2,047 results on '"E. Savage"'
Search Results
2. Linking habitat and population viability analysis models to account for vegetation dynamics, habitat fragmentation, and social behavior of a metapopulation of Florida scrub-jays
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Robert C. Lacy, David R. Breininger, Daniel J. Breininger, Anna E. Savage, Anna M. Forsman, Eric A. Hoffman, Stephen D. McGuffey, David DeMeyer, and Todd Mecklenborg
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habitat modeling ,habitat management ,population viability analysis ,Florida scrub-jay ,population management ,adaptive resource management ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Population dynamics and viability are driven by interactions among habitat and species biology. The Florida scrub-jay (Aphelocoma coerulescens) is a declining and Federally Threatened bird species that requires mid-succession habitat of partly open soil surface with mid-height vegetation. This habitat is created and sustained in a dynamic state of vegetation growth and periodic natural (e.g., fire) or managed (e.g., mechanical clearing) disturbances. Florida scrub-jays once occupied open oak scrub habitats across much of peninsular Florida but have been reduced to a few regional metapopulations and scattered isolated remnant populations. Many of these populations are undergoing continuing decline as open scrub is either converted to residential development or transitions into closed pine and oak forests due to fire suppression. Long-term field studies have shown that breeding and survival rates are determined by the quality of the scrub habitat, with the demography influenced by and in turn mediating the social structure. Prior Population Viability Analyses (PVA) that included dependencies of demographic rates on habitat and social structure indicated that the east coast Florida metapopulations were fragmented into remnant protected patches that were too small and isolated to support long-term persistence, even if the remaining habitat area and quality was sustained. Moreover, recent modeling of habitat transitions under various proposed management schemes, in conjunction with implementation of Adaptive Resource Management (ARM), projected that the proportion of optimal habitat will continue to decline. In this study, we integrated these habitat projections within the PVA and found that the Brevard County mainland metapopulation is projected to decline toward extinction unless habitat quality, extent, and connectivity can be improved. Land managers have recently implemented new innovative methods for restoring optimal scrub habitat, identifying potential improvements in habitat connectivity of nearby populations, and translocation methods to increase and reinforce the demographic and genetic integrity of local populations. Our linked habitat-population models project that the combination of such habitat and population management actions can stabilize the metapopulation and achieve long-term viability.
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- 2024
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3. Melody predominates over harmony in the evolution of musical scales across 96 countries.
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John M. McBride, Elizabeth Phillips, Patrick E. Savage, Steven Brown, and Tsvi Tlusty
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- 2024
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4. Rare variant aggregation in 148,508 exomes identifies genes associated with proxy dementia
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Douglas P. Wightman, Jeanne E. Savage, Christiaan A. de Leeuw, Iris E. Jansen, and Danielle Posthuma
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Medicine ,Science - Abstract
Abstract Proxy phenotypes allow for the utilization of genetic data from large population cohorts to analyze late-onset diseases by using parental diagnoses as a proxy for genetic disease risk. Proxy phenotypes based on parental diagnosis status have been used in previous studies to identify common variants associated with Alzheimer’s disease. As of yet, proxy phenotypes have not been used to identify genes associated with Alzheimer’s disease through rare variants. Here we show that a proxy Alzheimer’s disease/dementia phenotype can capture known Alzheimer’s disease risk genes through rare variant aggregation. We generated a proxy Alzheimer’s disease/dementia phenotype for 148,508 unrelated individuals of European ancestry in the UK biobank in order to perform exome-wide rare variant aggregation analyses to identify genes associated with proxy Alzheimer’s disease/dementia. We identified four genes significantly associated with the proxy phenotype, three of which were significantly associated with proxy Alzheimer’s disease/dementia in an independent replication cohort consisting of 197,506 unrelated individuals of European ancestry in the UK biobank. All three of the replicated genes have been previously associated with clinically diagnosed Alzheimer’s disease (SORL1, TREM2, and TOMM40/APOE). We show that proxy Alzheimer’s disease/dementia can be used to identify genes associated with Alzheimer’s disease through rare variant aggregation.
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- 2023
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5. SiGe quantum wells with oscillating Ge concentrations for quantum dot qubits
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Thomas McJunkin, Benjamin Harpt, Yi Feng, Merritt P. Losert, Rajib Rahman, J. P. Dodson, M. A. Wolfe, D. E. Savage, M. G. Lagally, S. N. Coppersmith, Mark Friesen, Robert Joynt, and M. A. Eriksson
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Science - Abstract
Quantum-dot spin qubits in Si/SiGe quantum wells require a large and uniform valley splitting for robust operation and scalability. Here the authors introduce and characterize a new heterostructure with periodic oscillations of Ge atoms in the quantum well, which could enhance the valley splitting.
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- 2022
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6. Group singing is globally dominant and associated with social context
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Dor Shilton, Sam Passmore, and Patrick E. Savage
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music ,cross-cultural ,cultural evolution ,social organization ,Science - Abstract
Music is an interactive technology associated with religious and communal activities and was suggested to have evolved as a participatory activity supporting social bonding. In post-industrial societies, however, music's communal role was eclipsed by its relatively passive consumption by audiences disconnected from performers. It was suggested that as societies became larger and more differentiated, music became less participatory and more focused on solo singing. Here, we consider the prevalence of group singing and its relationship to social organization through the analysis of two global song corpora: 5776 coded audio recordings from 1024 societies, and 4709 coded ethnographic texts from 60 societies. In both corpora, we find that group singing is more common than solo singing, and that it is more likely in some social contexts (e.g. religious rituals, dance) than in others (e.g. healing, infant care). In contrast, relationships between group singing and social structure (community size or social differentiation) were not consistent within or between corpora. While we cannot exclude the possibility of sampling bias leading to systematic under-sampling of solo singing, our results from two large global corpora of different data types provide support for the interactive nature of music and its complex relationship with sociality.
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- 2023
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7. On the interpretation of transcriptome-wide association studies.
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Christiaan de Leeuw, Josefin Werme, Jeanne E Savage, Wouter J Peyrot, and Danielle Posthuma
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Genetics ,QH426-470 - Abstract
Transcriptome-wide association studies (TWAS) aim to detect relationships between gene expression and a phenotype, and are commonly used for secondary analysis of genome-wide association study (GWAS) results. Results from TWAS analyses are often interpreted as indicating a genetic relationship between gene expression and a phenotype, but this interpretation is not consistent with the null hypothesis that is evaluated in the traditional TWAS framework. In this study we provide a mathematical outline of this TWAS framework, and elucidate what interpretations are warranted given the null hypothesis it actually tests. We then use both simulations and real data analysis to assess the implications of misinterpreting TWAS results as indicative of a genetic relationship between gene expression and the phenotype. Our simulation results show considerably inflated type 1 error rates for TWAS when interpreted this way, with 41% of significant TWAS associations detected in the real data analysis found to have insufficient statistical evidence to infer such a relationship. This demonstrates that in current implementations, TWAS cannot reliably be used to investigate genetic relationships between gene expression and a phenotype, but that local genetic correlation analysis can serve as a potential alternative.
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- 2023
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8. Twinning microstructure in the solid-phase epitaxial crystallization of BaTiO3
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Sophia F. Platten, Rui Liu, Theodore Sauyet, Turner J. Williams, Donald E. Savage, Md Sariful Sheikh, Matthew Dawber, Zhonghou Cai, Tao Zhou, Susan E. Babcock, and Paul G. Evans
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Biotechnology ,TP248.13-248.65 ,Physics ,QC1-999 - Abstract
Amorphous BaTiO3 layers deposited on SrTiO3 (001) substrates at room temperature were subsequently crystallized using solid phase epitaxy (SPE). Heating an initially amorphous BaTiO3 layer in air at 650 °C for 3 h resulted in crystallization with components in two distinct crystallographic orientation relationships with respect to the substrate. Part of the volume of the BaTiO3 layer crystallized in a cube-on-cube relationship with the substrate. Other volumes crystallized in four variants of a 70.5° rotation about ⟨110⟩, resulting in a ⟨221⟩ surface normal in each case. Each of these four variants forms a Σ = 3 coincident site lattice with respect to the SrTiO3 substrate and the cube-on-cube oriented BaTiO3. Heating for the same duration and temperature in a reducing gas atmosphere resulted in the formation of polycrystalline BaTiO3 with no preferred crystallographic orientation. The dependence on the gas atmosphere indicates that it may be possible to tune the annealing time, temperature, and atmosphere to produce a single crystalline BTO on STO by SPE or produce a desired distribution of orientations.
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- 2023
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9. Genome-wide association study of cerebellar volume provides insights into heritable mechanisms underlying brain development and mental health
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Elleke Tissink, Siemon C. de Lange, Jeanne E. Savage, Douglas P. Wightman, Christiaan A. de Leeuw, Kristen M. Kelly, Mats Nagel, Martijn P. van den Heuvel, and Danielle Posthuma
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Biology (General) ,QH301-705.5 - Abstract
A genome-wide association study on MRI cerebellar volume in the UK Biobank cohort identifies 30 loci with genome-wide significance that might be relevant to brain structure and cognitive function.
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- 2022
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10. Intrastromal Antibiotic Injection in Polymicrobial Keratitis: Case Report and Literature Review
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Clara M. Pak, Daniel E. Savage, Ronald Plotnik, and Rachel A.F. Wozniak
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polymicrobial keratitis ,intrastromal injections ,intrastromal antibiotics ,case report ,Ophthalmology ,RE1-994 - Abstract
Bacterial keratitis (corneal infection) caused by more than one organism is rare and exceedingly difficult to treat due to variable antibiotic susceptibilities. Intrastromal injections of antibiotics may be necessary to achieve higher drug concentrations at the site of infection, particularly in the case of deep stromal disease refractory to topical therapy. However, while this approach is increasingly used for fungal keratitis, there is a paucity of the literature regarding the use of intrastromal antibiotics bacterial keratitis. In the current case, an 86-year-old patient presented with a left corneal ulcer with corresponding microbiologic cultures positive for Staphylococcus epidermidis, Staphylococcus aureus, and Achromobacter species. The ulcer continued to progress despite maximal topical antibiotic treatment yet demonstrated marked improvement after two intrastromal injections of moxifloxacin administered 2 weeks apart. Polymicrobial keratitis can be particularly challenging to eradicate despite maximal topical antibiotic therapeutics. Intrastromal corneal injections provide a mechanism for drug delivery directly to the site of infection and thus may represent an important alternative in refractory cases.
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- 2022
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11. Effect of Cellulose and Polypropylene on Hydrolysis of Polyethylene Terephthalate for Chemical Recycling
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Seshasayee Mahadevan Subramanya, Yanyu Mu, and Phillip E. Savage
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Chemical engineering ,TP155-156 - Published
- 2022
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12. Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA
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Sihi, Debjani, Eric A. Davidson, Min Chen, Kathleen E. Savage, Andrew D. Richardson, Trevor F. Keenan, and David Y. Hollinger
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Soil respiration ,Soil carbon ,Climate change ,Q(10) ,DAMM ,FoBAAR ,Meteorology & Atmospheric Sciences ,Earth Sciences ,Biological Sciences ,Agricultural and Veterinary Sciences - Abstract
Heterotrophic respiration (Rh), microbial processing of soil organic matter to carbon dioxide (CO2), is a major, yet highly uncertain, carbon (C) flux from terrestrial systems to the atmosphere. Temperature sensitivity of Rh is often represented with a simple Q10 function in ecosystem models and earth system models (ESMs), sometimes accompanied by an empirical soil moisture modifier. More explicit representation of the effects of soil moisture, substrate supply, and their interactions with temperature has been proposed as a way to disentangle the confounding factors of apparent temperature sensitivity of Rh and improve the performance of ecosystem models and ESMs. The objective of this work was to insert into an ecosystem model a more mechanistic, but still parsimonious, model of environmental factors controlling Rh and evaluate the model performance in terms of soil and ecosystem respiration. The Dual Arrhenius and Michaelis-Menten (DAMM) model simulates Rh using Michaelis-Menten, Arrhenius, and diffusion functions. Soil moisture affects Rh and its apparent temperature sensitivity in DAMM by regulating the diffusion of oxygen, soluble C substrates, and extracellular enzymes to the enzymatic reaction site. Here, we merged the DAMM soil flux model with a parsimonious ecosystem flux model, FöBAAR (Forest Biomass, Assimilation, Allocation and Respiration). We used high-frequency soil flux data from automated soil chambers and landscape-scale ecosystem fluxes from eddy covariance towers at two AmeriFlux sites (Harvard Forest, MA and Howland Forest, ME) in the northeastern USA to estimate parameters, validate the merged model, and to quantify the uncertainties in a multiple constraints approach. The optimized DAMM-FöBAAR model better captured the seasonal and inter-annual dynamics of soil respiration (Soil R) compared to the FöBAAR-only model for the Harvard Forest, where higher frequency and duration of drying events significantly regulate substrate supply to heterotrophs. However, DAMM-FöBAAR showed improvement over FöBAAR-only at the boreal transition Howland Forest only in unusually dry years. The frequency of synoptic-scale dry periods is lower at Howland, resulting in only brief water limitation of Rh in some years. At both sites, the declining trend of soil R during drying events was captured by the DAMM-FöBAAR model; however, model performance was also contingent on site conditions, climate, and the temporal scale of interest. While the DAMM functions require a few more parameters than a simple Q10 function, we have demonstrated that they can be included in an ecosystem model and reduce the model-data mismatch. Moreover, the mechanistic structure of the soil moisture effects using DAMM functions should be more generalizable than the wide variety of empirical functions that are commonly used, and these DAMM functions could be readily incorporated into other ecosystem models and ESMs.
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- 2018
13. Perceptual and automated estimates of infringement in 40 music copyright cases.
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Yuchen Yuan, Charles Cronin, Daniel Müllensiefen, Shinya Fujii, and Patrick E. Savage
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- 2023
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14. Agreement Among Human and Automated Transcriptions of Global Songs.
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Yuto Ozaki, John M. McBride, Emmanouil Benetos, Peter Q. Pfordresher, Joren Six, Adam Tierney, Polina Proutskova, Emi Sakai, Haruka Kondo, Haruno Fukatsu, Shinya Fujii, and Patrick E. Savage
- Published
- 2021
15. Genetic variation among sea turtle life stages and species suggests connectivity among ocean basins
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Katrina F. Phillips, Katherine R. Martin, Gustavo D. Stahelin, Anna E. Savage, and Katherine L. Mansfield
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Chelonia mydas ,dispersal ,gene tree ,mitochondrial DNA ,mixed stock analysis ,Ecology ,QH540-549.5 - Abstract
Abstract Regional genetic differentiation of mitochondrial lineages occurs in migratory species with natal philopatry such as sea turtles. However, early juvenile dispersal represents a key opportunity for gene flow and colonization of new regions through founder events, making it an important yet under‐studied life stage. To assess connectivity among sea turtle life stages and ocean basins, we sequenced mitochondrial DNA (mtDNA) fragments from 35 juveniles sampled in the Gulf of Mexico from the rarely observed dispersal stage across three species: green turtles (Chelonia mydas; n = 30), hawksbills (Eretmochelys imbricata; n = 3), and loggerheads (Caretta caretta; n = 2). We estimated green turtle rookery contributions using a many‐to‐many Bayesian mixed stock analysis that incorporated dispersal probabilities based on rookery size and transport via ocean currents. We assembled a gene tree including 709 distinct mtDNA control region haplotypes from the literature for all seven extant sea turtle species to assess gaps in life‐stage data across ocean basins, as well as contextualize the lineages we sampled from dispersing juveniles. Our results indicate a high likelihood that green turtles sampled in the Gulf of Mexico originated from rookeries along the coast of Mexico, with smaller contributions from Costa Rica and Suriname. The gene tree analysis yielded species‐level relationships consistent with those presented previously, while intra‐species relationships between lineages and ocean basins differed, particularly within loggerhead and green turtle clades. Our results highlight the lack of genetic data from juvenile sea turtles, especially the early dispersal stage, and the potential for these data to answer broader questions of connectivity and diversification across species and lineages.
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- 2022
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16. The Exceptions and the Rules in Global Musical Diversity
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Sam Passmore and Patrick E. Savage
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music ,diversity ,cross-cultural ,Consciousness. Cognition ,BF309-499 - Abstract
Global music diversity is a popular topic for both scientific and humanities researchers, but often for different reasons. Scientific research typically focuses on the generalities through measurement and statistics, while humanists typically emphasize exceptions using qualitative approaches. But these two approaches need not be mutually exclusive. Using a quantitative approach to identify musical outliers and a qualitative discussion of the most unusual songs, we can combine scientific and humanities approaches to unite knowledge on musical diversity. Objectively defining unusual music is a delicate task, having historically been subject to Eurocentric approaches. Using the Global Jukebox, a dataset containing almost 6,000 songs from over 1,000 societies coded on 37 “Cantometric” variables of musical style, we designate the unusualness of a song as the frequency of its coded variables relative to their regional frequency. Using quantitative metrics to identify outliers in musical diversity, we present a qualitative discussion of some of the most unusual individual songs (from a Panpipe ensemble from Kursk, Russia), and a comparison of unusual repertoires from Malay, Kel Aïr, and Moroccan Berber musical cultures. We also ask whether unusual music is the result of unusual social organisation or isolation from other groups. There is weak evidence that the unusualness of music is predicted by kinship organisation and cultural isolation, but these predictors are heavily outweighed by the finding that unusual songs are best predicted by knowing the society they come from – evidence that quantitatively supports the existence of musical style.
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- 2023
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17. Protocol to develop component additivity models that predict oil yield from hydrothermal liquefaction
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Mahadevan Subramanya Seshasayee and Phillip E. Savage
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Energy ,Chemistry ,Environmental sciences ,Science (General) ,Q1-390 - Abstract
Summary: Here, we describe steps for performing hydrothermal liquefaction (HTL) experiments and developing component additivity models that predict oil yields from HTL of mixtures with biomass and plastics. Such models could be developed for predicting outcomes from any thermochemical valorization process (e.g., pyrolysis) for any feedstock. The HTL protocol explains experiments with both a single component and mixture. The model is constrained to the specific plastic feedstocks and solvents for product recovery used in the experiments.For complete details on the use and execution of this protocol, please refer to Seshasayee et al. (2021). : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
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- 2022
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18. Green Chemistry: A Framework for a Sustainable Future
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Krishna N. Ganesh, Deqing Zhang, Scott J. Miller, Kai Rossen, Paul J. Chirik, Marisa C. Kozlowski, Julie B. Zimmerman, Bryan W. Brooks, Phillip E. Savage, David T. Allen, and Adelina M. Voutchkova-Kostal
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Chemistry ,QD1-999 - Published
- 2021
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19. Perceptual vs. automated judgements of music copyright infringement.
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Yuchen Yuan, Sho Oishi, Charles Cronin, Daniel Müllensiefen, Quentin D. Atkinson, Shinya Fujii, and Patrick E. Savage
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- 2020
20. Do senior faculty members produce fewer research publications than their younger colleagues? Evidence from Ph.D. granting institutions in the United States.
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William E. Savage and Anthony J. Olejniczak
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- 2021
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21. Genome-wide meta-analysis of brain volume identifies genomic loci and genes shared with intelligence
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Philip R. Jansen, Mats Nagel, Kyoko Watanabe, Yongbin Wei, Jeanne E. Savage, Christiaan A. de Leeuw, Martijn P. van den Heuvel, Sophie van der Sluis, and Danielle Posthuma
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Science - Abstract
Brain volume and intelligence have been previously found to have shared genetic etiology, but the specific common genetic signals have not been identified. Here, the authors perform a genome-wide association study on brain volume, finding common genetic loci driving brain volume and intelligence.
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- 2020
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22. Dietary alterations modulate the microRNA 29/30 and IGF-1/AKT signaling axis in breast Cancer liver metastasis
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Anuradha A. Shastri, Anthony Saleh, Jason E. Savage, Tiziana DeAngelis, Kevin Camphausen, and Nicole L. Simone
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Liver ,Diet ,Calorie restriction ,Fasting ,microRNA ,Insulin signaling ,Nutrition. Foods and food supply ,TX341-641 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background Metastatic cancer is incurable and understanding the molecular underpinnings is crucial to improving survival for our patients. The IGF-1/Akt signaling pathway is often impaired in cancer leading to its progression and metastases. Diet modification is known to alter the IGF-1/Akt pathway and affect the expression of microRNA involved in tumor initiation, growth and metastases. Liver metastases are one of the most common type of metastases in breast and colon cancer. In the present study, we looked at the effect of diet modification on the expression of microRNA in normal liver and liver with breast cancer metastases using in vivo model. Methodology 6-month-old C57BL/6 J mice were put on either an ad libitum (AL) diet, or 40% calorie restricted (CR) diet or were fasted for 24 h (FA) before sacrifice. MicroRNA array analysis, western blot and qRT-PCR were performed using liver tissue to compare the treatment groups. A breast cancer model was also used to study the changes in microRNA expression in liver of a group of BALB/c mice orthotopically injected with 4 T1 cells in the mammary fat pad, put on either an AL or 30% CR diet. Liver and primary tumor tissues were used to perform qRT-PCR to compare the treatment groups. Results MicroRNA array analysis showed significant changes in miRNA expression in both CR and FA conditions in normal liver. Expression of miR-29 and miR-30 family members was increased in both CR and FA. Western blot analysis of the normal liver tissue showed that CR and FA downregulated the IGF-1/Akt pathway and qRT-PCR showed that the expression of miR-29b, miR-29c, miR-30a and miR-30b were increased with CR and FA. Liver tissue collected from mice in the breast cancer model showed an increase in expression of miR-29b, miR-29c and miR-30b while tumor tissue showed increased expression of miR-29c, miR-30a and miR-30b. Discussion Members of the miR-29 family are known to target and suppress IGF-1, while members of the miR-30 family are known to target and suppress both IGF-1 and IGF-1R. In the present study, we observe that calorie restriction increased the expression of miR-29 and miR-30 in both the normal liver as well as the liver with breast cancer metastases. These findings suggest that dietary alterations may play a role in the treatment of liver metastasis, which should be evaluated further.
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- 2020
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23. Novel disease state model finds most juvenile green turtles develop and recover from fibropapillomatosis
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Jake R. Kelley, Kayla L. Kelley, Anna E. Savage, and Kate L. Mansfield
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Chelonia mydas ,disease ecology ,fibropapillomatosis ,green sea turtle ,hierarchical Bayesian modeling ,Indian River Lagoon ,Ecology ,QH540-549.5 - Abstract
Abstract Fibropapillomatosis (FP) is a sea turtle disease characterized by benign tumor development on the skin, eyes, and/or internal organs. It primarily affects juvenile green turtles (Chelonia mydas) in coastal foraging sites. The Indian River Lagoon (IRL), Florida, USA, is a coastal green turtle foraging site where the observed FP annual rate averaged 49% between 1983 and 2018. While FP is no longer considered a major cause of sea turtle mortality and most individuals fully recover, the overall dynamics of this disease are poorly understood because prior disease history is unknown for individuals without FP at capture time, and future disease outcome is unknown for individuals with FP at capture time. To better evaluate FP dynamics for green turtles in the IRL, we developed a hierarchical model for predicting disease state change. We used data from 4149 captures of 3700 individual green turtles captured in the IRL. The hierarchical disease state model contained two levels: Level 1 modeled whether an individual would develop FP, and Level 2 modeled disease state progression, including states for pre‐FP affliction, active FP affliction, and full recovery from FP. From the hierarchical model, we estimated 99.8% (95% credibility intervals 99.1%–100%) of juvenile green turtles in the IRL developed FP, indicating that nearly every individual in the IRL is affected by this disease. The model also suggested that turtles quickly developed FP upon recruitment to the IRL and then recovered at different rates, with most completely recovering before emigrating from the IRL as they mature. This is the first analysis of long‐term sea turtle data suggesting nearly every turtle in an aggregation both develops and recovers from FP.
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- 2022
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24. Adaptive evolution of major histocompatibility complex class I immune genes and disease associations in coastal juvenile sea turtles
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Katherine R. Martin, Katherine L. Mansfield, and Anna E. Savage
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immunogenetics ,emerging infectious diseases ,testudines ,supertype ,major histocompatibility complex ,fibropapillomatosis ,Science - Abstract
Characterizing polymorphism at the major histocompatibility complex (MHC) genes is key to understanding the vertebrate immune response to disease. Despite being globally afflicted by the infectious tumour disease fibropapillomatosis (FP), immunogenetic variation in sea turtles is minimally explored. We sequenced the α1 peptide-binding region of MHC class I genes (162 bp) from 268 juvenile green (Chelonia mydas) and 88 loggerhead (Caretta caretta) sea turtles in Florida, USA. We recovered extensive variation (116 alleles) and trans-species polymorphism. Supertyping analysis uncovered three functional MHC supertypes corresponding to the three well-supported clades in the phylogeny. We found significant evidence of positive selection at seven amino acid sites in the class I exon. Random forest modelling and risk ratio analysis of Ch. mydas alleles uncovered one allele weakly associated with smooth FP tumour texture, which may be associated with disease outcome. Our study represents the first characterization of MHC class I diversity in Ch. mydas and the largest sample of sea turtles used to date in any study of adaptive genetic variation, revealing tremendous genetic variation and high adaptive potential to viral pathogen threats. The novel associations we identified between MHC diversity and FP outcomes in sea turtles further highlight the importance of evaluating genetic predictors of disease, including MHC and other functional markers.
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- 2022
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25. The Rhythms of Scholarly Publication: Suggestions to Enhance Bibliometric Comparisons Across Disciplines
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Anthony J. Olejniczak, William E. Savage, and Richard Wheeler
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bibliometrics ,higher education research ,academic publishing ,academic disciplines ,research evaluation ,Bibliography. Library science. Information resources - Published
- 2022
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26. More journal articles and fewer books: Publication practices in the social sciences in the 2010's.
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William E Savage and Anthony J Olejniczak
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Medicine ,Science - Abstract
The number of scholarly journal articles published each year is growing, but little is known about the relationship between journal article growth and other forms of scholarly dissemination (e.g., books and monographs). Journal articles are the de facto currency of evaluation and prestige in STEM fields, but social scientists routinely publish books as well as articles, representing a unique opportunity to study increased article publications in disciplines with other dissemination options. We studied the publishing activity of social science faculty members in 12 disciplines at 290 Ph.D. granting institutions in the United States between 2011 and 2019, asking: 1) have publication practices changed such that more or fewer books and articles are written now than in the recent past?; 2) has the percentage of scholars actively participating in a particular publishing type changed over time?; and 3) do different age cohorts evince different publication strategies? In all disciplines, journal articles per person increased between 3% and 64% between 2011 and 2019, while books per person decreased by at least 31% and as much as 54%. All age cohorts show increased article authorship over the study period, and early career scholars author more articles per person than the other cohorts in eight disciplines. The article-dominated literatures of the social sciences are becoming increasingly similar to those of STEM disciplines.
- Published
- 2022
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27. The Global Jukebox: A public database of performing arts and culture.
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Anna L C Wood, Kathryn R Kirby, Carol R Ember, Stella Silbert, Sam Passmore, Hideo Daikoku, John McBride, Forrestine Paulay, Michael J Flory, John Szinger, Gideon D'Arcangelo, Karen Kohn Bradley, Marco Guarino, Maisa Atayeva, Jesse Rifkin, Violet Baron, Miriam El Hajli, Martin Szinger, and Patrick E Savage
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Medicine ,Science - Abstract
Standardized cross-cultural databases of the arts are critical to a balanced scientific understanding of the performing arts, and their role in other domains of human society. This paper introduces the Global Jukebox as a resource for comparative and cross-cultural study of the performing arts and culture. The Global Jukebox adds an extensive and detailed global database of the performing arts that enlarges our understanding of human cultural diversity. Initially prototyped by Alan Lomax in the 1980s, its core is the Cantometrics dataset, encompassing standardized codings on 37 aspects of musical style for 5,776 traditional songs from 1,026 societies. The Cantometrics dataset has been cleaned and checked for reliability and accuracy, and includes a full coding guide with audio training examples (https://theglobaljukebox.org/?songsofearth). Also being released are seven additional datasets coding and describing instrumentation, conversation, popular music, vowel and consonant placement, breath management, social factors, and societies. For the first time, all digitized Global Jukebox data are being made available in open-access, downloadable format (https://github.com/theglobaljukebox), linked with streaming audio recordings (theglobaljukebox.org) to the maximum extent allowed while respecting copyright and the wishes of culture-bearers. The data are cross-indexed with the Database of Peoples, Languages, and Cultures (D-PLACE) to allow researchers to test hypotheses about worldwide coevolution of aesthetic patterns and traditions. As an example, we analyze the global relationship between song style and societal complexity, showing that they are robustly related, in contrast to previous critiques claiming that these proposed relationships were an artifact of autocorrelation (though causal mechanisms remain unresolved).
- Published
- 2022
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28. Component additivity model for plastics—biomass mixtures during hydrothermal liquefaction in sub-, near-, and supercritical water
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Mahadevan Subramanya Seshasayee, Rachel Stofanak, and Phillip E. Savage
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Chemical engineering ,Process engineering ,Biomass ,Energy Resources ,Energy Systems ,Science - Abstract
Summary: We produced oils via hydrothermal liquefaction (HTL) of binary mixtures of biomass components (e.g., lignin, cellulose, starch) with different plastics and binary mixtures of plastics themselves. Cellulose, starch, and lignin demonstrated synergistic interactions (i.e., enhanced oil yields) with the plastics tested (polypropylene, polycarbonate, polystyrene, and polyethylene terephthalate). Polystyrene exhibited synergy during HTL with the three other plastics as did polypropylene during HTL with PET or PC. We used the experimental results to develop the first component-additivity model that predicts the oil yields from HTL of biomass-plastic and plastic-plastic mixtures. The model accounts for interactions among and between biomass components and plastic components in sub-, near-, and supercritical water. The model predicts 88% of 48 published oil yields from HTL experiments with mixtures containing plastics to within 10 wt%.
- Published
- 2021
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29. Genetic mapping and evolutionary analysis of human-expanded cognitive networks
- Author
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Yongbin Wei, Siemon C. de Lange, Lianne H. Scholtens, Kyoko Watanabe, Dirk Jan Ardesch, Philip R. Jansen, Jeanne E. Savage, Longchuan Li, Todd M. Preuss, James K. Rilling, Danielle Posthuma, and Martijn P. van den Heuvel
- Subjects
Science - Abstract
Several cortical association areas have rapidly expanded in size during human evolution, including elements of the central cognitive default mode network (DMN). Here, the authors show that genes highly divergent between humans and other primates (HAR genes) are particularly expressed in these brain regions.
- Published
- 2019
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30. Genetic delimitation of Pristimantis orestes (Lynch, 1979) and P. saturninoi Brito et al., 2017 and description of two new terrestrial frogs from the Pristimantis orestes species group (Anura, Strabomantidae)
- Author
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Veronica L. Urgiles, Paul Székely, Diana Székely, Nicholas Christodoulides, Juan C. Sanchez-Nivicela, and Anna E. Savage
- Subjects
Zoology ,QL1-991 - Abstract
In the genus Pristimantis, species are often combined into taxonomic units called species groups. The taxonomy of these groups is frequently inaccurate due to the absence of genetic data from type series and repeated misidentifications generated by high morphological resemblance between taxa. Here, we focus on the P. orestes species group, providing the first genetic assessment of P. orestes sensu stricto from individuals collected from the type locality, with a reviewed diagnosis and description of advertisement calls. We find that two lineages previously named P. orestes are genetically distinct and should be separated into two different species. Based on genetic and morphological data, we name one of these species P. cajanuma sp. nov. This new species is morphologically distinct from other members of the group by having shagreen dorsal skin, evident dorsolateral folds, broader discs on toes and fingers and pale gray ventral coloration. Additionally, P. saturninoi is placed within the P. orestes species group based on genetic data from its type series. However, we find that one of its paratypes is genetically distinct and belongs to a clade containing a new species we name P. quintanai sp. nov. This new species is morphologically distinguished by lacking a tympanic membrane and vocal sacs in males, and by having expanded discs on toes and fingers, finely tuberculated dorsal skin and irregular white or cream spots in the groin and concealed surfaces of thighs. Our findings highlight the importance of providing genetic characterization and placement from the type series in taxonomic challenging groups, such as Pristimantis. We also suggest that the diversity of species within the P. orestes group will increase as more sampling is achieved in the southern Andes of Ecuador.
- Published
- 2019
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- View/download PDF
31. The genetic overlap between Alzheimer’s disease, amyotrophic lateral sclerosis, Lewy body dementia, and Parkinson’s disease
- Author
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Douglas P. Wightman, Jeanne E. Savage, Elleke Tissink, Cato Romero, Iris E. Jansen, Danielle Posthuma, Complex Trait Genetics, Amsterdam Neuroscience - Complex Trait Genetics, Amsterdam Neuroscience - Brain Imaging, Human genetics, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, and Amsterdam Reproduction & Development (AR&D)
- Subjects
Aging ,Parkinson's disease ,General Neuroscience ,Global genetic correlation ,Genetic overlap ,Alzheimer's disease ,Amyotrophic lateral sclerosis ,SDG 3 - Good Health and Well-being ,Neurology (clinical) ,Lewy body dementia ,Geriatrics and Gerontology ,Local genetic correlation ,Developmental Biology - Abstract
Neurodegenerative diseases are a group of disorders characterised by neuronal cell death causing a variety of physical and mental problems. While these disorders can be characterised by their phenotypic presentation within the nervous system, their aetiologies differ to varying degrees. Some disorders, such as Lewy body dementia and Parkinson’s disease, show overlap in the major proteins found in aggregates, and some diseases, like Alzheimer’s disease, amyotrophic lateral sclerosis, and Parkinson’s disease, are influenced by the same non-neuronal cell types (microglia), suggesting partly shared aetiologies. The identification of shared genetic risk factors common to many neurodegenerative diseases may highlight fundamental biological processes involved in neurodegeneration and provide promising targets for treatment and drug repurposing. The majority of genetic evidence for overlap between neurodegenerative diseases has been pairwise, with little genetic evidence for genes or biological processes found across more than two neurodegenerative diseases. In this study, we aimed to identify overlap between the four investigated neurodegenerative disorders (Alzheimer’s disease, amyotrophic lateral sclerosis, Lewy body dementia, and Parkinson’s disease) at the variant, gene, genomic locus, gene-set, cell, or tissue level, with specific interest in overlap between three or more diseases. Using local genetic correlation, we found that the TMEM175 locus was a shared locus between amyotrophic lateral sclerosis, Lewy body dementia, and Parkinson’s disease, and the HLA region was shared between Alzheimer’s disease, amyotrophic lateral sclerosis, and Parkinson’s disease. We also highlighted genes, genomic loci, gene-sets, cell types, and tissue types which may be important to two or more disorders by analysing the association of variants with a common factor estimated from the four disorders. Our study successfully highlighted genetic loci and tissues associated with two or more neurodegenerative diseases.
- Published
- 2023
- Full Text
- View/download PDF
32. Diversity and Disease: The Effects of Coral Diversity on Prevalence and Impacts of Stony Coral Tissue Loss Disease in Saint Thomas, U.S. Virgin Islands
- Author
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Sophia V. Costa, Stephanie J. Hibberts, Danielle A. Olive, Kayla A. Budd, Alexys E. Long, Sonora S. Meiling, Madyson B. Miller, Kelsey M. Vaughn, Claudia I. Carrión, Maksym B. Cohen, Annie E. Savage, Matthew F. Souza, Lorraine Buckley, Kristin W. Grimes, Renata Platenberg, Tyler B. Smith, Jeremiah Blondeau, and Marilyn E. Brandt
- Subjects
stony coral tissue loss disease ,US Virgin Islands ,coral disease ,diversity ,impacts ,reef ecosystems ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Stony coral tissue loss disease (SCTLD) was first observed in St. Thomas, U.S. Virgin Islands (USVI) in January 2019. This disease affects at least 20 scleractinian coral species; however, it is not well understood how reef diversity affects its spread or its impacts on reef ecosystems. With a large number of susceptible species, SCTLD may not follow the diversity-disease hypothesis, which proposes that high species diversity is negatively correlated with disease prevalence. Instead, SCTLD may have a higher prevalence and a greater impact on reefs with higher coral diversity. To test this, in 2020 we resampled 54 sites around St. Thomas previously surveyed in 2017 or 2019 by the National Oceanic and Atmospheric Administration National Coral Reef Monitoring Program. These sites represented a variety of species diversity values [categorized into poor (
- Published
- 2021
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33. Toward Robust Autotuning of Noisy Quantum Dot Devices.
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Joshua Ziegler, Thomas McJunkin, E. S. Joseph, Sandesh S. Kalantre, Benjamin Harpt, D. E. Savage, Mark G. Lagally, Mark A. Eriksson, Jacob M. Taylor, and Justyna P. Zwolak
- Published
- 2021
34. Author Correction: Genome-wide meta-analysis of brain volume identifies genomic loci and genes shared with intelligence
- Author
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Philip R. Jansen, Mats Nagel, Kyoko Watanabe, Yongbin Wei, Jeanne E. Savage, Christiaan A. de Leeuw, Martijn P. van den Heuvel, Sophie van der Sluis, and Danielle Posthuma
- Subjects
Science - Published
- 2022
- Full Text
- View/download PDF
35. Neutral Hydrolysis of Post-Consumer Polyethylene Terephthalate Waste in Different Phases
- Author
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Patrícia Pereira, Phillip E. Savage, and Christian W. Pester
- Subjects
Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,Environmental Chemistry ,General Chemistry - Published
- 2023
- Full Text
- View/download PDF
36. Statistical Models for Predicting Oil Composition from Hydrothermal Liquefaction of Biomass
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Seshasayee Mahadevan Subramanya, Nicholas Rios, Abbey Kollar, Rachel Stofanak, Katherine Maloney, Kayley Waltz, Lucas Powers, Chinmayee Rane, and Phillip E. Savage
- Subjects
Fuel Technology ,General Chemical Engineering ,Energy Engineering and Power Technology - Published
- 2023
- Full Text
- View/download PDF
37. Short-term, high-dose hydroxychloroquine corneal toxicity
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Daniel E. Savage, Ronald Plotnik, and Rachel A.F. Wozniak
- Subjects
Hydroxychloroquine ,Vortex keratopathy ,Clinical trial ,Ophthalmology ,RE1-994 - Abstract
Purpose: To describe the corneal findings and management of a 61-year-old female with vortex keratopathy following short term, high dose hydroxychloroquine used in the setting of a clinical trial for recurrent breast cancer. Observations: The patient was found to have significant corneal vortex keratopathy without retinal pathology within 3 months of 1200 mg daily hydroxychloroquine treatment as an adjuvant medication for cancer therapy. Cessation of the medication led to the resolution of the corneal verticillata within 1 month yet the vision did not return to baseline. Ultimately, remaining irregular astigmatism and ocular surface disease required a scleral contact lens to achieve a BSCVA of 20/25 OU. Conclusions and Importance: Hydroxychloroquine-induced vortex keratopathy is largely considered dose and duration dependent and is uncommon with most standard treatment algorithms. However, with increasing use of high-dose hydroxychloroquine in adjunct cancer therapy, corneal findings are likely to become more frequent. Persistent visual impairment may occur, thus increased understanding of this pathology can aid in counseling patients and guiding treatment recommendations.
- Published
- 2020
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38. [11C]metomidate PET-CT versus adrenal vein sampling for diagnosing surgically curable primary aldosteronism: A prospective, within-patient trial
- Author
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X, Wu, primary, R, Senanayake, additional, E, Goodchild, additional, WA, Bashari, additional, J, Salsbury, additional, CP, Cabrera, additional, G, Argentesi, additional, SM, O'Toole, additional, M, Matson, additional, B, Koo, additional, L, Parvanta, additional, N, Hilliard, additional, V, Kosmoliaptsis, additional, A, Marker, additional, DM, Berney, additional, W, Tan, additional, R, Foo, additional, CA, Mein, additional, E, Wozniak, additional, E, Savage, additional, A, Sahdev, additional, N, Bird, additional, K, Laycock, additional, I, Boros, additional, S, Hader, additional, V, Warnes, additional, D, Gillett, additional, A, Dawnay, additional, E, Adeyeye, additional, A, Prete, additional, AE, Taylor, additional, W, Arlt, additional, AN, Bhuva, additional, F, Aigbirhio, additional, C, Manisty, additional, A, McIntosh, additional, A, McConnachie, additional, JK, Cruickshank, additional, H, Cheow, additional, M, Gurnell, additional, WM, Drake, additional, and MJ, Brown, additional
- Published
- 2023
- Full Text
- View/download PDF
39. Electroplating on Unconventional Ultra-Compliant Substrates for Travelling Wave Tube Amplifiers
- Author
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Chaudhary, Anjali, primary, Prakash, Divya J., additional, Jacobson, R B, additional, A Scott, Shelley, additional, E Savage, Donald, additional, van der Weide, Daniel, additional, Lagally, Max, additional, and Cavallo, Francesca, additional
- Published
- 2023
- Full Text
- View/download PDF
40. Internalizing and externalizing subtypes of alcohol misuse and their relation to drinking motives
- Author
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Jeanne E, Savage, Danielle M, Dick, Complex Trait Genetics, and Amsterdam Neuroscience - Complex Trait Genetics
- Subjects
Alcohol misuse ,Motivation ,Alcohol Drinking ,Ethanol ,Medicine (miscellaneous) ,Anxiety ,Toxicology ,Binge Drinking ,Alcoholism ,Young Adult ,Psychiatry and Mental health ,Clinical Psychology ,Typology ,SDG 3 - Good Health and Well-being ,Humans ,College students ,Drinking motives ,Latent class - Abstract
Background: Several typologies have proposed two etiological pathways involved in the development of alcohol misuse which are associated with the internalizing and externalizing domains of psychopathology, respectively. This study's aim was to investigate this typology in a young adult sample, and test whether drinking motives, specifically drinking for negative or positive reinforcement, may provide a plausible mechanism characterizing these pathways. Method: Mixture modeling was conducted on a set of internalizing (anxiety, depression, neuroticism), externalizing (antisocial behavior, conscientiousness, sensation seeking, drug use), and alcohol misuse items (binge drinking, alcohol use disorder symptoms [AUDsx]) measured by self-report in a sample of 9,807 college students. Linear regression and chi-square tests were used to determine how latent class membership was associated with drinking motives, demographics, and personality characteristics. Results: The model identified 3 latent classes: a Low Risk class (70%), an Internalizing class (19%) with elevated levels of internalizing traits/symptoms and AUDsx, and an Externalizing class (10%) with elevated levels of externalizing traits/symptoms and both binge drinking and AUDsx. All drinking motives were substantially elevated in the Internalizing and Externalizing (vs Low Risk) classes (p < 3.0E-10), while positive reinforcement motives were specifically elevated in the Externalizing (vs Internalizing) class (p < 2.0E-55). Personality comparisons further emphasized the relevance of class distinctions. Conclusions: These findings provide additional support for both a specific internalizing and a broadband externalizing association with subtypes of alcohol misuse. Drinking motives may be useful intermediate indicators of these different risk processes.
- Published
- 2023
- Full Text
- View/download PDF
41. A survey of Roman, medieval and post-medieval coin finds from Scotland 2016–20
- Author
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Ella B Paul, Emily A Freeman, and Carl E Savage
- Subjects
Ecology ,Insect Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Coins and other numismatic finds from 276 locations across Scotland are listed and discussed.
- Published
- 2022
- Full Text
- View/download PDF
42. Disentangling Genetic Risks for Metabolic Syndrome
- Author
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Eva S. van Walree, Iris E. Jansen, Nathaniel Y. Bell, Jeanne E. Savage, Christiaan de Leeuw, Max Nieuwdorp, Sophie van der Sluis, Danielle Posthuma, Complex Trait Genetics, Amsterdam Neuroscience - Neurodegeneration, Amsterdam Neuroscience - Complex Trait Genetics, Internal medicine, ACS - Diabetes & metabolism, AGEM - Endocrinology, metabolism and nutrition, Human genetics, Amsterdam Neuroscience - Mood, Anxiety, Psychosis, Stress & Sleep, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, Amsterdam Reproduction & Development (AR&D), ARD - Amsterdam Reproduction and Development, Experimental Vascular Medicine, Vascular Medicine, and AGEM - Amsterdam Gastroenterology Endocrinology Metabolism
- Subjects
Metabolic Syndrome ,Blood Glucose ,Endocrinology, Diabetes and Metabolism ,Cholesterol, HDL ,Blood Pressure ,Glucose ,Diabetes Mellitus, Type 2 ,Fenofibrate ,SDG 3 - Good Health and Well-being ,Risk Factors ,Internal Medicine ,Humans ,Waist Circumference ,Triglycerides ,Genome-Wide Association Study - Abstract
A quarter of the world’s population is estimated to meet the criteria for metabolic syndrome, a cluster of cardiometabolic risk factors that promote development of coronary artery disease and type II diabetes, leading to increased risk of premature death and significant health costs. In this study we investigate whether the genetics associated with metabolic syndrome components mirror their phenotypic clustering. A multivariate approach that leverages genetic correlations between fasting glucose, high-density lipoprotein cholesterol, systolic blood pressure, triglycerides, and waist circumference was used; which revealed that these genetic correlations are best captured by a genetic one factor model. The common genetic factor genome-wide association study (GWAS) detects 235 associated loci, 174 more than the largest GWAS on metabolic syndrome to date. Of these loci, 53 (22.5%) overlap with loci identified for two or more metabolic syndrome components, indicating that metabolic syndrome is a complex, heterogeneous disorder. Associated loci harbour genes that show increased expression in the brain, especially in GABAergic and dopaminergic neurons. A polygenic risk score drafted from the metabolic syndrome factor GWAS predicts 5.9% of the variance in metabolic syndrome. These results provide mechanistic insights in the genetics of metabolic syndrome and suggestions for drug targets, especially fenofibrate, which has the promise of tackling multiple metabolic syndrome components.
- Published
- 2022
- Full Text
- View/download PDF
43. Extending the coherence of a quantum dot hybrid qubit
- Author
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Brandur Thorgrimsson, Dohun Kim, Yuan-Chi Yang, L. W. Smith, C. B. Simmons, Daniel R. Ward, Ryan H. Foote, J. Corrigan, D. E. Savage, M. G. Lagally, Mark Friesen, S. N. Coppersmith, and M. A. Eriksson
- Subjects
Physics ,QC1-999 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Quantum information: improving semiconducting qubit performance Researchers in the United States demonstrate high tunability of spin qubits in silicon-based quantum dots. Mark Eriksson at the University of Wisconsin-Madison and colleagues have achieved more than a tenfold improvement in the performance of these three-electron double dot qubits by tuning the electric fields used to confine electrons to quantum dots to a regime where the qubit was predicted to be much less susceptible to the effects of charge noise. Since charge noise limits the performance of many such qubits, these findings provide a path toward the fabrication of electrically gated qubits in silicon quantum dots with very high fidelities.
- Published
- 2017
- Full Text
- View/download PDF
44. 'Solutions in Search of a Problem': Commentary on Videira and Rosa (2017)
- Author
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Patrick E. Savage
- Subjects
music information retrieval ,computational ethnomusicology ,sampling ,Music ,M1-5000 - Abstract
This commentary offers a review of Videira and Rosa's attempt to construct and validate an online corpus of fado transcriptions. While I support their application of music information retrieval (MIR) tools to diverse musical repertoires, I fear that a lack of clarity in their goals leads them to fall into the trap of finding "solutions in search of a problem" that is common in computational ethnomusicology. I highlight ways in which I believe they could improve future work on this project, including: 1) more interdisciplinary collaboration, 2) more clarity in their goals, and 3) the use of corpora and tools that are more suitable for comparing the symbolic data contained in their database of musical transcriptions.
- Published
- 2018
- Full Text
- View/download PDF
45. Associated Genetics and Connectomic Circuitry in Schizophrenia and Bipolar Disorder
- Author
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Yongbin Wei, Siemon C. de Lange, Jeanne E. Savage, Elleke Tissink, Ting Qi, Jonathan Repple, Marius Gruber, Tilo Kircher, Udo Dannlowski, Danielle Posthuma, Martijn P. van den Heuvel, Human genetics, Amsterdam Neuroscience - Complex Trait Genetics, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, Amsterdam Reproduction & Development (AR&D), Complex Trait Genetics, Amsterdam Neuroscience - Systems & Network Neuroscience, Amsterdam Neuroscience - Brain Imaging, and Amsterdam Neuroscience - Cellular & Molecular Mechanisms
- Subjects
Connectivity ,Polygenic score ,Genetics ,GWAS ,Biological Psychiatry ,Imaging - Abstract
BACKGROUND: Schizophrenia (SCZ) and bipolar disorder (BD) are severe psychiatric conditions that can involve symptoms of psychosis and cognitive dysfunction. The 2 conditions share symptomatology and genetic etiology and are regularly hypothesized to share underlying neuropathology. Here, we examined how genetic liability to SCZ and BD shapes normative variations in brain connectivity.METHODS: We examined the effect of the combined genetic liability for SCZ and BD on brain connectivity from two perspectives. First, we examined the association between polygenic scores for SCZ and BD for 19,778 healthy subjects from the UK Biobank and individual variation in brain structural connectivity reconstructed by means of diffusion weighted imaging data. Second, we conducted genome-wide association studies using genotypic and imaging data from the UK Biobank, taking SCZ-/BD-involved brain circuits as phenotypes of interest.RESULTS: Our findings showed brain circuits of superior parietal and posterior cingulate regions to be associated with polygenic liability for SCZ and BD, circuitry that overlaps with brain networks involved in disease conditions (r = 0.239, p < .001). Genome-wide association study analysis showed 9 significant genomic loci associated with SCZ-involved circuits and 14 loci associated with BD-involved circuits. Genes related to SCZ-/BD-involved circuits were significantly enriched in gene sets previously reported in genome-wide association studies for SCZ and BD.CONCLUSIONS: Our findings suggest that polygenic liability of SCZ and BD is associated with normative individual variation in brain circuitry.
- Published
- 2023
- Full Text
- View/download PDF
46. Building Sustainable Global Collaborative Networks: Recommendations from Music Studies and the Social Sciences
- Author
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Patrick E. Savage, Nori Jacoby, Elizabeth H. Margulis, Hideo Daikoku, Manuel Anglada-Tort, Salwa El-Sawan Castelo-Branco, Florence Ewomazino Nweke, Shinya Fujii, Shantala Hegde, Hu Chuan-Peng, Jason Jabbour, Casey Lew-Williams, Diana Mangalagiu, Rita McNamara, Daniel Müllensiefen, Patricia Opondo, Aniruddh D. Patel, and Huib Schippers
- Published
- 2023
- Full Text
- View/download PDF
47. Dead Sea: New Discoveries in the Cave of Letters
- Author
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Carl E. Savage, Philip Reeder, Richard A. Freund, Harry M. Jol
- Published
- 2018
48. Automatic Tune Family Identification by Musical Sequence Alignment.
- Author
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Patrick E. Savage and Quentin D. Atkinson
- Published
- 2015
49. Effect of Germanium Surface Orientation on Graphene Chemical Vapor Deposition and Graphene-Induced Germanium Nanofaceting
- Author
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Robert M. Jacobberger, Donald E. Savage, Xiaoqi Zheng, Pornsatit Sookchoo, Richard Rojas Delgado, Max G. Lagally, and Michael S. Arnold
- Subjects
General Chemical Engineering ,Materials Chemistry ,General Chemistry - Published
- 2022
- Full Text
- View/download PDF
50. Crystallographic Rotation during Solid-Phase Epitaxy of SrTiO3 from Nanoscale Seed Crystals
- Author
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Samuel D. Marks, Rui Liu, Yajin Chen, Qian Li, Steven J. Leake, Donald E. Savage, Susan E. Babcock, Tobias U. Schülli, and Paul G. Evans
- Subjects
General Materials Science ,General Chemistry ,Condensed Matter Physics - Published
- 2022
- Full Text
- View/download PDF
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