1. NINL and DZANK1 co-function in vesicle transport and are essential for photoreceptor development in Zebrafish
- Author
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Judith G.M. Bergboer, Margo Dona, Nicola Horn, Hannie Kremer, Erwin van Wijk, Ralph Slijkerman, Toby J. Gibson, Theo A. Peters, Jan E.E. Keunen, Sylvia E. C. van Beersum, Gert Flik, Yves Texier, Jeroen van Reeuwijk, Erik de Vrieze, Ruxandra Bachmann-Gagescu, E.L.G.M. Tonnaer, Marius Ueffing, Karsten Boldt, Ronald Roepman, Lisette Hetterschijt, Grischa Toedt, University of Zurich, and van Wijk, Erwin
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Proteomics ,Cancer Research ,10039 Institute of Medical Genetics ,Sensory disorders Radboud Institute for Health Sciences [Radboudumc 12] ,0302 clinical medicine ,1306 Cancer Research ,Zebrafish ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Genetics (clinical) ,0303 health sciences ,Cilium ,Nuclear Proteins ,10124 Institute of Molecular Life Sciences ,Cell biology ,Vesicular transport protein ,Larva ,Motile cilium ,Organismal Animal Physiology ,Microtubule-Associated Proteins ,Photoreceptor Cells, Vertebrate ,Signal Transduction ,Research Article ,2716 Genetics (clinical) ,lcsh:QH426-470 ,Neurogenesis ,Dynein ,Biology ,Retina ,Motor protein ,03 medical and health sciences ,1311 Genetics ,Genetics ,1312 Molecular Biology ,Animals ,Humans ,Cilia ,Sensory disorders Radboud Institute for Molecular Life Sciences [Radboudumc 12] ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Dyneins ,Biological Transport ,Zebrafish Proteins ,biology.organism_classification ,lcsh:Genetics ,HEK293 Cells ,Renal disorders Radboud Institute for Molecular Life Sciences [Radboudumc 11] ,1105 Ecology, Evolution, Behavior and Systematics ,Melanosome transport ,570 Life sciences ,biology ,Ankyrin repeat ,Carrier Proteins ,030217 neurology & neurosurgery - Abstract
Ciliopathies are Mendelian disorders caused by dysfunction of cilia, ubiquitous organelles involved in fluid propulsion (motile cilia) or signal transduction (primary cilia). Retinal dystrophy is a common phenotypic characteristic of ciliopathies since photoreceptor outer segments are specialized primary cilia. These ciliary structures heavily rely on intracellular minus-end directed transport of cargo, mediated at least in part by the cytoplasmic dynein 1 motor complex, for their formation, maintenance and function. Ninein-like protein (NINL) is known to associate with this motor complex and is an important interaction partner of the ciliopathy-associated proteins lebercilin, USH2A and CC2D2A. Here, we scrutinize the function of NINL with combined proteomic and zebrafish in vivo approaches. We identify Double Zinc Ribbon and Ankyrin Repeat domains 1 (DZANK1) as a novel interaction partner of NINL and show that loss of Ninl, Dzank1 or both synergistically leads to dysmorphic photoreceptor outer segments, accumulation of trans-Golgi-derived vesicles and mislocalization of Rhodopsin and Ush2a in zebrafish. In addition, retrograde melanosome transport is severely impaired in zebrafish lacking Ninl or Dzank1. We further demonstrate that NINL and DZANK1 are essential for intracellular dynein-based transport by associating with complementary subunits of the cytoplasmic dynein 1 motor complex, thus shedding light on the structure and stoichiometry of this important motor complex. Altogether, our results support a model in which the NINL-DZANK1 protein module is involved in the proper assembly and folding of the cytoplasmic dynein 1 motor complex in photoreceptor cells, a process essential for outer segment formation and function., Author Summary The cytoplasmic dynein 1 motor complex is known to be essential for photoreceptor outer segment formation and function. NINL, an important interaction partner of three ciliopathy-associated proteins (lebercilin, USH2A and CC2D2A), was previously shown to associate with this motor complex. In this work, we scrutinize the role of NINL using a combination of affinity proteomics and zebrafish studies, in order to gain insight into the pathogenic mechanisms underlying these three associated hereditary disorders. We identify DZANK1 as an important interaction partner of NINL and show that loss of Ninl, Dzank1, or a combination of both synergistically results in impaired transport of trans Golgi-derived vesicles and, as a consequence, defective photoreceptor outer segment formation. Using affinity proteomics, we demonstrate that NINL and DZANK1 associate with complementary subunits of the cytoplasmic dynein 1 complex. Our results support a model in which the NINL-DZANK1 protein module is essential for the proper assembly and folding of the cytoplasmic dynein 1 motor complex, shedding light on the structure and stoichiometry of this important motor complex.
- Published
- 2015
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