1. Prioritizing potential ACE2 inhibitors in the COVID-19 pandemic: Insights from a molecular mechanics-assisted structure-based virtual screening experiment.
- Author
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Teralı K, Baddal B, and Gülcan HO
- Subjects
- Amino Acid Motifs, Angiotensin-Converting Enzyme 2, Betacoronavirus enzymology, COVID-19, Carbazoles chemistry, Catalytic Domain, Coronavirus Infections drug therapy, Coronavirus Infections virology, Drug Repositioning, Dyphylline analogs & derivatives, Dyphylline chemistry, Host-Pathogen Interactions, Humans, Hydroxamic Acids chemistry, Ligands, Molecular Docking Simulation, Pandemics, Paromomycin analogs & derivatives, Paromomycin chemistry, Pemetrexed chemistry, Peptidyl-Dipeptidase A metabolism, Pneumonia, Viral drug therapy, Pneumonia, Viral virology, Protein Binding, Protein Interaction Domains and Motifs, Protein Structure, Secondary, SARS-CoV-2, Structure-Activity Relationship, Thermodynamics, Angiotensin-Converting Enzyme Inhibitors chemistry, Antiviral Agents chemistry, Betacoronavirus chemistry, Peptidyl-Dipeptidase A chemistry, Small Molecule Libraries chemistry
- Abstract
Angiotensin-converting enzyme 2 (ACE2) is a membrane-bound zinc metallopeptidase that generates the vasodilatory peptide angiotensin 1-7 and thus performs a protective role in heart disease. It is considered an important therapeutic target in controlling the COVID-19 outbreak, since SARS-CoV-2 enters permissive cells via an ACE2-mediated mechanism. The present in silico study attempted to repurpose existing drugs for use as prospective viral-entry inhibitors targeting human ACE2. Initially, a clinically approved drug library of 7,173 ligands was screened against the receptor using molecular docking, followed by energy minimization and rescoring of docked ligands. Finally, potential binders were inspected to ensure molecules with different scaffolds were engaged in favorable contacts with both the metal cofactor and the critical residues lining the receptor's active site. The results of the calculations suggest that lividomycin, burixafor, quisinostat, fluprofylline, pemetrexed, spirofylline, edotecarin, and diniprofylline emerge as promising repositionable drug candidates for stabilizing the closed (substrate/inhibitor-bound) conformation of ACE2, thereby shifting the relative positions of the receptor's critical exterior residues recognized by SARS-CoV-2. This study is among the rare ones in the relevant scientific literature to search for potential ACE2 inhibitors. In practical terms, the drugs, unmodified as they are, may be introduced into the therapeutic armamentarium of the ongoing fight against COVID-19 now, or their scaffolds may serve as rich skeletons for designing novel ACE2 inhibitors in the near future., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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