation of gene expression by cyclic AMP, diacyl glycerol, and Ca2+ leads to increased neurotransmitter biosynthesis. In this report, we demonstrate that the cAMP-mediated regulation of transcription from the dopamine beta-hydroxylase promoter is mediated by the AP1 proteins c-Fos, c-Jun, and JunD. Following treatment of cultured cells with cAMP, protein complexes bound to the dopamine beta-hydroxylase AP1/cAMP response element element change from consisting of c-Jun and JunD to include c-Fos, c-Jun, and JunD. The homeodomain protein Arix is also a component of this DNA-protein complex, binding to the adjacent homeodomain recognition sites. Transfection of a dominant negative JunD expression plasmid inhibits cAMP-mediated expression of the dopamine beta-hydroxylase promoter construct in PC12 and CATH.a cells. In addition to the role of c-Fos in regulating dopamine beta-hydroxylase gene expression in response to cAMP, a second pathway, involving Rap1/B-Raf is involved. These experiments illustrate an unusual divergence of cAMP-dependent protein kinase signaling through multiple pathways that then reconverge on a single element in the dopamine beta-hydroxylase promoter to elicit activation of gene expression.
- Published
- 1998
16. Mapping of the ARIX homeodomain gene to mouse chromosome 7 and human chromosome 11q13
- Author
-
Kenneth R. Johnson, Leslie Smith, Eugene M. Rinchik, Mathew J. Thayer, Elaine J. Lewis, Dabney K. Johnson, and Jennifer Rhodes
- Subjects
Genetic Markers ,Male ,Genetic Linkage ,Molecular Sequence Data ,Biology ,Gene mutation ,Hybrid Cells ,Regulatory Sequences, Nucleic Acid ,Mice ,Gene mapping ,Sequence Homology, Nucleic Acid ,Centromere ,Genetics ,medicine ,Animals ,Humans ,RNA, Messenger ,Cloning, Molecular ,Metaphase ,Conserved Sequence ,Crosses, Genetic ,In Situ Hybridization, Fluorescence ,DNA Primers ,Chromosome 7 (human) ,Homeodomain Proteins ,Genomic Library ,medicine.diagnostic_test ,Base Sequence ,Chromosomes, Human, Pair 11 ,Genes, Homeobox ,Chromosome ,Chromosome Mapping ,Exons ,Introns ,Rats ,Human genome ,Female ,Fluorescence in situ hybridization - Abstract
The recently described homeodomain protein ARIX is expressed specifically in noradreneric cell types of the sympathetic nervous system, brain, and adrenal medulla. ARIX interacts with regulatory elements of the genes encoding the noradrenergic biosynthetic enzymes tyrosine hydroxylase and dopamine {beta}-hydroxylase, suggesting a role for ARIX in expression of the noradrenergic phenotype. In the study described here, the mouse and human ARIX genes are mapped. Using segregation analysis of two panels of mouse backcross DNA, mouse Arix was positioned approximately 50 cM distal to the centromere of chromosome 7, near Hbb. Human ARIX was positioned through analysis of somatic cell hybrids and fluorescence in situ hybridization of human metaphase chromosomes to chromosome 7, near Hbb. Human ARIX was positioned through analysis of somatic cell hybrids and fluorescence in situ hybridization of human metaphase chromosomes to chromosome 11q13.3-q13.4. These map locations extend and further define regions of conserved synteny between mouse and human genomes and identify a new candidate gene for inherited developmental disorders linked to human 11q13.
- Published
- 1996
17. A homeodomain protein selectively expressed in noradrenergic tissue regulates transcription of neurotransmitter biosynthetic genes
- Author
-
Elaine J. Lewis, D. Greco, Eustacia Zellmer, Jennifer Rhodes, S. Cassel, and Zheng Zhang
- Subjects
Transcription, Genetic ,Tyrosine 3-Monooxygenase ,Molecular Sequence Data ,Dopamine beta-Hydroxylase ,Biology ,Norepinephrine ,Transcription (biology) ,Complementary DNA ,Tumor Cells, Cultured ,Animals ,Humans ,Amino Acid Sequence ,RNA, Messenger ,Binding site ,Enhancer ,Promoter Regions, Genetic ,Gene ,Homeodomain Proteins ,Messenger RNA ,Binding Sites ,Base Sequence ,cDNA library ,General Neuroscience ,Genes, Homeobox ,Articles ,Molecular biology ,Rats ,Genes ,Mutation ,Homeobox ,Oligonucleotide Probes - Abstract
In order to characterize the specificity of expression of the neurotransmitter biosynthetic gene dopamine beta-hydroxylase (DBH), the identification of proteins that interact with the DB1 enhancer was initiated. A homeobox-containing cDNA was isolated from a PC12 expression cDNA library screened with the DB1 enhancer. The homeodomain is a member of the paired-like class, and is encoded by several nonidentical cDNAs. The cDNAs contain the same sequence in the homeodomain and 3′ coding and noncoding sequences, but diverge in sequence 5′ to the homeodomain. This family of homeobox-containing cDNAs is named Arix. Arix mRNA transcripts are found only in noradrenergic, DBH-positive tissues, and in cell lines derived from those tissue. The DB1 enhancer contains two binding sites for the Arix homeodomain, and both sites contribute to basal activity of the DBH promoter. When introduced into tissue culture, Arix regulates the transcriptional activity from the DBH promoter, and also from the promoter of the tyrosine hydroxylase gene, encoding the initial enzyme of the catecholamine biosynthetic pathway. The pattern of expression of the Arix transcripts, the presence of the homeodomain, and the transcriptional regulatory properties suggest that this family of proteins may be involved in the specificity of expression of the catecholamine biosynthetic genes.
- Published
- 1995
18. Transcription factor AP-2 regulates expression of the dopamine beta-hydroxylase gene
- Author
-
Eustacia Zellmer, Dominique Greco, Zheng Zhang, and Elaine J. Lewis
- Subjects
Reporter gene ,Expression vector ,Binding Sites ,Base Sequence ,Transcription, Genetic ,Oligonucleotide ,Molecular Sequence Data ,Dopamine beta-Hydroxylase ,Biology ,Biochemistry ,Molecular biology ,DNA-Binding Proteins ,Cellular and Molecular Neuroscience ,Gene Expression Regulation ,Transcription Factor AP-2 ,Transcription (biology) ,Gene expression ,Tumor Cells, Cultured ,Humans ,Binding site ,Oligonucleotide Probes ,Promoter Regions, Genetic ,Transcription factor ,Gene ,Transcription Factors - Abstract
Expression of the gene encoding the neurotransmitter biosynthetic enzyme dopamine beta-hydroxylase (DBH) is regulated in a tissue-specific pattern, and transcription is influenced by environmental stimuli. Using the promoter proximal region of the rat DBH gene and nuclear extracts from SHSY-5Y neuroblastoma cells, a DNA-protein complex was identified that is competitive with oligonucleotides containing the recognition site of transcription factor AP-2. DNase footprint analysis identified an AP-2 binding site between -136 and -115 of the DBH promoter. Mutation of that AP-2 site results in a sevenfold reduction of basal reporter gene expression, but second messenger-stimulated activity is retained. Cotransfection of an AP-2 expression vector and a DBH promoter-reporter construct into cultured cells results in a sixfold stimulation of reporter gene expression, demonstrating the ability of AP-2 to trans-activate the DBH promoter. These results identify a new regulatory element on the rat DBH gene and suggest that the AP-2 site plays a role in maintaining basal levels of DBH transcription.
- Published
- 1995
19. A negative regulatory element in the rat dopamine beta-hydroxylase gene contributes to the cell type specificity of expression
- Author
-
John Shaskus, Elaine J. Lewis, and Eustacia Zellmer
- Subjects
Cell type ,Negative regulatory element ,Molecular Sequence Data ,Dopamine beta-Hydroxylase ,Biology ,Biochemistry ,Gene Expression Regulation, Enzymologic ,Cellular and Molecular Neuroscience ,Neuroblastoma ,Transcription (biology) ,Gene expression ,Genes, Regulator ,Tumor Cells, Cultured ,Animals ,Humans ,Promoter Regions, Genetic ,Gene ,Regulation of gene expression ,Base Sequence ,Genetic regulatory element ,DNA, Neoplasm ,Glioma ,Molecular biology ,Rats ,DNA-Binding Proteins ,Gene Expression Regulation, Neoplastic ,Regulatory sequence ,Transcription Factors - Abstract
Dopamine beta-hydroxylase (DBH) catalyzes the synthesis of the neurohormone norepinephrine and is expressed only in noradrenergic and adrenergic cells of the nervous and endocrine systems. We have previously described a positive-acting genetic regulatory element of the DBH that contributes to the restricted expression of this gene. In the study described here, we identify and characterize a negative-acting regulatory element within the 5'-flanking region of the rat DBH gene. This negative regulatory element, which is located between -282 and -232, represses transcription from the DBH promoter in cell lines of noncatecholaminergic origin and binds to nuclear factors found in extracts from both the catecholaminergic cell line SHSY-5Y and the noncatecholaminergic cell lines JEG-3 and C6. The negative regulatory region will reduce transcription from a heterologous promoter in two noncatecholaminergic cell lines. These experiments demonstrate that the selective expression of the DBH gene is controlled by both positive- and negative-acting genetic regulatory elements.
- Published
- 1995
20. Coordinate regulation of adenylate cyclase, protein kinase, and specific enzyme synthesis by cholera toxin in hormonally unresponsive hepatoma cells
- Author
-
Thomas A. Langan, Jayantha Wimalasena, Wesley D. Wicks, Ben H. Leichtling, and Elaine J. Lewis
- Subjects
Cholera Toxin ,Biophysics ,Adenylate kinase ,Protamine Kinase ,Biology ,medicine.disease_cause ,Biochemistry ,Cyclase ,Dexamethasone ,Tyrosine aminotransferase ,Liver Neoplasms, Experimental ,medicine ,Cyclic AMP ,Animals ,Enzyme inducer ,Protein kinase A ,Molecular Biology ,Tyrosine Transaminase ,Prostaglandins E ,Cholera toxin ,Isoproterenol ,Glucagon ,Molecular biology ,Rats ,Enzyme Activation ,Kinetics ,Bucladesine ,ADP-ribosylation ,Enzyme Induction ,biology.protein ,Phosphorylation ,Protein Kinases ,Adenylyl Cyclases - Abstract
Since none of the hormones which activate adenylate cyclase in other tissues have been found to activate adenylate cyclase or to induce tyrosine aminotransferase in cultured Reuber hepatoma cells (H35), despite the stimulatory effects of cyclic AMP derivatives on the latter enzyme, we tested the ability of cholera toxin to influence these processes. At low concentrations cholera toxin was found to mimic the ability of cyclic AMP derivatives to selectively stimulate the synthesis of the aminotransferase. Adenylate cyclase and protein kinase activity were also enhanced, but only after a lag period as in other systems. Specific phosphorylation of endogenous H1 histone was also shown to be increased by cholera toxin treatment. The increase in tyrosine aminotransferase activity is due to an increase in de novo synthesis as shown by radiolabeling experiments utilizing specific immunoprecipitation. The activity of another soluble enzyme induced by dibutyryl cyclic AMP, PEP carboxykinase, was also stimulated by exposure of H35 cells to cholera toxin. Combinations of cholera toxin and dexamethasone led to greater than additive increases in the activity of both the aminotransferase and carboxykinase. Close coupling of cyclic AMP production with protein kinase activation and enzyme induction was suggested by the observation that the ED50 values for the stimulation of adenylate cyclase, cyclic AMP production, protein kinase, and tyrosine aminotransferase activities were found to be the same (5–7 ng/ml) within experimental error. The results indicate that the adenylate cyclase system in H35 cells is functionally responsive and they support the suggestion that activation of protein kinase is functionally linked to induction of specific enzymes.
- Published
- 1980
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.