366 results on '"E. Jahn"'
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2. P456: A LONG READ SEQUENCING AND CRISPR-CAS9 BASED APPROACH FOR RAPID COPY-NUMBER ALTERATION AND STRUCTURAL VARIATION DETECTION IN HEMATOLOGIC MALIGNANCIES
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J. Schrezenmeier, J. E. Straeng, O. Blau, A. Elashy, A. Lazarides, S. Skambraks, E. Jahn, B. Gillißen, C. Eckert, A. Nogai, I.-W. Blau, K. Giannopoulos, M. Heuser, K. Döhner, L. Bullinger, and A. Dolnik
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2022
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3. P1055: CLINICAL AND GENETIC RESULTS OF THE PHASE IB/II TRIAL MPNSG-0212: RUXOLITINIB PLUS POMALIDOMIDE IN MYELOFIBROSIS WITH ANEMIA
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F. Stegelmann, E. Jahn, S. Koschmieder, F. Heidel, A. Hochhaus, H. Hebart, S. Isfort, A. Reiter, M. Bangerter, C. F. Waller, D. Wolleschak, C. Scheid, J. Göthert, P. Schafhausen, T. Kindler, M. P. Radsak, N. Gattermann, R. Möhle, N. von Bubnoff, A. Schrade, T. Brümmendorf, H. Döhner, M. Griesshammer, and K. Döhner
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2022
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4. Potato Soil Core Microbiomes Are Regionally Variable Across the Continental United States
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Scott A. Klasek, James E. Crants, Touqeer Abbas, Katherine Ashley, Marian L. Bolton, Madelyn Celovsky, Neil C. Gudmestead, Jianjun Hao, Jorge R. Ibarra Caballero, Courtney E. Jahn, Gilbert Kamgan Nkuekam, Richard A. Lankau, Robert P. Larkin, Eglantina Lopez-Echartea, Jeff Miller, Amber Moore, Julie S. Pasche, Matthew D. Ruark, Brenda K. Schroeder, Shan Shan, Victoria P. Skillman, Ali Srour, Anna K. Stasko, Kurt Steinke, Jane E. Stewart, Mike Thornton, Kim Zitnick-Anderson, Kenneth E. Frost, Carl J. Rosen, and Linda L. Kinkel
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agriculture ,microbiome ,soils ,Plant culture ,SB1-1110 ,Microbial ecology ,QR100-130 ,Plant ecology ,QK900-989 - Abstract
Soil microbiomes play crucial roles in pathogen suppression, nutrient mobilization, and maintenance of plant health. Their complexity and variability across spatial and temporal scales provide challenges for identifying common targets—microbial taxa or assemblages—for management in agricultural systems. To understand how microbiomes in potato production soils vary across growing regions and identify commonly distributed taxa among them, we compiled a continental-scale bacterial and eukaryotic amplicon dataset of over 1,300 communities with corresponding edaphic measurements from nine U.S. field sites. Field site explained most of the variance across bacterial and eukaryotic (predominantly fungal) communities, while pH and organic matter as well as nitrate, phosphate, and potassium concentrations also varied with community structure. Bacterial and eukaryotic potato soil microbiomes showed consistent phylum-level composition across locations at the continental scale, with regional-scale differences evident among genera and amplicon sequence variants (ASVs). Core community analysis identified 606 bacterial and 74 eukaryotic ASVs, which were present, but unequally distributed, across all nine field sites. Many of these core ASVs belonged to common soil genera, such as Bacillus and Mortierella, which may reveal the functional potential involved in maintaining soil health across regionally variable soil systems.
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- 2024
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5. The Lying Stones of Dr. Johann Bartholomew Adam Beringer: Being his Lithographiae Wireceburgensis
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Melvin E. Jahn
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- 2023
6. Highly variable movements by Andean Flamingos ( Phoenicoparrus andinus ): implications for conservation and management
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Alex E Jahn, Joaquín Cereghetti, Michael T Hallworth, Ellen D Ketterson, Brandt Ryder, Peter P Marra, and Enrique Derlindati
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argentina ,lithium ,wetlands ,Ecology ,QH540-549.5 - Abstract
The Andean Flamingo ( Phoenicoparrus andinus ) is endemic to the central Andes Mountains, with the majority of the population distributed between Argentina, Bolivia, and Chile. It is the rarest of the six flamingo species on the planet and is one of the least studied flamingos. Little information exists about its annual cycle, including which wetlands individual Andean Flamingos use at different times of year, posing an obstacle to developing effective conservation planning for its populations. In 2020 and 2022, we attached GPS-enabled satellite transmitters to four Andean Flamingos in northwestern Argentina, tracking their movements throughout the year to provide an initial assessment of their movement patterns, including timing, rate, and distances of movements between wetlands. We found highly variable movement patterns between individual flamingos. After the breeding season, which they spend at high elevations, some flamingos moved northwards to overwinter in the central Andes of Bolivia, whereas others moved south to overwinter near sea level in the lowlands of central Argentina. All tracked flamingos moved rapidly between wetlands, some of which were used by multiple flamingos. One flamingo visited sites in Argentina, Bolivia, and Chile during one annual cycle, highlighting the need for international conservation cooperation. Given the growing threats to this species, including climate change and a recent, rapid increase in lithium mining, we call for further research on this and other flamingo species in the Andes.
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- 2023
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7. Adsorption Properties of the AlPO-5 molecular sieve
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U. Lohse, M. Noack, and E. Jahn
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Physical and theoretical chemistry ,QD450-801 - Abstract
The adsorption properties of AlPO 4 -5 samples have been studied by kinetic and equilibrium measurements using hydrocarbons and water as adsorbates. From the adsorption of hydrocarbons a non-polar surface of the AlPO 4 -5 molecular sieve is concluded. The peculiarities of water uptake are interpreted taking into account n.m.r. results as due to the formation of a crystal hydrate.
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- 1986
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8. Calorimetric Investigation of the Adsorption Properties of Microporous Aluminophosphate AlPO5
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H. Thamm, H. Stach, E. Jahn, and B. Fahlke
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Physical and theoretical chemistry ,QD450-801 - Abstract
Differential heats of adsorption have been measured calorimetrically for benzene and n -hexane on AlPO 4 -5. Adsorption isotherms have been determined for benzene, n -hexane and H 2 O. The heat of adsorption for benzene on AlPO 4 -5 was found to be less than the heat of adsorption for n -hexane. Isotherms of all adsorbates investigated exhibited hysteresis loops. The hydrophilicity of AlPO 4 -5 is explained by capillary condensation and/or coordinately bonded water.
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- 1986
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9. Interactions of free-living amoebae with the rice fungal pathogen, Rhizoctonia solani
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John J. Long, Emily K. Luna, Mary Jackson, William Wheat, Courtney E. Jahn, and Jan E. Leach
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Free-living amoebae ,Rhizoctonia solani ,Sheath blight ,Acanthamoeba ,Dictyostelium ,Vermamoeba ,Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Objective Rhizoctonia solani is a soil-borne fungal pathogen of many important crop plants. In rice, R. solani causes sheath blight disease, which results in devastating grain yield and quality losses. Few methods are available to control this pathogen and classic single gene resistance mechanisms in rice plants have not been identified. We hypothesize that alternate means of control are available in the environment including free-living amoebae. Amoebae are soil-, water- and air-borne microorganisms that are predominantly heterotrophic. Many amoeba species are mycophagous, and several harm their prey using mechanisms other than phagocytosis. Here, we used light and scanning electron microscopy to survey the interactions of R. solani with four amoeba species, with the goal of identifying amoebae species with potential for biocontrol. Results We observed a wide range of responses during interactions of R. solani with four different free-living amoebae. Two Acanthamoeba species encyst in co-cultures with R. solani at higher rates than medium without R. solani. Vermamoeba vermiformis (formerly Hartmanella vermiformis) attach to R. solani mycelium and are associated with mycelial shriveling and perforations of fungal cell walls, indicating an antagonistic interaction. No phenotypic changes were observed in co-cultures of Dictyostelium discoideum and R. solani.
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- 2019
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10. An open-source platform for sub-$$\textrm{g}$$, sub-$$\upmu$$A data loggers
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Geoffrey M. Brown, Jiawei Chen, Adam Fudickar, and Alex E. Jahn
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Computer Networks and Communications ,Signal Processing ,Animal Science and Zoology ,Instrumentation - Abstract
Background Rapid improvements in inexpensive, low-power, movement and environmental sensors have sparked a revolution in animal behavior research by enabling the creation of data loggers (henceforth, tags) that can capture fine-grained behavioral data over many months. Nevertheless, development of tags that are suitable for use with small species, for example, birds under 25 g, remains challenging because of the extreme mass (under 1$$\textrm{g}$$ g ) and power (average current under 1$$\upmu$$ μ A) constraints. These constraints dictate that a tag should carry exactly the sensors required for a given experiment and the data collection protocol should be specialized to the experiment. Furthermore, it can be extremely challenging to design hardware and software to achieve the energy efficiency required for long tag life. Results We present an activity monitor, BitTag, that can continuously collect activity data for 4–12 months at 0.5–0.8$$\textrm{g}$$ g , depending upon battery choice, and which has been used to collect more than 500,000 h of data in a variety of experiments. The BitTag architecture provides a general platform to support the development and deployment of custom sub-$$\textrm{g}$$ g tags. This platform consists of a flexible tag architecture, software for both tags and host computers, and hardware to provide the host/tag interface necessary for preparing tags for “flight” and for accessing tag data “post-flight”. We demonstrate how the BitTag platform can be extended to quickly develop novel tags with other sensors while satisfying the 1g/1$$\upmu$$ μ A mass and power requirements through the design of a novel barometric pressure sensing tag that can collect pressure and temperature data every 60$$\textrm{s}$$ s for a year with mass under 0.6$$\textrm{g}$$ g .
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- 2023
11. Novel Rickettsia spp. in two common overwintering North American songbirds
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Daniel J. Becker, Allison Byrd, Tara M. Smiley, Mariana Fernandes Marques, Julissa Villegas Nunez, Katherine M. Talbott, Jonathan W. Atwell, Dmitriy V. Volokhov, Ellen D. Ketterson, Alex E. Jahn, and Kerry L. Clark
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Infectious Diseases ,Epidemiology ,Virology ,Drug Discovery ,Immunology ,Parasitology ,General Medicine ,Microbiology - Published
- 2022
12. Spatiotemporal Post-Calibration in a Numerical Weather Prediction Model for Quantifying Building Energy Consumption
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Youngchan Jang, Eunshin Byon, Soham Vanage, Kristen Cetin, David E. Jahn, William Gallus, and Lance Manuel
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Control and Systems Engineering ,Electrical and Electronic Engineering - Published
- 2022
13. Interactions of free-living amoebae with rice bacterial pathogens Xanthomonas oryzae pathovars oryzae and oryzicola.
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John J Long, Courtney E Jahn, Andrea Sánchez-Hidalgo, William Wheat, Mary Jackson, Mercedes Gonzalez-Juarrero, and Jan E Leach
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Medicine ,Science - Abstract
BACKGROUND:Free-living amoebae (FLA) are voracious feeders, consuming bacteria and other microbes during colonization of the phytobiome. FLA are also known to secrete bacteriocidal or bacteriostatic compounds into their growth environment. METHODOLOGY AND PRINCIPAL FINDINGS:Here, we explore the impacts of co-cultivation of five FLA species, including Acanthamoeba castellanii, A. lenticulata, A. polyphaga, Dictyostelium discoideum and Vermamoeba vermiformis, on survival of two devastating bacterial pathogens of rice, Xanthomonas oryzae pathovars (pv.) oryzae and oryzicola. In co-cultivation assays, the five FLA species were either bacteriostatic or bactericidal to X. oryzae pv. oryzae and X. oryzae pv. oryzicola. Despite these effects, bacteria were rarely detected inside amoebal cells. Furthermore, amoebae did not disrupt X. oryzae biofilms. The bactericidal effects persisted when bacteria were added to a cell-free supernatant from amoebal cultures, suggesting some amoebae produce an extracellular bactericidal compound. CONCLUSIONS/SIGNIFICANCE:This work establishes novel, basal dynamics between important plant pathogenic bacteria and diverse amoebae, and lays the framework for future mechanistic studies.
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- 2018
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14. Animal Migration: An Overview of One of Nature's Great Spectacles
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Ellen D. Ketterson, Adam M. Fudickar, and Alex E. Jahn
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History ,Technological revolution ,Ecology ,Political economy ,Ecology, Evolution, Behavior and Systematics - Abstract
The twenty-first century has witnessed an explosion in research on animal migration, in large part due to a technological revolution in tracking and remote-sensing technologies, along with advances in genomics and integrative biology. We now have access to unprecedented amounts of data on when, where, and how animals migrate across various continents and oceans. Among the important advancements, recent studies have uncovered a surprising level of variation in migratory trajectories at the species and population levels with implications for both speciation and the conservation of migratory populations. At the organismal level, studies linking molecular and physiological mechanisms to traits that support migration have revealed a remarkable amount of seasonal flexibility in many migratory animals. Advancements in the theory for why animals migrate have resulted in promising new directions for empirical studies. We provide an overview of the current state of knowledge and promising future avenues of study.
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- 2021
15. A comparison of the technological, economic, public policy, and environmental factors of HVDC and HVAC interregional transmission
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Armando L. Figueroa-Acevedo, Michael S. Czahor, and David E. Jahn
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renewable energy ,wind energy ,transmission systems ,HVDC ,HVAC ,energy policy ,energy economics ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 ,Renewable energy sources ,TJ807-830 - Abstract
The design of an interregional high-voltage transmission system in the US is a revolutionary technological concept that will likely play a significant role in the planning and operation of future electric power systems. Historically, the primary justification for building interregional high-voltage transmission lines in the US and around the world has been based on economic and reliability criteria. Today, the implementation renewable portfolio standards, carbon emission regulations, the improvements in the performance of power electronic systems, and unused benefits associated with capacity exchange during times of non-coincident peak demand, are driving the idea of designing an interregional high-voltage transmission system in the US. However, there exist challenges related to technical, economic, public policy, and environmental factors that hinder the implementation of such a complex infrastructure. The natural skepticism from many sectors of the society, in regards to how will the system be operated, how much will it cost, and the environmental impact that it could potentially create are among the most significant challenges to its rapid implementation. This publication aims at illustrating the technological, environmental, economic, and policy challenges that interregional HV transmission systems face today in the US, looking specifically at the Clean Line Rock Island project in Iowa.
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- 2015
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16. Novel
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Daniel J, Becker, Allison, Byrd, Tara M, Smiley, Mariana Fernandes, Marques, Julissa Villegas, Nunez, Katherine M, Talbott, Jonathan W, Atwell, Dmitriy V, Volokhov, Ellen D, Ketterson, Alex E, Jahn, and Kerry L, Clark
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Songbirds ,North America ,Animals ,Seasons ,Rickettsia - Abstract
American robins and dark-eyed juncos migrate across North America and have been found to be competent hosts for some bacterial and viral pathogens, but their contributions to arthropod-borne diseases more broadly remain poorly characterized. Here, we sampled robins and juncos in multiple sites across North America for arthropod-borne bacterial pathogens of public health significance. We identified two novel
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- 2022
17. Loss of forest cover and host functional diversity increases prevalence of avian malaria parasites in the Atlantic Forest
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Márcio Repenning, Jean Carlos Ramos Silva, Carolina dos Anjos, Marcos Robalinho Lima, Janice H. Dispoto, Aline H. Correa, Carla Suertegaray Fontana, Alan Fecchio, Jeffrey A. Bell, Thaiane Weinert da Silva, Camile Lugarini, Jason D. Weckstein, Robert E. Ricklefs, Renata Beco, José Eduardo Garcia, Fabio Schunck, Gabriel Massaccesi De La Torre, Karin Kirchgatter, Vincenzo A. Ellis, Leontina H.M. Andrade, Érika Martins Braga, and Alex E. Jahn
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0301 basic medicine ,Plasmodium ,Malaria, Avian ,030231 tropical medicine ,Forests ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Avian malaria ,Deforestation ,parasitic diseases ,Prevalence ,medicine ,Animals ,Humans ,Parasites ,Phylogeny ,Bird Diseases ,Host (biology) ,Ecology ,respiratory system ,Haemosporida ,medicine.disease ,biology.organism_classification ,Phylogenetic diversity ,030104 developmental biology ,Infectious Diseases ,Vector (epidemiology) ,Parasitology ,Haemoproteus ,human activities ,Malaria - Abstract
Host phylogenetic relatedness and ecological similarity are thought to contribute to parasite community assembly and infection rates. However, recent landscape level anthropogenic changes may disrupt host-parasite systems by impacting functional and phylogenetic diversity of host communities. We examined whether changes in host functional and phylogenetic diversity, forest cover, and minimum temperature influence the prevalence, diversity, and distributions of avian haemosporidian parasites (genera Haemoproteus and Plasmodium) across 18 avian communities in the Atlantic Forest. To explore spatial patterns in avian haemosporidian prevalence and taxonomic and phylogenetic diversity, we surveyed 2241 individuals belonging to 233 avian species across a deforestation gradient. Mean prevalence and parasite diversity varied considerably across avian communities and parasites responded differently to host attributes and anthropogenic changes. Avian malaria prevalence (termed herein as an infection caused by Plasmodium parasites) was higher in deforested sites, and both Plasmodium prevalence and taxonomic diversity were negatively related to host functional diversity. Increased diversity of avian hosts increased local taxonomic diversity of Plasmodium lineages but decreased phylogenetic diversity of this parasite genus. Temperature and host phylogenetic diversity did not influence prevalence and diversity of haemosporidian parasites. Variation in the diversity of avian host traits that promote parasite encounter and vector exposure (host functional diversity) partially explained the variation in avian malaria prevalence and diversity. Recent anthropogenic landscape transformation (reduced proportion of native forest cover) had a major influence on avian malaria occurrence across the Atlantic Forest. This suggests that, for Plasmodium, host phylogenetic diversity was not a biotic filter to parasite transmission as prevalence was largely explained by host ecological attributes and recent anthropogenic factors. Our results demonstrate that, similar to human malaria and other vector-transmitted pathogens, prevalence of avian malaria parasites will likely increase with deforestation.
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- 2021
18. Novel Rickettsia spp. in two common overwintering North American passerines
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Daniel J. Becker, Allison Byrd, Tara M. Smiley, Mariana Fernandes Marques, Julissa Villegas Nunez, Katherine M. Talbott, Jonathan W. Atwell, Dmitriy V. Volokhov, Ellen D. Ketterson, Alex E. Jahn, and Kerry L. Clark
- Abstract
American robins and dark-eyed juncos migrate across North America, but their contributions to arthropod-borne disease remain poorly characterized. We identified novel Rickettsia spp. in one wintering migrant per bird species related to bellii, transitional, and spotted fever group rickettsiae and suggest spring migration could disperse these pathogens hundreds-to-thousands of kilometers.
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- 2022
19. Non-Targeted Metabolomics Reveals Sorghum Rhizosphere-Associated Exudates are Influenced by the Belowground Interaction of Substrate and Sorghum Genotype
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Sarah B. Miller, Adam L. Heuberger, Corey D. Broeckling, and Courtney E. Jahn
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GC-MS, LC-MS, metabolomics, root exudate, rhizosphere, sorghum ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Root exudation is an important plant process by which roots release small molecules into the rhizosphere that serve in overall plant functioning. Yet, there is a major gap in our knowledge in translating plant root exudation in artificial systems (i.e., hydroponics, sterile media) to crops, specifically for soils expected in field conditions. Sorghum (Sorghum bicolor L. Moench) root exudation was determined using both ultra-performance liquid chromatography and gas chromatography mass spectrometry-based non-targeted metabolomics to evaluate variation in exudate composition of two sorghum genotypes among three substrates (sand, clay, and soil). Above and belowground plant traits were measured to determine the interaction between sorghum genotype and belowground substrate. Plant growth and quantitative exudate composition were found to vary largely by substrate. Two types of changes to rhizosphere metabolites were observed: rhizosphere-enhanced metabolites (REMs) and rhizosphere-abated metabolites (RAMs). More REMs and RAMs were detected in sand and clay substrates compared to the soil substrate. This study demonstrates that belowground substrate influences the root exudate profile in sorghum, and that two sorghum genotypes exuded metabolites at different magnitudes. However, metabolite identification remains a major bottleneck in non-targeted metabolite profiling of the rhizosphere.
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- 2019
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20. A trophic niche shift in a South American migrant: Stable nitrogen isotope signatures in feathers of Fork-tailed Flycatchers (Tyrannus savana)
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Maggie P. MacPherson, Alex E. Jahn, Justin DeFreitas, Kooldeep Looknauth, Asaph Wilson, Leon Baird, Kayla DeFreitas, Susan Chiasson, and Caz Taylor
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Ecology ,Animal Science and Zoology ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
21. Sonations in Migratory and Non-migratory Fork-tailed Flycatchers (Tyrannus savana)
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John M. Bates, Diego T. Tuero, Valentina Gómez-Bahamón, María Isabel Castaño, Christopher J. Clark, Alex E. Jahn, Univ Illinois, SELVA Invest Conservac Neotrop, Field Museum Nat Hist, Univ Buenos Aires, Universidade Estadual Paulista (Unesp), and Univ Calif Riverside
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Male ,Tyrannus savana ,biology ,Zoology ,Plant Science ,Feathers ,Subspecies ,biology.organism_classification ,Flight feather ,Intraspecific competition ,Predation ,Animal Communication ,Songbirds ,Nest ,Flight, Animal ,Feather ,visual_art ,visual_art.visual_art_medium ,Animals ,Flutter ,Animal Science and Zoology ,Passeriformes - Abstract
Made available in DSpace on 2021-06-25T12:33:18Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-11-01 SELVA Society for the Study of Evolution American Ornithology Society Graduate Research Award Provost's Graduate Research Award from the University of Illinois at Chicago Field Museum's H. B. Conover Fund Society of Integrative and Comparative Biology Field Museum Armour Graduate Student Fellowship Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET-Argentina) Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) University of Buenos Aires Sonations are sounds that animals produce with structures other than the vocal apparatus for communication. In birds, many sonations are usually produced with modified flight feathers through diverse kinematic mechanisms. For instance, aeroelastic fluttering of feathers produces tonal sound when airflow exceeds a threshold velocity and induces flight feathers to oscillate at a constant frequency. The Fork-tailed flycatcher (Tyrannus savana) is a Neotropical bird with both migratory and year-round resident subspecies that differ in the shape of the outer primary feathers of their wings. By integrating behavioral observations, audio recordings, and high-speed videos, we find that male Fork-tailed flycatchers produce sonations with their outer primary feathers P8-10, and possibly P7. These sounds are produced during different behavioral contexts including: the pre-dawn display, intraspecific territorial disputes, when attacking potential nest predators, and when escaping. By placing feathers in a wind tunnel, we elicited flutter at frequencies that matched the acoustic signature of sounds recorded in the wild, indicating that the kinematic mechanism responsible for sound production is aeroelastic flutter. Video of wild birds indicated that sonations were produced during the downstroke. Finally, the feathers of migratory (T.s.savana) and year-round resident (T.s.monachus) Fork-tailed flycatchers flutter in feather locations that differ in shape between the subspecies, and these shape differences between the subspecies result in sounds produced at different frequencies. Univ Illinois, Dept Biol Sci, 845 West Taylor St,MC066, Chicago, IL 60607 USA SELVA Invest Conservac Neotrop, Diagonal 42a 20-37, Bogota, Colombia Field Museum Nat Hist, Negaunee Integrat Res Ctr, 1400 South Lake Shore Dr, Chicago, IL 60605 USA Univ Buenos Aires, Dept Ecol Genet & Evoluc, Fac Ciencias Exactas & Nat, Inst IEGEBA CONICET UBA, Ciudad Univ,C1428EGA, RA-2160 Buenos Aires, DF, Argentina Univ Estadual Paulista, Inst Biociencias, Dept Zool, Ave 24a,1515, Rio Claro, SP, Brazil Univ Calif Riverside, Dept Evolut Ecol & Organismal Biol, Riverside, CA 92521 USA Univ Estadual Paulista, Inst Biociencias, Dept Zool, Ave 24a,1515, Rio Claro, SP, Brazil FAPESP: 2012/17225-2
- Published
- 2020
22. Dietary ecology of two migrant flycatchers in habitats with and without cattle during the breeding season in central Argentina
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María Emilia Rebollo, Alex E. Jahn, César Adrián Stella, Lorenzo Pérez-Rodríguez, Fernando Gabriel López, José Hernán Sarasola, Joaquín Cereghetti, Fundação de Amparo à Pesquisa do Estado de São Paulo, Fundación Banco Santander, and Consejo Nacional de Investigaciones Científicas y Técnicas (Argentina)
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Ecology ,Ecology, Evolution, Behavior and Systematics ,Earth-Surface Processes - Abstract
Food selection is a key aspect of a bird's life history strategy, so understanding how birds respond to variation in food abundance is relevant to evaluating their general ecology and survival, and also the potential consequences of the degradation of environments impacted by livestock. We studied the dietary ecology of Vermilion Flycatchers (VEFL) and Fork-tailed Flycatchers (FTFL), two insectivores and Neotropical austral migrants, during their breeding season. We worked in areas with and without cattle ranching in the Espinal biome of La Pampa, Argentina. We found different arthropod prey abundance for both flycatchers according to arthropod orders and/or study sites, suggesting that livestock may impact food abundance. Both consumed similar prey and positively selected for hymenopterans and coleopterans, and FTFL also positively selected for orthopterans. VEFL selected nest sites with a lower abundance of heteropterans and FTFL selected sites with a higher abundance of coleopterans. Additionally, VEFL nest survival was negatively related to the abundance of hemipterans and FTFL nest survival was positively related to the abundance of coleopterans. This study helps fill gaps on the general ecology of species that breed in rangelands, and highlights the importance of similar studies to formulate effective conservation planning for the Espinal biome., This work was supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo, Brazil (Grant #2012/17225–2), a Fellowship “Iberoamérica - Santander Investigación" from Fundación Banco de Santander, and two Doctoral Fellowships from CONICET-Argentina.
- Published
- 2022
23. A Real-Time, Virtual Spring Forecasting Experiment to Advance Severe Weather Prediction
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Andrew R. Dean, William Miller, Pamela L. Heinselman, Kimberly A. Hoogewind, Katie A. Wilson, Montgomery L. Flora, Joshua Martin, Jake Vancil, Christopher A. Kerr, Adam J. Clark, Jidong Gao, Scott R. Dembek, Brian Matilla, David Harrison, Brett Roberts, Yunheng Wang, Nusrat Yussouf, Patrick S. Skinner, Nathan A. Dahl, Gerald J. Creager, Eric D. Loken, Burkely T. Gallo, Michael C. Coniglio, Kent H. Knopfmeier, David A. Imy, Louis J. Wicker, David E. Jahn, Jorge E. Guerra, Makenzie J. Krocak, Israel L. Jirak, and Thomas A. Jones
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Atmospheric Science ,geography ,geography.geographical_feature_category ,Severe weather ,Meteorology ,Spring (hydrology) ,Environmental science ,Operational forecasting - Published
- 2021
24. GC-MS Metabolomics to Evaluate the Composition of Plant Cuticular Waxes for Four Triticum aestivum Cultivars
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Florent D. Lavergne, Corey D. Broeckling, Darren M. Cockrell, Scott D. Haley, Frank B. Peairs, Courtney E. Jahn, and Adam L. Heuberger
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gas chromatography-mass spectrometry ,scanning electron microscopy ,cuticular wax ,epicuticular wax crystal ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Wheat (Triticum aestivum L.) is an important food crop, and biotic and abiotic stresses significantly impact grain yield. Wheat leaf and stem surface waxes are associated with traits of biological importance, including stress resistance. Past studies have characterized the composition of wheat cuticular waxes, however protocols can be relatively low-throughput and narrow in the range of metabolites detected. Here, gas chromatography-mass spectrometry (GC-MS) metabolomics methods were utilized to provide a comprehensive characterization of the chemical composition of cuticular waxes in wheat leaves and stems. Further, waxes from four wheat cultivars were assayed to evaluate the potential for GC-MS metabolomics to describe wax composition attributed to differences in wheat genotype. A total of 263 putative compounds were detected and included 58 wax compounds that can be classified (e.g., alkanes and fatty acids). Many of the detected wax metabolites have known associations to important biological functions. Principal component analysis and ANOVA were used to evaluate metabolite distribution, which was attributed to both tissue type (leaf, stem) and cultivar differences. Leaves contained more primary alcohols than stems such as 6-methylheptacosan-1-ol and octacosan-1-ol. The metabolite data were validated using scanning electron microscopy of epicuticular wax crystals which detected wax tubules and platelets. Conan was the only cultivar to display alcohol-associated platelet-shaped crystals on its abaxial leaf surface. Taken together, application of GC-MS metabolomics enabled the characterization of cuticular wax content in wheat tissues and provided relative quantitative comparisons among sample types, thus contributing to the understanding of wax composition associated with important phenotypic traits in a major crop.
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- 2018
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25. Niche-Specificity and the Variable Fraction of the Pectobacterium Pan-Genome
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J. D. Glasner, M. Marquez-Villavicencio, H.-S. Kim, C. E. Jahn, B. Ma, B. S. Biehl, A. I. Rissman, B. Mole, X. Yi, C.-H. Yang, J. L. Dangl, S. R. Grant, N. T. Perna, and A. O. Charkowski
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Erwinia ,host range ,soft rot ,Microbiology ,QR1-502 ,Botany ,QK1-989 - Abstract
We compare genome sequences of three closely related soft-rot pathogens that vary in host range and geographical distribution to identify genetic differences that could account for lifestyle differences. The isolates compared, Pectobacterium atrosepticum SCRI1043, P. carotovorum WPP14, and P. brasiliensis 1692, represent diverse lineages of the genus. P. carotovorum and P. brasiliensis genome contigs, generated by 454 pyrosequencing ordered by reference to the previously published complete circular chromosome of P. atrosepticum genome and each other, account for 96% of the predicted genome size. Orthologous proteins encoded by P. carotovorum and P. brasiliensis are approximately 95% identical to each other and 92% identical to P. atrosepticum. Multiple alignment using Mauve identified a core genome of 3.9 Mb conserved among these Pectobacterium spp. Each core genome is interrupted at many points by species-specific insertions or deletions (indels) that account for approximately 0.9 to 1.1 Mb. We demonstrate that the presence of a hrpK-like type III secretion system-dependent effector protein in P. carotovorum and P. brasiliensis and its absence from P. atrosepticum is insufficient to explain variability in their response to infection in a plant. Additional genes that vary among these species include those encoding peptide toxin production, enzyme production, secretion proteins, and antibiotic production, as well as differences in more general aspects of gene regulation and metabolism that may be relevant to pathogenicity.
- Published
- 2008
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26. The Flagellar Sigma Factor FliA Is Required for Dickeya dadantii Virulence
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Courtney E. Jahn, David K. Willis, and Amy O. Charkowski
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Microbiology ,QR1-502 ,Botany ,QK1-989 - Abstract
The genome sequence of the Enterobacteriaceae phytopathogen Dickeya dadantii (formerly Erwinia chrysanthemi) revealed homologs of genes required for a complete flagellar secretion system and one flagellin gene. We found that D. dadantii was able to swim and swarm but that ability to swarm was dependent upon both growth media and temperature. Mutation of the D. dadantii fliA gene was pleiotropic, with the alternate sigma factor required for flagella production and development of disease symptoms but not bacterial growth in Nicotiana benthamiana leaves. The flagellar sigma factor was also required for multiple bacterial phenotypes, including biofilm formation in culture, bacterial adherence to plant tissue, and full expression of pectate lyase activity (but not cellulase or protease activity). Surprisingly, mutation of fliA resulted in the increased expression of avrL (a gene of unknown function in D. dadantii) and two pectate lyase gene homologs, pelX and ABF-0019391. Because FliA is a key contributor to virulence in D. dadantii, it is a new target for disease control.
- Published
- 2008
- Full Text
- View/download PDF
27. Morphology of migration: associations between wing shape, bill morphology and migration in kingbirds (Tyrannus)
- Author
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Nicholas A. Mason, Maggie MacPherson, Alex E. Jahn, Tulane Univ, Louisiana State Univ, Universidade Estadual Paulista (UNESP), and Indiana Univ
- Subjects
ecomorphology ,partial migration ,Wing ,Phylogenetic tree ,Zoology ,Morphology (biology) ,natural selection ,Biology ,Generalist and specialist species ,migration ,Intraspecific competition ,Taxon ,Energy expenditure ,Animal migration ,flycatcher ,movement ecology ,Ecology, Evolution, Behavior and Systematics ,Tyrannidae - Abstract
Made available in DSpace on 2022-04-28T17:21:05Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-10-21 Indiana University's Prepared for Environmental Change Grand Challenge Initiative Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) James S. McDonnell Foundation Morphology is closely linked to locomotion and diet in animals. In animals that undertake long-distance migrations, limb morphology is under selection to maximize mobility and minimize energy expenditure. Migratory behaviours also interact with diet, such that migratory animals tend to be dietary generalists, whereas sedentary taxa tend to be dietary specialists. Despite a hypothesized link between migration status and morphology, phylogenetic comparative studies have yielded conflicting findings. We tested for evolutionary associations between migratory status and limb and bill morphology across kingbirds, a pan-American genus of birds with migratory, partially migratory and sedentary taxa. Migratory kingbirds had longer wings, in agreement with expectations that selection favours improved aerodynamics for long-distance migration. We also found an association between migratory status and bill shape, such that more migratory taxa had wider, deeper and shorter bills compared to sedentary taxa. However, there was no difference in intraspecific morphological variation among migrants, partial migrants and residents, suggesting that dietary specialization has evolved independently of migration strategy. The evolutionary links between migration, diet and morphology in kingbirds uncovered here further strengthen ecomorphological associations that underlie long-distance seasonal movements in animals. Tulane Univ, Dept Ecol & Evolutionary Biol, New Orleans, LA 70118 USA Louisiana State Univ, Museum Nat Sci, Baton Rouge, LA 70803 USA Univ Estadual Paulista, Dept Biodiversidade, Av 24a 1515, Rio Claro, Brazil Indiana Univ, Environm Resilience Inst, 717 E 8th St, Bloomington, IN 47408 USA Univ Estadual Paulista, Dept Biodiversidade, Av 24a 1515, Rio Claro, Brazil FAPESP: 2012/17225-2
- Published
- 2021
28. The Role of Cellulose and O-Antigen Capsule in the Colonization of Plants by Salmonella enterica
- Author
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Jeri D. Barak, Courtney E. Jahn, Deanna L. Gibson, and Amy O. Charkowski
- Subjects
curli ,GGDEF ,lipopolysaccharide ,Microbiology ,QR1-502 ,Botany ,QK1-989 - Abstract
Numerous salmonellosis outbreaks have been associated with vegetables, in particular sprouted seed. Thin aggregative fimbriae (Tafi), a component of the extracellular matrix responsible for multicellular behavior, are important for Salmonella enterica attachment and colonization of plants. Here, we demonstrate that the other surface polymers composing the extracellular matrix, cellulose, and O-antigen capsule also play a role in colonization of plants. Mutations in bacterial cellulose synthesis (bcsA) and O-antigen capsule assembly and translocation (yihO) reduced the ability to attach to and colonize alfalfa sprouts. A colanic acid mutant was unaffected in plant attachment or colonization. Tafi, cellulose synthesis, and O-antigen capsule, all of which contribute to attachment and colonization of plants, are regulated by AgfD, suggesting that AgfD is a key regulator for survival outside of hosts of Salmonella spp. The cellulose biosynthesis regulator adrA mutant was not affected in the ability to attach to or colonize plants; however, promoter probe assays revealed expression by cells attached to alfalfa sprouts. Furthermore, quantitative reverse-transcriptase polymerase chain reaction revealed differential expression of agfD and adrA between planktonic and plant-attached cells. In addition, there was no correlation among mutants between biofilm formation in culture and attachment to plants. Outside of animal hosts, S. enterica appears to rely on an arsenal of adhesins to persist on plants, which can act as vectors and perpetuate public health concerns.
- Published
- 2007
- Full Text
- View/download PDF
29. Variable Seasonal Movement Dynamics among Individual Snail Kites (Rostrhamus sociabilis) in South America
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Leandro Bugoni, Peter P. Marra, Evan R. Buechley, Alex E. Jahn, Joaquín Cereghetti, Márcio Repenning, and Thomas B. Ryder
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Facultative ,Geography ,Satellite transmitter ,Amazon rainforest ,Ecology ,Movement (music) ,Range (biology) ,Behavioral ecology ,Animal Science and Zoology ,Rostrhamus ,Annual cycle - Abstract
South America is home to the highest diversity of birds on the planet, yet we still understand relatively little about their seasonal movements, or even which species are migratory. During two consecutive years, we used satellite transmitters to study the movement ecology of 10 individual Snail Kites (Rostrhamus sociabilis) captured in southern Brazil. We detected highly variable movement patterns among Snail Kites, with some migrating between two well-defined sites, migrating up to 4000 km to the mouth of the Amazon River. Others exhibited nomadic/facultative movements, moving different distances and to different sites between seasons and years. Overall, Snail Kites spent most of the migration period at stopover sites, moved at a higher speed, and used fewer stopovers in austral spring than in fall. These results provide the first evidence that Snail Kites in South America move across large distances, effectively connecting major watersheds, and suggest that individual Snail Kites are highly flexible in how they track resources over time and space. The complex movements and highly variable migratory behavior we detected among Snail Kites points to the need for more detailed research on the behavioral ecology and risks to survival across the annual cycle and broad range of this enigmatic and poorly understood species.
- Published
- 2021
30. Interactions of free-living amoebae with the rice fungal pathogen, Rhizoctonia solani
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William H. Wheat, Mary Jackson, Emily K Luna, Courtney E. Jahn, John J. Long, and Jan E. Leach
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0106 biological sciences ,0301 basic medicine ,Microorganism ,Heterotroph ,Biological pest control ,lcsh:Medicine ,Acanthamoeba ,macromolecular substances ,Biology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Dictyostelium discoideum ,Rhizoctonia ,Microbiology ,Rhizoctonia solani ,Crop ,03 medical and health sciences ,Sheath blight ,Cell Wall ,Antibiosis ,Free-living amoebae ,Dictyostelium ,Pest Control, Biological ,lcsh:Science (General) ,Pathogen ,lcsh:QH301-705.5 ,Mycelium ,Plant Diseases ,Hartmannella ,fungi ,lcsh:R ,food and beverages ,Oryza ,General Medicine ,biology.organism_classification ,bacterial infections and mycoses ,equipment and supplies ,Coculture Techniques ,Research Note ,030104 developmental biology ,Biological Control Agents ,lcsh:Biology (General) ,Vermamoeba ,010606 plant biology & botany ,lcsh:Q1-390 - Abstract
Objective Rhizoctonia solani is a soil-borne fungal pathogen of many important crop plants. In rice, R. solani causes sheath blight disease, which results in devastating grain yield and quality losses. Few methods are available to control this pathogen and classic single gene resistance mechanisms in rice plants have not been identified. We hypothesize that alternate means of control are available in the environment including free-living amoebae. Amoebae are soil-, water- and air-borne microorganisms that are predominantly heterotrophic. Many amoeba species are mycophagous, and several harm their prey using mechanisms other than phagocytosis. Here, we used light and scanning electron microscopy to survey the interactions of R. solani with four amoeba species, with the goal of identifying amoebae species with potential for biocontrol. Results We observed a wide range of responses during interactions of R. solani with four different free-living amoebae. Two Acanthamoeba species encyst in co-cultures with R. solani at higher rates than medium without R. solani. Vermamoeba vermiformis (formerly Hartmanella vermiformis) attach to R. solani mycelium and are associated with mycelial shriveling and perforations of fungal cell walls, indicating an antagonistic interaction. No phenotypic changes were observed in co-cultures of Dictyostelium discoideum and R. solani.
- Published
- 2019
31. Effects of Eccentric Preloading on Concentric Vertical Jump Performance in Youth Athletes
- Author
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Zachary M. Gillen, Lacey E. Jahn, Nicholas A. Bohannon, Brianna D. McKay, Marni E. Shoemaker, Joel T. Cramer, and Alegra I. Mendez
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Male ,Adolescent ,Biophysics ,Athletic Performance ,Impulse (physics) ,Concentric ,Stretch shortening cycle ,03 medical and health sciences ,Vertical jump ,0302 clinical medicine ,Humans ,Eccentric ,Orthopedics and Sports Medicine ,Muscle Strength ,Child ,Muscle, Skeletal ,Mathematics ,Orthodontics ,biology ,Athletes ,Rehabilitation ,030229 sport sciences ,biology.organism_classification ,Cross-Sectional Studies ,Thigh ,Drop jump ,Exercise Test ,Jump ,030217 neurology & neurosurgery - Abstract
This study measured peak force (PF), peak rate of force development (PRFD), peak power (PP), concentric impulse, and eccentric impulse during static jump (SJ), countermovement jump (CMJ), and drop jump (DJ) in youth athletes to examine changes in vertical jump power with progressively greater eccentric preloading in relation to age, maturity, and muscle mass. Twenty-one males ranging from 6 to 16 years old performed the following vertical jumps in a random order: SJ, CMJ, and DJ from drop heights of 20, 30, and 40 cm (DJ20, DJ30, and DJ40, respectively). Measurements included PF, PRFD, PP, eccentric impulse, and concentric impulse for each vertical jump condition. Maturity offset was calculated, while ultrasound images quantified thigh muscle cross-sectional area (CSA). PF and PRFD increased from CMJ to DJ20. PP increased from SJ to CMJ. Concentric impulse remained unchanged, but eccentric impulse increased systematically from across jumps. The change in PP from SJ to CMJ was correlated with age, height, weight, maturity offset, and CSA. The CMJ resulted in the greatest concentric PP with the least amount of eccentric preloading. The inability of young athletes to translate the energy absorbed during the eccentric phase of the stretch-shortening cycle of DJs may be influenced by growth and development.
- Published
- 2019
32. Evidence of breeding activity of subadult Turdus thrushes in Argentina
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Patricia Capllonch, Fernando Diego Ortiz, Exequiel Barboza, and Alex E. Jahn
- Subjects
0106 biological sciences ,education.field_of_study ,biology ,010604 marine biology & hydrobiology ,Population ,Zoology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Brood ,Breed ,Life history theory ,Psychiatry and Mental health ,Brood patch ,education ,Thrush - Abstract
Little is known about the age at which many Neotropical bird species first attempt to breed. We evaluated the breeding condition of 515 adult and subadult males and females among four species of Turdus thrushes (T. nigriceps, T. chiguanco, T. amaurochalinus and T. rufiventris) in Tucumán, Argentina during three breeding seasons (2015 to 2018). We registered a total of 126 individuals with brood patches and cloacal protuberances, which accounted for 24.5% of thrushes in breeding condition that we sampled. Forty thrushes had a brood patch (31.7% of those in breeding condition), of which 11 were subadults (8.7%). Eighty-six thrushes (68.3%) had a swollen cloacal protuberance, 18 of which were subadults (14.3%). Only a few of the subadults in breeding condition built nests, incubated eggs or raised nestlings. Of 130 nests we found, only 3 belonged to a subadult thrush (in all cases, a subadult female with an adult social mate), one of which was successful. Further research on these patterns among various Neotropical bird species could lead to important insights into the life history strategies that characterize different populations, and how these ultimately affect their population dynamics.
- Published
- 2019
33. Potential for Beneficial Reuse of Oil and Gas–Derived Produced Water in Agriculture: Physiological and Morphological Responses in Spring Wheat (Triticum aestivum)
- Author
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Erin M. Sedlacko, Christopher P. Higgins, Hannah Miller, Nathan M. Sindt, Andrea C. Blaine, Adam L. Heuberger, Tzahi Y. Cath, Courtney E. Jahn, and Thomas Borch
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Salinity ,Irrigation ,Agricultural Irrigation ,010504 meteorology & atmospheric sciences ,Health, Toxicology and Mutagenesis ,Oil and Gas Industry ,Sodium Chloride ,Wastewater ,010501 environmental sciences ,Photosynthetic efficiency ,01 natural sciences ,Water Purification ,Tap water ,Environmental Chemistry ,Photosynthesis ,Triticum ,0105 earth and related environmental sciences ,Crop yield ,food and beverages ,Total dissolved solids ,Produced water ,Agronomy ,Environmental science ,Seasons ,Water quality ,Water Pollutants, Chemical - Abstract
Produced water (PW) from oil and gas operations is considered a potential resource for food crop irrigation because of increasing water scarcity in dryland agriculture. However, efforts to employ PW for agriculture have been met with limited success. A greenhouse study was performed to evaluate the effects of PW on physiological and morphological traits of spring wheat (Triticum aestivum). Plants were irrigated with water treatments containing 10 and 50% PW (PW10 and PW50, respectively) and compared to a matching 50% salinity (NaCl50) and 100% tap water controls. Compared to controls, plants watered with PW10 and PW50 exhibited developmental arrest and reductions in aboveground and belowground biomass, photosynthetic efficiency, and reproductive growth. Decreases in grain yield ranged from 70 to 100% in plants irrigated with PW compared to the tap water control. Importantly, the PW10 and NaCl50 treatments were comparable for morphophysiological effects, even though NaCl50 contained 5 times the total dissolved solids, suggesting that constituents other than NaCl in PW contributed to plant stress. These findings indicate that despite discharge and reuse requirements focused on total dissolved solids, salinity stress may not be the primary factor affecting crop health. The results of the present study are informative for developing guidelines for the use of PW in agriculture to ensure minimal effects on crop morphology and physiology. Environ Toxicol Chem 2019;38:1756-1769. © 2019 SETAC.
- Published
- 2019
34. Breeding latitude predicts timing but not rate of spring migration in a widespread migratory bird in South America
- Author
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José Hernán Sarasola, Douglas J. Levey, Alex E. Jahn, Joaquín Cereghetti, Diego T. Tuero, Miguel Ângelo Marini, Víctor R. Cueto, Marco Aurélio Pizo, Diego A. Masson, Michael T. Hallworth, Universidade Estadual Paulista (Unesp), Univ Nacl La Pampa, Consejo Nacl Invest Cient & Tecn, Univ Nacl Patagonia San Juan Bosco, Smithsonian Conservat Biol Inst, Natl Sci Fdn, Universidade de Brasília (UnB), Univ Nacl La Plata, Univ Nacl La Pampa UNLPam, and UBA
- Subjects
0106 biological sciences ,life history ,Tyrannus savana ,NEOTROPIC ,MIGRATION ,Fork-tailed flycatcher ,Argentina ,Pampas ,010603 evolutionary biology ,01 natural sciences ,Latitude ,purl.org/becyt/ford/1 [https] ,Ciencias Biológicas ,03 medical and health sciences ,cerrado ,light-level geolocator ,lcsh:QH540-549.5 ,Spring (hydrology) ,Temperate climate ,Zoología ,Light‐level geolocator ,Life history ,purl.org/becyt/ford/1.6 [https] ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Nature and Landscape Conservation ,Original Research ,0303 health sciences ,geography.geographical_feature_category ,AVE ,Ecology ,biology ,Cerrado ,Zoología, Ornitología, Entomología, Etología ,15. Life on land ,biology.organism_classification ,Breed ,light‐level geolocator ,Geography ,Positive relationship ,lcsh:Ecology ,CIENCIAS NATURALES Y EXACTAS ,Brazil - Abstract
1. Identifying the processes that determine avian migratory strategies in different environmental contexts is imperative to understanding the constraints to survival and reproduction faced by migratory birds across the planet. 2. We compared the spring migration strategies of Fork‐tailed Flycatchers (Tyrannus s. savana) that breed at south‐temperate latitudes (i.e., austral migrants) vs. tropi‐ cal latitudes (i.e., intratropical migrants) in South America. We hypothesized that austral migrant flycatchers are more time‐selected than intratropical migrants during spring migration. As such, we predicted that austral migrants, which mi‐ grate further than intratropical migrants, will migrate at a faster rate and that the rate of migration for austral migrants will be positively correlated with the onset of spring migration. 3. We attached light‐level geolocators to Fork‐tailed Flycatchers at two tropical breeding sites in Brazil and at two south‐temperate breeding sites in Argentina and tracked their movements until the following breeding season. 4. Of 286 geolocators that were deployed, 37 were recovered ~1 year later, of which 28 provided useable data. Rate of spring migration did not differ significantly between the two groups, and only at one site was there a significantly positive relationship between date of initiation of spring migration and arrival date. 5. This represents the first comparison of individual migratory strategies among con‐ specific passerines breeding at tropical vs. temperate latitudes and suggests that austral migrant Fork‐tailed Flycatchers in South America are not more time‐se‐ lected on spring migration than intratropical migrant conspecifics. Low sample sizes could have diminished our power to detect differences (e.g., between sexes), such that further research into the mechanisms underpinning migratory strategies in this poorly understood system is necessary., Facultad de Ciencias Naturales y Museo
- Published
- 2019
35. High-throughput quantitative analysis of phytohormones in sorghum leaf and root tissue by ultra-performance liquid chromatography-mass spectrometry
- Author
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Daniel P. Schachtman, Lisa M. Wolfe, Corey D. Broeckling, Jay S. Kirkwood, Jessica E. Prenni, Amy M. Sheflin, and Courtney E. Jahn
- Subjects
02 engineering and technology ,Biology ,Plant Roots ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Transcriptome ,chemistry.chemical_compound ,Plant Growth Regulators ,Tandem Mass Spectrometry ,Auxin ,Liquid chromatography–mass spectrometry ,Metabolome ,Solid phase extraction ,Abscisic acid ,Chromatography, High Pressure Liquid ,Sorghum ,chemistry.chemical_classification ,fungi ,010401 analytical chemistry ,food and beverages ,021001 nanoscience & nanotechnology ,biology.organism_classification ,High-Throughput Screening Assays ,0104 chemical sciences ,Plant Leaves ,chemistry ,Gibberellin ,0210 nano-technology - Abstract
Plant development, growth, and adaptation to stress are regulated by phytohormones, which can influence physiology even at low concentrations. Phytohormones are chemically grouped according to both structure and function as auxins, cytokinins, abscisic acid, jasmonates, salicylates, gibberellins, and brassinosteroids, among others. This chemical diversity and requirement for highly sensitive detection in complex matrices create unique challenges for comprehensive phytohormone analysis. Here, we present a robust and efficient quantitative UPLC-MS/MS assay for 17 phytohormones, including jasmonates, salicylates, abscisic acid, gibberellins, cytokinins, and auxins. Using this assay, 12 phytohormones were detected and quantified in sorghum plant tissue without the need for solid phase extraction (SPE) or liquid-liquid extraction. Variation of phytohormone profiles was explored in both root and leaf tissues between three genotypes, harvested at two different developmental time points. The results highlight the importance of tissue type, sampling time, and genetic factors when designing experiments that involve phytohormone analysis of sorghum. This research lays the groundwork for future studies, which can combine phytohormone profiling with other datasets such as transcriptome, soil microbiome, genome, and metabolome data, to provide important functional information about adaptation to stress and other environmental variables.
- Published
- 2019
36. Plant, bird, and mammal diversity of the Tomogrande field station, Vichada, Colombia
- Author
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Sergio Estrada Villegas, Luz Dary Rivas, John Fredy Barrera, Diego F. Correa, Laura Sofía Argüello Bernal, Ana María Aldana, Luisa Fernanda Casas, Alejandro Lozano-Balcázar, Valentina Gómez-Bahamón, Camila Gómez, Nicholas Bayly, Alex E. Jahn, Antonio Quiñones, Eamon C. Corbett, Francisco Castro, Pablo Stevenson, and Steven Barrera Rivas
- Subjects
Ecology ,Animal Science and Zoology ,Plant Science ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
The Altillanura is a unique ecosystem within the Colombian Llanos, characterized by well-drained savannas and extensive riparian forests. The Altillanura harbors a rich assemblage of species, largely understudied and currently under threat by large-scale and unplanned agribusiness. Moreover, the number of public protected areas in the Colombian Llanos, particularly in the Altillanura, is insufficient to conserve the threatened habitats and species. Therefore, conservation efforts by private reserves are crucial for the protection of the region’s biodiversity. Here we present the first species list of the Tomogrande, a private nature reserve and scientific research field station in the municipality of Santa Rosalía, Vichada, Colombia. After ten years of ongoing research, we have recorded 299 species of plants, 189 species of birds, and 47 species of mammals. Compared to other private nature reserves in Vichada and the Tuparro National Park, the largest protected area in the region, Tomogrande makes a substantial contribution to the conservation of all three taxonomic groups. We advocate that better landscape planning and sustainable practices should become mandatory in the Altillanura to protect its biodiversity and the livelihoods of all stakeholders that inhabit this region.
- Published
- 2022
37. Morphology of migration: Associations between wing, and bill morphology and migration in kingbirds (Tyrannus)
- Author
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Maggie MacPherson, Nicholas A. Mason, and Alex E. Jahn
- Subjects
Taxon ,Wing ,Energy expenditure ,Phylogenetic tree ,Animal migration ,Zoology ,Morphology (biology) ,Biology ,Generalist and specialist species ,Intraspecific competition - Abstract
Morphology is closely linked to locomotion and diet in animals. In animals that undertake long-distance migrations, limb-morphology is under selection to maximize mobility and minimize energy expenditure. Migratory behaviors also interact with diet, such that migratory animals tend to be dietary generalists, while sedentary taxa tend to be dietary specialists. Despite a hypothesized link between migration status and morphology, phylogenetic comparative studies have yielded conflicting findings. We tested for evolutionary associations between migratory status and limb and bill morphology across kingbirds, a pan-American genus of birds with migratory, partially migratory, and sedentary taxa. Migratory kingbirds had longer wings, in agreement with expectations if selection favors improved aerodynamics for long-distance migration. We also found an association between migratory status and bill shape, such that more migratory taxa had wider, deeper, and shorter bills compared to sedentary taxa. However, there was no difference in intraspecific morphological variation among migrants, partial migrants, and residents, suggesting that dietary specialization has evolved independently of migration strategy. The evolutionary links between migration, diet, and morphology in kingbirds uncovered here further strengthen ecomorphological associations that underlie long-distance seasonal movements in animals.
- Published
- 2021
38. The contribution of citizen science to research on migratory and urban birds in Brazil
- Author
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Pedro Ferreira Develey, Milton Cesar Ribeiro, Karlla Vanessa de Camargo Barbosa, Alex E. Jahn, Universidade Estadual Paulista (Unesp), BirdLife International/SAVE Brasil- Sociedade para Conservação das Aves do Brasil, and Indiana University
- Subjects
Occupancy ,Tyrannus ,Ecology (disciplines) ,Biodiversity ,Pyrocephalus ,Variety (cybernetics) ,Birdwatching ,Urban ecology ,Habitat ,Empidonomus ,Citizen science ,Animal Science and Zoology ,Myiodynastes ,Environmental planning ,Tyrannidae - Abstract
Made available in DSpace on 2021-06-25T10:23:08Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-03-01 Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) For ages, the wide variety of colors, shapes, and behaviors of birds have attracted the attention of nature observers and professional ornithologists. Birdwatching represents an important source of data on many aspects of bird biology worldwide, particularly in Brazil, a highly biodiverse country. We reviewed the current state of citizen science with regard to Brazilian birdwatching by evaluating (a) where, (b) how much, and (c) what kind of data are collected by birdwatchers. To highlight the potential contribution of such data, we used citizen science data to evaluate the migration timing and habitat occupancy of four migratory bird species whose movements are still understudied. In addition, based on our assessment, we suggest new avenues for citizen science-based research on migratory bird ecology in Brazil. Finally, given that the urban ecology of numerous Brazilian birds is still poorly understood, we highlight how this can be remediated through the efforts of birdwatchers, given that 73% of the data is concentrated within or nearby large urban centers in southern and southeastern Brazil. We show that data generated by citizen scientists can be useful for a suite of studies, such as on habitat use and migration patterns of Brazilian birds. Therefore, citizen science is an important way to improve our knowledge about Brazilian birds and promote their conservation in an era of rapid change. Nevertheless, its impact in the long term will depend on improving the quality of the data and involvement of more birdwatchers. Graphical abstract: [Figure not available: see fulltext.] Departamento de Biodiversidade Laboratório de Ecologia Espacial e Conservação (LEEC) Instituto de Biociências Universidade Estadual Paulista (UNESP) BirdLife International/SAVE Brasil- Sociedade para Conservação das Aves do Brasil Environmental Resilience Institute Indiana University Departamento de Biodiversidade Laboratório de Ecologia Espacial e Conservação (LEEC) Instituto de Biociências Universidade Estadual Paulista (UNESP) CAPES: 001
- Published
- 2021
39. Future climate change will impact the size and location of breeding and wintering areas of migratory thrushes in South America
- Author
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Marco Aurélio Pizo, Natalia Stefanini Da Silveira, Alex E. Jahn, Maurício Humberto Vancine, Thadeu Sobral-Souza, Universidade Estadual Paulista (UNESP), Indiana University, and Federal University of Mato Grosso (UFMT)
- Subjects
0106 biological sciences ,Ecological niche ,Ecology ,010604 marine biology & hydrobiology ,Species distribution ,Bird migration ,Climate change ,Future climate ,Ecological niche models ,South America ,010603 evolutionary biology ,01 natural sciences ,Breed ,Latitude ,Geography ,Animal Science and Zoology ,sense organs ,Longitude ,Turdidae ,Ecology, Evolution, Behavior and Systematics ,Migration - Abstract
Bird migration patterns are changing worldwide due to current global climate changes. Addressing the effects of such changes on the migration of birds in South America is particularly challenging because the details about how birds migrate within the Neotropics are generally not well understood. Here, we aim to infer the potential effects of future climate change on breeding and wintering areas of birds that migrate within South America by estimating the size and elevations of their future breeding and wintering areas. We used occurrence data from species distribution databases (VertNet and GBIF), published studies, and eBird for 3 thrush species (Turdidae; Turdus nigriceps, T. subalaris, and T. flavipes) that breed and winter in different regions of South America and built ecological niche models using ensemble forecasting approaches to infer current and future potential distributions throughout the breeding and wintering periods of each species. Our findings point to future shifts in wintering and breeding areas, mainly through elevational and longitudinal changes. Future breeding areas for T. nigriceps, which migrates along the Andes Mountains, will be displaced to the west, while breeding displacements to the east are expected for the other 2 species. An overall loss in the size of future wintering areas was also supported for 2 of the species, especially for T. subalaris, but an increase is anticipated for T. flavipes. Our results suggest that future climate change in South America will require that species shift their breeding and wintering areas to higher elevations in addition to changes in their latitudes and longitude. Our findings are the first to show how future climate change may affect migratory birds in South America throughout the year and suggest that even closely related migratory birds in South America will be affected in different ways, depending on the regions where they breed and overwinter.LAY SUMMARYBird ranges are changing worldwide due to current global climate changes.Bird migration is common in South America, with more than 200 species of Neotropical austral migrants, yet we still understand little about how these species are impacted by climate change.We modeled future breeding and winter distributions of 3 species of migratory thrushes in South America.Our results suggest that future wintering and breeding areas for migratory birds in South America will decrease, change in latitude and longitude, and shift to higher regions although patterns will likely vary by species.
- Published
- 2021
40. Drought-Induced Root Pressure in Sorghum bicolor
- Author
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Jorge Ibarra Caballero, Sean M. Gleason, Courtney E. Jahn, Joshua Wenz, Ryan W. Barton, Nora Flynn, Sarah Tepler Drobnitch, Julie Bushey, Taylor Person, and Louise H. Comas
- Subjects
fungi ,Greenhouse ,Sorghum bicolor ,Xylem ,Aquaporin ,food and beverages ,Plant Science ,Biology ,lcsh:Plant culture ,Adaptive functioning ,Shoot biomass ,aquaporin ,root pressure ,Horticulture ,Root length ,Root pressure ,transporter ,lcsh:SB1-1110 ,RNA-Seq ,water relations ,Original Research ,xylem transport ,agriculture - Abstract
Root pressure, also manifested as profusive sap flowing from cut stems, is a phenomenon in some species that has perplexed biologists for much of the last century. It is associated with increased crop production under drought, but its function and regulation remain largely unknown. In this study, we investigated the initiation, mechanisms, and possible adaptive function of root pressure in six genotypes of Sorghum bicolor during a drought experiment in the greenhouse. We observed that root pressure was induced in plants exposed to drought followed by re-watering but possibly inhibited by 100% re-watering in some genotypes. We found that root pressure in drought stressed and re-watered plants was associated with greater ratio of fine: coarse root length and shoot biomass production, indicating a possible role of root allocation in creating root pressure and adaptive benefit of root pressure for shoot biomass production. Using RNA-Seq, we identified gene transcripts that were up- and down-regulated in plants with root pressure expression, focusing on genes for aquaporins, membrane transporters, and ATPases that could regulate inter- and intra-cellular transport of water and ions to generate positive xylem pressure in root tissue.
- Published
- 2021
41. Biomass for thermochemical conversion: targets and challenges
- Author
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Paul eTanger, John L. Field, Courtney E. Jahn, Morgan W. DeFoort, and Jan E. Leach
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silica ,Proximate/ultimate ,Cellulosic bioenergy ,Biomass composition ,Thermochemical conversion ,High throughput phenotyping ,Plant culture ,SB1-1110 - Abstract
Bioenergy will be one component of a suite of alternatives to fossil fuels. Effective conversion of biomass to energy will require the careful pairing of advanced conversion technologies with biomass feedstocks optimized for the purpose. Lignocellulosic biomass can be converted to useful energy products via two distinct pathways: enzymatic or thermochemical conversion. The thermochemical pathways are reviewed and potential biotechnology or breeding targets to improve feedstocks for pyrolysis, gasification, and combustion are identified. Biomass traits influencing the effectiveness of the thermochemical process (cell wall composition, mineral and moisture content) differ from those important for enzymatic conversion and so properties are discussed in the language of biologists (biochemical analysis) as well as that of engineers (proximate and ultimate analysis). We discuss the genetic control, potential environmental influence, and consequences of modification of these traits. Improving feedstocks for thermochemical conversion can be accomplished by the optimization of lignin levels, and the reduction of ash and moisture content. We suggest that ultimate analysis and associated properties such as H:C, O:C, and heating value might be more amenable than traditional biochemical analysis to the high-throughput necessary for the phenotyping of large plant populations. Expanding our knowledge of these biomass traits will play a critical role in the utilization of biomass for energy production globally, and add to our understanding of how plants tailor their composition with their environment.
- Published
- 2013
- Full Text
- View/download PDF
42. Bird migration within the Neotropics
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Peter P. Marra, Alex E. Jahn, Carla Suertegaray Fontana, Douglas J. Levey, Víctor R. Cueto, André de Camargo Guaraldo, and Thomas B. Ryder
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0106 biological sciences ,Amazon rainforest ,Ecology ,Ecology (disciplines) ,Bird migration ,Tropics ,010603 evolutionary biology ,01 natural sciences ,010605 ornithology ,Geography ,Citizen science ,Altitudinal migration ,Animal Science and Zoology ,Identification (biology) ,Ecosystem ,Ecology, Evolution, Behavior and Systematics - Abstract
Although the migration ecology of birds breeding in the Neotropics is still poorly studied relative to that of their counterparts breeding at north-temperate latitudes, studies conducted over the last 2 decades have revealed that migration in the Neotropics is much more common and diverse than previously thought. These studies have identified dozens of species that migrate latitudinally within South America, altitudinally within various mountain ranges, to and between Caribbean islands, and longitudinally across diverse ecosystems such as the Amazon rainforest. Advances in miniaturized tracking technologies, enormous citizen science databases, and powerful analytical approaches provide an unprecedented ability to detect and evaluate temporally and spatially fine-scale patterns, greatly facilitating the study of migratory patterns across tropical regions. We argue that a renewed effort in research on short- and long-distance bird migration within the Neotropics will allow (1) comparative studies that identify the emergent properties of migratory behavior, (2) identification of the convergent or unique mechanistic drivers of migration across diverse ecological settings, (3) formulation of effective conservation and management plans for migratory Neotropical birds, and (4) predictions about how migratory birds will respond to large-scale climatic changes within the Neotropics. Here, we review the current state of knowledge on Neotropical bird migration, with a focus on South America. We specifically examine similarities and differences in the observed migratory patterns of birds that breed in the Nearctic compared to the Neotropics and highlight key future research questions.
- Published
- 2020
43. Bare-throated Bellbird (Procnias nudicollis)
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Alex. E. Jahn, Maurício Bettio, Joaquín Cereghetti, Carla Suertegaray Fontana, Márcio Repenning, and Thomas Brandt Ryder
- Published
- 2020
44. Fork-tailed Flycatcher (Tyrannus savana)
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Alex. E. Jahn and D. T. Tuero
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- 2020
45. Tropical Kingbird (Tyrannus melancholicus)
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Philip C. Stouffer, R. Terry Chesser, and Alex. E. Jahn
- Published
- 2020
46. Differential Stem Proteomics and Metabolomics Profiles for Four Wheat Cultivars in Response to the Insect Pest Wheat Stem Sawfly
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Adam L. Heuberger, Darren M. Cockrell, Florent D. Lavergne, Frank B. Peairs, Kitty J. Brown, Courtney E. Jahn, Lisa M. Wolfe, Stephen Pearce, Corey D. Broeckling, and Scott D. Haley
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0301 basic medicine ,Proteomics ,030102 biochemistry & molecular biology ,biology ,fungi ,food and beverages ,General Chemistry ,biology.organism_classification ,Biochemistry ,Hymenoptera ,Crop ,03 medical and health sciences ,Sawfly ,Plant Breeding ,030104 developmental biology ,Metabolomics ,Botany ,Proteome ,Metabolome ,Animals ,PEST analysis ,Cultivar ,Common wheat - Abstract
Common wheat (Triticum aestivum L.) is a global staple crop, and insect pests can impact grain yield. The wheat stem sawfly (Cephus cinctus, WSS) is a major wheat pest, and while partial resistance has been deployed by breeding for a solid-stem trait, this trait is affected by environment. Here, a proteomics and metabolomics study was performed on four wheat cultivars to characterize a molecular response to WSS infestation. The cultivars Hatcher (hollow-stem partially tolerant), Conan (semisolid-stem-resistant), and Denali and Reeder (hollow-stem-susceptible) were infested with WSS, and changes in stem proteins and metabolites were characterized using liquid chromatography–mass spectrometry. The proteome was characterized as 1830 proteins that included five major biological processes, including metabolic processes and response to stimuli, and the metabolome (1823 metabolites) spanned eight chemical superclasses, including alkaloids, benzenoids, and lipids. All four varieties had a molecular response to WS...
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- 2020
47. Follow the rain? Environmental drivers ofTyrannusmigration across the New World
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Diego T. Tuero, Elliot D. Hill, Michael T. Murphy, Maggie MacPherson, Daniel H. Kim, Alex E. Jahn, Víctor R. Cueto, Tulane Univ, Universidade Estadual Paulista (Unesp), Portland State Univ, Consejo Nacl Invest Cient & Tecn, Univ Nacl Patagonia San Juan Bosco, Univ Buenos Aires, and Univ Missouri
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0106 biological sciences ,010504 meteorology & atmospheric sciences ,MIGRATION ,Species distribution ,SPECIES DISTRIBUTION MODEL ,010603 evolutionary biology ,01 natural sciences ,Ciencias Biológicas ,medicine ,Sensory cue ,Ecology, Evolution, Behavior and Systematics ,Global environmental analysis ,0105 earth and related environmental sciences ,Ecology ,MAXENT ,Zoología, Ornitología, Entomología, Etología ,Seasonality ,medicine.disease ,GEOLOCATOR ,Breed ,CLIMATE ,SEASONALITY ,Geography ,Period (geology) ,Animal Science and Zoology ,CIENCIAS NATURALES Y EXACTAS - Abstract
Se piensa que los cambios estacionales de los recursos controlan el momento de la migración anual de los animales; sin embargo, es poco lo que entendemos actualmente sobre cuáles son las señales ambientales o los recursos que las diferentes especies de aves migratorias siguen a lo largo del planeta. Entender cuáles son las señales ambientales o los recursos que las aves siguen en múltiples sistemas migratorios es un prerrequisito para desarrollar planes de conservación generalizados para las aves migratorias en un ambiente global cambiante. En el Nuevo Mundo, las diferencias climáticas que viven las especies de aves migratorias neártico-neotropicales (MNN; i.e., se reproducen en América del Norte y pasan el período no reproductivo en el Neotrópico) y las migratorias australes del neotrópico (MAN; i.e., se reproducen y pasan el período no reproductivo de modo completo en América del Sur) sugieren que sus estrategias migratorias pueden estar moldeadas por las mismas presiones de selección. Usamos datos recopilados a partir de individuos provistos de geo-localizadores de nivel de luz para construir modelos de distribución de especies (MDEs) y así evaluar qué factores ambientales controlan las estrategias migratorias de las especies en cada sistema. Para hacer esto, evaluamos si la temperatura, la precipitación y la productividad primaria (NDVI) estuvieron relacionadas con las distribuciones estacionales de las especies MNN (Tyrannus tyrannus) y MAN (T. savana). Las ubicaciones de ambas especies estuvieron positivamente correlacionadas con una alta precipitación durante sus estaciones no reproductivas. Las ubicaciones de T. tyrannus estuvieron positivamente correlacionadas con la NDVI y la temperatura durante la estación reproductiva y con las migraciones pre- and post-reproductivas. Las ubicaciones de T. savana estuvieron positivamente correlacionadas con la temperatura y la precipitación durante ambas migraciones, pero solo con la temperatura durante la estación reproductiva. El valor de extender las aplicaciones de los datos de geolocalización, como en los MDEs, queda en evidencia por el hallazgo de que la precipitación fue un predictor tan importante de las distribuciones no reproductivas de ambos tipos de migración, que no está claro cómo el cambio climático global afectará los ciclos húmedos-secos en los trópicos. Predictable seasonal changes in resources are thought to drive the timing of annual animal migrations; however, we currently understand little about which environmental cues or resources are tracked by different migratory bird species across the planet. Understanding which environmental cues or resources birds track in multiple migratory systems is a prerequisite to developing generalizable conservation plans for migratory birds in a changing global environment. Within the New World, climatic differences experienced by Nearctic-Neotropical migratory (NNM; i.e. breed in North America and spend the nonbreeding period in the Neotropics) and Neotropical austral migratory (NAM; i.e. breed and spend the nonbreeding period wholly within South America) bird species suggest that their migratory strategies may be shaped by unique selective pressures. We used data gathered from individuals fitted with light-level geolocators to build species distribution models (SDMs) to test which environmental factors drive the migratory strategies of species in each system. To do so, we evaluated whether temperature, precipitation, and primary productivity (NDVI) were related to the seasonal distributions of an NNM (Eastern Kingbird [Tyrannus tyrannus]) and NAM species (Fork-tailed Flycatcher [T. savana]). Both Eastern Kingbird and Fork-tailed Flycatcher locations were positively correlated with high precipitation during their nonbreeding seasons. Eastern Kingbird locations were positively correlated with both NDVI and temperature during their breeding season and both pre- and post-breeding migrations. Fork-tailed Flycatcher locations were positively correlated with both temperature and precipitation during both migrations, but only temperature during the breeding season. The value of extending the application of geolocator data, such as in SDMs, is underscored by the finding that precipitation was such an important predictor of the nonbreeding distributions of both types of migrants, as it remains unclear how global climate change will affect wet-dry cycles in the tropics. Fil: MacPherson, Maggie P.. Tulane University; Estados Unidos. University of Missouri; Estados Unidos Fil: Jahn, Alex. Universidade Estadual Paulista Julio de Mesquita Filho; Brasil Fil: Murphy, Michael T.. Portland State University; Estados Unidos Fil: Kim, Daniel H.. Portland State University; Estados Unidos Fil: Cueto, Víctor. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Centro de Investigación Esquel de Montaña y Estepa Patagóica. Universidad Nacional de la Patagonia "San Juan Bosco". Facultad de Ciencias Naturales - Sede Esquel. Centro de Investigación Esquel de Montaña y Estepa Patagónica; Argentina Fil: Tuero, Diego Tomas. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina Fil: Hill, Elliot D.. Tulane University; Estados Unidos
- Published
- 2018
48. Impacts of Modifications to a Local Planetary Boundary Layer Scheme on Forecasts of the Great Plains Low-Level Jet Environment
- Author
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William A. Gallus and David E. Jahn
- Subjects
Convection ,Atmospheric Science ,Jet (fluid) ,010504 meteorology & atmospheric sciences ,Moisture ,Advection ,Planetary boundary layer ,030209 endocrinology & metabolism ,Low level jet ,01 natural sciences ,03 medical and health sciences ,Boundary layer ,0302 clinical medicine ,Climatology ,Geology ,0105 earth and related environmental sciences - Abstract
The Great Plains low-level jet (LLJ) is influential in the initiation and evolution of nocturnal convection through the northward advection of heat and moisture, as well as convergence in the region of the LLJ nose. However, accurate numerical model forecasts of LLJs remain a challenge, related to the performance of the planetary boundary layer (PBL) scheme in the stable boundary layer. Evaluated here using a series of LLJ cases from the Plains Elevated Convection at Night (PECAN) program are modifications to a commonly used local PBL scheme, Mellor–Yamada–Nakanishi–Niino (MYNN), available in the Weather Research and Forecasting (WRF) Model. WRF forecast mean absolute error (MAE) and bias are calculated relative to PECAN rawinsonde observations. The first MYNN modification invokes a new set of constants for the scheme closure equations that, in the vicinity of the LLJ, decreases forecast MAEs of wind speed, potential temperature, and specific humidity more than 19%. For comparison, the Yonsei University (YSU) scheme results in wind speed MAEs 22% lower but specific humidity MAEs 17% greater than in the original MYNN scheme. The second MYNN modification, which incorporates the effects of potential kinetic energy and uses a nonzero mixing length in stable conditions as dependent on bulk shear, reduces wind speed MAEs 66% for levels below the LLJ, but increases MAEs at higher levels. Finally, Rapid Refresh analyses, which are often used for forecast verification, are evaluated here and found to exhibit a relatively large average wind speed bias of 3 m s−1 in the region below the LLJ, but with relatively small potential temperature and specific humidity biases.
- Published
- 2018
49. Relationship between arrival timing and breeding success of intra-tropical migratory Fork-tailed Flycatchers (Tyrannus savana)
- Author
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Alex E. Jahn and Vanesa Bejarano
- Subjects
0106 biological sciences ,Tyrannus savana ,Ecology ,media_common.quotation_subject ,Fork (system call) ,Reproduction ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics ,010605 ornithology ,media_common - Published
- 2018
50. C-reactive protein and genetic variants and cognitive decline in old age: the PROSPER study.
- Author
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Simon P Mooijaart, Naveed Sattar, Stella Trompet, Eliana Polisecki, Anton J M de Craen, Ernst J Schaefer, Sabine E Jahn, Thomas van Himbergen, Paul Welsh, Ian Ford, David J Stott, Rudi G J Westendorp, and PROSPER Study Group
- Subjects
Medicine ,Science - Abstract
BACKGROUND: Plasma concentrations of C-reactive protein (CRP), a marker of chronic inflammation, have been associated with cognitive impairment in old age. However, it is unknown whether CRP is causally linked to cognitive decline. METHODS AND FINDINGS: Within the Prospective Study of Pravastatin in the Elderly at Risk (PROSPER) trial, with 5680 participants with a mean age of 75 years, we examined associations of CRP levels and its genetic determinants with cognitive performance and decline over 3.2 years mean follow-up. Higher plasma CRP concentrations were associated with poorer baseline performance on the Stroop test (P = 0.001) and Letter Digit Tests (P0.5). In the prospective analyses, higher CRP concentrations associated with increased rate of decline in the immediate PLT (P = 0.016), but not in other cognitive tests (all p>0.11). Adjustment for prevalent cardiovascular risk factors and disease did not change the baseline associations nor associations with cognitive decline during follow-up. Four haplotypes of CRP were used and, compared to the common haplotype, carrierships associated strongly with levels of CRP (all P
- Published
- 2011
- Full Text
- View/download PDF
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