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Soils derived from ultramafic parent materials (hereafter serpentine) provide habitat for unique plant communities containing species with adaptations to the low nutrient levels, high magnesium : calcium ratios, and high metal content (Ni, Zn) that characterize serpentine. Plants on serpentine have long been studied in evolution and ecology, and plants adapted to serpentine contribute disproportionately to plant diversity in many parts of the world. In 2000-2003, serpentine plant communities were sampled at 107 locations representing the full range of occurrence of serpentine in California, USA, spanning large gradients in climate. In 2009-2010, plant communities were similarly sampled at 97 locations on nonserpentine soil, near to and paired with 97 of the serpentine sampling locations. (Some serpentine locations were revisited in 2009-2010 to assess the degree of change since 2000-2003, which was minimal.) At each serpentine or nonserpentine location, a north- and a south-facing 50 × 10 m plot were sampled. This design produced 97 "sites" each consisting of four "plots" (north-south exposure, serpentine-nonserpentine soil). All plots were initially visited three or more times over two years to record plant diversity and cover, and a subset were revisited in 2014 to examine community change after a drought. The original question guiding the study was how plant diversity is shaped by the spatially patchy nature of the serpentine habitat. Subsequently, we investigated how climate drives plant diversity at multiple scales (within locations, between locations on the same and different soil types, and across entire regions) and at different levels of organization (taxonomic, functional, and phylogenetic). There are no copyright restrictions and users should cite this data paper in publications that result from use of the data.

High severity fire may promote or reduce plant understory diversity in forests. However, few empirical studies have tested long-standing theoretical predictions that productivity may help to explain observed variation in post-fire plant diversity. Support for the influence of productivity on disturbance-diversity relationships is found predominantly in experimental grasslands, while tests over large areas with natural disturbance and productivity gradients are few and have yielded inconsistent results. Here, we measured the response of post-fire understory plant diversity to natural gradients of fire severity and productivity in a large-scale observational study in California's subalpine forests. We found that plant species richness increased with increasing fire severity and that this trend was stronger at high productivity. We used plant traits to investigate whether release from competition might contribute to increasing diversity and found that short-lived and far-dispersing species benefited more from high severity fire than their long-lived and near-dispersing counterparts. For far-dispersing species only, the benefit from high severity fire was stronger in high productivity plots where unburned species richness was lowest. Our results support theoretical connections between fire severity, productivity and plant communities that are key to predicting the consequences of increasing fire severity and frequency on diversity in the coming decades.

QUESTIONS: Gradients of fire severity in dry conifer forests can be associated with variation in understory floristic composition. Recent work in dry conifer forests in California, USA, has suggested that more severely burned stands contain more thermophilic taxa (those associated with warmer and drier conditions), and that forest disturbance may therefore accelerate floristic shifts already underway due to climate change. However, it remains unknown how rapidly thermophilic taxa shifts occur following disturbance, how long such shifts are likely to persist, and how different thermophilic post‐disturbance communities are from pre‐disturbance communities. LOCATION: Colorado Front Range, USA. METHODS: We investigated these questions using a unique 15‐year vegetation plot dataset that captures pre‐ and post‐fire understory community composition across a gradient of fire severity in dry conifer forests, classifying taxa using the biogeographic affinity concept. RESULTS: Thermophilization (defined here as a decrease in the ratio of cool‐mesic taxa to warm‐xeric taxa, based on biogeographic affinity of paleobotanical lineages) was observed as early as one year post‐fire for all fire severity classes, but was stronger at sites that burned at higher severity. The ratio of cool‐mesic to warm‐xeric taxa recovered to pre‐fire levels within 10 years in stands that burned at low severity, but not in stands that burned at moderate or high severity. The process of thermophilization after high‐severity fire appears to be driven primarily by the gain of warm‐xeric taxa that were absent before the fire, but losses of cool‐mesic taxa, which did not return during the duration of the study, also played a role. CONCLUSIONS: Decreases in canopy cover appear to be a main contributor to understory thermophilization. Fine‐scale heterogeneity in post‐fire forest structure is likely an important driver of floristic diversity, creating the microclimatic variation necessary to maintain floristic refugia for species mal‐adapted to increasingly warm and dry conditions.

We update and revise the serpentine affinity database of Safford et al. (2005), which documents levels of plant taxon association with ultramafic (“serpentine”) substrates in the California flora. The revised database reflects recent taxonomic changes consistent with the second edition of the Jepson Manual (TJM2) and more recent updates to the Jepson eFlora, and includes additional species that were not previously documented as serpentine associates. We also include serpentine-associated species that have been described since the publication of TJM2 and are not yet incorporated in the eFlora. A number of taxa were removed from the Safford et al. (2005) database due to new ecological information or taxonomic changes. As before, the new database presents information on rarity, geographic distribution, taxonomy, and lifeform. Based on our new database numbers and TJM2's list of California endemic species, the percentage of California endemic full species that are +/– restricted to ultramafic substrates has risen to 14.7%. Of 255 total endemic taxa in our database (including strict and “broad” endemics), 148 (c. 60%) come from only ten plant families, concentrated mostly in one or two genera per family. The North Coast and Klamath Ranges continue to support more serpentine endemics than the rest of the State combined. The previous version of the database has been widely used in biodiversity research and conservation management, and we hope that this improved and updated version will prove as valuable.

Fieldwork has played a critical role in the development of landscape ecology, and it remains essential for addressing contemporary challenges such as understanding the landscape ecology of global change. Advances in technology have expanded the scope of fieldwork to include the deployment of drones and other sensors, and in recent years, researchers have expressed concerns that traditional fieldwork (e.g., organismal observation) may be declining. Continuing to train the next generation of researchers in field methods should be a priority for landscape ecologists. Indeed, there is great potential for combining fieldwork with modern sensor data and computational approaches to advance the field of landscape ecology.

Tardigrades live in many ecosystems, but local dispersal mechanisms and the influence of ecological gradients on tardigrade communities are not fully understood. Here we examine tardigrade communities in nests of the red tree vole (Arborimus longicaudus True), an arboreal mammal occupying the canopy of coniferous forests in western Oregon and northwestern California. We found 12 species of tardigrades from resin ducts sampled from 43 nests along a transect that spanned the east-west range of the tree vole in southern Oregon. Tardigrade occurrence was more likely in larger trees and species numbers were significantly higher in areas that received more precipitation. At sites where they occurred, tardigrades were more abundant in tree vole nests at greater heights within the forest canopy. Of the 12 species of tardigrades that were found, seven have not been previously reported in Oregon. Our results suggest that tardigrades in forest canopies in the Pacific Northwest are impacted by regional precipitation gradients as well as local environmental variables, and that nest building by small mammals may facilitate dispersal of tardigrades within the forest canopy.

Evaluating the conservation value of ecological communities is critical for forest management but can be challenging because it is difficult to survey all taxonomic groups of conservation concern. Lichens have long been used as indicators of late successional habitats with particularly high conservation value because lichens are ubiquitous, sensitive to fine-scale environmental variation, and some species require old substrates. However, the efficacy of such lichen indicator systems has rarely been tested beyond narrow geographic areas, and their reliability has not been established with well-replicated quantitative research. Here, we develop a continuous lichen conservation index representing epiphytic macrolichen species affinities for late successional forests in the Pacific Northwest, USA. This index classifies species based on expert field experience and is similar to the “coefficient of conservatism” that is widely used for evaluating vascular plant communities in the central and eastern USA. We then use a large forest survey dataset to test whether the community-level lichen conservation index is related to forest stand age. We find that the lichen conservation index has a positive, linear relationship with forest stand age. In contrast, lichen species richness has only a weak, unimodal relationship with forest stand age, and a binary indicator approach (where species are assigned as either old growth forest indicators or not) has a substantially weaker relationship with forest stand age than the continuous lichen conservation index. Our findings highlight that lichen communities can be useful indicators of late successional habitats of conservation concern at a regional scale. Quantitative lichen indicator systems provide unique information about habitat conservation value that is not captured by traditional community metrics such as lichen species richness. More broadly, indicator systems based on expert experience can have strong biological relevance.

Encroachment of woody vegetation represents a significant global threat to biodiversity in grasslands, but practices used to reverse encroachment are rarely evaluated comprehensively. Several factors may drive encroachment, such as land use history, alteration of disturbance regimes, and local environment, but their relative importance is poorly understood. Another complicating factor is that encroachment may proceed via positive feedbacks that result in thresholds, beyond which its reversal is difficult. We ask what impact reintroducing frequent fire has on encroachment relative to the influences of landscape context and historical vegetation. We investigate whether woody cover frequency distributions suggest that feedbacks reinforce encroachment after a threshold of woody cover is surpassed. We analyze aerial photos in glade grasslands in Missouri, USA, to assess encroachment patterns over a 75-year period. Fire was excluded from this landscape for the first 45 years, and then reintroduced at varying frequencies in the last 30 years. Woody vegetation cover increased sevenfold from 1939 to 2014 overall. After the reintroduction of prescribed fire, woody cover stayed approximately constant in burned glades, but continued increasing in unburned glades. Woody cover followed bimodal frequency distributions in burned areas. Fire-tolerant vegetation tended to encroach near historically wooded areas, while fire-sensitive vegetation responded more to fire history. Altered disturbance regimes, in addition to numerous recognized drivers, can cause ecosystem state changes associated with losses to biodiversity. Conducting management early in the encroachment process and restoring grasslands at broad landscape scales may help counteract local feedbacks that promote encroachment.

Summary 1.Species with unique phenologies have distinct trait syndromes and environmental affinities, yet there has been little exploration of whether community assembly processes differ for plants with different phenologies. In this study, we ask whether early- and late-blooming species differ in the ways that dispersal, persistence, and resource-acquisition traits shape plant occurrence patterns in patchy habitats. 2.We sampled plant communities in 51 Ozark dolomite glade grasslands, which range in size from 100 ha. We modelled the occurrence of 71 spring- and 43 summer-blooming grassland species in these patches, using as predictors both environmental variables (landscape structure, soil resources) and plant traits related to dispersal, longevity, and resource acquisition. We were especially interested in how the environmental variables and plant traits interacted to determine the occurrence of phenological strategies in habitats that vary in size and isolation. 3.Summer-blooming species with better persistence and dispersal abilities had higher relative frequencies in smaller, more isolated habitat patches, and summer-blooming species with higher specific leaf area—suggesting fast growth and low stress tolerance—were more likely to occur in patches with greater soil organic matter and clay content. However, spring-blooming species showed much weaker interactions between functional traits and environmental gradients, perhaps because environmental conditions are less harsh in spring than in summer. 4.Synthesis: Several axes of plant life history variation may simultaneously influence community responses to habitat connectivity. In this case, explicitly considering plant phenology helped identify generalizable relationships between functional traits and landscape spatial structure. This article is protected by copyright. All rights reserved.

A central focus of ecology is identifying the factors that shape spatial patterns of species diversity and this is particularly relevant in an era of global change. Positive relationships between plant and consumer diversity are common, but could be driven by direct responses of each trophic level to underlying environmental gradients, or indirectly where changes in environmental conditions propagate through food webs. Here we use structural equation modeling to examine the relative importance of soil resource availability and disturbance (fire) in mediating relationships between plant and grasshopper richness in insular grasslands. We found a positive relationship between plant and consumer richness that became stronger after accounting for disturbance, despite unique responses of plants and consumers to the two environmental gradients. Plant richness responded to an underlying gradient in soil resource availability. Time since the last fire had a direct positive effect on grasshopper richness but had no effect on plant richness. This work supports that plant and consumer richness are functionally linked, rather than having similar responses to environmental gradients. By disentangling the direct and indirect processes underlying a positive relationship between plant and consumer diversity in a natural system that spans multiple environmental gradients, we demonstrate the importance of investigating biodiversity through explicit multivariate models.

Forest managers in many parts of the world are charged with protecting rare lichen species, including species growing near their range limits. Rare lichens may be particularly vulnerable to effects of climate change, and conserving lichen diversity necessitates understanding factors that limit species distributions. Habitat suitability envelopes for lichens are shifting as the climate changes, but it is unclear whether and how local (e.g., within-tree) lichen species distributions will shift. Conserving lichen biodiversity also requires effective field surveys to detect and monitor rare lichen populations. However, the reliability of rare lichen survey methods currently used across global forest lands is rarely tested. In this study, we quantify the canopy distribution of an epiphytic old-growth forest cyanolichen near its southern range limit and test whether ground surveys reliably detect canopy populations. Near its southern range limit, Lobaria oregana was most abundant in two distinct zones within tree crowns: on branches of large trees in the mid-crown, and on boles of small trees near ground level. The abundance of this species near ground level suggests that lichens may benefit from cooler, wetter microclimates near the equatorial edges of their ranges. Maintaining these microclimate habitats may be a key to long-term viability of rear edge lichen populations. Targeted ground surveys reliably detected L. oregana in litterfall underneath trees where it was abundant in the crowns. However, ground surveys did not reliably detect the lichen underneath trees when it occurred in the crowns in low abundance. Our results suggest that ground surveys are useful for characterizing abundant lichen species, but that canopy surveys (e.g., tree climbing) may be needed to reliably detect lichens when they occur at low abundance.

Sandstone glades in the Ozark highlands contain unique communities of vascular plants, including several species of conservation concern, as well as abundant communities of terricolous cryptogams—collectively termed biological soil crusts. Biological soil crusts have important ecological roles in grassland systems, such as preventing erosion and retaining soil moisture. Despite the conservation importance of sandstone glades, this ecosystem has received little scientific attention, and the drivers of plant diversity and soil crust prevalence in sandstone glades are poorly understood. In this study, we assessed relationships between soil crust cover and vascular plant species richness and tested whether dominance shifts from soil crusts to vascular plants along a soil gradient. Soil crust cover was negatively related to vascular plant species richness, and vascular plant richness increased (and crust cover decreased) with increasing soil organic matter. As soil organic matter increased, the propor...

Identifying processes that drive epiphytic lichen diversity and succession is important for directing conservation efforts and developing forest management plans for the maintenance of biodiversity and forest health. Stand age has been implicated as a key factor in driving epiphytic species diversity and community composition. However, understanding the influence of substrate age, independent of the many confounding variables that affect live and dead wood substrates in a forest habitat, can be difficult. To test the hypothesis that substrate age has distinct effects on lichen community assembly independent of surface area, we sampled communities of calicioid lichens and fungi growing on wooden buildings that ranged from 2 to 82 years old. We found a total of 17 species, with a strong positive correlation between species richness and substrate age. We also tested the effects of surface area on species richness and found no relationship between the two variables. Our results indicate that substrat...

Author(s): Richter, C; Rejmanek, M; Miller, JED; Welch, KR; Weeks, JM; Safford, H | Abstract: The combination of direct human influences and the effects of climate change are resulting in altered ecological disturbance regimes, and this is especially the case for wildfires. Many regions that historically experienced low–moderate severity fire regimes are seeing increased area burned at high severity as a result of interactions between high fuel loads and climate warming with a number of negative ecological effects. While ecosystem impacts of altered fire regimes have been examined in the literature, little is known of the effects of changing fire regimes on forest understory plant diversity even though understory taxa comprise the vast majority of forest plant species and play vital roles in overall ecosystem function. We examined understory plant diversity across gradients of wildfire severity in eight large wildfires in yellow pine and mixed conifer temperate forests of the Sierra Nevada, California, USA. We found a generally unimodal hump-shaped relationship between local (alpha) plant diversity and fire severity. High-severity burning resulted in lower local diversity as well as some homogenization of the flora at the regional scale. Fire severity class, post-fire litter cover, and annual precipitation were the best predictors of understory species diversity. Our research suggests that increases in fire severity in systems historically characterized by low and moderate severity fire may lead to plant diversity losses. These findings indicate that global patterns of increasing fire size and severity may have important implications for biodiversity.

While climate change has already profoundly influenced biodiversity through local extinctions, range shifts, and altered interactions, its effects on the evolutionary history contained within sets of coexisting species—or phylogenetic community diversity—have yet to be documented. Phylogenetic community diversity may be a proxy for the diversity of functional strategies that can help sustain ecological systems in the face of disturbances. Under climatic warming, phylogenetic diversity may be especially vulnerable to decline in plant communities in warm, water-limited regions, as intensified water stress eliminates drought-intolerant species that may be relicts of past wetter climates and may be distantly related to coexisting species. Here, we document a 19-y decline of phylogenetic diversity in a grassland community as moisture became less abundant and predictable at a critical time of the year. This decline was strongest in native forbs, particularly those with high specific leaf area, a trait indicating drought sensitivity. This decline occurred at the small spatial scale where species interact, but the larger regional community has so far been buffered against loss of phylogenetic diversity by its high levels of physical and biotic heterogeneity.

Exotic invasive plants threaten ecosystem integrity, and their success depends on a combination of abiotic factors, disturbances, and interactions with existing communities. In dryland ecosystems, soil biocrusts (communities of lichens, bryophytes, and microorganisms) can limit favorable microsites needed for invasive species establishment, but the relative importance of biocrusts for landscape-scale invasion patterns remains poorly understood. We examine effects of livestock grazing in habitats at high risk for invasion to test the hypothesis that disturbance indirectly favors exotic annual grasses by reducing biocrust cover. We present some of the first evidence that biocrusts increase site resistance to invasion at a landscape scale and mediate the effects of disturbance. Biocrust species richness, which is reduced by livestock grazing, also appears to promote native perennial grasses. Short mosses, as a functional group, appear to be particularly valuable for preventing invasion by exotic annual grasses. Our study suggests that maintaining biocrust communities with high cover, species richness, and cover of short mosses can increase resistance to invasion. These results highlight the potential of soil surface communities to mediate invasion dynamics and suggest promising avenues for restoration in dryland ecosystems.

Understanding how biotic communities respond to landscape spatial structure is critically important for conservation management as natural habitats become increasingly fragmented. However, empirical studies of the effects of spatial structure on plant species richness have found inconsistent results, suggesting that more comprehensive approaches are needed. We asked how landscape structure affects total plant species richness and the richness of a guild of specialized plants in a multivariate context. We sampled herbaceous plant communities at 56 dolomite glades (insular, fire-adapted grasslands) across the Missouri Ozarks, USA, and used structural equation modeling (SEM) to analyze the relative importance of landscape structure, soil resource availability, and fire history for plant communities. We found that landscape spatial structure, defined as the area-weighted proximity of glade habitat surrounding study sites (proximity index), had a significant effect on total plant species richness, but only after we controlled for environmental covariates. Richness of specialist species, but not generalists, was positively related to landscape spatial structure. Our results highlight that local environmental filters must be considered to understand the influence of landscape structure on communities and that unique species guilds may respond differently to landscape structure than the community as a whole. These findings suggest that both local environment and landscape context should be considered when developing management strategies for species of conservation concern in fragmented habitats.

Tardigrades live in many ecosystems, but local dispersal mechanisms and the influence of ecological gradients on tardigrade communities are not fully understood. Here we examine tardigrade communities in nests of the red tree vole (Arborimus longicaudus True), an arboreal mammal occupying the canopy of coniferous forests in western Oregon and northwestern California. We found 12 species of tardigrades from resin ducts sampled from 43 nests along a transect that spanned the east-west range of the red tree vole in southern Oregon. Tardigrade occurrence was more likely in larger trees and species numbers were significantly higher in areas that received more precipitation. At sites where they occurred, tardigrades were more abundant in red tree vole nests at greater heights within the forest canopy. Of the 12 species of tardigrades that were found, seven have not been previously reported in Oregon. Our results suggest that tardigrades in forest canopies in the Pacific Northwest are affected by regional precipitation gradients as well as local environmental variables, and that nest building by small mammals may facilitate dispersal of tardigrades within the forest canopy.

Many global ecosystems have undergone shifts in fire regimes in recent decades, such as changes in fire size, frequency, and/or severity. Recent research shows that increases in fire size, frequency, and severity can lead to long-persisting deforestation, but the consequences of shifting fire regimes for biodiversity of other vegetative organisms (such as understory plants, fungi, and lichens) remain poorly understood. Understanding lichen responses to wildfire is particularly important because lichens play crucial roles in nutrient cycling and supporting wildlife in many ecosystems. Lichen responses to fire have been little studied, and most previous research has been limited to small geographic areas (e.g. studies of a single fire), making it difficult to establish generalizable patterns. To investigate long-term effects of fire severity on lichen communities, we sampled epiphytic lichen communities in 104 study plots across California's greater Sierra Nevada region in areas that burned in five wildfires, ranging from 4 to 16 years prior to sampling. The conifer forest ecosystems we studied have undergone a notable increase in fire severity in recent decades, and we sample across the full gradient of fire severity to infer how shifting fire regimes may influence landscape-level biodiversity. We find that low-severity fire has little to no effect on lichen communities. Areas that burned at moderate and high severities, however, have significantly and progressively lower lichen richness and abundance. Importantly, we observe very little postfire lichen recolonization on burned substrates even more than 15 years after fire. Our multivariate model suggests that the hotter, drier microclimates that occur after fire removes forest canopies may prevent lichen reestablishment, meaning that lichens are not likely to recolonize until mature trees regenerate. These findings suggest that altered fire regimes may cause broad and long-persisting landscape-scale biodiversity losses that could ultimately impact multiple trophic levels.

Branches and boles of trees in wet forests are often carpeted with lichens and bryophytes capable of providing periodically saturated habitat suitable for microfauna, animals that include tardigrades, rotifers, nematodes, mites, and springtails. Although resident microfauna likely exhibit habitat preferences structured by fine-scale environmental factors, previous studies rarely report associations between microfaunal communities and habitat type (e.g., communities that develop in lichens vs. bryophytes). Microfaunal communities were examined across three types of epiphyte and three sampling heights to capture gradients of microenvironment. Tardigrades, rotifers, and nematodes were significantly more abundant in bryophytes than fruticose lichen or foliose lichen. Eight tardigrade species and four tardigrade taxa were found, representing two classes, three orders, six families, and eight genera. Tardigrade community composition was significantly different between bryophytes, foliose lichen, fruticose lichen, and sampling heights. We show that microenvironmental factors including epiphyte type and sampling height shape microfaunal communities and may mirror the environmental preferences of their epiphyte hosts.

Several notable lichens were found in the South Slough area near Coos Bay, Oregon, on a foray sponsored by the Northwest Lichenologists. A new record for Bryoria bicolor extends its southern range on the Pacific coast of North America, and information is presented on several other species, including Scoliciosporum sp., a little-reported, undescribed epiphyllous lichen.

Summary Background The validity of International Classification of Diseases-9 codes for liver disease has not been determined. Aim To examine the accuracy of International Classification of Diseases-9 codes for cirrhosis with hepatitis C virus or alcoholic liver disease and HIV or hepatitis B virus coinfection with hepatitis C virus in Veterans Affairs data. Methods We conducted a retrospective study comparing the Veterans Affairs administrative data with abstracted data from the Michael E. DeBakey VA Medical Center’s medical records. We calculated the positive predictive value, negative predictive value, per cent agreement and kappa. Results For cirrhosis codes, the positive predictive value (probability that cirrhosis is present among those with a code) and negative predictive value (probability that cirrhosis is absent among those without a code) were 90% and 87% with 88% agreement and kappa = 0.70. For hepatitis C virus codes, the positive predictive value and negative predictive value were 93% and 92%, yielding 92% agreement and kappa = 0.78. For alcoholic liver disease codes, the positive predictive value and negative predictive value were 71% and 98%, with 89% agreement and kappa = 0.74. All parameters for HIV coinfection with hepatitis C virus were >89%; however, the codes for hepatitis B virus coinfection had a positive predictive value of 43–67%. Conclusion These diagnostic codes (except hepatitis B virus) in Veterans Affairs administrative data are highly predictive of the presence of these conditions in medical records and can be reliably used for research.

We studied the proteasomal activity in synaptosomes obtained from tissues of the cerebral cortex, cerebellum, and hippocampus, as well as in the cytoplasm of cells of these brain structures, of rats subjected to long-lasting immobilization stress. It was demonstrated that the chymotrypsin-like activity of proteasomes in synaptosomes of the cerebral cortex and hippocampus of stressed animals was significantly higher (380 and 560%, respectively) as compared with that observed in control rats. The chymotrypsin-like and peptidylglutamyl peptide hydrolase activities of proteasomes in the cytoplasm of cortical cells under stress conditions also increased (210 and 180%, respectively). These data show that the activity of a multicatalytic proteolytic complex is sharply increased in synaptic terminals of cells of the cerebral cortex and hippocampus of stressed animals. The above complex plays a crucial role in the utilization of short-lived proteins whose molecules form receptors and ion channels; the amount of such proteins is especially great in synaptic terminals.

The sp3-bonded “transparent phase” of carbon, formed by compression of single-crystal graphite to 18 GPa, has been found to be quenchable to atmospheric pressure at low temperatures (

The validity of International Classification of Diseases-9 codes for liver disease has not been determined.To examine the accuracy of International Classification of Diseases-9 codes for cirrhosis with hepatitis C virus or alcoholic liver disease and HIV or hepatitis B virus coinfection with hepatitis C virus in Veterans Affairs data.We conducted a retrospective study comparing the Veterans Affairs administrative data with abstracted data from the Michael E. DeBakey VA Medical Center's medical records. We calculated the positive predictive value, negative predictive value, per cent agreement and kappa.For cirrhosis codes, the positive predictive value (probability that cirrhosis is present among those with a code) and negative predictive value (probability that cirrhosis is absent among those without a code) were 90% and 87% with 88% agreement and kappa = 0.70. For hepatitis C virus codes, the positive predictive value and negative predictive value were 93% and 92%, yielding 92% agreement and kappa = 0.78. For alcoholic liver disease codes, the positive predictive value and negative predictive value were 71% and 98%, with 89% agreement and kappa = 0.74. All parameters for HIV coinfection with hepatitis C virus were89%; however, the codes for hepatitis B virus coinfection had a positive predictive value of 43-67%.These diagnostic codes (except hepatitis B virus) in Veterans Affairs administrative data are highly predictive of the presence of these conditions in medical records and can be reliably used for research.

A retrospective review of 115 randomly pulled hospital charts of patients admitted to the care of osteopathic physicians at an American Osteopathic Association-accredited primary care hospital revealed a significant decline in the frequency of structural examinations in history and physical examinations during a merger and relocation, as well as with increasing level of training of the examiner (chi 2 test, P.001). Attending physicians completed fewer structural examinations (45% of their history and physical examinations) compared to house staff (70%) and students (92%). A follow-up anonymous survey of 100 osteopathic physicians and students (response rate, 58%) revealed that the low overall frequency of structural examination completion (60%) was due primarily to attending physicians who considered this examination less relevant or impractical for their hospitalized patients. These results indicate that education on relevance of structural examination and manipulative treatment for acutely ill patients needs to be directed not only to house staff and students but also to attending physicians to preserve and improve the use of osteopathic principles at osteopathic hospitals.

A historic change to improve outcomes of a long-standing problem in completing veterans' compensation and pension examinations has resulted in increased access to care, higher client satisfaction, and increased system efficiencies. This article describes the change from medical care as the exclusive responsibility of physicians to an innovative use of nurse practitioners in a system that exists in a highly structured, centrally coordinated patient care practice.

A decade of research has proven that plants can be genetically engineered to resist virus infection through expression of viral CP genes, as well as other viral genes and sequences. Additional opportunities for development of resistant plants will require research focused on mechanisms of protection, improvements in expression vector design, and transformation of new crop species. As each of these technologies is utilized singly or in combination to generate resistant crop varieties, the full impact of such engineered resistance will be realized.

Exposure workups are an important responsibility for infection control personnel. A well-designed plan for investigating exposures, which includes appropriate algorithms, will enable infection control personnel to evaluate exposures rapidly and consistently so that nosocomial transmission is minimized. Infection control personnel should use their own data to develop policies and procedures that suit the needs of their facility. After they have implemented the plan, infection control personnel should continue to collect data on exposures so they can continuously improve their performance.

Connections in the adult visual system are highly precise. In mammals, the axonal projections of retinal ganglion cells from the two eyes are segregated into distinct layers within the dorsal lateral geniculate nucleus (dLGN)1–3. In addition, each geniculate neuron receives input from only one type of ganglion cell. In the ferret and cat, the major classes of ganglion cells that project to the dLGN, the alpha and beta ganglion cells4,5, each comprise subpopulations of cells which have receptive field centers that respond either to the onset or to the offset of a light stimulus6. In the ferret, On and Off retinal inputs are organized into sublaminae within each eye-specific layer7,8. No On and Off sublaminae are present in the cat dLGN, but individual geniculate neurons are contacted only by On or Off ganglion cells9,10.

Biological soil crusts are ecosystem engineers in arid and semi-arid habitats; they affect soil chemistry, stability, and vegetation. Their ecosystem functions may vary depending on species composition; however, lichen species diversity is poorly known in the Pacific Northwestern drylands of North America. We sampled 59 random and 20 intuitive plots throughout central and eastern Oregon identifying 99 lichen taxa, 33 of which occurred in only one plot and seven of which were new to Oregon (Acarospora obpallens, A. terricola, Catapyrenium psoromoides, Placidium fingens, P. pilosellum, P. yoshimurae and Psora luridella). We compile records from herbaria and other studies to evaluate the rarity of observed species and potentially rare species known from nearby locations. We conclude that 37 species are likely rare or uncommon in our study area. Many of these appear to be associated with calcareous substrates. We model occurrences in relation to climate and soil variables for four uncommon lichen spe...