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The understanding of protein structure, folding, and interaction with other proteins remains one of the grand challenges of modern biology. Tremendous progress has been made thanks to X-ray- or electron-based techniques that have provided atomic configurations of proteins, and their solvation shell. These techniques though require a large number of similar molecules to provide an average view, and lack detailed compositional information that might play a major role in the biochemical activity of these macromolecules. Based on its intrinsic performance and recent impact in materials science, atom probe tomography (APT) has been touted as a potential novel tool to analyse biological materials, including proteins. However, analysis of biomolecules in their native, hydrated state by APT have not yet been routinely achieved, and the technique's true capabilities remain to be demonstrated. Here, we present and discuss systematic analyses of individual amino-acids in frozen aqueous solutions on two different nanoporous metal supports across a wide range of analysis conditions. Using a ratio of the molecular ions of water as a descriptor for the conditions of electrostatic field, we study the fragmentation and behavior of those amino acids. We discuss the importance sample support, specimen preparation route, acquisition conditions and data analysis, to pave the way towards establishing guidelines for cryo-APT analysis of biomolecules.

The application of atom probe tomography (APT) to frozen liquids is limited by difficulties in specimen preparation. Here, we report on the use of nanoporous Cu needles as a physical framework to hold water ice for investigation using APT. Nanoporous Cu needles are prepared by the electropolishing and dealloying of Cu-Mn matchstick precursors. Cryogenic scanning electron microscopy and focused-ion beam milling reveal a hierarchical, dendritic, highly-wettable microstructure. The atom probe mass spectrum is dominated by peaks of Cu+ and H(H2O)n+ up to n <= 3, and the reconstructed volume shows the protrusion of a Cu ligament into an ice-filled pore. The continuous Cu ligament network electrically connects the apex to the cryostage, leading to enhanced electric field at the apex and increased cooling, both of which simplify the mass spectrum compared to previous reports.

For its potential as a catalyst, nanoporous gold (NPG) prepared through dealloying of bulk Ag-Au alloys has been extensively investigated. NPG thin films can offer ease of handling, better tunability of the chemistry and microstructure of the nanoporous structure, and represent a more sustainable usage of scarce resources. These films are however prone to intergranular cracking during dealloying, limiting their stability and potential applications. Here, we set out to systematically investigate the grain boundaries in Au28Ag72 thin films. We observe that a sample synthesized at 400 {\deg}C is at least 2.5 times less prone to cracking compared to a sample synthesized at room temperature. This correlates with a higher density of coincident site lattice grain boundaries, especially the density of coherent sigma 3, increased, which appear resistant against cracking. Nanoscale compositional analysis of random high-angle grain boundaries reveals prominent Ag enrichment up to 77 at.%, whereas sigma 3 coherent twin boundaries show Au enrichment of up to 30 at.%. The misorientation and the chemistry of grain boundaries hence affect their dealloying behavior, which in turn controls the cracking, and the possible longevity of NPG thin films for application in electrocatalysis.

Reliable and consistent preparation of atom probe tomography (APT) specimens from aqueous and hydrated biological specimens remains a significant challenge. One particularly difficult process step is the use of a focused ion beam (FIB) instrument for preparing the required needle-shaped specimen, typically involving a "lift-out" procedure of a small sample of material. Here, two alternative substrate designs are introduced that enable using FIB only for sharpening, along with example APT datasets. The first design is a laser-cut FIB-style half-grid close to those used for transmission-electron microscopy, that can be used in a grid holder compatible with APT pucks. The second design is a larger, standalone self-supporting substrate called a "crown", with several specimen positions that self-aligns in APT pucks, prepared by electrical discharge machining (EDM). Both designs are made nanoporous, to provide strength to the liquid-substrate interface, using chemical and vacuum dealloying. We select alpha brass a simple, widely available, lower-cost alternative to previously proposed substrates. We present the resulting designs, APT data, and provide suggestions to help drive wider community adoption.

MXenes are a family of 2D transition metal carbides and nitrides with remarkable properties and great potential for energy storage and catalysis applications. However, their oxidation behavior is not yet fully understood, and there are still open questions regarding the spatial distribution and precise quantification of surface terminations, intercalated ions, and possible uncontrolled impurities incorporated during synthesis and processing. Here, atom probe tomography analysis of as-synthesized Ti$_3$C$_2$T$_x$ MXenes reveals the presence of alkali (Li, Na) and halogen (Cl, F) elements as well as unetched Al. Following oxidation of the colloidal solution of MXenes, it is observed that the alkalies enriched in TiO$_2$ nanowires. Although these elements are tolerated through the incorporation by wet chemical synthesis, they are often overlooked when the activity of these materials is considered, particularly during catalytic testing. This work demonstrates how the capability of atom probe tomography to image these elements in 3D at the near-atomic scale can help to better understand the activity and degradation of MXenes, in order to guide their synthesis for superior functional properties.

Repeatable and reliable site-specific preparation of specimens for atom probe tomography (APT) at cryogenic temperatures has proven challenging. A generalized workflow is required for cryogenic-specimen preparation including lift-out via focused-ion beam and in-situ deposition of capping layers, to strengthen specimens that will be exposed to high electric field and stresses during field evaporation in APT, and protect them from environment during transfer into the atom probe. Here, we build on existing protocols, and showcase preparation and analysis of a variety of metals, oxides and supported frozen liquids and battery materials. We demonstrate reliable in-situ deposition of a metallic capping layer that significantly improve the atom probe data quality for challenging material systems, particularly battery cathode materials which are subjected to delithiation during the atom probe analysis itself. Our workflow designed is versatile and transferable widely to other instruments.

Introduction of interstitial dopants has opened a new pathway to optimize nanoparticle catalytic activity for, e.g., hydrogen evolution/oxidation and other reactions. Here, we discuss the stability of a property-enhancing dopant, B, introduced through controlled synthesis of an electrocatalyst Pd aerogel. We observe significant removal of B after the hydrogen evolution/oxidation reaction. Ab-initio calculations show that the high stability of sub-surface B in Pd is substantially reduced when H is ad/absorbed on the surface, favoring its departure from the host nanostructure. The destabilization of sub-surface B is more pronounced as more H occupies surface sites and empty interstitial sites. We hence demonstrate that the H2 fuel/product itself favors the microstructural degradation of the electrocatalyst and an associated drop in activity.

Gas-solid reactions are cornerstones of many catalytic and redox processes that will underpin the energy and sustainability transition. The specific case of hydrogen-based iron oxide reduction is the foundation to render the global steel industry fossil-free, an essential target as iron production is the largest single industrial emitter of carbon dioxide. Our perception of gas-solid reactions has not only been limited by the availability of state-of-the-art techniques which can delve into the reacted solids in great structural and chemical detail, but we continue to miss an important reaction partner that defines the thermodynamics and kinetics of gas phase reactions: the gas molecules. In this investigation, we use the latest development in cryogenic atom probe tomography to study the quasi in-situ evolution of gas phase heavy water at iron-iron oxide interfaces resulting from the direct reduction of iron oxide by deuterium gas at 700{\deg}C. The findings provide new insights into the formation kinetics and location of water formed during hydrogen-based reduction of FeO, an its interaction with the ongoing redox reaction.

When solid-state redox-driven phase transformations are associated with mass loss, vacancies are produced that develop into pores. These pores can influence the kinetics of certain redox and phase transformation steps. We investigated the structural and chemical mechanisms in and at pores in a combined experimental-theoretical study, using the reduction of iron oxide by hydrogen as a model system. The redox product (water) accumulates inside the pores and shifts the local equilibrium at the already reduced material back towards re-oxidation into cubic-Fe1-xO (where x refers to Fe deficiency, space group Fm3-m). This effect helps to understand the sluggish reduction of cubic-Fe1-xO by hydrogen, a key process for future sustainable steelmaking.

Si-anodes have long been candidates thanks to an expected ten-fold increase in capacity compared to graphite. However, details of the mechanisms governing their degradation remain elusive, hindering science-guided development of long-lived Si-based anodes. Here we demonstrate how the latest developments in cryo-atom probe tomography enable the in-depth analysis of the electrode and electrolyte, and their interface at atomic-level.

Fuel cells recombine water from H2 and O2 thereby powering e.g. cars or houses with no direct carbon emission. In anion-exchange membrane fuel cells (AEMFCs), to reach high power densities, operating at high pH is an alternative to using large volumes of noble metals catalysts at the cathode, where the oxygen-reduction reaction occurs. However, the sluggish kinetics of the hydrogen-oxidation reaction (HOR) hinders upscaling despite promising catalysts. Here, we observe an unexpected ingress of B into Pd nano-catalysts synthesised by wet-chemistry, gain control over this B-doping, and report on its influence on the HOR activity in alkaline conditions. We rationalize our findings using ab-initio calculations of both H- and OH-adsorption on B-doped Pd. Using this "impurity engineering" approach, we thus design Pt-free catalysts as required in electrochemical energy conversion devices, e.g. next generations of AEMFCs, that satisfy the economic and environmental constraints, i.e. reasonable operating costs and long-term stability, to enable the hydrogen economy.

The worldwide developments of electric vehicles, as well as large-scale or grid-scale energy storage to compensate the intermittent nature of renewable energy generation has generated a surge of interest in battery technology. Understanding the factors controlling battery capacity and, critically, their degradation mechanisms to ensure long-term, sustainable and safe operation requires detailed knowledge of their microstructure and chemistry, and their evolution under operating conditions, on the nanoscale. Atom probe tomography (APT) provides compositional mapping of materials in three-dimensions with sub-nanometre resolution, and is poised to play a key role in battery research. However, APT is underpinned by an intense electric-field that can drive lithium migration, and many battery materials are reactive oxides, requiring careful handling and sample transfer. Here, we report on the analysis of both anode and cathode materials, and show that electric-field driven migration can be suppressed by using shielding by embedding powder particles in a metallic matrix or by using a thin conducting surface layer. We demonstrate that for a typical cathode material, cryogenic specimen preparation and transport under ultra-high vacuum leads to major delithiation of the specimen during the analysis. In contrast, transport of specimens through air enables analysis of the material. Finally, we discuss the possible physical underpinnings and discuss ways forward to enable shield of the electric field, which helps address the challenges inherent to the APT analysis of battery materials.

Numerous metallurgical and materials science applications depend on quantitative atomic-scale characterizations of environmentally-sensitive materials and their transient states. Studying the effect upon materials subjected to thermochemical treatments in specific gaseous atmospheres is of central importance for specifically studying a material's resistance to certain oxidative or hydrogen environments. It is also important for investigating catalytic materials, direct reduction of an oxide, particular surface science reactions or nanoparticle fabrication routes. This manuscript realizes such experiments upon a thermochemical reaction chamber called the Reacthub and allows for transferring treated materials under cryogenic & ultrahigh vacuum workflow conditions for characterisation by either atom probe or scanning Xe+/electron microscopies. Two examples are discussed in the present study. One protocol was in the deuterium gas charging (25 kPa D2 at 200 {\deg}C) of a high-manganese twinning-induced-plasticity steel and characterization of the ingress and trapping of hydrogen at various features (grain boundaries in particular) in efforts to relate this to the steel's hydrogen embrittlement susceptibility. Deuterium was successfully detected after gas charging but most contrast originated from the complex ion FeOD+ signal and the feature may be an artefact. The second example considered the direct deuterium reduction (5 kPa D2 at 700 {\deg}C) of a single crystal wuestite sample, demonstrating that under a standard thermochemical treatment causes rapid reduction upon the nanoscale. Further studies are required for complete confidence about these phenomena, but these experiments successfully demonstrate that how an ex-situ thermochemical treatment can be realised that captures environmentally-sensitive transient states that can be analysed by atomic-scale by atom probe microscope.

Metal nano-aerogels combine a large surface area, a high structural stability, and a high catalytic activity towards a variety of chemical reactions. The performance of such nanostructures is underpinned by the atomic-level distribution of their constituents. Yet monitoring their sub-nanoscale structure and composition to guide property optimization remains extremely challenging. Here, we synthesized Pd nano-aerogels from a K2PdCl4 precursor and two different NaBH4 reductant concentrations in distilled water. Atom probe tomography reveals that the aerogel is poly-crystalline and that impurities (Na, K) are integrated from the solution into grain boundaries. Ab initio calculations indicate that these impurities preferentially bound to the Pd-metal surface and are ultimately found in grain boundaries forming as the particles coalesce during synthesis, with Na atoms thermodynamically equilibrating with the surrounding solution and K atoms remaining between growing grains. If controlled, impurity integration, i.e. grain boundary decoration, may offer opportunities for designing new nano-aerogels.

The eutectic Ga-In (EGaIn) alloy has low vapor pressure, low toxicity, high thermal and electrical conductivities, and thus has shown a great potential for smart material applications. For such applications, EGaIn is maintained above its melting point, below which it undergoes solidification and phase separation. A scientific understanding of the structural and compositional evolution during thermal cycling could help further assess the application range of low-melting-point fusible alloys. Here, we use an integrated suite of cryogenically-enabled advanced microscopy & microanalysis to better understand phase separation and (re)mixing processes in EGaIn. We reveal an overlooked thermal-stimulus-response behaviour for frozen mesoscale EGaIn at cryogenic temperatures, with a sudden volume expansion observed during in-situ heat-cycling, associated with the immiscibility between Ga and In during cooling and the formation of metastable Ga phases. These results emphasize the importance of the kinetics of rejuvenation, and open new paths for EGaIn as a self-healing material.

Bimetallic nanoparticles are often superior candidates for a wide range of technological and biomedical applications, thanks to their enhanced catalytic, optical, and magnetic properties, which are often better than their monometallic counterparts. Most of their properties strongly depend on their chemical composition, crystallographic structure, and phase distribution. However, little is known of how their crystal structure, on the nanoscale, transforms over time at elevated temperatures, even though this knowledge is highly relevant in case nanoparticles are used in, e.g., high-temperature catalysis. Au-Fe is a promising bimetallic system where the low-cost and magnetic Fe is combined with catalytically active and plasmonic Au. Here, we report on the in situ temporal evolution of the crystalline ordering in Au-Fe nanoparticles, obtained from a modern laser ablation in liquids synthesis. Our in-depth analysis, complemented by dedicated atomistic simulations, includes a detailed structural characterization by X-ray diffraction and transmission electron microscopy as well as atom probe tomography to reveal elemental distributions down to a single atom resolution. We show that the Au-Fe nanoparticles initially exhibit highly complex internal nested nanostructures with a wide range of compositions, phase distributions, and size-depended microstrains. The elevated temperature induces a diffusion-controlled recrystallization and phase merging, resulting in the formation of a single face-centered-cubic ultrastructure in contact with a body-centered cubic phase, which demonstrates the metastability of these structures. Uncovering these unique nanostructures with nested features could be highly attractive from a fundamental viewpoint as they could give further insights into the nanoparticle formation mechanism under non-equilibrium conditions.

Analyzing porous (nano)materials by the atom probe tomography has been notoriously difficult. The electrostatic pressure intensifies stress at voids which results in premature failure of the specimen, and the electrostatic field distribution near voids lead to aberrations that are difficult to predict. Here we propose a new encapsulating method for a porous sample using a low-melting-point Bi-In-Sn alloy, known as Fields metal. As a model porous sample, we used single-crystalline wustite following direct hydrogen-reduced into iron. The complete encapsulation is performed using in-situ heating on the stage of the scanning-electron microscope up to approx. 70 Celsius. No visible corrosion nor dissolution of the sample occurred. Subsequently specimens are shaped by focused ion beam milling under cryogenic conditions at -190 Celsius. The proposed approach is versatile, can be applied to provide good quality atom probe datasets from microporous materials.

With 1.85 billion tons produced per year, steel is the most important material class in terms of volume and environmental impact. While steel is a sustainability enabler, for instance through lightweight design, magnetic devices, and efficient turbines, its primary production is not. For 3000 years, iron has been reduced from ores using carbon. Today 2.1 tons CO2 are produced per ton of steel, causing 30% of the global CO2 emissions in the manufacturing sector, which translates to 6.5% of the global CO2 emissions. These numbers qualify iron- and steel-making as the largest single industrial greenhouse gas emission source. The envisaged future industrial route to mitigate these CO2 emissions targets green hydrogen as a reductant. Although this reaction has been studied for decades, its kinetics is not well understood, particularly during the wustite reduction step which is dramatically slower than the hematite reduction. Many rate-limiting factors of this reaction are set by the micro- and nanostructure as well as the local chemistry of the ores. Their quantification allows knowledge-driven ore preparation and process optimization to make the hydrogen-based reduction of iron ores commercially viable, enabling the required massive CO2 mitigation to ease global warming. Here, we report on a multi-scale structure and composition analysis of iron reduced from hematite with pure H2, reaching down to near-atomic scale.

This study focuses on the synthesis of FeRh nanoparticles via pulsed laser ablation in liquid and on controlling the oxidation of the synthesized nanoparticles. Formation of monomodal {\gamma}-FeRh nanoparticles was confirmed by transmission electron microscopy (TEM) and their composition confirmed by atom probe tomography (APT). On these particles, three major contributors to oxidation were analysed: 1) dissolved oxygen in the organic solvents, 2) the bound oxygen in the solvent and 3) oxygen in the atmosphere above the solvent. The decrease of oxidation for optimized ablation conditions was confirmed through energy-dispersive X-ray (EDX) and M\"ossbauer spectroscopy. Furthermore, the time dependence of oxidation was monitored for dried FeRh nanoparticles powders using ferromagnetic resonance spectroscopy (FMR). By magnetophoretic separation, B2-FeRh nanoparticles could be extracted from the solution and characteristic differences of nanostrand formation between {\gamma}-FeRh and B2-FeRh nanoparticles were observed.

Imaging of liquids and cryogenic biological materials by electron microscopy has been recently enabled by innovative approaches for specimen preparation and the fast development of optimised instruments for cryo-enabled electron microscopy (cryo-EM). Yet, Cryo-EM typically lacks advanced analytical capabilities, in particular for light elements. With the development of protocols for frozen wet specimen preparation, atom probe tomography (APT) could advantageously complement insights gained by cryo-EM. Here, we report on different approaches that have been recently proposed to enable the analysis of relatively large volumes of frozen liquids from either a flat substrate or the fractured surface of a wire. Both allowed for analysing water ice layers which are several microns thick consisting of pure water, pure heavy-water and aqueous solutions. We discuss the merits of both approaches, and prospects for further developments in this area. Preliminary results raise numerous questions, in part concerning the physics underpinning field evaporation. We discuss these aspects and lay out some of the challenges regarding the APT analysis of frozen liquids., Comment: submitted for publication assocaited to the APT&M 2020 conference

Transmission electron microscopy has undergone a revolution in recent years with the possibility to perform routine cryo-imaging of biological materials and (bio)chemical systems, as well as the possibility to image liquids via dedicated reaction cells or graphene-sandwiching. These approaches however typically require imaging a large number of specimens and reconstructing an average representation and often lack analytical capabilities. Here, using atom probe tomography we provide atom-by-atom analyses of frozen liquids and analytical sub-nanometre three dimensional reconstructions. The analyzed ice is in contact with, and embedded within, nanoporous gold (NPG). We report the first such data on 2-3 microns thick layers of ice formed from both high purity deuterated water and a solution of 50mM NaCl in high purity deuterated water. We present a specimen preparation strategy that uses a NPG film and, additionally, we report on an analysis of the interface between nanoporous gold and frozen salt water solution with an apparent trend in the Na and Cl concentrations across the interface. We explore a range of experimental parameters to show that the atom probe analyses of bulk aqueous specimens come with their own special challenges and discuss physical processes that may produce the observed phenomena. Our study demonstrates the viability of using frozen water as a carrier for near-atomic scale analysis of objects in solution by atom probe tomography.