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Despite recent advances in modeling forest–rainfall relationships, the current understanding of changes in observed rainfall patterns resulting from historical deforestation remains limited. To address this knowledge gap, we analyzed how 40 years of deforestation has altered rainfall patterns in South America as well as how current Amazonian forest cover sustains rainfall. First, we develop a spatiotemporal neural network model to simulate rainfall as a function of vegetation and climate inputs in South America; second, we assess the rainfall effects of observed deforestation in South America during the periods 1982–2020 and 2000–2020; third, we assess the potential rainfall changes in the Amazon biome under two deforestation scenarios. We find that, on average, cumulative deforestation in South America from 1982 to 2020 has reduced rainfall over the period 2016–2020 by 18% over deforested areas, and by 9% over non‐deforested areas across South America. We also find that more recent deforestation, that is, from 2000 to 2020, has reduced rainfall over the period 2016–2020 by 10% over deforested areas and by 5% over non‐deforested areas. Deforestation between 1982 and 2020 has led to a doubling in the area experiencing a minimum dry season of 4 months in the Amazon biome. Similarly, in the Cerrado region, there has been a corresponding doubling in the area with a minimum dry season of 7 months. These changes are compared to a hypothetical scenario where no deforestation occurred. Complete conversion of all Amazon forest land outside protected areas would reduce average annual rainfall in the Amazon by 36% and complete deforestation of all forest cover including protected areas would reduce average annual rainfall in the Amazon by 68%. Our findings emphasize the urgent need for effective conservation measures to safeguard both forest ecosystems and sustainable agricultural practices. [ABSTRACT FROM AUTHOR]