Search

Background: The stone-dwelling genus Blastococcus plays a key role in ecosystems facing extreme conditions such as drought, salinity, alkalinity, and heavy metal contamination. Despite its ecological significance, little is known about the genomic factors underpinning its adaptability and resilience in such harsh environments. This study investigates the genomic basis of Blastococcus's adaptability within its specific microniches, offering insights into its potential for biotechnological applications. Results: Comprehensive pangenome analysis revealed that Blastococcus possesses a highly dynamic genetic composition, characterized by a small core genome and a large accessory genome, indicating significant genomic plasticity. Ecogenomic assessments highlighted the genus's capabilities in substrate degradation, nutrient transport, and stress tolerance, particularly on stone surfaces and archaeological sites. The strains also exhibited plant growth-promoting traits, enhanced heavy metal resistance, and the ability to degrade environmental pollutants, positioning Blastococcus as a candidate for sustainable agriculture and bioremediation. Interestingly, no correlation was found between the ecological or plant growth-promoting traits (PGPR) of the strains and their isolation source, suggesting that these traits are not linked to their specific environments. Conclusions: This research highlights the ecological and biotechnological potential of Blastococcus species in ecosystem health, soil fertility improvement, and stress mitigation strategies. It calls for further studies on the adaptation mechanisms of the genus, emphasizing the need to validate these findings through wet lab experiments. This study enhances our understanding of microbial ecology in extreme environments and supports the use of Blastococcus in environmental management, particularly in soil remediation and sustainable agricultural practices. [ABSTRACT FROM AUTHOR]

Relative to its size, tropical Asia is likely to be the richest region in terms of biodiversity. However, the factors of species diversity formation and maintenance in Southeast (SE) Asia and neighboring regions remain poorly understood. Here we infer the evolutionary relationships within psilodercid spiders by incorporating fossil information into a robust, unprecedentedly complete species‐level phylogeny of 202 extant species to explore potential abiotic drivers and ecological features underlying their stable diversification history. The combination of extant and extinct historical biogeographic data indicates that in situ speciation is the predominant form of diversification in tropical Asia but diverse Cretaceous psilodercids in Myanmar ambers were replaced by other biogeographical lineages during the northward movements of the Burma Terrane. Furthermore, our diversification analyses show no diversification rate changes through time and across geographic space in this family, but the genus Althepus displays an accelerated rate of species diversification driven by the remarkable expansion of leg length. Trait evolution analysis shows that ecological trait divergence contributes to the diversification and accumulation of tropical spiders by facilitating species coexistence. These findings provide empirical evidence that the ecological trait divergence over evolutionary time scales is key to forming species diversity hotspots in SE Asia. Thus, this study integrating molecular evidence and paleontological interpretation provides a new framework for understanding the evolution of tropical species diversity. [ABSTRACT FROM AUTHOR]

Abstract Insect coloration has evolved in response to multiple pressures, and in Odonata (dragonflies and damselflies) a body of work supports a role of wing color in a variety of visual signals and potentially in thermoregulation. Previous efforts have focused primarily on melanistic coloration even though wings are often multicolored, and there has yet to be comprehensive comparative analyses of wing color across broad geographic regions and phylogenetic groups. Percher vs. flier flight-style, a trait with thermoregulatory and signaling consequences, has not yet been studied with regard to color. We used a new color clustering approach to quantify color across a dataset of over 8,000 odonate wing images representing 343 Nearctic species. We then utilized phylogenetically informed Bayesian zero-inflated mixture models to test how color varies with mean ambient temperature, body size, sex and flight-style. We found that wing coloration clustered into two groups across all specimens - light brown-yellow and black-dark brown - with black-dark brown being a much more cohesive grouping. Male perchers have a greater proportion of black-dark brown color on their wings as do species with longer wings. In colder climates, odonates were more likely to have black-dark brown color present, but we found no relationship between the proportion of black and temperature. Light brown-yellow showed similar scaling with wing length, but no relationship with temperature. Our results suggest that black-dark brown coloration may have a limited role in thermoregulation, while light brown-yellow does not have such a role. We also find that the odonate sexes are divergent in wing color in percher species only, suggesting a strong role for color in signaling in more territorial males. Our research contributes to an understanding of complex interactions driving ecological and evolutionary dynamics of color in animals.

In the second half of the 20th century, through the efforts of scientists from many countries, a coherent theory of natural plague foci (sylvatic plague) was formulated, attempted to describe the history of the origin and evolution of the causative agent of plague infection, the microbeYersinia pestis. But the accumulated knowledge in this regard remained extremely limited. Envisioned by the modern phylogenetics, the methods of phylogenetic constructions in the pregenomic time were rather primitive, “manual”, characteristic of early empirico-intuitive Haeckel phylogenetics. Since the beginning of the 21st century, the introduction of genomic methodologies in the study of the plague pathogen allowed to detail the intraspecific diversity (subspecies, genovariants) of this particularly dangerous pathogen at the level of geographical and local populations (individual natural foci) around the world and to bring the diagnostics and description of intraspecific diversity to a high degree of perfection. Two important discoveries were made. First, the direct ancestor of the plague microbe was reliably established, it turned out to be the causative agent of intestinal infection — Far Eastern scarlet-like fever (Y. pseudotuberculosis0:1b). Secondly, the evolutionary youth of the plague pathogen was shown, the “molecular clock” showed the time of its divergence from the ancestral population no earlier than 30 thousand years ago. Thus, the root of the phylogenetic tree ofY. pestiswas fully characterized. Nevertheless, molecular genetic (MG) achievements do not yet allow to reveal the secrets of its phylogeny, i.e. the origin and sequence of world expansion. The most important reason is the high dependence of the MG of phylogeny reconstructions on the choice of evolutionary model for the analyzed characters: the model of neutral evolution is traditionally accepted, but its adequacy in relation toY. pestisphylogeny is questioned by many well-known ecological (in the broad sense) facts. At the same time, MG achievements contributed to the creation of an ecological (ECO) approach based on the provisions of the theory of natural plague foci in an updated version, according to which the plague pathogen is an evolutionarily young pathogen descended from a psychrophilic pseudotuberculous ancestor. The presumptive ECO scenario has no obvious natural-scientific and historical contradictions and can serve as a null hypothesis for improving the MG methodology of phylogenetic constructions for plague and other similar microbes. It is suggested that the creation of a real phylogeny of the plague microbe is possible only based on integration of MG and ECO approaches.

Changes in phenology are a common response to climate change, but their impact on population dynamics is often ambiguous and at‐risk species are omitted from most analyses.We assessed the relationship between change in abundance and change in phenology for 114 butterfly populations of 31 at‐risk species from five families in 10 US states. We used data from Pollard‐walk and similar monitoring programmes for which count data were collected on multiple occasions per year. We also collected information from managers on site‐level management interventions.To estimate abundance, we first fit separate smoothing splines for each species at each site. Yearly abundance was estimated as the area under the activity curve for that year, and from this, we estimated abundance trends over the period for which we had population data. Phenological shifts were measured as the changes in median activity date, beginning of flight season, duration of flight season and phenological constancy (negative of the magnitude of trends in median activity date). We also evaluated the association of ecological traits (voltinism, diet breadth, position within geographic range, ecoregion, overwintering stage and seasonality) and management (proportion of years with interventions) with trends in abundance and in phenology.Across all populations, the estimated trend in abundance was −0.085, equivalent to an 8.1% decline/year. Positive trends in abundance were associated with smaller shifts in the median flight date (higher constancy). We also found strong associations between trends in abundance and management interventions, with increased management associated with increasing abundance trends. In general, ecological traits were not strongly associated with trends in phenology or trends in abundance.Synthesis and applications: Populations with less phenological constancy are more likely to be rapidly declining and populations with more frequent management interventions are increasing. These results suggest that one key outcome of management interventions may be to mitigate some of the impacts of climate change, which in turn may contribute to higher population growth. These results also imply that managers may need to alter the timing of appropriate management to synchronize with activities of at‐risk species as species shift their phenology. [ABSTRACT FROM AUTHOR]

The island biogeography theory predicts that species richness in islands and island-like systems is the ultimate result of island isolation and area. Species with high dispersal capabilities are predicted to be less affected by these factors because of their capacity to move more efficiently between islands or habitats, and here we test this idea in bats, the only mammals capable of flight. We conducted mist net and acoustic surveys across 21 islands in the San Juan Archipelago (Washington State, United States) and adjacent northwest mainland to: (i) investigate the effects of island area, distance from mainland, and habitat on bat diversity; and (ii) evaluate whether differences in morphological (body mass, forearm length, wing loading) and ecological (dietary niche breadth, foraging guild) traits among species influence their prevalence across islands. We found that island size strongly influenced patterns of species richness, with larger islands having a greater number of bat species. However, neither island distance from mainland nor any measure of habitat availability was a significant predictor of species richness at the scale of this study. Additionally, we found that dietary niche breadth, as opposed to any morphological trait, best predicted the prevalence of species across the islands. Our results suggest that species with more specialized diets may be more vulnerable to habitat fragmentation, and provide insight into how geographic and ecological factors affect the diversity of insular bat communities, adding to growing knowledge about the role of species traits as mediators of their responses to large-scale landscape structure. [ABSTRACT FROM AUTHOR]

Unsustainable wildlife consumption and illegal wildlife trade (IWT) threaten biodiversity worldwide. Although publicly accessible data sets are increasingly used to generate insights into IWT, little is known about their potential bias. We compared three typical and temporally corresponding data sets (4204 court verdicts, 926 seizure news reports, and 219 bird market surveys) on traded birds native to China and evaluated their possible species biases. Specifically, we evaluated bias and completeness of sampling for species richness, phylogeny, conservation status, spatial distribution, and life‐history characteristics among the three data sets when determining patterns of illegal trade. Court verdicts contained the largest species richness. In bird market surveys and seizure news reports, phylogenetic clustering was greater than that in court verdicts, where songbird species (i.e., Passeriformes) were detected in higher proportions in market surveys. The seizure news data set contained the highest proportion of species of high conservation priority but the lowest species coverage. Across the country, all data sets consistently reported relatively high species richness in south and southwest regions, but markets revealed a northern geographic bias. The species composition in court verdicts and markets also exhibited distinct geographical patterns. There was significant ecological trait bias when we modeled whether a bird species is traded in the market. Our regression model suggested that species with small body masses, large geographical ranges, and a preference for anthropogenic habitats and those that are not nationally protected were more likely to be traded illegally. The species biases we found emphasize the need to know the constraints of each data set so that they can optimally inform strategies to combat IWT. [ABSTRACT FROM AUTHOR]

Birds are sensitive to environmental changes and can drive range shifts rapidly due to their high mobility. Though previous studies have examined the associations between species traits and range shifts, whether species traits could still explain heterogeneity in shift directions remains poorly explored. Here, we compiled new bird records of China from 2000 to 2019 and analyzed species traits associated with apparent shift directions. We collected 350 provincial-level new records of birds belonging to 67 families of 22 orders. Of these, 32 are threatened, with 3 critically endangered, 11 endangered, and 18 vulnerable. Provinces in western China (i.e., Yunnan and Xizang) had relatively higher species richness of new recorded birds; this pattern was also reflected in the phylogenetic diversity we observed. In addition, provinces in northern China (i.e., Tianjin, Shandong, and Beijing) had relatively higher richness-controlled phylogenetic diversity. Phylogenetic overdispersion of new recorded bird communities was observed in 61.29% of provinces (19 of 31). The main shift directions indicated by new bird records were northward (with nearly 50% of birds moving NW, N and NE). Migration, hand-wing index (HWI), body mass, and range size are the four key factors that most significantly influence the shift directions in bird species, suggesting that bird movement toward newly suitable areas varies with species-specific traits. Together, these results demonstrate the importance of considering species ecological traits when predicting shift directions of birds. [ABSTRACT FROM AUTHOR]

Nearly 50 years after the ground-breaking isolation of the primary Comptonia peregrina microsymbiont under axenic conditions, efforts to isolate a substantial number of Protofrankia and Frankia strains continue with enduring challenges and complexities. This study aimed to streamline genomic insights through comparative and predictive tools to extract traits crucial for isolating specific Frankia in axenic conditions. Pangenome analysis unveiled significant genetic diversity, suggesting untapped potential for cultivation strategies. Shared metabolic strategies in cellular components, central metabolic pathways, and resource acquisition traits offered promising avenues for cultivation. Ecological trait extraction indicated that most uncultured strains exhibit no apparent barriers to axenic growth. Despite ongoing challenges, potential caveats, and errors that could bias predictive analyses, this study provides a nuanced perspective. It highlights potential breakthroughs and guides refined cultivation strategies for these yet-uncultured strains. We advocate for tailored media formulations enriched with simple carbon sources in aerobic environments, with atmospheric nitrogen optionally sufficient to minimize contamination risks. Temperature adjustments should align with strain preferences--28-29°C for Frankia and 32-35°C for Protofrankia--while maintaining an alkaline pH. Given potential extended incubation periods (predicted doubling times ranging from 3.26 to 9.60 days, possibly up to 21.98 days), patience and rigorous contamination monitoring are crucial for optimizing cultivation conditions. [ABSTRACT FROM AUTHOR]

Public donations are an important form of fundraising for zoos and are used to support conservation activities. Understanding what influences zoo animal sponsorship by the public is crucial if zoos are to optimize strategies for increasing income from sponsors. Using sponsorship data obtained from seven diverse zoos within the UK, we used a phylogenetically informed approach to investigate predictors of the number of sponsors a species receives. We found no support for an effect of body mass, conservation status, solitary versus group housing, phylogenetic distance from humans, daily activity patterns, or the diet of the species on the number of sponsors a species attracts. However, we found strong phylogenetic signal, suggesting that particular groups of animals attract disproportionate sponsorship attention (but the specific species within these groups is of limited importance). Moreover, we found support for species with common names that are found toward the start of the alphabet having more sponsors. This is likely driven by the common practice of listing species that can be sponsored in alphabetical order when presenting them to potential sponsors (with people being more likely to choose species near the start of a list). Interestingly, the lack of effect of body mass, phylogenetic distance, and conservation status contrast with previous work on non‐zoo conservation preferences, suggesting possible differences between motivations of zoo and non‐zoo conservation donors, or between animal sponsorship and other forms of conservation involvement. We suggest two strategies for maximizing sponsorship for zoo animals. If zoos manage sponsorship income as a collective pool then allowing sponsorship of a range of species within particularly well‐sponsored animal groups should improve uptake. Alternatively, if zoos allocate sponsorship income to the specific species sponsored, then funding may be effectively diverted to priority species simply by altering the order of lists of animals which can be sponsored. [ABSTRACT FROM AUTHOR]

Mosses are an early lineage of the plant kingdom, with around 13,000 species. Although an important part of biodiversity, providing crucial ecosystem services, many species are threatened with extinction. However, only circa 300 species have so far had their extinction risk evaluated globally for the IUCN Red List. Functional traits are known to help predict the extinction risk of species in other plant groups. In this study, a matrix of 15 functional traits was produced for 723 moss species from around the world to evaluate the potential of such predictability. Binary generalized linear models showed that monoicous species were more likely to be threatened than dioicous species, and the presence of a sporophyte (sexual reproduction), vegetative reproduction and an erect (straight) capsule instead of a pendent (immersed) one lowers the risk of species extinction. A longer capsule, seta and stem length, as well as broader substrate breadth, are indicative of species with a lower risk of extinction. The best-performing models fitted with few traits were able to predict extinction risks of species with good accuracy. These models applied to Data Deficient (DD) species proved how useful they may be to speed up the IUCN Red List assessment process while reducing the number of listed DD species, by selecting species most in need of a full, detailed assessment. Some traits tested in this study are a novelty in conservation research on mosses, opening new possibilities for future studies. The traits studied and the models presented here are a significant contribution to the knowledge of mosses at risk of extinction and will help to improve conservation efforts. [ABSTRACT FROM AUTHOR]

Understanding how human‐modified landscapes maintain biodiversity and provide ecosystem services is crucial for establishing conservation practices. Given that responses to land‐use are species‐specific, it is crucial to understand how land‐use changes may shape patterns of species diversity and persistence in human‐modified landscapes. Here, we used a comprehensive data set on bird distribution from the Brazilian Atlantic Forest to understand how species richness and individual occurrences of frugivorous bird species responded to land‐use spatial predictors and, subsequently, assess how ecological traits and phylogeny modulated these responses. Using Bayesian hierarchical modeling, we reveal that the richness of frugivorous birds was positively associated with the amount of native forest and negatively with both agriculture and pasture amount at the landscape scale. Conversely, the effect of these predictors on species occurrence and ecological traits was highly variable and presented a weak phylogenetic signal. Furthermore, land‐use homogenization (i.e., the conversion of forest to pasture or agriculture) led to pervasive consequences for forest‐dependent bird species, whereas several generalist species thrived in deforested areas, replacing those sensitive to habitat disturbances. [ABSTRACT FROM AUTHOR]

Fungi are an integral part of the nitrogen and phosphorus cycling in trophic networks, as they participate in biomass decomposition and facilitate plant nutrition through root symbioses. Nutrient content varies considerably between the main fungal habitats, such as soil, plant litter or decomposing dead wood, but there are also large differences within habitats. While some soils are heavily loaded with N, others are limited by N or P. One way in which nutrient availability can be reflected in fungi is their content in biomass. In this study, we determined the C, N, and P content (in dry mass) of fruiting bodies of 214 fungal species to inspect how phylogeny and membership in ecological guilds (soil saprotrophs, wood saprotrophs, and ectomycorrhizal fungi) affect the nutrient content of fungal biomass. The C content of fruiting bodies (415 ± 25 mg g–1) showed little variation (324–494 mg g–1), while the range of N (46 ± 20 mg g–1) and P (5.5 ± 3.0 mg g–1) contents was within one order of magnitude (8–103 mg g–1 and 1.0–18.9 mg g–1, respectively). Importantly, the N and P contents were significantly higher in the biomass of soil saprotrophic fungi compared to wood saprotrophic and ectomycorrhizal fungi. While the average C/N ratio in fungal biomass was 11.2, values exceeding 40 were recorded for some fungi living on dead wood, typically characterized by low N content. The N and P content of fungal mycelium also showed a significant phylogenetic signal, with differences in nutrient content being relatively low within species and genera of fungi. A strong correlation was found between N and P content in fungal biomass, while the correlation of N content and the N-containing fungal cell wall biopolymer—chitin showed only weak significance. The content of macronutrients in fungal biomass is influenced by the fungal life style and nutrient availability and is also limited by phylogeny. [ABSTRACT FROM AUTHOR]

Arthropod faunas have become impoverished in recent years in abundance as well as in diversity, but so far little evidence exists concerning spiders. In 2022, we repeated pitfall trap collections of spider assemblages completed 25 years previously in coastal dune habitats of the Hanstholm Reserve of National Park Thy, Denmark. Traps were placed approximately at the same spots, i.e. the habitats (white dune, grey dune, dry dune heathland, wet dune heathland, low pine plantation) were represented approximately as before. Contrary to most previous reports of insect decline, we found only weak evidence of reduction in abundance, but strong indications of reductions in faunistic value based on changes in ecological traits. Within the same period of spring and with the same number of traps, we collected 12% fewer spider individuals and 13% fewer species; rarefaction indicated that the lowered species richness was real. Species diversity had decreased and dominance increased. Changes in indices of ecological traits showed that the fauna had changed into decreased contribution of habitat specialists and species of restricted Danish distribution; the proportion of aeronauts had increased; the average body size had decreased. Indices of assemblage microclimatic niche positions and niche widths showed increased representation of shade and humidity loving species. Most of these changes were repeated in each of the habitats. Finally, we found evidence of a phenological shift towards activity earlier in spring in some species. Implications for insect conservation: We discuss possible management measures to counteract the observed trend towards reduced faunistic value. [ABSTRACT FROM AUTHOR]

Birds are sensitive to environmental changes and can drive range shifts rapidly due to their high mobility. Though previous studies have examined the associations between species traits and range shifts, whether species traits could still explain heterogeneity in shift directions remains poorly explored. Here, we compiled new bird records of China from 2000 to 2019 and analyzed species traits associated with apparent shift directions. We collected 350 provincial-level new records of birds belonging to 67 families of 22 orders. Of these, 32 are threatened, with 3 critically endangered, 11 endangered, and 18 vulnerable. Provinces in western China (i.e., Yunnan and Xizang) had relatively higher species richness of new recorded birds; this pattern was also reflected in the phylogenetic diversity we observed. In addition, provinces in northern China (i.e., Tianjin, Shandong, and Beijing) had relatively higher richness-controlled phylogenetic diversity. Phylogenetic overdispersion of new recorded bird communities was observed in 61.29% of provinces (19 of 31). The main shift directions indicated by new bird records were northward (with nearly 50% of birds moving NW, N and NE). Migration, hand-wing index (HWI), body mass, and range size are the four key factors that most significantly influence the shift directions in bird species, suggesting that bird movement toward newly suitable areas varies with species-specific traits. Together, these results demonstrate the importance of considering species ecological traits when predicting shift directions of birds.

The environment is a continuous source of matter and energy, which dynamizes the adaptive processes of biological systems, so that these systems emerge, persist or are extinguished as a consequence of their reactions to the environment. This perspective, forged from classical physics, gives way to multiple ecological theories, with evolution being the most prominent one. In all these cases, information would be both dependent and subsequent to matter and energy. Thus, the emergence and dynamics of genetic material or ecological attributes such as abundance, richness or diversity depend mainly on the interaction of these two fundamental states. However, recent approaches from quantum physics and complexity views put forward the notion that information can be independent and prior to matter and energy, which allows us to see ecological processes from another perspective, i.e., as including complex biological systems as capable of showing emergent properties such as cognition. We proposed here a set of postulates and ideas that suggests how the ability to manipulate (internalize, integrate, store and generate) information can be developed by those systems, which would directly and non-randomly influence ecological attributes and their dynamics; i.e., how this property can possibly help replacing the notion of the environment as the ultimate cause of changes. Besides fully detailing the sources of knowledge and our rationale in this sense, we have also discussed how these thoughts and possibilities can be employed in devising better and more comprehensive approaches for biological conservation strategies. [ABSTRACT FROM AUTHOR]

Parthenium hysterophorus L. (Asteraceae), commonly known as famine weed in South Africa, is one of the most invasive weeds worldwide, accountable for losses to biodiversity, agriculture, the economy, and the health of livestock and human beings. The spread of this weed is not easy to manage or reverse. With globalization, trade, and human movement, it will continue to spread, allowing its range to expand into new areas. This weed has serious adverse effects on rangeland and agricultural crop production. Because of its unique characteristics, its invasiveness and competitive success rates are attributed to its high reproductive ability, fast growth rate, tolerance to environmental stresses, climate change adaptability, allelopathic potential, and unpalatability to animals. Parthenium hysterophorus dominates diverse habitats by spreading quickly as a contaminant of grain and other crop products and through farm machinery. It is widely distributed and has become problematic in various countries, including South Africa. It has successfully invaded several provinces in the country since its introduction in 1880. Since plant invasions are not universal, this study aimed to review research that has been conducted on the aggressive weed P. hysterophorus to understand the ecological characteristics that enable its successful establishment, the economic costs associated with its detrimental impacts, and to briefly assess knowledge gaps to improve its management strategies. [ABSTRACT FROM AUTHOR]

Ecological niche partitioning is crucial in reducing interspecific competition, fostering species coexistence, and preserving biodiversity. Our research, conducted in a hybrid mixed oak forest in Yushan, Jiangsu, China, focuses on Quercus acutissima, Q. variabilis, Q. fabri, and Q. serrata var. brevipetiolata. Using Point Pattern Analysis, we investigated the spatial relationships and ecological trait autocorrelation, including total carbon (TC), nitrogen (TN), phosphorus (TP), potassium (TK), and breast height diameter (DBH). Our findings show aggregated distribution patterns within the oak populations. The Inhomogeneous Poisson Point model highlights the impact of environmental heterogeneity on Q. variabilis, leading to distinct distribution patterns, while other species showed wider dispersion. This study reveals aggregated interspecific interactions, with a notable dispersal pattern between Q. acutissima and Q. variabilis. We observed significant variability in nutrient elements, indicating distinct nutrient dynamics and uptake processes. The variations in total carbon (TC), nitrogen (TN), phosphorus (TP), and potassium (TK) suggest distinct nutrient dynamics, with TK showing the highest variability. Despite variations in TC, TK, and TP, the species did not form distinct classes, suggesting overlapping nutritional strategies and environmental adaptations. Furthermore, spatial autocorrelation analysis indicates strong positive correlations for DBH, TC, and TP, whereas TK and TN correlations are non-significant. The results suggest habitat filtering as a key driver in intraspecific relationships, with a finer spatial scale of ecological niche division through TC and TP, which is crucial for maintaining coexistence among these oak species. [ABSTRACT FROM AUTHOR]

Reef fisheries are multispecific and employ a variety of fishing gears across marine environments, even in remote areas. This intricate and multifaceted nature of reef fisheries is often overlooked in management strategies, leading to global management failures. In Brazil, information about reef fisheries is often scarce and scattered. This stems from inadequate policies and an unrecognized societal value of reef fisheries. Here, we combine nationwide reef fish landing data (1950–2015) with an extensive literature review on Brazilian reef fisheries. We explore temporal and spatial patterns in total landings, species traits, functional diversity and composition to understand the current scenario, identify drivers of change and highlight information gaps. Brazilian reef fisheries rapidly increased in landing volume, number of targeted species and exploited traits in the 1980's, despite mainly targeting carnivorous fish (groupers, snappers, jacks and trevallies). Exploited functional space increased over time, mainly due to the incorporation of smaller and lower-trophic level species that gradually were added to the pool of fished species. Local and international markets have been the main drivers behind these patterns, while subsistence fishing is marginal. Lack of proper management and enforcement of existing regulations have led to population declines, dwindling total catches since the early 2000's, and numerous threatened species. Artisanal fishing accounts for the majority of catches, raising concern on the social impacts of degraded reef fisheries. We highlight the urgent need for adequate fishing statistics, and the use/application of science-based management and policy actions to secure productive fisheries and healthy reef ecosystems in Brazil. [ABSTRACT FROM AUTHOR]

Species declines and extinctions characterize the Anthropocene. Determining species vulnerability to decline, and where and how to mitigate threats, are paramount for effective conservation. We hypothesized that species with shared ecological traits also share threats, and therefore may experience similar population trends. Here, we used a Bayesian modeling framework to test whether phylogeny, geography, and 22 ecological traits predict regional population trends for 380 North American bird species. Groups like blackbirds, warblers, and shorebirds, as well as species occupying Bird Conservation Regions at more extreme latitudes in North America, exhibited negative population trends; whereas groups such as ducks, raptors, and waders, as well as species occupying more inland Bird Conservation Regions, exhibited positive trends. Specifically, we found that in addition to phylogeny and breeding geography, multiple ecological traits contributed to explaining variation in regional population trends for North American birds. Furthermore, we found that regional trends and the relative effects of migration distance, phylogeny, and geography differ between shorebirds, songbirds, and waterbirds. Our work provides evidence that multiple ecological traits correlate with North American bird population trends, but that the individual effects of these ecological traits in predicting population trends often vary between different groups of birds. Moreover, our results reinforce the notion that variation in avian population trends is controlled by more than phylogeny and geography, where closely related species within one region can show unique population trends due to differences in their ecological traits. We recommend that regional conservation plans, i.e. one-size-fits-all plans, be implemented only for bird groups with population trends under strong phylogenetic or geographic controls. We underscore the need to develop species-specific research and management strategies for other groups, like songbirds, that exhibit high variation in their population trends and are influenced by multiple ecological traits. [ABSTRACT FROM AUTHOR]

Phylogeographic congruence among co‐distributed taxa is regarded as an inherent inference to vicariance events. Nonetheless, incongruent patterns of contemporary lineage divergence among taxa indicated that species differ in their response to common past events. To investigate the role of past events, ecological traits and lineage diversification time in shaping the contemporary phylogeographic patterns, comparative analyses were conducted for Tibetan stone loaches in the Himalayas using three gene markers and two ecological traits (depth of caudal peduncle in their length and presence/absence of posterior chamber of the air bladder). By a thorough sampling in two flanks of the Himalayas, the authors detected that phylogenetic breaks were spatially discordant and divergences of populations were also temporally asynchronous in co‐distributed loaches. Estimated divergence time using fossil‐calibrated node dating indicated that the Tibetan stone loaches colonised into the south flank of the Himalayas until the Pleistocene. The demographic expansions were also disconcerted between populations in north and south flanks, or east and west Himalayas. Ongoing gene flows between populations in north and south sides implied that the Himalayas do not strictly impede dispersal of cold‐adapted species. The results highlight that the quaternary climatic oscillation, in conjunction with ecological traits and lineage diversification time, shaped contemporary phylogenetic patterns of stone loaches in the Himalayas and provide new insights into the biodiversity and composition of species in the Himalayas and surrounding region. [ABSTRACT FROM AUTHOR]

We used Chironomidae functional attributes to assess how spatial and temporal scales influence assemblage structure. We collected Chironomidae larvae in 10 streams from southern Brazil over 5 years and measured land use, limnological variables, and rainfall. We use substrate and habitat preference as ecological attributes and feeding habits and tube construction as biological attributes. We performed a between-class correspondence analysis using spatial and temporal scales. In years with greater rainfall and turbidity and lower water temperature, the predominant functional characteristics were preferred for lotic environment and leaf substrate. On the spatial scale, in streams that showed more exposed soil, the predominant functional characteristics were lentic habitat and muddy substrate. For streams with more vegetation, pasture, and electrical conductivity, the ecological trait was leaf substrate. The functional structure of assemblage responds to both scales only for ecological attributes. On the spatial scale, we observed that land use was the main predictor, whereas on the temporal scale, rainfall was the most important predictor. We emphasize that extreme climatological phenomena can potentialize the effects of environmental variables, which shows the importance of the time scale for environmental quality. [ABSTRACT FROM AUTHOR]

Nearly 50 years after the ground-breaking isolation of the primary Comptonia peregrina microsymbiont under axenic conditions, efforts to isolate a substantial number of Protofrankia and Frankia strains continue with enduring challenges and complexities. This study aimed to streamline genomic insights through comparative and predictive tools to extract traits crucial for isolating specific Frankia in axenic conditions. Pangenome analysis unveiled significant genetic diversity, suggesting untapped potential for cultivation strategies. Shared metabolic strategies in cellular components, central metabolic pathways, and resource acquisition traits offered promising avenues for cultivation. Ecological trait extraction indicated that most uncultured strains exhibit no apparent barriers to axenic growth. Despite ongoing challenges, potential caveats, and errors that could bias predictive analyses, this study provides a nuanced perspective. It highlights potential breakthroughs and guides refined cultivation strategies for these yet-uncultured strains. We advocate for tailored media formulations enriched with simple carbon sources in aerobic environments, with atmospheric nitrogen optionally sufficient to minimize contamination risks. Temperature adjustments should align with strain preferences—28–29°C for Frankia and 32–35°C for Protofrankia—while maintaining an alkaline pH. Given potential extended incubation periods (predicted doubling times ranging from 3.26 to 9.60 days, possibly up to 21.98 days), patience and rigorous contamination monitoring are crucial for optimizing cultivation conditions.

Fungi are an integral part of the nitrogen and phosphorus cycling in trophic networks, as they participate in biomass decomposition and facilitate plant nutrition through root symbioses. Nutrient content varies considerably between the main fungal habitats, such as soil, plant litter or decomposing dead wood, but there are also large differences within habitats. While some soils are heavily loaded with N, others are limited by N or P. One way in which nutrient availability can be reflected in fungi is their content in biomass. In this study, we determined the C, N, and P content (in dry mass) of fruiting bodies of 214 fungal species to inspect how phylogeny and membership in ecological guilds (soil saprotrophs, wood saprotrophs, and ectomycorrhizal fungi) affect the nutrient content of fungal biomass. The C content of fruiting bodies (415 ± 25 mg g–1) showed little variation (324–494 mg g–1), while the range of N (46 ± 20 mg g–1) and P (5.5 ± 3.0 mg g–1) contents was within one order of magnitude (8–103 mg g–1 and 1.0–18.9 mg g–1, respectively). Importantly, the N and P contents were significantly higher in the biomass of soil saprotrophic fungi compared to wood saprotrophic and ectomycorrhizal fungi. While the average C/N ratio in fungal biomass was 11.2, values exceeding 40 were recorded for some fungi living on dead wood, typically characterized by low N content. The N and P content of fungal mycelium also showed a significant phylogenetic signal, with differences in nutrient content being relatively low within species and genera of fungi. A strong correlation was found between N and P content in fungal biomass, while the correlation of N content and the N-containing fungal cell wall biopolymer—chitin showed only weak significance. The content of macronutrients in fungal biomass is influenced by the fungal life style and nutrient availability and is also limited by phylogeny.

Two approaches are applied to studies of the phylogeny of the plague microbe Yersinia pestis, i.e., the reconstruction of its history: Molecular genetic (MG) and ecological (ECO). The MG approach dominates. Phylogenies created with MG and ECO methods are not congruent. MG conclusions contradict the known facts and patterns of ecology, biogeography, paleontology, etc. We discuss some obvious contradictions and inconsistencies and suggest that real phylogenies of the plague microbe can be constructed only on the basis of the integration of MG and ECO approaches.

The current ecological crisis has risen extinction rates to similar levels of ancient mass extinctions. However, it seems to not be acting uniformly across all species but affecting species differentially. This suggests that species' susceptibility to the extinction process is mediated by specific traits. Since understanding this response mechanism at large scales will benefit conservation effort around the world, we used the IUCN global threat status and population trends of 8281 extant bird species as proxies of the extinction risk to identify the species-specific traits affecting their susceptibility to extinction within the biogeographic regions and at the global scale. Using linear mixed effect models and multinomial models, we related the global threat status and the population trends with the following traits: migratory strategy, habitat and diet specialization, body size, and generation length. According to our results and independently of the proxy used, more vulnerable species are sedentary and have larger body size, longer generation time, and higher degree of habitat specialization. These relationships apply globally and show little variation across biogeographic regions. We suggest that such concordant patterns might be caused either by a widespread occurrence of the same threats such as habitat modification or by a uniform capacity of some traits to reflect the impact of different local threats. Regardless of the cause of this pattern, our study identified the traits that affect species' response capability to the current ecological crisis. Conservation effort should focus on the species with trait values indicating the limited response capacity to overcome this crisis. [ABSTRACT FROM AUTHOR]

Mosses are an early lineage of the plant kingdom, with around 13,000 species. Although an important part of biodiversity, providing crucial ecosystem services, many species are threatened with extinction. However, only circa 300 species have so far had their extinction risk evaluated globally for the IUCN Red List. Functional traits are known to help predict the extinction risk of species in other plant groups. In this study, a matrix of 15 functional traits was produced for 723 moss species from around the world to evaluate the potential of such predictability. Binary generalized linear models showed that monoicous species were more likely to be threatened than dioicous species, and the presence of a sporophyte (sexual reproduction), vegetative reproduction and an erect (straight) capsule instead of a pendent (immersed) one lowers the risk of species extinction. A longer capsule, seta and stem length, as well as broader substrate breadth, are indicative of species with a lower risk of extinction. The best-performing models fitted with few traits were able to predict extinction risks of species with good accuracy. These models applied to Data Deficient (DD) species proved how useful they may be to speed up the IUCN Red List assessment process while reducing the number of listed DD species, by selecting species most in need of a full, detailed assessment. Some traits tested in this study are a novelty in conservation research on mosses, opening new possibilities for future studies. The traits studied and the models presented here are a significant contribution to the knowledge of mosses at risk of extinction and will help to improve conservation efforts.

Species distribution models (SDMs) are numerical tools that combine species occurrence (or abundance) data with environmental variables, to predict the species’ distribution spatially. SDMs are increasingly used for purposes of conservation planning and management of ecosystems. The model performance can be measured as the goodness-of-fit (GOF), which describes how well it fits (e.g., the discrepancy between the statistical model and the data observed). However, there is still a need for a deeper understanding of the ecological characteristics of the modelled species which can affect the accuracy of those models. Here, we compared the goodness-of-fit of SDMs, considering several ecological characteristics of 56 bird species: Most frequently used environment, body mass, home-range, species specialization index (SSI), diet specialization and detectability. All SDMs were performed on the same dataset, and the relative frequency of each species was also incorporated to account for occurrence heterogeneity. GOF of SDMs was not significantly correlated with species’ frequency, home-range, body mass, degree of detectability or level of diet specialization. Overall, the birds with more accurate SDMs (GOF) were species of grasslands and the GOF was positively associated with SSI, indicating that more habitat-specialized species are better predictable. Our findings suggest that is important to focus not only on statistical issues potentially related to model performance but also on ecological characteristics of single species because can improve the performance of modellistic procedures, increasing their predictive power.

The successful large-scale cultivation of morel mushrooms (Morchella sextelata) requires a comprehensive understanding of the soil bacterial communities associated with morel-farming beds, as the interactions between fungi and bacteria play a crucial role in shaping the soil microbiome. In this study, we investigated the temporal distribution and ecological characteristics of soil bacteria associated with morel fruiting bodies at different stages, specifically the conidial and primordial stages, under two cropping regimes, non-continuous cropping (NCC) and continuous cropping (CC). Our findings revealed a significant reduction in the yield of morel primordia during the third year following 2 years of CC (0.29 + 0.25 primordia/grid), in comparison to the NCC regime (12.39 + 6.09 primordia/grid). Furthermore, inoculation with morel mycelia had a notable impact on soil bacterial diversity, decreasing it in the NCC regime and increasing the number of generalist bacterial members in the CC regime. The latter regime also led to the accumulation of nutrients in the soil beds, resulting in a shift from a stochastic to a deterministic process in the composition of the bacterial community, which differed from the NCC regime. Additionally, mycelial inoculation had a positive effect on the abundance of potential copiotrophic/denitrifying and N-fixing bacteria while decreasing the abundance of oligotrophic/nitrifying bacteria. Interestingly, this effect was more pronounced in the NCC regime than in the CC regime. These results suggest that the increase in potential copiotrophic/denitrifying and N-fixing bacteria facilitated the decomposition of nutrients in exogenous nutrient bags by morel mushrooms, thereby maintaining nitrogen balance in the soil. Overall, our study provides valuable insights into the interactions between morel mycelia and the associated soil bacteriome as well as the influence of different cultivation regimes on these interactions. These findings contribute to our understanding of the complex dynamics of the soil microbiome and can inform strategies for optimizing morel mushroom cultivation. [ABSTRACT FROM AUTHOR]

Dispersal can enable access to resources in new locations. Consequently, traits that govern dispersal probability and dispersal distance may impact an individual's ability to acquire resources. However, spatial variation in the quality or quantity of resources may mediate potential adaptive benefits of novel dispersal traits. Ecological traits (i.e., those that determine how an individual processes resources) will also, by definition, affect how an individual interacts with the resource landscape. In a spatially heterogeneous environment, this creates potential for evolutionary feedbacks between dispersal-related traits and ecological traits. For example, dispersal may introduce individuals to novel resources, at which point there may be selection for local adaptation of ecological traits. Conversely, an individual's ability to utilize different resource types may determine how dispersal impacts fitness. Here, we develop an individual-based model to investigate co-evolution of dispersal and ecological traits in a landscape where multiple resources vary independently across space. We find that: (1) resource specialists can emerge and tend to evolve dispersal strategies suited to the structure of their preferred resource type and (2) generalists, when they emerge, tend to possess intermediate dispersal strategies. Lastly, we note that the effect of dispersal on the evolution of the ecological trait is weaker than vice versa and, as a result, appreciable heterogeneity in the abundance of resources across a landscape will likely obscure a signal of co-evolution. [ABSTRACT FROM AUTHOR]

Aim: To investigate spatial variations in the ecological trait structure of breeding bird assemblages on oceanic islands. To test the hypothesis that native and naturalized alien bird species are filtered by different processes, leading to diverging associations between traits and insular environmental gradients. Location: Oceanic islands worldwide. Time Period: Current. Major Taxa Studied: Terrestrial breeding birds. Methods: We assessed the composition of breeding terrestrial bird assemblages from the extent‐of‐occurrence maps of 3170 native and 169 naturalized alien species on 4660 oceanic islands. We quantified their ecological trait structures with respect to diet, mobility and body mass as the standardized distance between a mean pairwise trait distance index and its expectation from a null model. We used spatial generalized additive models to relate trait structures to proxies of environmental conditions and human impact on land, accounting for all species, native species only and alien species only. Results: Diet and mobility traits tended to be more diverse than expected by a null model, while body mass tended towards clustering. Trait‐environment associations were idiosyncratic, but environmental variables tended to explain trait structures better than human impacts on habitats. Islands invaded by alien species had similar trait structures as noninvaded ones, although they hosted assemblages with more clustered body masses. However, trait‐environment relationships diverged when considering all islands and all species, invaded islands only or alien species only. Main Conclusions: Despite their ecosystem‐level influences, alien species have a limited effect on the global patterns of trait structures in the breeding bird assemblages of the world's islands, either because they account for a low proportion of species or because successful invaders and native species have similar trait suites. Trait‐environment associations suggest that filters related to the conditions of alien species' introductions explain their distributions in island assemblages better than the constraints associated with isolated environments. [ABSTRACT FROM AUTHOR]

Two approaches are applied to studies of the phylogeny of the plague microbe Yersinia pestis, i.e., the reconstruction of its history: Molecular genetic (MG) and ecological (ECO). The MG approach dominates. Phylogenies created with MG and ECO methods are not congruent. MG conclusions contradict the known facts and patterns of ecology, biogeography, paleontology, etc. We discuss some obvious contradictions and inconsistencies and suggest that real phylogenies of the plague microbe can be constructed only on the basis of the integration of MG and ECO approaches. [ABSTRACT FROM AUTHOR]

Solitary bees, such as Osmia cornifrons, O. pedicornis, O. satoi, and O. taurus (Hymenoptera: Megachilidae), have the potential for cost-effective and sustainable pollination, necessitating a comprehensive understanding of their ecological traits to implement effective fertilization strategies for various crops. This study investigated the nesting rate of Osmia spp. in different regions and altitudes, using various trap types, and found that the highest nesting rate occurred at altitudes of 300–399 m a.s.l. and showing a preference for bamboo-type traps, with the Andong region having the highest nesting rate overall, indicating the influence of altitude, habitat area, and trap type on the density of Osmia spp. nests. The distribution and diversity of the four Osmia spp. in different regions and altitudes revealed variations in their occurrence, with O. pedicornis having the broadest distribution rate, particularly at altitudes above 300 m a.s.l.. The present study found significant differences between species in the cocoon masses of O. cornifrons, O. pedicornis, and O. taurus, with region and altitude influencing the masses of each species too. [ABSTRACT FROM AUTHOR]

Copyright of Therya is the property of Asociacion Mexicana de Mastozoologia, A. C. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

On oceanic islands, strong human impacts on habitats, combined with introductions of exotic species, modify the composition of terrestrial bird assemblages and threaten their ecological functions. In La Réunion, an oceanic island located in the Madagascan region, a national park was established in 2007 to counter the ecosystem‐level effects of three centuries of habitat conversion, native species destruction and exotic species introductions. Here, we investigated how bird assemblages were structured in these human‐modified landscapes, 10 years before the national park set out its first conservation measures. We used a combination of multivariate statistics and generalized additive models to describe variations in the taxonomic and functional composition and diversity of 372 local bird assemblages, encompassing 20 species, along gradients of habitat composition and configuration. We found that native species were tied to native habitats while exotic species were associated with urban areas and man‐modified landscape mosaics, with some overlap at mid‐elevations. Species' trophic preferences were segregated along habitat gradients, but ecological traits had an overall weak role in explaining the composition of species assemblages. Hence, at the time of the survey, native and exotic species in La Réunion formed two spatially distinct species assemblages with contrasting ecological trait suites that benefited from antagonistic habitat compositions and dynamics. We conclude that our results support the analysis of historical data sets to establish reference points to monitor human impacts on insular ecosystems. [ABSTRACT FROM AUTHOR]

Wetland ecosystems host an extensive number of avian species and play therefore a key role in biodiversity conservation. However, avifauna in wetlands is severely impacted by the anthropogenic transformation of natural habitats into other land uses. Understanding how habitat changes influence avian community dynamics is crucial for effective management and conservation of bird habitats. Here, we assessed spatio-temporal variation in taxonomic, functional, and phylogenetic diversity, and assembly structures of the bird community in the Indawgyi Wetland Ecosystem in Myanmar. Bird surveys were seasonally conducted at 120 sample plots, which were equally distributed among four habitat types subject to different level of human influences (natural lake habitat, seasonally flooded grasslands, riparian forest, and agricultural land). Across habitat types, functional and phylogenetic diversity were the highest in the lake habitat, especially during the migration season, and the lowest in the cultivated habitat. Our results indicated over-dispersed functional and phylogenetic structures in the lake habitat, with clustered structures in the remaining habitats. Diversity of species important for conservation was also higher in the lake habitat and in areas far away from human disturbances. Spatial variation of bird community diversity suggests that conservation efforts in this ecosystem should concentrate more on the lake habitat and associated grassland habitats. Moreover, our results suggest the need for habitat restoration in riparian forests and increased sustainable agricultural practices in order to improve the contribution of these habitats to the diversity in the avifauna community. Our study highlighted the importance of integrating functional and phylogenetic dimensions into biodiversity analyses providing broader ecological insights for conservation. [ABSTRACT FROM AUTHOR]

Chemical resistance in pest organisms threatens global food security and human health, yet resistance issues are mostly dealt with reactively. Predictive models of resistance risk provide an avenue for field practitioners to implement proactive pest management but require knowledge of factors that drive resistance evolution. Despite the importance of chemical selection pressure on resistance evolution, poor availability of chemical usage data has limited the use of a general multi-species measure of selection pressure in predictive models. We demonstrate the use of pesticide product registrations as a predictor of resistance status and potential proxy of chemical selection pressure. Pesticide product registrations were obtained for 427 USA and 209 Australian agricultural arthropod pests, for 42 and 39 chemical Mode of Action (MoA) groups, respectively. We constructed Bayesian logistic regressions of resistance status as a function of the number of pesticide product registrations and two ecological traits, phagy, and voltinism. Our models were well-supported with demonstrated power to discriminate between resistant and susceptible observations in both USA and Australian species sets using cross-validation. Importantly, we observed strong support for a positive association between pesticide products and resistance status. Our work expands the horizon for proactive management by quantitatively linking a proxy for selection pressure on pest species to different chemical MoAs, which can be combined with ecological information to build models of resistance evolution risk. Because pesticide product registrations can typically be obtained from publicly available data, we believe they have broad applicability for risk predictions in other agricultural pests, such as weeds and fungi, and to other geographical regions beyond the USA and Australia. [ABSTRACT FROM AUTHOR]

Ecological niche partitioning is crucial in reducing interspecific competition, fostering species coexistence, and preserving biodiversity. Our research, conducted in a hybrid mixed oak forest in Yushan, Jiangsu, China, focuses on Quercus acutissima, Q. variabilis, Q. fabri, and Q. serrata var. brevipetiolata. Using Point Pattern Analysis, we investigated the spatial relationships and ecological trait autocorrelation, including total carbon (TC), nitrogen (TN), phosphorus (TP), potassium (TK), and breast height diameter (DBH). Our findings show aggregated distribution patterns within the oak populations. The Inhomogeneous Poisson Point model highlights the impact of environmental heterogeneity on Q. variabilis, leading to distinct distribution patterns, while other species showed wider dispersion. This study reveals aggregated interspecific interactions, with a notable dispersal pattern between Q. acutissima and Q. variabilis. We observed significant variability in nutrient elements, indicating distinct nutrient dynamics and uptake processes. The variations in total carbon (TC), nitrogen (TN), phosphorus (TP), and potassium (TK) suggest distinct nutrient dynamics, with TK showing the highest variability. Despite variations in TC, TK, and TP, the species did not form distinct classes, suggesting overlapping nutritional strategies and environmental adaptations. Furthermore, spatial autocorrelation analysis indicates strong positive correlations for DBH, TC, and TP, whereas TK and TN correlations are non-significant. The results suggest habitat filtering as a key driver in intraspecific relationships, with a finer spatial scale of ecological niche division through TC and TP, which is crucial for maintaining coexistence among these oak species.

Estuarine fish assemblages are undergoing rapid change due to invasions of non-native species and physicochemical alteration of their habitats. Here, we examine the novel fish assemblages of the upper San Francisco Estuary (SFE) by first placing the fishes into ecological assemblages (EAs) of species that co-occur based on salinity, macrohabitat, and diet. We then used the morphological characteristics of each species to place them into functional groups (FGs) or potentially functionally independent species (FIS). Our question was: are there native and non-native species that occupy a similar niche in ecomorphological space, and thus potentially interact? Then, based on our results, we sought to understand if there is evidence that native species are being displaced by non-native species. The 43 species examined were placed into 17 EAs of potentially interacting species. Within these EAs, we identified 13 FGs and 13 FIS based on ecomorphology. Six FGs contain both native and non-native species indicating organization independent of the origin of the species. However, in most cases the native species were present in low abundance or were in categories of risk. Five FGs contained just non-native species that were found mainly in altered habitats and two FGs contained just native species. Overall, both native and non-native species appear to form a novel assemblage, although the decline of some native species in the face of potential competitors and predators suggests the final assemblage has not yet been determined. In addition, ongoing alterations of the SFE ecosystem increase the likelihood that invasions of new species will continue, causing further changes to the assemblage.

IntroductionScientific documentation of the qualitative forest vegetation parameters of a biogeographical area provides baseline information to guide conservation strategies and design policies for biodiversity management regulations.MethodsWe present one of the most comprehensive qualitative vegetation analyses to evaluate the entire structure and function of an ecosystem in the remote northern part of the Kashmir Himalaya, India. Several multivariate ecological community analyses were conducted after determining the presence of plant species in the various habitats using a random sampling technique.ResultsIn total, 155 plant species belonging to 120 genera and 49 families occurred in the area. Asteraceae was the largest family (12% of plant species) followed by Rosaceae (11%). The patterns of species distribution across families were uneven, with 50% of the species belonging to only 7 families, and 23 families being monotypic. In terms of functional groups, the herbaceous growth form dominated. Therophytes were the dominant life form, indicating that the vegetation was disturbed. According to the phytogeographical research, 65% of the species documented in the study area were native, 15% were invasive, 14% naturalized, and 5% being casual. The majority (30%) of exotic species were reported along roadsides. Of all the species found, 39% grew in their natural habitats, such as forests, and 11% were scattered along roadsides. Plant species were grouped in five different clusters based on their floristic similarity. According to the estimated diversity indices, natural forest has the greatest values for Shannon’s and Simpson’s index. We found that the study area serves as the natural habitat for several significant, endangered medicinal plants, including Arnebia benthamii, Bergenia ciliata, Delphinium roylei, Gentiana kurroo, Phytolacca acinosa, Saussurea costus, and Trillium govanianum. Therefore, we recommend that human intervention in natural regeneration efforts be prioritized in these habitats to increase the population of these species.ConclusionExamining species features from the perspective of functional groups contributes to our understanding of the ecological aspects of the flora. It may also be useful in developing management plans to ensure long-term management of forest landscapes in this remote Himalayan region.

The aim of the study was to investigate the modifications of the macroinvertebrate multi-species assemblage in relation to hydromorphological discontinues, since macroinvertebrates are traditionally exploited in water quality assessment activities. Three sampling sites characterized by different hydrological characteristics were selected in five stations along the River Aniene in Central Italy. We evaluated the macroinvertebrate structure, traits, biotic and diversity indices in relation to the erosive power. Among macroinvertebrate taxa, Elminthidae and Chironomidae families showed a particular occurrence pattern associated with the site at the base of vertical drop, characterized by the stronger hydrodynamic. However, the water quality status was high, not showing differences between the three sites. Our finding has a novelty value as similar studies on the investigation of the hydromorphological discontinuities on macroinvertebrate structure and ecological traits are very scarce in the literature. [ABSTRACT FROM AUTHOR]

Ensuring connectivity in the countryside and cities is a key element of nature protection, allowing genetic fluxes between populations in fragmented ecosystems. We tested the hypothesis that artificial green corridors are effective for birds in the city of Cochabamba (Bolivia). We compared the following aspects of natural corridors, with generally preserved vegetation, to those of artificial corridors, constituting parks and gardens in a matrix of streets densely planted with trees: species abundance and richness, functional diversity, and the traits of bird communities. We used canonical redundancy analysis to relate species abundance to the corridor type, noise, tree vegetation structure, richness, and functional diversity. We also tested the explanatory factors for relationships with bird species richness, functional diversity, and traits. We found that most species were shared between the corridor types; the corridor type, nevertheless, had significant effects, with bird species in the green corridors being more common and heavier and having a lower beak depth/mass. By contrast, noise-reflecting urbanization deeply affected all of the studied traits, indicating large shifts in species composition. In conclusion, green corridors seem reliable enough to maintain birds at a level almost comparable to that in linear corridors, but noise is a limiting factor for efficiency for both types. [ABSTRACT FROM AUTHOR]

Performance trade‐offs between competition and colonization can be an important mechanism facilitating regional coexistence of competitors. However, empirical evidence for this trade‐off is mixed, raising questions about the extent to which it shapes diverse ecological communities. Here, we outline a framework that can be used to improve empirical tests of the competition‐colonization trade‐off.We argue that tests of the competition‐colonization trade‐off have been diverted into unproductive paths when dispersal mode and/or competition type have been inadequately defined. To generate comparative predictions of associations between dispersal and competitive performance, we develop a conceptual trait‐based framework that clarifies how dispersal mode and type of competitor shape this trade‐off at the stage of dispersal and establishment in a variety of systems. Our framework suggests that competition‐colonization trade‐offs may be less common for passively dispersing organisms when competitive dominants are those best able to withstand resource depletion (competitive response), and for active dispersers when traits for dispersal performance are positively associated with resource pre‐emption (competitive effect).The framework presented here is designed to provide common ground for researchers working in different systems in order to prompt more effective assessment of this performance trade‐off and its role in shaping community structure. By delineating key system properties that mediate the trade‐off between competitive and colonization performance and their relationship to individual‐level traits, researchers in disparate systems can structure their predictions about this trade‐off more effectively and compare across systems more clearly. [ABSTRACT FROM AUTHOR]

Natural history collections (NHCs) have been indispensable to understanding longer‐term trends of the timing of seasonal events. Massive‐scale digitization of specimens promises to further enable phenological research, especially the ability to move towards a deeper understanding of drivers of change and how trait–environment interactions shape phenological sensitivity.Despite the promise of NHCs to answer fundamental phenology questions, the use of these data resources presents unique and often overlooked challenges requiring specialized workflow steps, such as assembling multisource data, accounting for date imprecision and making decisions about trade‐offs between data density and spatial resolution.We provide a set of key best practice recommendations and showcase these via a case study that utilizes NHC data to test hypotheses about spatiotemporal trends in adult Lepidoptera (i.e. butterflies and moths) flight timing across North America. Our case study is a worked example of these best practices, helping practitioners recognize and overcome potential pitfalls at each step, from data acquisition and cleaning, to delineating spatial units and proper estimation of phenological metrics and associated uncertainty, to building appropriate models.We confirm and extend the critical importance of voltinism and diapause strategy, but less‐so daily activity patterns, for predicting Lepidoptera phenology spatiotemporal trends. Our case study also showcases the unique power of NHC data to test existing hypotheses and generate new insights about temporal phenological trends. Specifically, migratory species and species that enter diapause as adults are advancing the start of flight periods in more recent years, even after accounting for climate context. These results highlight the physiological and adaptive differences between species with different overwintering strategies.We close by noting the value of partnerships between data scientists, museum experts and ecological modellers to fully harness the power of digital data resources to address pressing global change challenges. These partnerships can extend approaches for integrating multiple data types to fully unlock our understanding of the tempo, mode, drivers and outcomes of phenological changes at greater spatial, temporal and taxonomic scales. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

The enhancement of pest regulation service in crops depends for a large part on the capacity of agroecological practices to increase the presence of key species or functional traits in arthropod communities within fields.We investigated the effects of undestroyed strips of winter cover crops in maize fields on carabid community composition, and on the distribution of three ecological traits: diet, wing status and body size.We found that the community composition and the distribution of ecological traits in the in‐field cover crop strips had commonalities with both adjacent cropped areas and field margins. Some species were recorded mostly or only in the strips indicating that strips could support carabid species and help increase local diversity from the first year of establishment.The activity‐density of Poecilus cupreus and Pterostichus melanarius was higher in the cropped proximity of the strip, and the body size was influenced by the distance from the strip.Our results suggest that carabid communities are shaped by the habitat type, but the influence of such agroecological infrastructures on communities of adjacent crops is minor beyond a distance of 10 m. However, overall species abundance was increased and thus potentially provided enhanced pest regulation. [ABSTRACT FROM AUTHOR]

Since the floristic study of lichens at the Barton and Weaver Peninsulas of King George Island in 2006, there have been intense investigations of the lichen flora of the two peninsulas as well as that of Fildes Peninsula and Ardley Island in Maxwell Bay, King George Island, South Shetland Islands, maritime Antarctic. In this study, a total of 104 species belonging to 53 genera, are identified from investigations of lichens that were collected in austral summer seasons from 2008 to 2016. Phenotypic and molecular analyses were incorporated for taxonomic identification. In particular, 31 species are found to be endemic to the Antarctic and 22 species are newly recorded to the Maxwell Bay region. Lepra dactylina, Stereocaulon caespitosum, and Wahlenbergiella striatula are newly recorded in the Antarctic, and the previously reported taxon Cladonia furcata is excluded from the formerly recorded list due to misidentification. We also provide ecological and geographical information about lichen associations and habitat preferences. [ABSTRACT FROM AUTHOR]

Although vicariant processes are expected to leave similar genomic signatures among codistributed taxa, ecological traits such as habitat and stratum can influence genetic divergence within species. Here, we combined landscape history and habitat specialization to understand the historical and ecological factors responsible for current levels of genetic divergence in three species of birds specialized in seasonally flooded habitats in muddy rivers and which are widespread in the Amazon basin but have isolated populations in the Rio Branco. Populations of the white‐bellied spinetail (Mazaria propinqua), lesser wagtail‐tyrant (Stigmatura napensis) and bicolored conebill (Conirostrum bicolor) are currently isolated in the Rio Branco by the black‐waters of the lower Rio Negro, offering a unique opportunity to test the effect of river colour as a barrier to gene flow. We used ultraconserved elements (UCEs) to test alternative hypotheses of population history in a comparative phylogeographical approach by modelling genetic structure, demographic history and testing for shared divergence time among codistributed taxa. Our analyses revealed that (i) all three populations from the Rio Branco floodplains are genetically distinct from other populations along the Amazon River floodplains; (ii) these divergences are the result of at least two distinct events, consistent with species habitat specialization; and (iii) the most likely model of population evolution includes lower population connectivity during the Late Pleistocene transition (~250,000 years ago), with gene flow being completely disrupted after the Last Glacial Maximum (~21,000 years ago). Our findings highlight how landscape evolution modulates population connectivity in habitat specialist species and how organisms can have different responses to the same historical processes of environmental change, depending on their habitat affinity. [ABSTRACT FROM AUTHOR]

To sample bee communities, a combination of methods is necessary, the most common being hand netting (HN) and pan traps (PT). However, there has been little exploration into how vertical distribution of PT can improve their sampling efficiency, also taking the temporal variation of floral resources into account.Here, we analysed the properties of bee communities sampled with PT at different heights (1.6 and 4.0 m) compared with PTs close to the ground, HN and large blue bucket trap (BB). In addition, we tested the effect of variation in the availability of floral resources on the performance of each method. Bees were collected in fragments of the Brazilian Caatinga.We captured 60 bee species with PTs, HN and BB, with significant increases in the sample coverage with elevated bowls (BB = 56.7%, HN = 60.0%, PT0.3 m = 23.3%, PT1.6 m = 36.7%, PT4.0 m = 50.0%). Elevating the bowls increased the sampling of bees with larger body size. Considering the three heights, PTs registered similar richness compared to HN and BB, but differed in the composition of species and ecological traits.When floral resource availability was greater, the abundance and richness of bees caught in PTs decreased, however, the elevated PT increased their ecological uniqueness (degree of uniqueness of the samples in terms of community composition). Thus, elevating PTs enables the capture of bees that forage at a specific height when floral resources increase.Our results highlight the importance of the vertical distribution of PT for sampling bees, since it improves their performance and its complementarity with other methods. [ABSTRACT FROM AUTHOR]

Selecting appropriate candidates for genetic rescue mostly relies on previous genetic research and monitoring, while ecological and behavioural traits of the remnant and source populations are rarely considered for such conservation measures. Because of their slow recovery, Eurasian lynx Lynx lynx populations in Central and Western Europe have been a repeated target of genetic reinforcements and reintroductions in the past 50 years. Once inhabiting much of south-eastern Europe, the Balkan lynx L. l. balcanicus is now critically endangered and confined to a small population. Long-term isolation has caused loss of genetic diversity and has possibly led to inbreeding depression. Immediate actions need to consider genetic reinforcement to increase the genetic diversity and secure population viability. Here, we compared the Balkan lynx with two neighbouring populations: Dinaric population originating from the Carpathian subspecies (L.l. carpathicus) and Anatolian population of Caucasian subspecies (L.l. dinniki) to determine is better suited source from an ecological standpoint. Main findings suggest that the L.l. carpathicus is ecologically more similar to the L.l. balcanicus and therefore likely better suited for the environment of south-western Balkans on the basis of prey preference (roe deer being the main prey), local prey availability (lower lagomorph and higher ungulate availability) and habitat use (predominant use of the mixed and broadleaved forests). We discuss the contrasting results of genetic and ecological analyses from both the evolutionary and conservation perspective and provide potential solutions that would take into account both aspects to pave the road towards potential genetic rescue of the Balkan lynx. [ABSTRACT FROM AUTHOR]

The loss of biodiversity is shaping today's environment. Bird ringing is a citizen science research tool that can determine species population dynamics and trends over a large geographic area. We used a 17-year time series to assess population trends of 74 passerine species based on ringing data from autumn migration in Slovenia (south-central Europe). We defined seven guilds of species according to geographic location, ecological, migratory, breeding, and life-history traits. Almost all guilds showed declining trends, except for the group of species of northeastern European origin, which showed a stable trend. The greatest decline was in low-productivity wetland specialists. Forest birds, seed-eaters, and high-productivity species experienced the smallest declines. The general declines in avifauna across a range of life-history and behavioural traits, and across a range of spatial and ecological scales, suggest widespread environmental change in Europe. Our data indicates that recent trends are toward ecosystem homogeneity, with an impoverished avifauna, including a few species that are increasing in abundance. These are the species with higher productivity and flexible behaviour, such as short-distance migrants, that have the greatest chance of prevailing in the recently rapidly changing environment because of their ability to adapt to changes in a timely manner. [ABSTRACT FROM AUTHOR]