Search

We present AstroLink, an efficient and versatile clustering algorithm designed to hierarchically classify astrophysically-relevant structures from both synthetic and observational data sets. We build upon CluSTAR-ND, a hierarchical galaxy/(sub)halo finder, so that AstroLink now generates a two-dimensional representation of the implicit clustering structure as well as ensuring that clusters are statistically distinct from the noisy density fluctuations implicit within the $n$-dimensional input data. This redesign replaces the three cluster extraction parameters from CluSTAR-ND with a single parameter, $S$ -- the lower statistical significance threshold of clusters, which can be automatically and reliably estimated via a dynamical model-fitting process. We demonstrate the robustness of this approach compared to AstroLink's predecessors by applying each algorithm to a suite of simulated galaxies defined over various feature spaces. We find that AstroLink delivers a more powerful clustering performance while being $\sim27\%$ faster and using less memory than CluSTAR-ND. With these improvements, AstroLink is ideally suited to extracting a meaningful set of hierarchical and arbitrarily-shaped astrophysical clusters from both synthetic and observational data sets -- lending itself as a great tool for morphological decomposition within the context of hierarchical structure formation., Comment: 12 pages, 10 figures. Accepted to MNRAS

It has been shown in previous publications that the TNG100 simulation quantitatively reproduces the observed reduction in each of the total atomic and total molecular hydrogen gas for galaxies within massive halos, i.e.~dense environments. In this Letter, we study how well TNG50 reproduces the resolved effects of a Virgo-like cluster environment on the gas surface densities of satellite galaxies with $m_* > \! 10^9\,{\rm M}_\odot$ and ${\rm SFR} \! > 0.05\,{\rm M}_\odot\,{\rm yr}^{-1}$. We select galaxies in the simulation that are analogous to those in the HERACLES and VERTICO surveys, and mock-observe them to the common specifications of the data. Although TNG50 does not quantitatively match the observed gas surface densities in the centers of galaxies, the simulation does qualitatively reproduce the trends of gas truncation and central density suppression seen in VERTICO in both HI and H$_2$. This result promises that modern cosmological hydrodynamic simulations can be used to reliably model the post-infall histories of cluster satellite galaxies., Comment: 9 pages, 4 figures, accepted in ApJL

We present CluSTAR-ND, a fast hierarchical galaxy/(sub)halo finder that produces {\bf Clu}stering {\bf S}tructure via {\bf T}ransformative {\bf A}ggregation and {\bf R}ejection in {\bf N}-{\bf D}imensions. It is designed to improve upon Halo-OPTICS -- an algorithm that automatically detects and extracts significant astrophysical clusters from the 3D spatial positions of simulation particles -- by decreasing run-times, possessing the capability for metric adaptivity, and being readily applicable to data with any number of features. We directly compare these algorithms and find that not only does CluSTAR-ND produce a similarly robust clustering structure, it does so in a run-time that is at least $3$ orders of magnitude faster. In optimising CluSTAR-ND's clustering performance, we have also carefully calibrated $4$ of the $7$ CluSTAR-ND parameters which -- unless specified by the user -- will be automatically and optimally chosen based on the input data. We conclude that CluSTAR-ND is a robust astrophysical clustering algorithm that can be leveraged to find stellar satellite groups on large synthetic or observational data sets., Comment: 19 pages, 11 figures, 1 table. Accepted to MNRAS

Cosmological simulations are useful tools for studying the evolution of galaxies, and it is critical to accurately identify galaxies and their halos from raw simulation data. The friends-of-friend (FoF) algorithm has been widely adopted for this purpose because of its simplicity and expandability to higher dimensions. However, it is cost-inefficient when applied to high-resolution simulations because standard FoF implementation leads to too many distance calculations in dense regions. We confirm this through our exercise of applying the 6-dimensional (6D) FoF galaxy finder code, VELOCIraptor (Elahi et al. 2019), on the NewHorizon simulation (Dubois et al. 2021). The high particle resolution of NewHorizon ($M_{\rm star} \sim 10^4 M_{\odot}$) allows a large central number density ($10^{6}\,{\rm kpc}^{-3}$) for typical galaxies, resulting in a few days to weeks of galaxy searches for just one snapshot. Even worse, we observed a significant decrease in the FoF performance in the high-dimensional 6D searches: "the curse of dimensionality" problem. To overcome these issues, we have developed several implementations that can be readily applied to any tree-based FoF code. They include limiting visits to tree nodes, re-ordering the list of particles for searching neighbor particles, and altering the tree structure. Compared to the run with the original code, the new run with these implementations results in the identical galaxy detection with the ideal performance, $O(N \log{N})$, $N$ being the number of particles in a galaxy -- with a speed gain of a factor of 2700 in 3D or 12 in 6D FoF search., Comment: 24 pages, 16 figures, and 2 tables. Accepted for publication in ApJ

We present the Virgo Environment Traced in CO (VERTICO) survey, a new effort to map $^{12}$CO($2-1$), $^{13}$CO($2-1$), and C$^{18}$O($2-1$) in 51 Virgo Cluster galaxies with the Atacama Compact Array, part of the Atacama Large Millimeter/submillimeter Array (ALMA). The primary motivation of VERTICO is to understand the physical mechanisms that perturb molecular gas disks, and therefore star formation and galaxy evolution, in dense environments. This first paper contains an overview of VERTICO's design and sample selection, $^{12}$CO($2-1$) observations, and data reduction procedures. We characterize global $^{12}$CO($2-1$) fluxes and molecular gas masses for the 49 detected VERTICO galaxies, provide upper limits for the two non-detections, and produce resolved $^{12}$CO($2-1$) data products (median resolution $= 8^{\prime\prime} \approx 640~{\rm pc}$). Azimuthally averaged $^{12}$CO($2-1$) radial intensity profiles are presented along with derived molecular gas radii. We demonstrate the scientific power of VERTICO by comparing the molecular gas size--mass scaling relation for our galaxies with a control sample of field galaxies, highlighting the strong effect that radius definition has on this correlation. We discuss the drivers of the form and scatter in the size--mass relation and highlight areas for future work. VERTICO is an ideal resource for studying the fate of molecular gas in cluster galaxies and the physics of environment-driven processes that perturb the star formation cycle. Upon public release, the survey will provide a homogeneous legacy dataset for studying galaxy evolution in our closest cluster., Comment: 68 pages, 13 Figures, 2 Figure Sets, Accepted for publication in ApJS, Online FITS versions of Tables 1, 2, and 3 are available with the journal publication

Using high-resolution Hubble Space Telescope imaging data, we perform a visual morphological classification of $\sim 36,000$ galaxies at $z < 1$ in the DEVILS/COSMOS region. As the main goal of this study, we derive the stellar mass function (SMF) and stellar mass density (SMD) sub-divided by morphological types. We find that visual morphological classification using optical imaging is increasingly difficult at $z > 1$ as the fraction of irregular galaxies and merger systems (when observed at rest-frame UV/blue wavelengths) dramatically increases. We determine that roughly two-thirds of the total stellar mass of the Universe today was in place by $z \sim 1$. Double-component galaxies dominate the SMD at all epochs and increase in their contribution to the stellar mass budget to the present day. Elliptical galaxies are the second most dominant morphological type and increase their SMD by $\sim 2.5$ times, while by contrast, the pure-disk population significantly decreases by $\sim 85\%$. According to the evolution of both high- and low-mass ends of the SMF, we find that mergers and in-situ evolution in disks are both present at $z < 1$, and conclude that double-component galaxies are predominantly being built by the in-situ evolution in disks (apparent as the growth of the low-mass end with time), while mergers are likely responsible for the growth of ellipticals (apparent as the increase of intermediate/high-mass end)., Comment: 29 pages, 22 figures

We build upon Ordering Points To Identify Clustering Structure (OPTICS), a hierarchical clustering algorithm well-known to be a robust data-miner, in order to produce Halo-OPTICS, an algorithm designed for the automatic detection and extraction of all meaningful clusters between any two arbitrary sizes. We then apply Halo-OPTICS to the 3D spatial positions of halo particles within four separate synthetic Milky Way type galaxies, classifying the stellar and dark matter structural hierarchies. Through visualisation of the Halo-OPTICS output, we compare its structure identification to the state-of-the-art galaxy/(sub)halo finder VELOCIraptor, finding excellent agreement even though Halo-OPTICS does not consider kinematic information in this current implementation. We conclude that Halo-OPTICS is a robust hierarchical halo finder, although its determination of lower spatial-density features such as the tails of streams could be improved with the inclusion of extra localised information such as particle kinematics and stellar metallicity into its distance metric., Comment: 18 pages, 12 figures, 2 tables. Accepted by MNRAS

Predicting the merger timescale ($\tau_{\rm merge}$) of merging dark matter halos, based on their orbital parameters and the structural properties of their hosts, is a fundamental problem in gravitational dynamics that has important consequences for our understanding of cosmological structure formation and galaxy formation. Previous models predicting $\tau_{\rm merge}$ have shown varying degrees of success when compared to the results of cosmological $N$-body simulations. We build on this previous work and propose a new model for $\tau_{\rm merge}$ that draws on insights derived from these simulations. We find that published predictions can provide reasonable estimates for $\tau_{\rm merge}$ based on orbital properties at infall, but tend to underpredict $\tau_{\rm merge}$ inside the host virial radius ($R_{200}$) because tidal stripping is neglected, and overpredict it outside $R_{200}$ because the host mass is underestimated. Furthermore, we find that models that account for orbital angular momentum via the circular radius $R_{\rm circ}$ underpredict (overpredict) $\tau_{\rm merge}$ for bound (unbound) systems. By fitting for the dependence of $\tau_{\rm merge}$ on various orbital and host halo properties,we derive an improved model for $\tau_{\rm merge}$ that can be applied to a merging halo at any point in its orbit. Finally, we discuss briefly the implications of our new model for $\tau_{\rm merge}$ for semi-analytical galaxy formation modelling., Comment: 12 pages, 11 figures, accepted for publication in MNRAS

Upcoming measurements of the highly redshifted 21cm line with next-generation radio telescopes such as HERA and SKA will provide the intriguing opportunity to probe dark matter (DM) physics during the Epoch of Reionization (EoR), Cosmic Dawn, and the Dark Ages. With HERA already under construction, there is a pressing need to thoroughly understand the impact of DM physics on the intergalactic medium (IGM) during these epochs. We present first results of a hydrodynamic simulation suite with $2 \times 512^3$ particles in a $(100 \ h^{-1} \ \text{Mpc})^3$ box with DM annihilation and baryonic cooling physics. We focus on redshift $z \sim 11$, just before reionization starts in our simulations, and discuss the imprint of DM annihilation on the IGM and on structure formation. We find that whereas structure formation is not affected by thermal WIMPs heavier than $m_\chi \gtrsim 100 \ \text{MeV}$, heating from $\mathcal{O}$(GeV) DM particles may leave a significant imprint on the IGM that alters the 21cm signal. Cold gas in low density regions is particularly susceptible to the effects of DM heating. We note, however, that delayed energy deposition is not currently accounted for in our simulations., Comment: 8 pages, 4 figures, accepted by ApJ

Resolving faint galaxies in large volumes is critical for accurate cosmic reionisation simulations. While less demanding than hydrodynamical simulations, semi-analytic reionisation models still require very large N-body simulations in order to resolve the atomic cooling limit across the whole reionisation history within box sizes $\gtrsim 100 \, h^{-1} {\rm Mpc}$. To facilitate this, we extend the mass resolution of N-body simulations using a Monte Carlo algorithm. We also propose a method to evolve positions of Monte Carlo halos, which can be an input for semi-analytic reionisation models. To illustrate, we present an extended halo catalogue that reaches a mass resolution of $M_\text{halo} = 3.2 \times 10^7 \, h^{-1} \text{M}_\odot$ in a $105 \, h^{-1} {\rm Mpc}$ box, equivalent to an N-body simulation with $\sim 6800^3$ particles. The resulting halo mass function agrees with smaller volume N-body simulations with higher resolution. Our results also produce consistent two-point correlation functions with analytic halo bias predictions. The extended halo catalogues are applied to the \textsc{meraxes} semi-analytic reionisation model, which improves the predictions on stellar mass functions, star formation rate densities and volume-weighted neutral fractions. Comparison of high resolution large volume simulations with both small volume or low resolution simulations confirms that both low resolution and small volume simulations lead to reionisation ending too rapidly. Lingering discrepancies between the star formation rate functions predicted with and without our extensions can be traced to the uncertain contribution of satellite galaxies., Comment: 15 pages, 15 figures. Accepted for publication in MNRAS

The standard cosmological paradigm currently lacks a detailed account of physics in the dark sector, the dark matter and energy that dominate cosmic evolution. In this paper, we consider the distinguishing factors between three alternative models - warm dark matter, quintessence and coupled dark matter-energy - and \lcdm{} through numerical simulations of cosmological structure formation. Key halo statistics - halo spin/velocity alignment between large-scale structure and neighboring haloes, halo formation time and migration - were compared across cosmologies within the redshift range 0$\leq$$z$$\leq$2.98. We found the alignment of halo motion and spin to large-scale structures and neighbouring haloes to be similar in all cosmologies for a range of redshifts. The search was extended to low density regions, avoiding non-linear disturbances of halo spins, yet very similar alignment trends were found between cosmologies which are difficult to characterize and use as a probe of cosmology. We found haloes in quintessence cosmologies form earlier than their \lcdm{} counterparts. Relating this to the fact that such haloes originate in high density regions, such findings could hold clues to distinguishing factors for the quintessence cosmology from the standard model. Although in general, halo statistics are not an accurate probe of the dark sector physics., Comment: 15 pages, 13 figures

For astronomers to make a significant contribution to the reduction of climate change-inducing greenhouse gas emissions, we first must quantify our sources of emissions and review the most effective approaches for reducing them. Here we estimate that Australian astronomers' total greenhouse gas emissions from their regular work activities are $\gtrsim$25 ktCO$_2$-e/yr (equivalent kilotonnes of carbon dioxide per year). This can be broken into $\sim$15 ktCO$_2$-e/yr from supercomputer usage, $\sim$4.2 ktCO$_2$-e/yr from flights (where individuals' flight emissions correlate with seniority), $>$3.3 ktCO$_2$-e/yr from the operation of observatories, and 2.6$\pm$0.4 ktCO$_2$-e/yr from powering office buildings. Split across faculty scientists, postdoctoral researchers, and PhD students, this averages to $\gtrsim$37 tCO$_2$-e/yr per astronomer, over 40% more than what the average Australian non-dependant emits in total, equivalent to $\sim$5$\times$ the global average. To combat these environmentally unsustainable practices, we suggest astronomers should strongly preference use of supercomputers, observatories, and office spaces that are predominantly powered by renewable energy sources. Where facilities that we currently use do not meet this requirement, their funders should be lobbied to invest in renewables, such as solar or wind farms. Air travel should also be reduced wherever possible, replaced primarily by video conferencing, which should also promote inclusivity., Comment: Accepted Perspective in Nature Astronomy. Significant additions/updates to results from v1. Text refinement post-refereeing since v2. 9 pages (excl. refs), 2 figures

Linking the properties of galaxies to the assembly history of their dark matter haloes is a central aim of galaxy evolution theory. This paper introduces a dimensionless parameter $s\in[0,1]$, the "tree entropy", to parametrise the geometry of a halo's entire mass assembly hierarchy, building on a generalisation of Shannon's information entropy. By construction, the minimum entropy ($s=0$) corresponds to smoothly assembled haloes without any mergers. In contrast, the highest entropy ($s=1$) represents haloes grown purely by equal-mass binary mergers. Using simulated merger trees extracted from the cosmological $N$-body simulation SURFS, we compute the natural distribution of $s$, a skewed bell curve peaking near $s=0.4$. This distribution exhibits weak dependences on halo mass $M$ and redshift $z$, which can be reduced to a single dependence on the relative peak height $\delta_{\rm c}/\sigma(M,z)$ in the matter perturbation field. By exploring the correlations between $s$ and global galaxy properties generated by the SHARK semi-analytic model, we find that $s$ contains a significant amount of information on the morphology of galaxies $-$ in fact more information than the spin, concentration and assembly time of the halo. Therefore, the tree entropy provides an information-rich link between galaxies and their dark matter haloes., Comment: 20 pages, 18 figures

Hierarchical models of structure formation predict that dark matter halo assembly histories are characterised by episodic mergers and interactions with other haloes. An accurate description of this process will provide insights into the dynamical evolution of haloes and the galaxies that reside in them. Using large cosmological N-body simulations, we characterise halo orbits to study the interactions between substructure haloes and their hosts, and how different evolutionary histories map to different classes of orbits. We use two new software tools - WhereWolf, which uses halo group catalogues and merger trees to ensure that haloes are tracked accurately in dense environments, and OrbWeaver, which quantifies each halo's orbital parameters. We demonstrate how WhereWolf improves the accuracy of halo merger trees, and we use OrbWeaver to quantify orbits of haloes. We assess how well analytical prescriptions for the merger timescale from the literature compare to measured merger timescales from our simulations and find that existing prescriptions perform well, provided the ratio of substructure-to-host mass is not too small. In the limit of small substructure-to-host mass ratio, we find that the prescriptions can overestimate the merger timescales substantially, such that haloes are predicted to survive well beyond the end of the simulation. This work highlights the need for a revised analytical prescription for the merger timescale that more accurately accounts for processes such as catastrophic tidal disruption., Comment: 22 pages, 24 figures, accepted for publication in MNRAS

We model the large-scale linear galaxy bias $b_g(x,z)$ as a function of redshift $z$ and observed absolute magnitude threshold $x$ for broadband continuum emission from the far infrared to ultra-violet, as well as for prominent emission lines, such as the H$\alpha$, H$\beta$, Lya and [OII] lines. The modelling relies on the semi-analytic galaxy formation model GALFORM, run on the state-of-the-art $N$-body simulation SURFS with the Planck 2015 cosmology. We find that both the differential bias at observed absolute magnitude $x$ and the cumulative bias for magnitudes brighter than $x$ can be fitted with a five-parameter model: $b_g(x,z)=a + b(1+z)^e(1 + \exp{[(x-c)d]})$. We also find that the bias for the continuum bands follows a very similar form regardless of wavelength due to the mixing of star-forming and quiescent galaxies in a magnitude limited survey. Differences in bias only become apparent when an additional colour separation is included, which suggest extensions to this work could look at different colours at fixed magnitude limits. We test our fitting formula against observations, finding reasonable agreement with some measurements within $1\sigma$ statistical uncertainties, and highlighting areas of improvement. We provide the fitting parameters for various continuum bands, emission lines and intrinsic galaxy properties, enabling a quick estimation of the linear bias in any typical survey of large-scale structure., Comment: Revised manuscript accepted for publication in MNRAS

We present a new self-consistent method for incorporating dark matter annihilation feedback (DMAF) in cosmological N-body simulations. The power generated by DMAF is evaluated at each dark matter (DM) particle which allows for flexible energy injection into the surrounding gas based on the specific DM annihilation model under consideration. Adaptive, individual time steps for gas and DM particles are supported and a new time-step limiter, derived from the propagation of a Sedov--Taylor blast wave, is introduced. We compare this donor-based approach with a receiver-based approach used in recent studies and illustrate the differences by means of a toy example. Furthermore, we consider an isolated halo and a cosmological simulation and show that for these realistic cases, both methods agree well with each other. The extension of our implementation to scenarios such as non-local energy injection, velocity-dependent annihilation cross-sections, and DM decay is straightforward., Comment: 18 pages, 10 (+2) figures

We combine the Shark semi-analytic model of galaxy formation with the ProSpect software tool for spectral energy distribution (SED) generation to study the multi-wavelength emission of galaxies from the far-ultraviolet (FUV) to the far-infrared (FIR) at $0\le z\le 10$. We produce a physical model for the attenuation of galaxies across cosmic time by combining a local Universe empirical relation to compute the dust mass of galaxies from their gas metallicity and mass, attenuation curves derived from radiative transfer calculations of galaxies in the EAGLE hydrodynamic simulation suite, and the properties of Shark galaxies. We are able to produce a wide range of galaxies, from the $z=8$ star-forming galaxies with almost no extinction, $z=2$ submillimeter galaxies, down to the normal star-forming and red sequence galaxies at $z=0$. Quantitatively, we find that Shark reproduces the observed (i) the $z=0$ FUV-to-FIR, (ii) $0\le z\le 3$ rest-frame $K$-band, and (iii) $0\le z\le 10$ rest-frame FUV luminosity functions, (iv) $z\le 8$ UV slopes, (v) the FUV-to-FIR number counts (including the widely disputed 850$\mu$m), (vi) redshift distribution of bright $850\mu$m galaxies and (vii) the integrated cosmic SED from $z=0$ to $z=1$ to an unprecedented level. This is achieved without the need to invoke changes in the stellar initial mass function, dust-to-metal mass ratio, or metal enrichment timescales. Our model predicts star formation in galaxy disks to dominate in the FUV-to-optical, while bulges dominate at the NIR at all redshifts. The FIR sees a strong evolution in which disks dominate at $z\le 1$ and starbursts (triggered by both galaxy mergers and disk instabilities, in an even mix) dominate at higher redshifts, even out to $z=10$., Comment: Accepted for publication in MNRAS after minor corrections (22 pages, 21 figures)

We study the Intra-Halo Stellar Component (IHSC) of Milky Way-mass systems up to galaxy clusters in the Horizon-AGN cosmological hydrodynamical simulation. We identify the IHSC using an improved phase-space galaxy finder algorithm which provides an adaptive, physically motivated and shape-independent definition of this stellar component, that can be applied to halos of arbitrary masses. We explore the IHSC mass fraction-total halo's stellar mass, $f_{M*,IHSC}-M*$, relation and the physical drivers of its scatter. We find that on average the $f_{M*,IHSC}$ increases with $M_{*,tot}$, with the scatter decreasing strongly with mass from 2 dex at $M_{*,tot}\sim10^{11}M_\odot$ to 0.3 dex at group masses. At high masses, $M_{*,tot}>10^{11.5}M_\odot$, $f_{M*,IHSC}$ increases with the number of substructures, and with the mass ratio between the central galaxy and largest satellite, at fixed $M_{*,tot}$. From mid-size groups and systems below $M_{*,tot}<10^{12}M_\odot$, we find that the central galaxy's stellar rotation-to-dispersion velocity ratio, V/{\sigma}, displays the strongest (anti)-correlation with $f_{M*,IHSC}$ at fixed $M_{*,tot}$ of all the galaxy and halo properties explored, transitioning from $f_{M*,IHSC}$<0.1% for high V/{\sigma}, to $f_{M*,IHSC}\sim5$% for low V/{\sigma} galaxies. By studying the $f_{M*,IHSC}$ temporal evolution, we find that, in the former, mergers not always take place, but if they did, they happened early (z>1), while the high $f_{M*,IHSC}$ population displays a much more active merger history. In the case of massive groups and galaxy clusters, $M_{*,tot}>10^{12}M_\odot$, a fraction $f_{M*,IHSC}\sim$10-20% is reached at $z\sim1$ and then they evolve across lines of constant $f_{M*,IHSC}$ modulo some small perturbations. Because of the limited simulation's volume, the latter is only tentative and requires a larger sample of simulated galaxy clusters to confirm., Comment: 21 pages, 17 figures. Submitted to MNRAS. Comments are welcomed

We present TreeFrog, a massively parallel halo merger tree builder that is capable comparing different halo catalogues and producing halo merger trees. The code is written in c++11, use the MPI and OpenMP API's for parallelisation, and includes python tools to read/manipulate the data products produced. The code correlates binding energy sorted particle ID lists between halo catalogues, determining optimal descendant/progenitor matches using multiple snapshots, a merit function that maximises the number of shared particles using pseudo-radial moments, and a scheme for correcting halo merger tree pathologies. Focusing on VELOCIraptor catalogues for this work, we demonstrate how searching multiple snapshots spanning a dynamical time significantly reduces the number of stranded halos, those lacking a descendant or a progenitor, critically correcting poorly resolved halos. We present a new merit function that improves the distinction between primary and secondary progenitors, reducing tree pathologies. We find FOF accretion rates and merger rates show similar mass ratio dependence. The model merger rates from Poole et al, (2017) agree with the measured net growth of halos through mergers., Comment: 18 pages in main text, 23 pages total, 15 figures, 3 tables. Accepted for publication in PASA. Code is available from https://www.github.com/pelahi/TreeFrog

We present VELOCIraptor, a massively parallel galaxy/(sub)halo finder that is also capable of robustly identifying tidally disrupted objects and separate stellar halos from galaxies. The code is written in c++11, use the MPI and OpenMP API's for parallelisation, and includes python tools to read/manipulate the data products produced. We demonstrate the power of the VELOCIraptor (sub)halo finder, showing how it can identify subhalos deep within the host that have negligible density contrasts to their parent halo. We find a subhalo mass-radial distance dependence: large subhalos with mass ratios of $\gtrsim10^{-2}$ are more common in the central regions that smaller subhalos, a result of dynamical friction and low tidal mass loss rates. This dependence is completely absent in (sub)halo finders in common use, which generally search for substructure in configuration space, yet is present in codes that track particles belonging to halos as they fall into other halos, such as HBT+. VELOCIraptor largely reproduces the dependence seen without tracking, finding a similar radial dependence to HBT+ in well resolved halos from our limited resolution fiducial simulation., Comment: 22 pages in main text, 33 pages total, 15 figures, 4 tables. Accepted for publication in PASA. Code available from https://www.github/pelahi/VELOCIraptor-STF

We use TheThreeHundred project, a suite of 324 resimulated massive galaxy clusters embedded in a broad range of environments, to investigate (i) how the gas content of surrounding haloes correlates with phase-space position at $z=0$, and (ii) to investigate the role that ram pressure plays in this correlation. By stacking all 324 normalised phase-space planes containing 169287 haloes and subhaloes, we show that the halo gas content is tightly correlated with phase-space position. At $\sim\,1.5-2\,\text{R}_{\text{200}}$ of the cluster dark matter halo, we find an extremely steep decline in the halo gas content of infalling haloes and subhaloes irrespective of cluster mass, possibly indicating the presence of an accretion shock. We also find that subhaloes are particularly gas-poor, even in the cluster outskirts, which could indicate active regions of ongoing pre-processing. By modelling the instantaneous ram pressure experienced by each halo and subhalo at $z=0$, we show that the ram pressure intensity is also well correlated with phase-space position, which is again irrespective of cluster mass. In fact, we show that regions in the phase-space plane with high differential velocity between a halo or subhalo and its local gas environment, are almost mutually exclusive with high halo gas content regions. This suggests a causal link between the gas content of objects and the instantaneous ram pressure they experience, where the dominant factor is the differential velocity., Comment: 17 pages, 12 figures, accepted to MNRAS

Merger trees harvested from cosmological $N$-body simulations encode the assembly histories of dark matter halos over cosmic time, and are a fundamental component of semi-analytical models (SAMs) of galaxy formation. The ability to compare the tools used to construct merger trees, namely halo finders and tree building algorithms, in an unbiased and systematic manner is critical to assess the quality of merger trees. In this paper, we present the dendogram, a novel method to visualise merger trees, which provides a comprehensive characterisation of a halo's assembly history - tracking subhalo orbits, halo merger events, and the general evolution of halo properties. We show the usefulness of the dendogram as a diagnostic tool of merger trees by comparing halo assembly histories from a single $N$-Body simulation analysed with three different halo-finders -\textsc{VELOCIraptor}, \textsc{AHF} and \textsc{Rockstar} - and their associated tree-builders. Based on our analysis of the resulting dendograms, we highlight how they have been used to motivate improvements to \textsc{VELOCIraptor}. The dendogram software is publicly available online, at: https://github.com/rhyspoulton/MergerTree-Dendograms ., Comment: 18 pages, 18 figures, accepted for publication in PASA

We introduce the THE THREE HUNDRED project, an endeavour to model 324 large galaxy clusters with full-physics hydrodynamical re-simulations. Here we present the data set and study the differences to observations for fundamental galaxy cluster properties and scaling relations. We find that the modelled galaxy clusters are generally in reasonable agreement with observations with respect to baryonic fractions and gas scaling relations at redshift z = 0. However, there are still some (model-dependent) differences, such as central galaxies being too massive, and galaxy colours (g - r) being bluer (about 0.2 dex lower at the peak position) than in observations. The agreement in gas scaling relations down to 10^{13} h^{-1} M_{\odot} between the simulations indicates that particulars of the sub-grid modelling of the baryonic physics only has a weak influence on these relations. We also include - where appropriate - a comparison to three semi-analytical galaxy formation models as applied to the same underlying dark-matter-only simulation. All simulations and derived data products are publicly available., Comment: 20 pages, 8 figures, 7 tables. MNRAS published version

We present a new, open source, free semi-analytic model (SAM) of galaxy formation, Shark, designed to be highly flexible and modular, allowing easy exploration of different physical processes and ways of modelling them. We introduce the philosophy behind Shark and provide an overview of the physical processes included in the model. Shark is written in C++11 and has been parallelized with OpenMP. In the released version (v1.1), we implement several different models for gas cooling, active galactic nuclei, stellar and photo-ionisation feedback, and star formation (SF). We demonstrate the basic performance of Shark using the Planck15 cosmology SURFS simulations, by comparing against a large set of observations, including: the stellar mass function (SMF) and stellar-halo mass relation at z=0-4; the cosmic evolution of the star formation rate density (SFRD), stellar mass, atomic and molecular hydrogen; local gas scaling relations; and structural galaxy properties, finding excellent agreement. Significant improvements over previous SAMs are seen in the mass-size relation for disks/bulges, the gas-stellar mass and stellar mass-metallicity relations. To illustrate the power of Shark in exploring the systematic effects of the galaxy formation modelling, we quantify how the scatter of the SF main sequence and the gas scaling relations changes with the adopted SF law, and the effect of the starbursts H$_2$ depletion timescale on the SFRD and $\Omega_{\rm H_2}$. We compare Shark with other SAMs and the hydrodynamical simulation EAGLE, and find that SAMs have a much higher halo baryon fractions due to large amounts of intra-halo gas, which in the case of EAGLE is in the intergalactic medium., Comment: Final MNRAS version of accepted paper

We compare the evolution of voids formed under the standard cosmological model and two alternative cosmological models. The two models are a quintessence model ($\phi$CDM) and a Coupled Dark Matter-Dark Energy (CDE) model, both of which have evolving and interacting dark sectors. From $N$-body adiabatic hydrodynamical simulations of these models, we measure the statistics and quantify the properties of voids over the redshift range $z=1.5-12$: these include their population size, volumes, shapes and average densities. We find that the latter property has potential as a probe of cosmology, particularly dark energy, as significant differences in average void densities exist between the alternative models and the standard model. We postulate that this signature arises from an increased evacuation rate of particles out of voids, or an earlier start to void evacuation, in the alternative models as a direct consequence of the dynamical scalar field, which also leads to greater void merger rates. Additionally, differences between the two alternative models are likely due to the drag force arising from dark sector coupling, acting on dark matter particles in our coupled model., Comment: 19 pages, 11 figures, accepted by MNRAS

Identifying galaxies in hydrodynamical simulations is a difficult task, particularly in regions of high density such as galaxy groups and clusters. We present a new scale-free shape-independent algorithm to robustly and accurately identify galaxies in simulation, implemented within the phase-space halo-finder code VELOCIraptor. This is achieved by using the full phase-space dispersion tensor for particle assignment and an iterative adjustment of search parameters, which help us overcome common structure finding problems. We apply our improved method to the Horizon-AGN simulation and compare galaxy stellar masses ($M_*$), star formation rates (SFR) and sizes with the elaborate configuration-space halo finder, HaloMaker. Galaxies living in halos with $> 1$ galaxy are the most affected by the shortcomings of real-space finders, with their mass, SFR, and sizes being $> 2$ times larger (smaller) in the case of host (satellite) galaxies. Thus, our ability to measure minor/major merger rates and disentangle environmental effects in simulations can be generally hindered if the identification of galaxies is not treated carefully. Though large systematic differences are obtained on a one-to-one basis, the overall Galaxy Stellar Mass Function, the Star Formation Rate Function and mass-size relations are not greatly affected. This is due to isolated galaxies being the most abundant population, dominating broad statistics., Comment: Accepted for publication in MNRAS. 28 pages, 12 figures

Models of the very early universe, including inflationary models, are argued to produce varying universe domains with different values of fundamental constants and cosmic parameters. Using the cosmological hydrodynamical simulation code from the eagle collaboration, we investigate the effect of the cosmological constant on the formation of galaxies and stars. We simulate universes with values of the cosmological constant ranging from Lambda = 0 to Lambda_0 = 300, where Lambda_0 is the value of the cosmological constant in our Universe. Because the global star formation rate in our Universe peaks at t = 3.5 Gyr, before the onset of accelerating expansion, increases in Lambda of even an order of magnitude have only a small effect on the star formation history and efficiency of the universe. We use our simulations to predict the observed value of the cosmological constant, given a measure of the multiverse. Whether the cosmological constant is successfully predicted depends crucially on the measure. The impact of the cosmological constant on the formation of structure in the universe does not seem to be a sharp enough function of Lambda to explain its observed value alone., Comment: 17 pages, 12 figures, 4 tables. Accepted for publication in MNRAS

The spherical Jeans equation is a widely used tool for dynamical study of gravitating systems in astronomy. Here we test its efficacy in robustly weighing the mass of Milky Way analogues, given they need not be in equilibrium or even spherical. Utilizing Milky Way stellar halos simulated in accordance with $\Lambda{\rm CDM}$ cosmology by Bullock and Johnston (2005) and analysing them under the Jeans formalism, we recover the underlying mass distribution of the parent galaxy, within distance $r/{\rm kpc}\in[10,100]$, with a bias of $\sim12\%$ and a dispersion of $\sim14\%$. Additionally, the mass profiles of triaxial dark matter halos taken from the SURFS simulation, within scaled radius $0.2

We present a comparison of nine galaxy formation models, eight semi-analytical and one halo occupation distribution model, run on the same underlying cold dark matter simulation (cosmological box of co-moving width 125$h^{-1}$ Mpc, with a dark-matter particle mass of $1.24\times 10^9 h^{-1}$ Msun) and the same merger trees. While their free parameters have been calibrated to the same observational data sets using two approaches, they nevertheless retain some 'memory' of any previous calibration that served as the starting point (especially for the manually-tuned models). For the first calibration, models reproduce the observed z = 0 galaxy stellar mass function (SMF) within 3-{\sigma}. The second calibration extended the observational data to include the z = 2 SMF alongside the z~0 star formation rate function, cold gas mass and the black hole-bulge mass relation. Encapsulating the observed evolution of the SMF from z = 2 to z = 0 is found to be very hard within the context of the physics currently included in the models. We finally use our calibrated models to study the evolution of the stellar-to-halo mass (SHM) ratio. For all models we find that the peak value of the SHM relation decreases with redshift. However, the trends seen for the evolution of the peak position as well as the mean scatter in the SHM relation are rather weak and strongly model dependent. Both the calibration data sets and model results are publicly available., Comment: 20 pages, 14 figures (+5 supplementary figures in the Appendix), accepted for publication in MNRAS

Satellite galaxies are commonly used as tracers to measure the line-of-sight velocity dispersion ($\sigma_{\rm LOS}$) of the dark matter halo associated with their central galaxy, and thereby to estimate the halo's mass. Recent observational dispersion estimates of the Local Group, including the Milky Way and M31, suggest $\sigma\sim$50 km/s, which is surprisingly low when compared to the theoretical expectation of $\sigma\sim$100s km/s for systems of their mass. Does this pose a problem for $\Lambda$CDM? We explore this tension using the {\small{SURFS}} suite of $N$-body simulations, containing over 10000 (sub)haloes with well tracked orbits. We test how well a central galaxy's host halo velocity dispersion can be recovered by sampling $\sigma_{\rm LOS}$ of subhaloes and surrounding haloes. Our results demonstrate that $\sigma_{\rm LOS}$ is biased mass proxy. We define an optimal window in $v_{\rm LOS}$ and projected distance ($D_p$) -- $0.5\lesssim D_p/R_{\rm vir}\lesssim1.0$ and $v_{\rm LOS} \lesssim0.5V_{\rm esc}$, where $R_{\rm vir}$ is the virial radius and $V_{\rm esc}$ is the escape velocity -- such that the scatter in LOS to halo dispersion is minimised - $\sigma_{\rm LOS}=(0.5\pm0.1)\sigma_{v,{\rm H}}$. We argue that this window should be used to measure line-of-sight dispersions as a proxy for mass, as it minimises scatter in the $\sigma_{\rm LOS}-M_{\rm vir}$ relation. This bias also naturally explains the results from \cite{mcconnachie2012a}, who used similar cuts when estimating $\sigma_{\rm LOS,LG}$, producing a bias of $\sigma_{\rm LG}=(0.44\pm0.14)\sigma_{v,{\rm H}}$. We conclude that the Local Group's velocity dispersion does not pose a problem for $\Lambda$CDM and has a mass of $\log M_{\rm LG, vir}/M_\odot=12.0^{+0.8}_{-2.0}$., Comment: 8 pages, 7 figures, accepted for publication

We present the Synthetic UniveRses For Surveys ({\sc surfs}) simulations, a set of N-body/Hydro simulations of the concordance $\Lambda$ Cold Dark Matter (\LCDM) cosmology. These simulations use Planck cosmology, contain up to 10 billion particles and sample scales & halo masses down to $1~$kpc & $10^8{\rm M}_\odot$. We identify and track haloes from $z=24$ to today using a state-of-the-art 6D halo finder and merger tree builder. We demonstrate that certain properties of halo merger trees are numerically converged for haloes composed of $\gtrsim100$ particles. Haloes smoothly grow in mass, $V_{\rm max}$, with the mass history characterised by $\log M(a)\propto\exp\left[-(a/\beta)^\alpha\right]$ where $a$ is the scale factor, $\alpha(M)\approx0.8$ \& $\beta(M)\approx0.024$, with these parameters decreasing with decreasing halo mass. Subhaloes follow power-law cumulative mass and velocity functions, i.e. $n(>f)\propto f^{-\alpha}$ with $\alpha_{M}=0.83\pm0.01$ and $\alpha_{V_{\rm max}}=2.13\pm0.03$ for mass \& velocity respectively, independent of redshift, as seen in previous studies. The halo-to-halo scatter in amplitude is $0.9$~dex. The number of subhaloes in a halo weakly correlates with a halo's concentration $c$ \& spin $\lambda$:haloes of high $c$ \& low $\lambda$ have $60\%$ more subhaloes than similar mass haloes of low $c$ \& high $\lambda$. High cadence tracking shows subhaloes are dynamic residents, with $25\%$ leaving their host halo momentarily, becoming a backsplash subhalo, and another $20\%$ changing hosts entirely, in agreement with previous studies. In general, subhaloes have elliptical orbits, $e\approx0.6$, with periods of $2.3^{+2.1}_{-1.7}$~Gyrs. Subhaloes lose most of their mass at pericentric passage with mass loss rates of $\sim40\%$~Gyr$^{-1}$. These catalogues will be made publicly available., Comment: 22 pages, 20 figures, accepted for publication in MNRAS

We investigate the effect of the accelerated expansion of the Universe due to a cosmological constant, $\Lambda$, on the cosmic star formation rate. We utilise hydrodynamical simulations from the EAGLE suite, comparing a $\Lambda$CDM Universe to an Einstein-de Sitter model with $\Lambda=0$. Despite the differences in the rate of growth of structure, we find that dark energy, at its observed value, has negligible impact on star formation in the Universe. We study these effects beyond the present day by allowing the simulations to run forward into the future ($t>13.8$ Gyr). We show that the impact of $\Lambda$ becomes significant only when the Universe has already produced most of its stellar mass, only decreasing the total co-moving density of stars ever formed by ${\approx}15\%$. We develop a simple analytic model for the cosmic star formation rate that captures the suppression due to a cosmological constant. The main reason for the similarity between the models is that feedback from accreting black holes dramatically reduces the cosmic star formation at late times. Interestingly, simulations without feedback from accreting black holes predict an upturn in the cosmic star formation rate for $t>15$ Gyr due to the rejuvenation of massive ($ > 10^{11} \mathrm{M}_{\odot}$) galaxies. We briefly discuss the implication of the weak dependence of the cosmic star formation on $\Lambda$ in the context of the anthropic principle., Comment: Accepted MNRAS. 16 pages, 11 figures. The EAGLE simulation data is available at http://icc.dur.ac.uk/Eagle/database.php

We describe and test a novel Dark Matter Annihilation Feedback (DMAF) scheme that has been implemented into the well known cosmological simulation code \textsf{GADGET-2}. In the models considered here, dark matter can undergo self-annihilation/decay into radiation and baryons. These products deposit energy into the surrounding gas particles and then the dark matter/baryon fluid is self-consistently evolved under gravity and hydrodynamics. We present tests of this new feedback implementation in the case of idealised dark matter halos with gas components for a range of halo masses, concentrations and annihilation rates. For some dark matter models, DMAF's ability to evacuate gas is enhanced in lower mass, concentrated halos where the injected energy is comparable to its gravitational binding energy. Therefore, we expect the strongest signs of dark matter annihilation to imprint themselves onto the baryonic structure of concentrated dwarf galaxies through their baryonic fraction and star formation history. Finally we present preliminary results of the first self-consistent DMAF cosmological box simulations showing that the small scale substructure is washed out for large annihilation rates., Comment: 13 pages, 11 figures

We present measurements of the velocity power spectrum and constraints on the growth rate of structure $f\sigma_{8}$, at redshift zero, using the peculiar motions of 2,062 galaxies in the completed 2MASS Tully-Fisher survey (2MTF). To accomplish this we introduce a model for fitting the velocity power spectrum including the effects of non-linear Redshift Space Distortions (RSD), allowing us to recover unbiased fits down to scales $k=0.2\,h\,{\rm Mpc}^{-1}$ without the need to smooth or grid the data. Our fitting methods are validated using a set of simulated 2MTF surveys. Using these simulations we also identify that the Gaussian distributed estimator for peculiar velocities of \cite{Watkins2015} is suitable for measuring the velocity power spectrum, but sub-optimal for the 2MTF data compared to using magnitude fluctuations $\delta m$, and that, whilst our fits are robust to a change in fiducial cosmology, future peculiar velocity surveys with more constraining power may have to marginalise over this. We obtain \textit{scale-dependent} constraints on the growth rate of structure in two bins, finding $f\sigma_{8} = [0.55^{+0.16}_{-0.13},0.40^{+0.16}_{-0.17}]$ in the ranges $k = [0.007-0.055, 0.55-0.150]\,h\,{\rm Mpc}^{-1}$. We also find consistent results using four bins. Assuming scale-\textit{independence} we find a value $f\sigma_{8} = 0.51^{+0.09}_{-0.08}$, a $\sim16\%$ measurement of the growth rate. Performing a consistency check of General Relativity (GR) and combining our results with CMB data only we find $\gamma = 0.45^{+0.10}_{-0.11}$, a remarkable constraint considering the small number of galaxies. All of our results are completely independent of the effects of galaxy bias, and fully consistent with the predictions of GR (scale-independent $f\sigma_{8}$ and $\gamma\approx0.55$)., Comment: 18 pages, 14 figures, 3 tables. Accepted for publication in MNRAS

We present a comparison of void properties between the standard model of cosmology, $\Lambda$ Cold Dark Matter ($\Lambda$CDM), and two alternative cosmological models with evolving and interacting dark sectors: a quintessence model ($\phi$CDM) and a Coupled Dark Matter-Dark Energy (CDE) model. Using $N$-body simulations of these models, we derive several measures of void statistics and properties, including distributions of void volume, ellipticity, prolateness, and average density. We find that the volume distribution derived from the CDE simulation deviates from the volume distribution derived from the $\Lambda$CDM simulation in the present-day universe, suggesting that the presence of a coupled dark sector could be observable through this statistic. We also find that the distributions of void ellipticity and prolateness are practically indistinguishable among the three models over the redshift range $z=0.0-1.0$, indicating that simple void shape statistics are insensitive to small changes in dark sector physics. Interestingly, we find that the distributions of average void density measured in each of the three simulations are distinct from each other. In particular, voids on average tend to be emptiest under a quintessence model, and densest under the $\Lambda$CDM model. Our results suggest that it is the scalar field present in both alternative models that causes emptier voids to form, while the coupling of the dark sector mitigates this effect by slowing down the evacuation of matter from voids., Comment: 16 pages, 10 figures, accepted by MNRAS

Even as our measurements of cosmological parameters improve, the physical nature of the dark sector of the universe largely remains a mystery. Many effects of dark sector models are most prominent at very large scales and will rely on future galaxy surveys to elucidate. In this paper we compare the topological properties of the large scale dark matter distribution in a number of cosmological models using hydrodynamical simulations and the cosmological genus statistic. Genus curves are computed from z = 11 to z = 0 for {\Lambda}CDM, Quintessence and Warm Dark Matter models, over a scale range of 1 to 20 Mpc/h. The curves are analysed in terms of their Hermite spectra to describe the power contained in non-Gaussian deformations to the cosmological density field. We find that the {\Lambda}CDM and {\Lambda}WDM models produce nearly identical genus curves indicating no topological differences in structure formation. The Quintessence model, which differs solely in its expansion history, produces significant differences in the strength and redshift evolution of non-Gaussian modes associated with higher cluster abundances and lower void abundances. These effects are robust to cosmic variance and are characteristically different from those produced by tweaking the parameters of a {\Lambda}CDM model. Given the simplicity and similarity of the models, detecting these discrepancies represents a promising avenue for understanding the effect of non-standard cosmologies on large-scale structure., Comment: 11 pages, 9 figures, submitted to MNRAS

We present a clustering comparison of 12 galaxy formation models (including Semi-Analytic Models (SAMs) and Halo Occupation Distribution (HOD) models) all run on halo catalogues and merger trees extracted from a single {\Lambda}CDM N-body simulation. We compare the results of the measurements of the mean halo occupation numbers, the radial distribution of galaxies in haloes and the 2-Point Correlation Functions (2PCF). We also study the implications of the different treatments of orphan (galaxies not assigned to any dark matter subhalo) and non-orphan galaxies in these measurements. Our main result is that the galaxy formation models generally agree in their clustering predictions but they disagree significantly between HOD and SAMs for the orphan satellites. Although there is a very good agreement between the models on the 2PCF of central galaxies, the scatter between the models when orphan satellites are included can be larger than a factor of 2 for scales smaller than 1 Mpc/h. We also show that galaxy formation models that do not include orphan satellite galaxies have a significantly lower 2PCF on small scales, consistent with previous studies. Finally, we show that the 2PCF of orphan satellites is remarkably different between SAMs and HOD models. Orphan satellites in SAMs present a higher clustering than in HOD models because they tend to occupy more massive haloes. We conclude that orphan satellites have an important role on galaxy clustering and they are the main cause of the differences in the clustering between HOD models and SAMs., Comment: 17 pages, 7 figures

The existence of substructure in halos of annihilating dark matter would be expected to substantially boost the rate at which annihilation occurs. Ultracompact minihalos of dark matter (UCMHs) are one of the more extreme examples of this. The boosted annihilation can inject significant amounts of energy into the gas of a galaxy over its lifetime. Here we determine the impact of the boost factor from UCMH substructure on the heating of galactic gas in a Milky Way-type galaxy, by means of N-body simulation. If $1\%$ of the dark matter exists as UCMHs, the corresponding boost factor can be of order $10^5$. For reasonable values of the relevant parameters (annihilation cross section $3\times10^{-26} ~\textrm{cm}^3~ \textrm{s}^{-1}$, dark matter mass 100 GeV, 10% heating efficiency), we show that the presence of UCMHs at the 0.1% level would inject enough energy to eject significant amounts of gas from the halo, potentially preventing star formation within $\sim$1 kpc of the halo centre., Comment: 14 pages, 3 figures

Recent cosmological hydrodynamical simulations suggest that integral field spectroscopy can connect the high-order stellar kinematic moments h3 (~skewness) and h4 (~kurtosis) in galaxies to their cosmological assembly history. Here, we assess these results by measuring the stellar kinematics on a sample of 315 galaxies, without a morphological selection, using 2D integral field data from the SAMI Galaxy Survey. A proxy for the spin parameter ($\lambda_{R_e}$) and ellipticity ($\epsilon_e$) are used to separate fast and slow rotators; there exists a good correspondence to regular and non-regular rotators, respectively, as also seen in earlier studies. We confirm that regular rotators show a strong h3 versus $V/\sigma$ anti-correlation, whereas quasi-regular and non-regular rotators show a more vertical relation in h3 and $V/\sigma$. Motivated by recent cosmological simulations, we develop an alternative approach to kinematically classify galaxies from their individual h3 versus $V/\sigma$ signatures. We identify five classes of high-order stellar kinematic signatures using Gaussian mixture models. Class 1 corresponds to slow rotators, whereas Classes 2-5 correspond to fast rotators. We find that galaxies with similar $\lambda_{R_e}-\epsilon_e$ values can show distinctly different h3-$V/\sigma$ signatures. Class 5 objects are previously unidentified fast rotators that show a weak h3 versus $V/\sigma$ anti-correlation. These objects are predicted to be disk-less galaxies formed by gas-poor mergers. From morphological examination, however, there is evidence for large stellar disks. Instead, Class 5 objects are more likely disturbed galaxies, have counter-rotating bulges, or bars in edge-on galaxies. Finally, we interpret the strong anti-correlation in h3 versus $V/\sigma$ as evidence for disks in most fast rotators, suggesting a dearth of gas-poor mergers among fast rotators., Comment: Accepted for Publication in The Astrophysical Journal. 35 pages and 30 figures, abstract abridged for arXiv submission. The key figures of the paper are: 7, 11, 12 , and 14

We examine the properties of the galaxies and dark matter haloes residing in the cluster infall region surrounding the simulated $\Lambda$CDM galaxy cluster studied by Elahi et al. (2016) at z=0. The $1.1\times10^{15}h^{-1}\text{M}_{\odot}$ galaxy cluster has been simulated with eight different hydrodynamical codes containing a variety of hydrodynamic solvers and subgrid schemes. All models completed a dark-matter only, non-radiative and full-physics run from the same initial conditions. The simulations contain dark matter and gas with mass resolution $m_{\text{DM}}=9.01\times 10^8h^{-1}\text{M}_{\odot}$ and $m_{\text{gas}}=1.9\times 10^8h^{-1}\text{M}_{\odot}$ respectively. We find that the synthetic cluster is surrounded by clear filamentary structures that contain ~60% of haloes in the infall region with mass ~$10^{12.5} - 10^{14} h^{-1}\text{M}_{\odot}$, including 2-3 group-sized haloes ($> 10^{13}h^{-1}\text{M}_{\odot}$). However, we find that only ~10% of objects in the infall region are subhaloes residing in haloes, which may suggest that there is not much ongoing preprocessing occurring in the infall region at z=0. By examining the baryonic content contained within the haloes, we also show that the code-to-code scatter in stellar fraction across all halo masses is typically ~2 orders of magnitude between the two most extreme cases, and this is predominantly due to the differences in subgrid schemes and calibration procedures that each model uses. Models that do not include AGN feedback typically produce too high stellar fractions compared to observations by at least ~1 order of magnitude., Comment: 14 pages, 9 figures, 1 table; accepted for publication in MNRAS

Warm Dark Matter (WDM) models offer an attractive alternative to the current Cold Dark Matter (CDM) cosmological model. We present a novel method to differentiate between WDM and CDM cosmologies, namely using weak lensing; this provides a unique probe as it is sensitive to all the "matter in the beam", not just dark matter haloes and the galaxies that reside in them, but also the diffuse material between haloes. We compare the weak lensing maps of CDM clusters to those in a WDM model corresponding to a thermally produced $0.5$~keV dark matter particle. Our analysis clearly shows that the weak lensing magnification, convergence and shear distributions can be used to distinguish between CDM and WDM models. WDM models {\em increase} the probability of weak magnifications, with the differences being significant to $\gtrsim5\sigma$, while leaving no significant imprint on the shear distribution. WDM clusters analysed in this work are more homogeneous than CDM ones, and the fractional decrease in the amount of material in haloes is proportional to the average increase in the magnification. This difference arises from matter that would be bound in compact haloes in CDM being smoothly distributed over much larger volumes at lower densities in WDM. Moreover, the signature does not solely lie in the probability distribution function but in the full spatial distribution of the convergence field., Comment: 6 pages, 3 figures, accepted for publication in APJ

Merger trees are routinely used to follow the growth and merging history of dark matter haloes and subhaloes in simulations of cosmic structure formation. Srisawat et al. (2013) compared a wide range of merger-tree-building codes. Here we test the influence of output strategies and mass resolution on tree-building. We find that, somewhat surprisingly, building the tree from more snapshots does not generally produce more complete trees; instead, it tends to short- en them. Significant improvements are seen for patching schemes which attempt to bridge over occasional dropouts in the underlying halo catalogues or schemes which combine the halo-finding and tree-building steps seamlessly. The adopted output strategy does not affec- t the average number of branches (bushiness) of the resultant merger trees. However, mass resolution has an influence on both main branch length and the bushiness. As the resolution increases, a halo with the same mass can be traced back further in time and will encounter more small progenitors during its evolutionary history. Given these results, we recommend that, for simulations intended as precursors for galaxy formation models where of order 100 or more snapshots are analysed, the tree-building routine should be integrated with the halo finder, or at the very least be able to patch over multiple adjacent snapshots., Comment: 16 pages, 14 figures, accepted by MNRAS

We present a renewed look at M31's Giant Stellar Stream along with the nearby structures Stream C and Stream D, exploiting a new algorithm capable of fitting to the red giant branch (RGB) of a structure in both colour and magnitude space. Using this algorithm, we are able to generate probability distributions in distance, metallicity and RGB width for a series of subfields spanning these structures. Specifically, we confirm a distance gradient of approximately 20 kpc per degree along a 6 degree extension of the Giant Stellar Stream, with the farthest subfields from M31 lying ~ 120 kpc more distant than the inner-most subfields. Further, we find a metallicity that steadily increases from -0.7^{+0.1}_{-0.1} dex to -0.2^{+0.2}_{-0.1} dex along the inner half of the stream before steadily dropping to a value of -1.0^{+0.2}_{-0.2} dex at the farthest reaches of our coverage. The RGB width is found to increase rapidly from 0.4^{+0.1}_{-0.1} dex to 1.1^{+0.2}_{-0.1} dex in the inner portion of the stream before plateauing and decreasing marginally in the outer subfields of the stream. In addition, we estimate Stream C to lie at a distance between 794 and 862 kpc and Stream D between 758 kpc and 868 kpc. We estimate the median metallicity of Stream C to lie in the range -0.7 to -1.6 dex and a metallicity of -1.1^{+0.3}_{-0.2} dex for Stream D. RGB widths for the two structures are estimated to lie in the range 0.4 to 1.2 dex and 0.3 to 0.7 dex respectively. In total, measurements are obtained for 19 subfields along the Giant Stellar Stream, 4 along Stream C, 5 along Stream D and 3 general M31 spheroid fields for comparison. We thus provide a higher resolution coverage of the structures in these parameters than has previously been available in the literature., Comment: Accepted for publication in the Monthly Notices of the Royal Astronomical Society (accepted 29 Feb 2016). 18 pages, 7 figures, 2 tables

Building on the initial results of the nIFTy simulated galaxy cluster comparison, we compare and contrast the impact of baryonic physics with a single massive galaxy cluster, run with 11 state-of-the-art codes, spanning adaptive mesh, moving mesh, classic and modern SPH approaches. For each code represented we have a dark matter only (DM) and non-radiative (NR) version of the cluster, as well as a full physics (FP) version for a subset of the codes. We compare both radial mass and kinematic profiles, as well as global measures of the cluster (e.g. concentration, spin, shape), in the NR and FP runs with that in the DM runs. Our analysis reveals good consistency (<= 20%) between global properties of the cluster predicted by different codes when integrated quantities are measured within the virial radius R200. However, we see larger differences for quantities within R2500, especially in the FP runs. The radial profiles reveal a diversity, especially in the cluster centre, between the NR runs, which can be understood straightforwardly from the division of codes into classic SPH and non-classic SPH (including the modern SPH, adaptive and moving mesh codes); and between the FP runs, which can also be understood broadly from the division of codes into those that include AGN feedback and those that do not. The variation with respect to the median is much larger in the FP runs with different baryonic physics prescriptions than in the NR runs with different hydrodynamics solvers., Comment: 24 pages, 13 figures, MNRAS submitted

We examine subhaloes and galaxies residing in a simulated LCDM galaxy cluster ($M^{\rm crit}_{200}=1.1\times10^{15}M_\odot/h$) produced by hydrodynamical codes ranging from classic Smooth Particle Hydrodynamics (SPH), newer SPH codes, adaptive and moving mesh codes. These codes use subgrid models to capture galaxy formation physics. We compare how well these codes reproduce the same subhaloes/galaxies in gravity only, non-radiative hydrodynamics and full feedback physics runs by looking at the overall subhalo/galaxy distribution and on an individual objects basis. We find the subhalo population is reproduced to within $\lesssim10\%$ for both dark matter only and non-radiative runs, with individual objects showing code-to-code scatter of $\lesssim0.1$ dex, although the gas in non-radiative simulations shows significant scatter. Including feedback physics significantly increases the diversity. Subhalo mass and $V_{max}$ distributions vary by $\approx20\%$. The galaxy populations also show striking code-to-code variations. Although the Tully-Fisher relation is similar in almost all codes, the number of galaxies with $10^{9}M_\odot/h\lesssim M_*\lesssim 10^{12}M_\odot/h$ can differ by a factor of 4. Individual galaxies show code-to-code scatter of $\sim0.5$ dex in stellar mass. Moreover, strong systematic differences exist, with some codes producing galaxies $70\%$ smaller than others. The diversity partially arises from the inclusion/absence of AGN feedback. Our results combined with our companion papers demonstrate that subgrid physics is not just subject to fine-tuning, but the complexity of building galaxies in all environments remains a challenge. We argue even basic galaxy properties, such as the stellar mass to halo mass, should be treated with errors bars of $\sim0.2-0.4$ dex., Comment: 17 pages (+4 page appendix), 16 figures, 2 tables; accepted for publication in MNRAS

We have simulated the formation of a massive galaxy cluster (M$_{200}^{\rm crit}$ = 1.1$\times$10$^{15}h^{-1}M_{\odot}$) in a $\Lambda$CDM universe using 10 different codes (RAMSES, 2 incarnations of AREPO and 7 of GADGET), modeling hydrodynamics with full radiative subgrid physics. These codes include Smoothed-Particle Hydrodynamics (SPH), spanning traditional and advanced SPH schemes, adaptive mesh and moving mesh codes. Our goal is to study the consistency between simulated clusters modeled with different radiative physical implementations - such as cooling, star formation and AGN feedback. We compare images of the cluster at $z=0$, global properties such as mass, and radial profiles of various dynamical and thermodynamical quantities. We find that, with respect to non-radiative simulations, dark matter is more centrally concentrated, the extent not simply depending on the presence/absence of AGN feedback. The scatter in global quantities is substantially higher than for non-radiative runs. Intriguingly, adding radiative physics seems to have washed away the marked code-based differences present in the entropy profile seen for non-radiative simulations in Sembolini et al. (2015): radiative physics + classic SPH can produce entropy cores. Furthermore, the inclusion/absence of AGN feedback is not the dividing line -as in the case of describing the stellar content- for whether a code produces an unrealistic temperature inversion and a falling central entropy profile. However, AGN feedback does strongly affect the overall stellar distribution, limiting the effect of overcooling and reducing sensibly the stellar fraction., Comment: 20 pages, 13 figures, submitted to MNRAS

We propose a common terminology for use in describing both temporal merger trees and spatial structure trees for dark-matter halos. We specify a unified data format in HDF5 and provide example I/O routines in C, FORTRAN and PYTHON., Comment: Technical report: a proposed merger tree data format. Not submitted to any journal. Source code available at https://bitbucket.org/ProfPAThomas/mergertree

We study cluster mass dark matter haloes, their progenitors and surroundings in an coupled Dark Matter-Dark Energy model and compare it to quintessence and $\Lambda$CDM models with adiabatic zoom simulations. When comparing cosmologies with different expansions histories, growth functions & power spectra, care must be taken to identify unambiguous signatures of alternative cosmologies. Shared cosmological parameters, such as $\sigma_8$, need not be the same for optimal fits to observational data. We choose to set our parameters to $\Lambda$CDM $z=0$ values. We find that in coupled models, where DM decays into DE, haloes appear remarkably similar to $\Lambda$CDM haloes despite DM experiencing an additional frictional force. Density profiles are not systematically different and the subhalo populations have similar mass, spin, and spatial distributions, although (sub)haloes are less concentrated on average in coupled cosmologies. However, given the scatter in related observables ($V_{\rm max},R_{V_{\rm max}}$), this difference is unlikely to distinguish between coupled and uncoupled DM. Observations of satellites of MW and M31 indicate a significant subpopulation reside in a plane. Coupled models do produce planar arrangements of satellites of higher statistical significance than $\Lambda$CDM models, however, in all models these planes are dynamically unstable. In general, the nonlinear dynamics within and near large haloes masks the effects of a coupled dark sector. The sole environmental signature we find is that small haloes residing in the outskirts are more deficient in baryons than their $\Lambda$CDM counterparts. The lack of a pronounced signal for a coupled dark sector strongly suggests that such a phenomena would be effectively hidden from view., Comment: 13 pages, 14 figures, 2 tables, accepted for publication in MNRAS

Merging haloes with similar masses (i.e., major mergers) pose significant challenges for halo finders. We compare five halo finding algorithms' (AHF, HBT, Rockstar, SubFind, and VELOCIraptor) recovery of halo properties for both isolated and cosmological major mergers. We find that halo positions and velocities are often robust, but mass biases exist for every technique. The algorithms also show strong disagreement in the prevalence and duration of major mergers, especially at high redshifts (z>1). This raises significant uncertainties for theoretical models that require major mergers for, e.g., galaxy morphology changes, size changes, or black hole growth, as well as for finding Bullet Cluster analogues. All finders not using temporal information also show host halo and subhalo relationship swaps over successive timesteps, requiring careful merger tree construction to avoid problematic mass accretion histories. We suggest that future algorithms should combine phase-space and temporal information to avoid the issues presented., Comment: Figs. 2, 4, and 7 show the main issues. This project was initiated at the Subhaloes Going Notts conference (http://popia.ft.uam.es/SubhaloesGoingNotts/Home.html). MNRAS submitted

We present a comparison of 14 galaxy formation models: 12 different semi-analytical models and 2 halo-occupation distribution models for galaxy formation based upon the same cosmological simulation and merger tree information derived from it. The participating codes have proven to be very successful in their own right but they have all been calibrated independently using various observational data sets, stellar models, and merger trees. In this paper we apply them without recalibration and this leads to a wide variety of predictions for the stellar mass function, specific star formation rates, stellar-to- halo mass ratios, and the abundance of orphan galaxies. The scatter is much larger than seen in previous comparison studies primarily because the codes have been used outside of their native environment within which they are well tested and calibrated. The purpose of the `nIFTy comparison of galaxy formation models' is to bring together as many different galaxy formation modellers as possible and to investigate a common approach to model calibration. This paper provides a unified description for all participating models and presents the initial, uncalibrated comparison as a baseline for our future studies where we will develop a common calibration framework and address the extent to which that reduces the scatter in the model predictions seen here., Comment: 35 pages, 20 figures, accepted for publication in MNRAS