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Deep-pelagic fishes are among the most abundant vertebrates on Earth. They play a critical role in sequestering carbon, providing prey for harvestable fishing stocks and linking oceanic layers and trophic levels. However, knowledge of these fishes is scarce and fragmented, hampering the ability of both the scientific community and stakeholders to address them effectively. While modelling approaches incorporating these organisms have advanced, they often oversimplify their functional and ecological diversity, potentially leading to misconceptions. To address these gaps, this synthesis examines the biodiversity and ecology of global deep-pelagic fishes. We review pelagic ecosystem classifications and propose a new semantic framework for deep-pelagic fishes. We evaluate different sampling methods, detailing their strengths, limitations and complementarities. We provide an assessment of the world's deep-pelagic fishes comprising 1554 species, highlighting major groups and discussing regional variability. By describing their morphological, behavioural and ecological diversity, we show that these organisms are far from homogeneous. Building on this, we call for a more realistic approach to the ecology of deep-pelagic fishes transitioning between very different ecological niches during diel vertical migrations. To facilitate this, we introduce the concept of 'diel-modulated realised niche' and propose a conceptual model synthesising the multiple drivers responsible for such transitions., (© 2024 John Wiley & Sons Ltd.)

It is commonly assumed that beach seining (BS) is more sustainable than bottom trawling because it involves non-motorized operations and limited fishing power. However, no scientific evidence supports this assumption. To address this gap, we evaluated the impact of beach seining, taking a small-scale shrimp fishery in northeast Brazil. Data collected monthly from December 2016 to November 2017 and in literature, were assessed (BS 31,001 individuals, 119 species, 37 families, and 19 orders; BT 6,031 individuals, 58 species, 20 families, and 14 orders). Beach seining demonstrated a lower proportion of bycatch (BS 1:2.3; BT 1:3.2), higher total shrimp catch (BS 87.2 t; BT 65 t), and greater species diversity than bottom trawling catches (BS 119; BT 58). Other aspects were closer associated with bottom trawling, such as the composition of dominant families (Sciaenidae and Pristigasteridae), the proportion of rare species (BS 30%; BT 24%) juveniles (BS 11g; BT 13g), the risk of species extinction, and the composition of ecological guilds. Despite their social significance, both fishing gears showed similar ecological indicators and adverse effects. The findings establish that the ecological concerns related to the impact of bottom trawling are also applicable to beach seine.

The yellowfin tuna is a very abundant tropical tuna species in the western equatorial Atlantic Ocean and an important fishery resource for the Brazilian tuna fleet. In this study we performed stable isotope analysis to better understand the spatial trophodynamics and dietary changes in yellowfin tuna around two insular marine protected areas in Brazil. A total of 65 yellowfin tuna specimens measuring between 47 and 138 cm LT (total length) were sampled around the archipelagos of Fernando de Noronha (FNA; n = 34) and Saint Peter and Saint Paul (SPSPA; n = 31) between July 2018 and September 2019. Bayesian mixing models and generalized additive models were used to investigate the contributions of four different prey items (zooplankton, cephalopods, fish larvae, and flying fish) to yellowfin tuna diet in each area and their potential changes in relation to predator growth. The four prey items were found to have different overall contributions between the two studied areas, with zooplankton being the most important prey in FNA, whereas flying fish was the most relevant prey to the species' diet in SPSPA. Significant changes in the species diet by size were also found, with fish smaller than 90 cm (TL) having a more generalist diet and larger animals relying more on consuming larger and more nutritious prey (i.e., flying fish). Our results suggest that these two marine protected areas play an important role in ocean dynamics, providing important and different foraging grounds for the development of this predator species., (© 2024 Fisheries Society of the British Isles.)

Ocean dynamics initiate the structure of nutrient income driving primary producers, and these, in turn, shape the distribution of subsequent trophic levels until the whole pelagic community reflects the physicochemical structure of the ocean. Despite the importance of bottom-up structuring in pelagic ecosystems, fine-scale studies of biophysical interactions along depth are scarce and challenging. To improve our understanding of such relationships, we analyzed the vertical structure of key oceanographic variables along with the distribution of acoustic biomass from multi-frequency acoustic data (38, 70, and 120 kHz) as a reference for pelagic fauna. In addition, we took advantage of species distribution databases collected at the same time to provide further interpretation. The study was performed in the Southwestern Tropical Atlantic of northeast Brazil in spring 2015 and autumn 2017, periods representative of canonical spring and autumn conditions in terms of thermohaline structure and current dynamics. We show that chlorophyll-a, oxygen, current, and stratification are important drivers for the distribution of sound scattering biota but that their relative importance depends on the area, the depth range, and the diel cycle. Prominent sound scattering layers (SSLs) in the epipelagic layer were associated with strong stratification and subsurface chlorophyll-a maximum. In areas where chlorophyll-a maxima were deeper than the peak of stratifications, SSLs were more correlated with stratification than subsurface chlorophyll maxima. Dissolved oxygen seems to be a driver in locations where lower oxygen concentration occurs in the subsurface. Finally, our results suggest that organisms seem to avoid strong currents core. However, future works are needed to better understand the role of currents on the vertical distribution of organisms., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Assunção et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

The connection between epipelagic and deep-sea mesopelagic realms controls a variety of ecosystem processes including oceanic carbon storage and the provision of harvestable fish stocks. So far, these two layers have been mostly addressed in isolation and the ways they connect remain poorly understood. Furthermore, both systems are affected by climate change, exploitation of resources, and increasing pervasion of pollutants. Here we use bulk isotopes of δ 13 C and δ 15 N of 60 ecosystem components to evaluate the trophic linkage between epipelagic and mesopelagic ecosystems in warm oligotrophic waters. Additionally, we we conducted a comparison of isotopic niche sizes and overlaps across multiple species to evaluate how environmental gradients between epipelagic and mesopelagic ecosystems shape ecological patterns of resource use and competition between species. Our database comprises siphonophores, crustaceans, cephalopods, salpas, fishes, and seabirds. It also includes five zooplankton size classes, two groups of fish larvae, and particulate organic matter collected at different depths. Through this wide taxonomic and trophic variety of epipelagic and mesopelagic species, we show that pelagic species access resources originating from different food sources, mostly autotrophic-based (epipelagics) and microbial heterotrophic-based (mesopelagics). This leads to a sharp trophic dissimilarity between vertical layers. Additionally, we show that trophic specialization increases in deep-sea species and argue that food availability and environmental stability are among the main drivers of this pattern. Finally, we discuss how the ecological traits of pelagic species highlighted in this study can respond to human impacts and increase their vulnerability in the Anthropocene., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Plastic debris is ubiquitous in the hydrosphere. Yet, we lack an understanding of contamination among deep-sea species and primarily how each trait can influence microplastic intake. We investigated microplastic contamination in the digestive tract of hyper-abundant mesopelagic lanternfishes (n = 364 individuals) from the Southwestern Tropical Atlantic, captured from 90 to 1000 m depth. Overall, microplastics were detected in most individuals analysed (frequency of occurrence = 68 %). Large microplastics, mostly of a filamentous shape were the most frequent, followed by smaller fragments and foams. Microplastics made of high-density polymers (PET, PVC, PA, SBR rubber) were more prevalent than low-density ones (PE, EVA and PBD rubber), especially under deeper layers. Larger microplastics were detected in lanternfishes captured off the northeastern Brazilian coast (mean 0.88 ± SE 0.06 mm) compared to those from around the Rocas Atoll and Fernando de Noronha Archipelago (0.70 ± 0.07 mm; p≤ 0.05), ∼350 km from the continent. Moreover, lanternfishes that migrate from the upper mesopelagic (200-500 m) to the epipelagic layers (<200 m) had simultaneously the highest intake and the smallest particles (1.65 ± 0.17 particles individual -1 and 0.55 ± 0.07 mm; p≤ 0.05). Biological mediated transport of microplastics from the epipelagic to the mesopelagic waters was evinced, but fishes foraging in shallower layers had the lowest intake (1.11 ± 0.10 part. ind. -1 ; p≤ 0.05). Furthermore, the jaw length was positively associated with an increment in microplastic intake (Incidence Rate Ratio = 1.1; p≤ 0.05). The lanternfishes that preferably prey upon fish larvae are more prone to microplastic intake than their counterparts, which forage mostly on crustaceans and gelatinous zooplankton (p≤ 0.05)., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Here we report on new data on the occurrence and distribution of rare deep-sea fishes (Teleostei) collected from off north-eastern Brazil, including seamounts and oceanic islands of the Fernando de Noronha Ridge (Rocas Atoll and Fernando de Noronha Archipelago). Collections were made by the French RV Antea during the ABRACOS (Acoustics along the BRAzilian COaSt) expeditions between 29 September and 21 October 2015, and 9 April and 10 May 2017. Occurrences of Photostylus pycnopterus (Alepocephalidae), Gigantura chuni (Giganturidae), Ahliesaurus berryi (Notosudidae), Benthalbella infans, Rosenblattichthys hubbsi, Scopelarchoides danae (Scopelarchidae), Scopelengys tristis (Neoscopelidae), Zu cristatus (Trachipteridae), Stylephorus chordatus (Stylephoridae) and Pseudoscopelus cordilluminatus (Chiasmodontidae) are reported for the first time or confirmed in the Brazilian Exclusive Economic Zone. Photostylus pycnopterus and G. chuni are also recorded for the first time in the western South Atlantic, whereas records of P. cordilluminatus are the first in the western Atlantic. Other records of rare species of those families are also reported and discussed., (© 2022 Fisheries Society of the British Isles.)

Microplastics (MPs; <5 mm) are a macro issue recognised worldwide as a threat to biodiversity and ecosystems. Widely distributed in marine ecosystems, MPs have already been found in the deep-sea environment. However, there is little information on ecological mechanisms driving MP uptake by deep-sea species. For the first time, this study generates data on MP contamination in mesopelagic fishes from the Southwestern Tropical Atlantic (SWTA) to help understand the deep-sea contamination patterns. An alkaline digestion protocol was applied to extract MPs from the digestive tract of four mesopelagic fish species: Argyropelecus sladeni, Sternoptyx diaphana (Sternoptychidae), Diaphus brachycephalus, and Hygophum taaningi (Myctophidae). A total of 213 particles were recovered from 170 specimens, and MPs were found in 67% of the specimens. Fibres were the most common shape found in all species, whereas polyamide, polyethylene, and polyethylene terephthalate were the most frequent polymers. The most contaminated species was A. sladeni (93%), and the least contaminated was S. diaphana (45%). Interestingly, individuals caught in the lower mesopelagic zone (500-1000 m depth) were less contaminated with MPs than those captured in the upper mesopelagic layer (200-500 m). Our results highlight significant contamination levels and reveal the influence of mesopelagic fishes on MPs transport in the deep waters of the SWTA., (Copyright © 2022 Elsevier Ltd. All rights reserved.)

Microplastics are a relevant environmental concern in marine ecosystems due to their ubiquity. However, knowledge on their dispersion patterns within the ocean basin and the interaction with biota are scarce and mostly limited to surface waters. This study investigated microplastic contamination in two species of deep-sea cephalopods from the southwestern Atlantic with different ecological behaviour: the vampire squid (Vampyroteuthis infernalis) and the midwater squid (Abralia veranyi). Microplastic contaminated most of the evaluated specimens. V. infernalis showed higher levels of contamination (9.58 ± 8.25 particles individual -1 ; p < 0.05) than A. veranyi (2.37 ± 2.13 part. ind. -1 ), likely due to the feeding strategy of V. infernalis as a faecal pellets feeder. The size of extracted microplastics was inversely proportional to the depth of foraging. The microplastics were highly heterogeneous in composition (shape, colour and polymer type). Our results provide information regarding microplastic interaction with deep-sea organisms and evidence of the biological influence in the microplastic sinking mechanism., (Copyright © 2022 Elsevier Ltd. All rights reserved.)

Mesopelagic fishes are numerically the most important vertebrate group of all world's oceans. While these species are increasingly threatened by anthropogenic activities, basic biological knowledge is still lacking. For instance, major uncertainties remain on the behaviour, ecology, and thus functional roles of mesopelagic micronektivores, particularly regarding their interactions with physicochemical features. Here, we examine the trophic ecology, habitat, and migratory behaviour of the viperfish (Chauliodus sloani)-a poorly known and abundant deep-sea species-to further understand the ecology and thus functional role of mesopelagic micronektivores. Moreover, we explore how physical drivers may affect these features and how these relationships are likely to change over large oceanic areas. The viperfish heavily preys on epipelagic migrant species, especially myctophids, and presents spatial and trophic ontogenetic shifts. Temperature restricts its vertical distribution. Therefore, its trophodynamics, migratory behaviour, and functional roles are expected to be modulated by the latitudinal change in temperature. For instance, in most tropical regions the viperfish stay full-time feeding, excreting, and serving as prey (e.g. for bathypelagic predators) at deep layers. On the contrary, in temperate regions, the viperfish ascend to superficial waters where they trophically interact with epipelagic predators and may release carbon where its remineralization is the greatest.

This study reports on the first record of the intermediate scabbardfish Aphanopus intermedius in the western South Atlantic Ocean, based on a single specimen 725 mm standard length collected between 0 and 610 m depth around Rocas Atoll off north-eastern Brazil. Measurements and counts are provided and compared with those available in the literature., (© 2018 The Fisheries Society of the British Isles.)