28 results on '"Dufault NS"'
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2. Sensor-Based Quantification of Peanut Disease Defoliation Using an Unmanned Aircraft System and Multispectral Imagery.
- Author
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Barocco RL, Clohessy JW, O'Brien GK, Dufault NS, Anco DJ, and Small IM
- Subjects
- Seasons, Aircraft, Plant Diseases, Arachis microbiology, Fungicides, Industrial pharmacology
- Abstract
Early leaf spot ( Passalora arachidicola ) and late leaf spot ( Nothopassalora personata ) are two of the most economically important foliar fungal diseases of peanut, often requiring seven to eight fungicide applications to protect against defoliation and yield loss. Rust ( Puccinia arachidis ) may also cause significant defoliation depending on season and location. Sensor technologies are increasingly being utilized to objectively monitor plant disease epidemics for research and supporting integrated management decisions. This study aimed to develop an algorithm to quantify peanut disease defoliation using multispectral imagery captured by an unmanned aircraft system. The algorithm combined the Green Normalized Difference Vegetation Index and the Modified Soil-Adjusted Vegetation Index and included calibration to site-specific peak canopy growth. Beta regression was used to train a model for percent net defoliation with observed visual estimations of the variety 'GA-06G' (0 to 95%) as the target and imagery as the predictor (train: pseudo- R
2 = 0.71, test k-fold cross-validation: R2 = 0.84 and RMSE = 4.0%). The model performed well on new data from two field trials not included in model training that compared 25 ( R2 = 0.79, RMSE = 3.7%) and seven ( R2 = 0.87, RMSE = 9.4%) fungicide programs. This objective method of assessing mid-to-late season disease severity can be used to assist growers with harvest decisions and researchers with reproducible assessment of field experiments. This model will be integrated into future work with proximal ground sensors for pathogen identification and early season disease detection.[Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license., Competing Interests: The author(s) declare no conflict of interest.- Published
- 2024
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3. Environmental Factors Influencing Stem Rot Development in Peanut: Predictors and Action Thresholds for Disease Management.
- Author
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Sanjel S, Colee J, Barocco RL, Dufault NS, Tillman BL, Punja ZK, Seepaul R, and Small IM
- Subjects
- Crops, Agricultural, Soil, Disease Management, Arachis, Plant Diseases prevention & control
- Abstract
Peanuts grown in tropical, subtropical, and temperate regions are susceptible to stem rot, which is a soilborne disease caused by Athelia rolfsii . Due to the lack of reliable environmental-based scheduling recommendations, stem rot control relies heavily on fungicides that are applied at predetermined intervals. We conducted inoculated field experiments for six site-years in North Florida to examine the relationship between germination of A. rolfsii sclerotia: the inoculum, stem rot symptom development in the peanut crop, and environmental factors such as soil temperature (ST), soil moisture, relative humidity (RH), precipitation, evapotranspiration, and solar radiation. Window-pane analysis with hourly and daily environmental data for 5- to 28-day periods before each disease assessment were evaluated to select model predictors using correlation analysis, regularized regression, and exhaustive feature selection. Our results indicated that within-canopy ST (at 0.05 m belowground) and RH (at 0.15 m aboveground) were the most important environmental variables that influenced the progress of mycelial activity in susceptible peanut crops. Decision tree analysis resulted in an easy-to-interpret one-variable model (adjusted R
2 = 0.51, Akaike information criterion [AIC] = 324, root average square error [RASE] = 14.21) or two-variable model (adjusted R2 = 0.61, AIC = 306, RASE = 10.95) that provided an action threshold for various disease scenarios based on number of hours of canopy RH above 90% and ST between 25 and 35°C in a 14-day window. Coupling an existing preseason risk index for stem rot, such as Peanut Rx, with the environmentally based predictors identified in this study would be a logical next step to optimize stem rot management. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license., Competing Interests: The author(s) declare no conflict of interest.- Published
- 2024
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4. First report of Bipolaris sorokiniana leaf spot disease on watermelon (Citrullus lanatus) in Florida.
- Author
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Adhikari A, Beckham KA, Harmon CL, Dufault NS, Goss E, and Harmon PF
- Abstract
Watermelon is an important crop in Florida, representing $88.2 million in cash receipts in 2015 (USDA/NASS 2017). In April and May 2021, the UF/IFAS Plant Diagnostic Center in Gainesville, Florida received eight diseased watermelon leaf samples from Alachua, Gilcrest, Levy, and Suwannee counties in Florida. Lesions were round to oblong, light gray to tan with reddish brown margins and white to light gray center, and some were coalescing resulting in about 15% disease severity. Symptomatic leaf tissue (0.5 cm2) was surface sterilized in 0.6% sodium hypochlorite for one minute, rinsed with sterile tap water, plated onto water agar media plates, and incubated at 27°C under 12-h light/dark cycle for 7 days. Characteristic Bipolaris conidia with gray to black brownish cottony mycelial growth were consistently found growing from plated lesions. The pathogen was isolated from two of the eight samples using a 0.5 mm diameter sterile metal needle to transfer a single conidium onto DifcoTM Potato Dextrose Agar (PDA) plates. Three isolates were designated G21-562 from Levy and G21-599a and G21-599b from Alachua County. All three isolates produced curved or straight, cylindrical, obclavate, distoseptate brownish gray conidia with 3 to 8 septa, mostly tapering towards ends with dark brownish to black hilum, that ranged from averaged 62um x 25um (n=30, SD=8 for length and 3 for width). Conidiophores were brownish, septate, smooth, and straight, single or in small groups, simple or branched, and swollen at the upper tip. Internal transcribed spacer region (ITS) and partial glyceraldehyde-3-phosphate dehydrogenase (GPDH) gene sequences were amplified using primers ITS1/ITS4 and GPD-1/GPD-2 (Berbee et al. 1999). Reference sequences (Adhikari et al. 2020 and Manamgoda et al. 2014) were aligned using MUSCLE and trimmed to consistent length. Using concatenated sequence alignments of both loci, a maximum likelihood phylogenetic tree was constructed based on K2+G substitution model selected by BIC using Mega X (Kumar et al. 2018) with 1,000 bootstrap. The ITS and GPDG sequences of G21_599b, G21_599a and G21_562 (GenBank accessions OK614094 to 96, OP297398 to 400) showed 100% identity across 888 nucleotides across both loci to B. sorokiniana isolates CBS_110.14 and CBS_ 120.24 and were distinct from other reference isolates. To fulfill Koch's postulates, all three isolates were grown on PDA at 27°C and 12-h light/dark cycle. After a week, conidia were harvested in sterile water, and the conidial suspensions were adjusted to 105 conidia/ml using a hemocytometer. Each conidial suspension and Tween 20 water control was sprayed onto three seedlings of 'Sugar Baby' watermelon until runoff, and inoculated seedlings were sealed in a plastic bag for 24 hrs. The experiment was done in a greenhouse (20- 25°C) and repeated once. After a week of incubation, the same leaf lesion symptoms described above were observed on seedlings inoculated with conidia, whereas seedlings sprayed with the control were asymptomatic. Isolations from symptomatic tissue produced gray to black mycelia with conidia that were the same as described from field samples. To our knowledge, this is the first report of leaf spot on watermelon caused by B. sorokiniana. B. sorokiniana is a common pathogen of grasses and agronomic crops (Farr and Rossman 2020). The extent to which this emerging disease of Florida watermelon may negatively impact production is unknown and should be the subject of future observation and research.
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- 2022
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5. A Contrast of Three Inoculation Techniques used to Determine the Race of Unknown Fusarium oxysporum f.sp. niveum Isolates.
- Author
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Fulton JC, Cullen MA, Beckham K, Sanchez T, Xu Z, Stern P, Vallad G, Meru G, McGregor C, and Dufault NS
- Subjects
- Plant Diseases, Citrullus, Fusarium
- Abstract
Fusarium wilt of watermelon (Citrullus lanatus), caused by Fusarium oxysporum f. sp. niveum (Fon), has reemerged as a major production constraint in the southeastern USA, especially in Florida. Deployment of integrated pest management strategies, such as race-specific resistant cultivars, requires information on the diversity and population density of the pathogen in growers' fields. Despite some progress in developing molecular diagnostic tools to identify pathogen isolates, race determination often requires bioassay approaches. Race typing was conducted by root-dip inoculation, infested kernel seeding method, and the modified tray-dip method with each of the four watermelon differentials (Black Diamond, Charleston Grey, Calhoun Grey, Plant Introduction 296341-FR). Isolates are assigned a race designation by calculation of disease incidence five weeks after inoculation. If less than 33% of the plants for a particular cultivar were symptomatic, they were categorized as resistant. Those cultivars with incidence greater than 33% were regarded as susceptible. This paper describes three different methods of inoculation to ascertain race, root-dip, infested kernel, and modified tray-dip inoculation, whose applications vary according to the experimental design.
- Published
- 2021
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6. Fusarium oxysporum f. sp. niveum Molecular Diagnostics Past, Present and Future.
- Author
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Hudson O, Fulton JC, Dong AK, Dufault NS, and Ali ME
- Subjects
- Biological Assay, Genome, Fungal, Genomics methods, Phenotype, Fusariosis diagnosis, Fusariosis microbiology, Fusarium, Molecular Diagnostic Techniques methods, Molecular Diagnostic Techniques trends, Plant Diseases microbiology
- Abstract
Watermelon is an important commercial crop in the Southeastern United States and around the world. However, production is significantly limited by biotic factors including fusarium wilt caused by the hemibiotrophic fungus Fusarium oxysporum forma specialis niveum (Fon). Unfortunately, this disease has increased significantly in its presence over the last several decades as races have emerged which can overcome the available commercial resistance. Management strategies include rotation, improved crop resistance, and chemical control, but early and accurate diagnostics are required for appropriate management. Accurate diagnostics require molecular and genomic strategies due to the near identical genomic sequences of the various races. Bioassays exist for evaluating both the pathogenicity and virulence of an isolate but are limited by the time and resources required. Molecular strategies are still imperfect but greatly reduce the time to complete the diagnosis. This article presents the current state of the research surrounding races, both how races have been detected and diagnosed in the past and future prospects for improving the system of differentiation. Additionally, the available Fon genomes were analyzed using a strategy previously described in separate formae speciales avirulence gene association studies in Fusarium oxysporum races.
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- 2021
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7. Fusarium oxysporum as an Opportunistic Fungal Pathogen on Zinnia hybrida Plants Grown on board the International Space Station.
- Author
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Schuerger AC, Amaradasa BS, Dufault NS, Hummerick ME, Richards JT, Khodadad CL, Smith TM, and Massa GD
- Subjects
- Fungi, Plant Leaves, Asteraceae microbiology, Fusarium, Plant Diseases microbiology, Spacecraft
- Abstract
A plant production system called Veggie was launched to the International Space Station (ISS) in 2014. In late 2015, during the growth of Zinnia hybrida cv. 'Profusion' in the Veggie hardware, plants developed chlorosis, leaf curling, fungal growth that damaged leaves and stems, and eventually necrosis. The development of symptoms was correlated to reduced air flow leading to a significant buildup of water enveloping the leaves and stems in microgravity. Symptomatic tissues were returned to Earth on 18 May 2016 and were immediately processed to determine the primary causal agent of the disease. The presumptive pathogen was identified as Fusarium oxysporum by morphological features of microconidia and conidiophores on symptomatic tissues; that is, by epifluorescent microscopy (EFM), scanning electron microscopy (SEM), metabolic microarrays, and ITS sequencing. Both EFM and SEM imaging of infected tissues showed that germinating conidia were capable of stomatal penetration and thus acted as the primary method for infecting host tissues. A series of ground-based pathogenicity assays were conducted with healthy Z. hybrida plants that were exposed to reduced-airflow and high-water stress ( i.e., encased in sealed bags) or were kept in an unstressed configuration. Koch's postulates were successfully completed with Z. hybrida plants in the lab, but symptoms only matched ISS-flown symptomatic tissues when the plants were stressed with high-water exposure. Unstressed plants grown under similar lab conditions failed to develop the symptoms observed with plants on board the ISS. The overall results of the pathogenicity tests imply that F. oxysporum acted as an opportunistic pathogen on severely high-water stressed plants. The source of the opportunistic pathogen is not known, but virulent strains of F. oxysporum were not recovered from unused materials in the Veggie plant pillow growth units assayed after the flight.
- Published
- 2021
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8. Phylogenetic and phenotypic characterization of Fusarium oxysporum f. sp. niveum isolates from Florida-grown watermelon.
- Author
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Fulton JC, Amaradasa BS, Ertek TS, Iriarte FB, Sanchez T, Ji P, Paret ML, Hudson O, Ali ME, and Dufault NS
- Subjects
- Animals, Florida, Phylogeography, Citrullus microbiology, Fusarium classification, Fusarium genetics, Mycoses microbiology, Plant Diseases microbiology
- Abstract
Fusarium wilt of watermelon (Citrullus lanatus) caused by Fusarium oxysporum f. sp. niveum (Fon), has become an increasing concern of farmers in the southeastern USA, especially in Florida. Management of this disease, most often through the use of resistant cultivars and crop rotation, requires an accurate understanding of an area's pathogen population structure and phenotypic characteristics. This study improved the understanding of the state's pathogen population by completing multilocus sequence analysis (MLSA) of two housekeeping genes (BT and TEF) and two loci (ITS and IGS), aggressiveness and race-determining bioassays on 72 isolates collected between 2011 and 2015 from major watermelon production areas in North, Central, and South Florida. Multilocus sequence analysis (MLSA) failed to group race 3 isolates into a single large clade; moreover, clade membership was not apparently correlated with aggressiveness (which varied both within and between clades), and only slightly with sampling location. The failure of multilocus sequence analysis using four highly conserved housekeeping genes and loci to clearly group and delineate known Fon races provides justification for future whole genome sequencing efforts whose more robust genomic comparisons will provide higher resolution of intra-species genetic distinctions. Consequently, these results suggest that identification of Fon isolates by race determination alone may fail to detect economically important phenotypic characteristics such as aggressiveness leading to inaccurate risk assessment., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2021
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9. Peanut disease epidemiology under dynamic microclimate conditions and management practices in North Florida.
- Author
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Barocco RL, Sanjel S, Dufault NS, Barrett C, Broughton B, Wright DL, and Small IM
- Abstract
Diverse field characteristics, weather patterns, and management practices can result in variable microclimates. The objective was to relate in-field microclimate conditions with peanut diseases and yield and determine the effect of irrigation and fungicides within these environments. Irrigation did not have a major impact on disease and yield. Stem rot ( Athelia rolfsii ) and early ( Passalora arachidicola ) and late ( Nothopassalora personata ) leaf spot were most affected by changes in environmental patterns across seasons. Average non-treated stem rot was 12.9% in 2017 which dropped considerably in 2018 to 0.2% but emerged again in 2019 to 3.2%. Stem rot incidence varied across the field, and the response to fungicides depended on management zone. Leaf spot defoliation in non-treated plots was severe in 2019 reaching an average of 73% at 126 days after planting but only reached 15% in 2017 and 35% in 2019 at the same stage. A low-input fungicide schedule was able to reduce foliar disease in all zones and seasons, but the microclimatic conditions in the low-lying area favored leaf spot in 2017 and 2018 although not in the dryer 2019 season. Seasonal differences in disease and plant growth affected the level of protection against average yield loss using a standard low-input program which in 2017 (527 kg/ha) was not as great as 2018 (2,235 kg/ha) or 2019 (1,763 kg/ha). Disease prediction models built on dynamic environmental factors in the context of multiple pathogens and natural field conditions could be developed to improve within-season management decisions for more efficient fungicide inputs.
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- 2021
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10. Marker Development for Differentiation of Fusarium Oxysporum f. sp. Niveum Race 3 from Races 1 and 2.
- Author
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Hudson O, Waliullah S, Fulton JC, Ji P, Dufault NS, Keinath A, and Ali ME
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- Base Sequence, Citrullus microbiology, Fusarium classification, Fusarium pathogenicity, Host-Pathogen Interactions, Plant Diseases microbiology, Polymerase Chain Reaction methods, Species Specificity, Virulence genetics, Biomarkers metabolism, DNA, Fungal genetics, Fusarium genetics, Genome, Fungal genetics
- Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), is pathogenic only to watermelon and has become one of the main limiting factors in watermelon production internationally. Detection methods for this pathogen are limited, with few published molecular assays available to differentiate FON from other formae speciales of F. oxysporum . FON has four known races that vary in virulence but are difficult and costly to differentiate using traditional inoculation methods and only race 2 can be differentiated molecularly. In this study, genomic and chromosomal comparisons facilitated the development of a conventional polymerase chain reaction (PCR) assay that could differentiate race 3 from races 1 and 2, and by using two other published PCR markers in unison with the new marker, the three races could be differentiated. The new PCR marker, FNR3-F/FNR3-R, amplified a 511 bp region on the "pathogenicity chromosome" of the FON genome that is absent in race 3. FNR3-F/FNR3-R detected genomic DNA down to 2.0 pg/µL. This marker, along with two previously published FON markers, was successfully applied to test over 160 pathogenic FON isolates from Florida, Georgia, and South Carolina. Together, these three FON primer sets worked well for differentiating races 1, 2, and 3 of FON. For each marker, a greater proportion (60 to 90%) of molecular results agreed with the traditional bioassay method of race differentiation compared to those that did not. The new PCR marker should be useful to differentiate FON races and improve Fusarium wilt research.
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- 2021
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11. Early Detection of Airborne Inoculum of Nothopassalora personata in Spore Trap Samples from Peanut Fields Using Quantitative PCR.
- Author
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Munir M, Wang H, Dufault NS, and Anco DJ
- Abstract
A quantitative PCR (qPCR)-assay was developed to detect airborne inoculum of Nothopassalora personata , causal agent of late leaf spot (LLS) on peanut, collected with a modified impaction spore trap. The qPCR assay was able to consistently detect as few as 10 spores with purified DNA and 25 spores based on crude DNA extraction from rods. In 2019, two spore traps were placed in two peanut fields with a history of LLS. Sampling units were replaced every 2 to 4 days and tested with the developed qPCR assay, while plots were monitored for symptom development. The system detected inoculum 35 to 56 days before visual symptoms developed in the field, with detection related to environmental parameters affecting pathogen life-cycle and disease development. This study develops the framework of the qPCR spore trap system and represents the initial steps towards validation of the performance of the system for use as a decision support tool to complement integrated management of LLS., Competing Interests: The authors declare no conflict of interest.
- Published
- 2020
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12. Sixty-One Years Following Registration, Phorate Applied In-Furrow at Planting Suppresses Development of Late Leaf Spot on Peanut.
- Author
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Anco DJ, Thomas JS, Wright DL, Dufault NS, and Small IM
- Abstract
Late and early leaf spot are caused by Nothopassalora personata and Passalora arachidicola , respectively, and are damaging diseases of peanut ( Arachis hypogaea L.) capable of defoliation and yield loss. Management of these diseases is most effective through the integration of tactics that reduce starting inoculum and prevent infection. The insecticide phorate was first registered in 1959 and has been used in peanut production for decades in-furrow at planting to suppress thrips. Phorate further provides significant suppression of Tomato spotted wilt virus infection beyond suppression of its thrips vector alone by activating defense-related responses in the peanut plant. From six experiments conducted from 2017 to 2019 in Blackville, SC, Reddick, FL, and Quincy, FL, significantly less leaf spot defoliation was exhibited on peanuts treated with phorate in-furrow at planting (26%) compared with nontreated checks (48%). In-season fungicides were excluded from five of the experiments, whereas the 2018 Quincy, FL, experiment included eight applications on a 15-day interval. Across individual experiments, significant suppression of defoliation caused by late leaf spot was observed from 64 to 147 days after planting. Although more variable within location-years, pod yield following phorate treatment was overall significantly greater than for nontreated peanut (2,330 compared with 2,030 kg/ha; P = 0.0794). The consistent defoliation suppression potential was estimated to confer an average potential net economic yield savings of $90 to $120 per hectare under analogous leaf spot defoliation. To our knowledge, these are the first data in the 61 years since its registration demonstrating significant suppression of leaf spot on peanut following application of phorate in-furrow at planting. Results support phorate use in peanut as an effective and economical tactic to incorporate to manage late and early leaf spot infections and development of fungicide resistance.
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- 2020
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13. BLIGHTSIM: A New Potato Late Blight Model Simulating the Response of Phytophthora infestans to Diurnal Temperature and Humidity Fluctuations in Relation to Climate Change.
- Author
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Narouei-Khandan HA, Shakya SK, Garrett KA, Goss EM, Dufault NS, Andrade-Piedra JL, Asseng S, Wallach D, and Bruggen AHCV
- Abstract
Temperature response curves under diurnal oscillating temperatures differ from those under constant conditions for all stages of the Phytophthora infestans infection cycle on potatoes. We developed a mechanistic model (BLIGHTSIM) with an hourly time step to simulate late blight under fluctuating environmental conditions and predict late blight epidemics in potato fields. BLIGHTSIM is a modified susceptible (S), latent (L), infectious (I) and removed (R) compartmental model with hourly temperature and relative humidity as driving variables. The model was calibrated with growth chamber data covering one infection cycle and validated with field data from Ecuador. The model provided a good fit to all data sets evaluated. There was a significant interaction between average temperature and amplitude in their effects on the area under the disease progress curve (AUDPC) as predicted from growth chamber data on a single infection cycle. BLIGHTSIM can be incorporated in a potato growth model to study effects of diurnal temperature range on late blight impact under climate change scenarios.
- Published
- 2020
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14. Draft Genome Sequences of Three Fusarium circinatum Isolates Used To Inoculate a Pedigreed Population of Pinus elliottii Seedlings.
- Author
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Fulton JC, Huguet-Tapia JC, Adams SM, Dufault NS, Quesada T, and Brawner JT
- Abstract
Here, we announce the draft genome sequences of three Fusarium circinatum isolates that were used to inoculate slash pines ( Pinus elliottii ) at the U.S. Forest Service Resistance Screening Center in Asheville, North Carolina. The genomes of these isolates were similar to other publicly available genomes, with average nucleotide identity values of >0.98., (Copyright © 2020 Fulton et al.)
- Published
- 2020
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15. Peanut Yield Loss in the Presence of Defoliation Caused by Late or Early Leaf Spot.
- Author
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Anco DJ, Thomas JS, Jordan DL, Shew BB, Monfort WS, Mehl HL, Small IM, Wright DL, Tillman BL, Dufault NS, Hagan AK, and Campbell HL
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- Virginia, Arachis, Ascomycota
- Abstract
Late and early leaf spot, respectively caused by Nothopassalora personata and Passalora arachidicola , are damaging diseases of peanut ( Arachis hypogaea ) capable of defoliating canopies and reducing yield. Although one of these diseases may be more predominant in a given area, both are important on a global scale. To assist informed management decisions and quantify relationships between end-of-season defoliation and yield loss, meta-analyses were conducted over 140 datasets meeting established criteria. Slopes of proportion yield loss with increasing defoliation were estimated separately for Virginia and runner market type cultivars. Yield loss for Virginia types was described by an exponential function over the range of defoliation levels, with a loss increase of 1.2 to 2.2% relative to current loss levels per additional percent defoliation. Results for runner market type cultivars showed yield loss to linearly increase 2.2 to 2.8% per 10% increase in defoliation for levels up to approximately 95% defoliation, after which the rate of yield loss was exponential. Defoliation thresholds to prevent economic yield loss for Virginia and runner types were estimated at 40 and 50%, respectively. Although numerous factors remain important in mitigating overall yield losses, the integration of these findings should aid recommendations about digging under varying defoliation intensities and peanut maturities to assist in minimizing yield losses.
- Published
- 2020
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16. Widespread QoI Fungicide Resistance Revealed Among Corynespora cassiicola Tomato Isolates in Florida.
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MacKenzie KJ, Xavier KV, Wen A, Timilsina S, Adkison HM, Dufault NS, and Vallad GE
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- Drug Resistance, Fungal, Florida, Fungal Proteins, Plant Diseases, Fungicides, Industrial, Solanum lycopersicum
- Abstract
Target spot of tomato caused by Corynespora cassiicola is one of the most economically destructive diseases of tomato in Florida. A collection of 123 isolates from eight counties in Florida were evaluated for sensitivity to azoxystrobin and fenamidone based on mycelial growth inhibition (MGI), spore germination (SG), detached leaflet assays (DLAs), and sequence-based analysis of the cytochrome b gene ( cytb ). Cleavage of cytb by restriction enzyme ( Fnu 4HI) revealed the presence of a mutation conferring a glycine (G) to alanine (A) mutation at amino acid position 143 (G143A) in approximately 90% of the population, correlating with quinone outside inhibitor (QoI) resistance based on MGI (<40% at 5 μg/ml), SG (<50% at 1 and 10 μg/ml), and DLA (<10% severity reduction). The mutation conferring a phenylalanine (F) to leucine (L) substitution at position 129 (F129L) was confirmed in moderately resistant isolates (#9, #19, and #74) based on MGI (40 to 50% at 5 μg/ml), SG (<50% at 1 μg/ml and >50% at 10 μg/ml), and DLA (>10% and <43% severity reduction) for both QoI fungicides, whereas sensitive isolates (#1, #4, #7, #28, #29, #46, #61, #74, #75, #76, #91, #95, and #118) based on MGI (>50% at 5 μg/ml), SG (>50% at 1 μg/ml and 10 μg/ml), and DLA (>50% severity reduction) correlated to non-mutation-containing isolates or those with a silent mutation. This study indicates that QoI resistance among C. cassiicola isolates from tomato is widespread in Florida and validates rapid screening methods using MGI or molecular assays to identify resistant isolates in future studies.
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- 2020
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17. Multiyear Regional Evaluation of Foliar Fungicide Applications for Cotton Target Spot Management in the Southeastern United States.
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Mehl HL, Dufault NS, Allen TW, Hagan AK, Price P, Kemerait RC, Kelly H, Mulvaney MJ, and Nichols RL
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- Gossypium, Plant Diseases, Southeastern United States, Ascomycota, Fungicides, Industrial
- Abstract
Fungicide programs for managing target spot of cotton caused by Corynespora cassiicola were evaluated over 15 site-years in the southeastern United States between 2014 and 2016. Two cultivars, hypothesized to vary in target spot susceptibility, PhytoGen 499WRF (PHY499) and Deltapine 1137B2RF (DPL1137), and four fungicides (azoxystrobin, flutriafol, pyraclostrobin, pyraclostrobin + fluxapyroxad) plus nontreated control, were compared. Fungicide programs consisted of 1) a single application at first flower or disease onset and 2) the first application followed by a second 14 days later. Treatments were applied in a factorial, randomized complete block design. Target spot onset and severity varied among site-years. Except when severity was low, target spot-associated defoliation was greater on PHY499 than on DP1137. Fungicides delayed disease development and defoliation, but application number had little impact. Based on a meta-analysis of 15 site-years, pyraclostrobin-based applications resulted in a 4 to 6% yield preservation, and yield preservation was greater at site-years with early disease onset and >40% target spot associated defoliation. Results suggest a single well-timed application of a pyraclostrobin-based fungicide reduces defoliation and protects cotton yield at locations with high target spot severity. Additional research is needed to identify risk factors for target spot-associated yield losses in cotton production systems.
- Published
- 2020
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18. Comparing Stagonosporopsis spp. Fungicide Resistance Profiles in Florida and East China Cucurbit Production Systems.
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Newark MJ, Li P, Yang XP, Paret ML, and Dufault NS
- Subjects
- China, Florida, Georgia, Plant Diseases microbiology, Agriculture trends, Ascomycota drug effects, Cucurbita microbiology, Drug Resistance, Fungal, Fungicides, Industrial pharmacology
- Abstract
Gummy stem blight, caused by Stagonosporopsis spp., is a major disease of cucurbits in the United States and China that is managed primarily through the use of fungicides. The objective of this study was to monitor and compare the recent fungicide resistance profiles of Stagonosporopsis spp. in Florida open-field and East China protected-structure production systems. Isolates of Stagonosporopsis spp. were evaluated for sensitivity to the commonly used fungicides azoxystrobin, boscalid, tebuconazole, and thiophanate-methyl at discriminatory rates of 0.096, 0.034, 0.128, and 100 mg/liter, respectively. Isolates were collected from Jiangsu, Jiangxi, Zhejiang, and Anhui provinces in China ( n = 69), 12 counties in Florida ( n = 89), and one county in Georgia ( n = 6). More than 50% of isolates from Florida and East China were resistant to thiophanate-methyl. Boscalid resistance was detected in both isolate collections but was two times more frequent in China. Resistance to azoxystrobin was detected in 66% of isolates in Florida but only 7% in China. Tebuconazole was effective in controlling the mycelia growth of Stagonosporopsis spp. in both collections. The results indicate that both production systems currently face similar challenges related to the development of fungicide resistance in Stagonosporopsis spp. However, the resistance profiles are unique for both production systems.
- Published
- 2020
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19. Molecular Epidemiology of Pseudomonas syringae pv. syringae Causing Bacterial Leaf Spot of Watermelon and Squash in Florida.
- Author
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Newberry EA, Babu B, Roberts PD, Dufault NS, Goss EM, Jones JB, and Paret ML
- Subjects
- DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Florida, Multilocus Sequence Typing, Phenotype, Phylogeny, Plant Diseases statistics & numerical data, Plant Leaves microbiology, Polymerase Chain Reaction, Pseudomonas syringae genetics, Pseudomonas syringae pathogenicity, RNA, Ribosomal, 16S genetics, Virulence, Citrullus microbiology, Cucurbita microbiology, Molecular Epidemiology, Plant Diseases microbiology, Pseudomonas syringae isolation & purification
- Abstract
From 2013 to 2014, bacterial leaf spot epidemics incited by Pseudomonas syringae pv. syringae affected an estimated 3,000 ha of watermelon and squash in Florida, and caused foliar blighting and transplant losses in severely affected fields. To investigate the diversity of the causal agent, we isolated 28 P. syringae strains from diseased plants grown in 10 Florida and Georgia counties over the course of 2 years. Strains were confirmed as P. syringae through sequence analysis of the 16S ribosomal RNA, phenotypic, and biochemical profiling; however, 20 displayed an atypical phenotype by exhibiting nonfluorescent activity on King's medium B agar and being negative for ice-nucleating activity. Multilocus sequence analysis and BOX polymerase chain reaction revealed the presence of two haplotypes among the collected strains that grouped into two distinct clades within P. syringae phylogroup 2. Pathogenicity testing showed that watermelon, cantaloupe, and squash seedlings were susceptible to a majority of these strains. Although both haplotypes were equally virulent on cantaloupe, they differed in virulence on watermelon and squash. The distribution of one haplotype in 9 of 10 Florida and Georgia counties sampled indicated that these epidemics were associated with the recent introduction of a novel clonal P. syringae lineage throughout major watermelon production areas in Florida.
- Published
- 2018
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20. Fruit quality of seedless watermelon grafted onto squash rootstocks under different production systems.
- Author
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Liu Q, Zhao X, Brecht JK, Sims CA, Sanchez T, and Dufault NS
- Subjects
- Citrullus embryology, Consumer Behavior, Fusarium, Sensation, Agriculture methods, Citrullus growth & development, Cucurbita, Food Quality, Plant Roots microbiology, Plant Roots physiology, Seeds
- Abstract
Background: The market demand for seedless watermelon has been continuously increasing because of consumer preference. Grafting is a useful tool to manage soilborne diseases in watermelon production, but the use of squash rootstocks may negatively affect watermelon fruit quality. Currently, most research has focused on seeded cultivars, while grafting effects on seedless watermelons remain largely unknown. This multi-season study was conducted to assess the effects of squash rootstocks, including both Cucurbita maxima × C. moschata and C. moschata cultivars, with intact or excised and regenerated roots, on fruit quality of seedless watermelon 'Melody' using both instrumental and sensory measurements under different production scenarios. The grafted watermelon plants were also challenged by field inoculation with Fusarium oxysporum f.sp. niveum., Results: A combination of instrumental measurements and consumer sensory analyses suggested that fruit quality of the seedless watermelon 'Melody' was not impacted by the use of the squash rootstocks used in this study, which included soluble solids content, titratable acidity, pH and most fruit sensory properties. Watermelon flesh firmness was increased by grafting but the grafting effect on lycopene content was inconclusive. Root excision and regeneration did not influence the grafting effect, whereas the grafting effect on flesh firmness varied among the rootstocks under Fusarium inoculation., Conclusion: Overall, grafting with squash rootstocks did not reduce fruit quality attributes of 'Melody' but improved texture. Our results support incorporating grafting into integrated management programs for seedless watermelon production. © 2017 Society of Chemical Industry., (© 2017 Society of Chemical Industry.)
- Published
- 2017
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21. Epidemiology and management of bacterial leaf spot on watermelon caused by Pseudomonas syringae.
- Author
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Newberry EA, Ritchie L, Babu B, Sanchez T, Beckham KA, Jones JB, Freeman JH, Dufault NS, and Paret ML
- Abstract
Bacterial leaf spot of watermelon caused by Pseudomonas syringae has been an emerging disease in the southeastern United States in recent years. Disease outbreaks in Florida were widespread from 2013 to 2014 and resulted in foliar blighting at the early stages of the crop and transplant losses. We conducted a series of field trials at two locations over the course of two years to examine the chemical control options that may be effective in management of this disease, and to investigate the environmental conditions conducive for bacterial leaf spot development. Weekly applications of acibenzolar-S-methyl (ASM) foliar, ASM drip, or copper hydroxide mixed with ethylene bis-dithiocarbamate were effective in reducing the standardized area under the disease progress curve (P < 0.05). Pearson's correlation test demonstrated a negative relationship between the average weekly temperature and disease severity (-0.77, P = 0.0002). When incorporated into a multiple regression model with the square root transformed average weekly rainfall, these two variables accounted for 71% of the variability observed in the weekly disease severity (P < 0.0001). This information should be considered when choosing the planting date for watermelon seedlings as the cool conditions often encountered early in the spring season are conducive for bacterial leaf spot development.
- Published
- 2017
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22. From Select Agent to an Established Pathogen: The Response to Phakopsora pachyrhizi (Soybean Rust) in North America.
- Author
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Kelly HY, Dufault NS, Walker DR, Isard SA, Schneider RW, Giesler LJ, Wright DL, Marois JJ, and Hartman GL
- Subjects
- Host-Pathogen Interactions, North America, Pest Control, Phakopsora pachyrhizi classification, Phakopsora pachyrhizi pathogenicity, Plant Diseases, Phakopsora pachyrhizi physiology, Glycine max microbiology
- Abstract
The pathogen causing soybean rust, Phakopsora pachyrhizi, was first described in Japan in 1902. The disease was important in the Eastern Hemisphere for many decades before the fungus was reported in Hawaii in 1994, which was followed by reports from countries in Africa and South America. In 2004, P. pachyrhizi was confirmed in Louisiana, making it the first report in the continental United States. Based on yield losses from countries in Asia, Africa, and South America, it was clear that this pathogen could have a major economic impact on the yield of 30 million ha of soybean in the United States. The response by agencies within the United States Department of Agriculture, industry, soybean check-off boards, and universities was immediate and complex. The impacts of some of these activities are detailed in this review. The net result has been that the once dreaded disease, which caused substantial losses in other parts of the world, is now better understood and effectively managed in the United States. The disease continues to be monitored yearly for changes in spatial and temporal distribution so that soybean growers can continue to benefit by knowing where soybean rust is occurring during the growing season.
- Published
- 2015
- Full Text
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23. Potential effects of diurnal temperature oscillations on potato late blight with special reference to climate change.
- Author
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Shakya SK, Goss EM, Dufault NS, and van Bruggen AH
- Subjects
- Circadian Rhythm, Climate Change, Plant Diseases microbiology, Plant Leaves microbiology, Temperature, Models, Statistical, Phytophthora infestans physiology, Plant Diseases statistics & numerical data, Solanum tuberosum microbiology
- Abstract
Global climate change will have effects on diurnal temperature oscillations as well as on average temperatures. Studies on potato late blight (Phytophthora infestans) development have not considered daily temperature oscillations. We hypothesize that growth and development rates of P. infestans would be less influenced by change in average temperature as the magnitude of fluctuations in daily temperatures increases. We investigated the effects of seven constant (10, 12, 15, 17, 20, 23, and 27°C) and diurnally oscillating (±5 and ±10°C) temperatures around the same means on number of lesions, incubation period, latent period, radial lesion growth rate, and sporulation intensity on detached potato leaves inoculated with two P. infestans isolates from clonal lineages US-8 and US-23. A four-parameter thermodynamic model was used to describe relationships between temperature and disease development measurements. Incubation and latency progression accelerated with increasing oscillations at low mean temperatures but slowed down with increasing oscillations at high mean temperatures (P < 0.005), as hypothesized. Infection efficiency, lesion growth rate, and sporulation increased under small temperature oscillations compared with constant temperatures but decreased when temperature oscillations were large. Thus, diurnal amplitude in temperature should be considered in models of potato late blight, particularly when predicting effects of global climate change on disease development.
- Published
- 2015
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24. First Report of Sclerotinia Stem Rot Caused by Sclerotinia sclerotiorum on Brassica carinata in Florida.
- Author
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Young HM, Srivastava P, Paret ML, Dankers H, Wright DL, Marois JJ, and Dufault NS
- Abstract
Brassica carinata A. Braun, commonly referred to as Ethiopian rapeseed, a near relative of collards and mustard, has become the object of increasing interest as an oil crop. It has been reported that B. carinata adapts better and is more productive than B. napus (canola) in adverse conditions, such as clay and sandy soils and under low management cropping systems (1). In late February 2012, symptoms typical of sclerotinia stem rot were observed in B. carinata trials (cultivars 090867 EM and 080814 EM) at the University of Florida, North Florida Research and Education Center located in Quincy, FL. Approximately 20 to 30% of the B. carinata cultivar 090867 EM were observed to have symptoms and approximately 5% of cultivar 080814 EM displayed symptoms. Stems had white mycelia growing on the outside, plants were lodging and spherical to cylindrical, 3 to 8 mm, and black sclerotia were found outside and inside bleached stems. Sclerotia from diseased stems were surface sterilized and placed in 9-cm diameter petri plates on quarter strength potato dextrose agar (PDA) amended with 25% lactic acid. Fungal cultures consisting of white mycelia and medium-sized (mean 4 mm), black, irregular sclerotia were consistently recovered and identified as Sclerotinia sclerotiorum (Lib.) de Bary based on morphological characteristics (3). Sequence analyses were conducted on mycelium by extracting fungal DNA with the Qiagen DNeasy Plant Mini Kit (Valencia, CA). PCR amplification was performed using primers ITS1 and ITS4. The BLAST search revealed that the sequence (GenBank Accession No. JX307092) had 99 and 100% sequence identity with S. sclerotiorum GenBank accessions JN013184.1 and JN012606.1. Pathogenicity was determined by inoculating six 1-month-old B. carinata plants (cultivars 090867 EM and 080814 EM) that were grown in greenhouse pots (20 cm in diameter). Mycelia plugs (8 mm in diameter) were excised from the colony margin after 6 days of incubation at room temperature (approximately 25°C), and placed on stems, at the soil line, of B. carinata plants. Six control plants were inoculated with noncolonized PDA plugs. All plants were enclosed in plastic bags that had been sprayed with water on the inside to maintain high humidity and kept in the laboratory at room temperature (approximately 25°C). Symptoms similar to those observed in the field were evident after 3 days on inoculated plants and S. sclerotiorum was reisolated. In the controls, no symptoms developed and the fungus could not be isolated. The experiment was repeated with similar results. The majority of rapeseed production is in North Dakota, where sclerotinia stem rot caused by S. sclerotiorum is a major fungal disease affecting production (2). Currently, there is no significant B. carinata production in Florida; however, interest in biofuels could lead to an increase in planted acreage and sclerotinia stem rot could become a significant disease problem in areas of Florida were B. carinata is planted. To our knowledge, this is the first report of sclerotinia stem rot of B. carinata caused by S. sclerotiorum in Florida. References: (1) M. Cardone et al. Biomass and Bioenergy. 25:623, 2003. (2) L. E. del Río et al. Plant Dis. 91:191, 2007. (3) L. M. Kohn. Phytopathology 69:881, 1979.
- Published
- 2012
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25. Salmonella can reach tomato fruits on plants exposed to aerosols formed by rain.
- Author
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Cevallos-Cevallos JM, Gu G, Danyluk MD, Dufault NS, and van Bruggen AH
- Subjects
- Cellulose biosynthesis, Cellulose metabolism, Fimbriae, Bacterial, Humans, Phenotype, Rain, Salmonella metabolism, Salmonella enterica genetics, Salmonella enterica isolation & purification, Salmonella enterica metabolism, Aerosols, Food Contamination, Solanum lycopersicum microbiology, Salmonella enterica growth & development
- Abstract
Outbreaks of Salmonella enterica have been associated with tomatoes and traced back to production areas but the spread of Salmonella in agricultural fields is still poorly understood. Post-rain Salmonella transfer from a point source to the air and then to tomato plants was evaluated. GFP-labeled kanamycin-resistant S. enterica serovar Typhimurium (10(8)CFU/mL) with and without expression of the rdar morphotype (rough colonies; cells with fimbriae and cellulose) was used as the point source in the center of a rain simulator. Rain intensities of 60 and 110 mm/h were applied for 5, 10, 20, and 30 min. Petri dishes with lactose broth and tomato plants with fruit (50-80 cm high) were placed in the simulator after the rain had ceased. Salmonella recovery from air was maximum (300 CFU/plate) after a rain episode of 60 mm/h for 10 min at distances of at least 85.5 cm above the source and when the rdar morphotype strain was used. Small scale experiments showed that the smooth-colony strain without fimbriae precipitated from the air in significantly higher numbers than the rdar strain. Transfer of aerial Salmonella with the rdar morphotype to tomato fruits on plants followed a beta distribution (2.5950, 4.7393) within the generalized range from 0 to 30 min of rain. Results show for the first time that Salmonella may transfer from rain to the air and contaminate tomato fruits at levels that could possibly be infectious to humans., (Copyright © 2012 Elsevier B.V. All rights reserved.)
- Published
- 2012
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26. Removal of Wet Deposited Phakopsora pachyrhizi Urediniospores from Soybean Leaves by Subsequent Rainfall.
- Author
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Dufault NS, Isard SA, Marois JJ, and Wright DL
- Abstract
Urediniospores of Phakopsora pachyrhizi, the soybean rust fungus, have a high probability of being removed from a soybean leaf by water runoff associated with subsequent rainfall after wet deposition. The effects of rainfall intensity, subsequent spore-free rainfall duration, and soybean leaf sample height on uredinia density were used to evaluate the retention of urediniospores on soybean leaf tissue. Rainfall simulations of 45 and 85 mm/h were conducted on potted soybean plants that were inoculated with 2 min of urediniospore-injected simulated rainfall and exposed to 0, 1, and 30 min of subsequent spore-free rainfall. Urediniospore retention was estimated using uredinia density values obtained from a detached leaf bioassay for the sample heights of soil level, mid-canopy, and upper-canopy. Soil level leaflets inoculated with the 45 mm/h rainfall intensity treatment had a higher (P < 0.01) mean number of uredinia/cm
2 than the 85 mm/h treatment, even though they were inoculated with approximately 40% fewer urediniospores. Subsequent spore-free rainfall reduced (P < 0.01) uredinia density by as much as 38 and 91% for the 1- and 30-min durations, respectively. The relationship between uredinia density proportion and depth of rainfall was best fit using an inverse power empirical model. Our results indicate that a majority of the wet deposited P. pachyrhizi urediniospores would be removed from soybean leaf surfaces by subsequent rainfall, but sufficient percentages of spores (10 to 25%) will likely remain on the leaf tissue long enough to germinate and infect during heavy summer rains lasting ≥30 min.- Published
- 2010
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27. The Effect of Solar Irradiance on the Mortality of Phakopsora pachyrhizi Urediniospores.
- Author
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Isard SA, Dufault NS, Miles MR, Hartman GL, Russo JM, De Wolf ED, and Morel W
- Abstract
Soybean rust, caused by Phakopsora pachyrhizi, may be the most important foliar disease of soybean. Within the last 10 years, the fungus has moved to many new geographical locations via spread of airborne urediniospores. The objective of this study was to determine the relationship between urediniospore viability and exposure to solar radiation. Urediniospores of P. pachyrhizi were exposed in Capitán Miranda, Paraguay, to determine the deleterious effects of sunlight. Concomitant total solar (0.285 to 2.8 μm) and ultraviolet (0.295 to 0.385 μm) irradiance measurements were used to predict urediniospore germination. Urediniospores exposed to doses of solar and ultraviolet (UV) radiation ≥27.3 MJ/m
2 and ≥1.2 MJ/m2 , respectively, did not germinate. The proportions of urediniospores that germinated, normalized with respect to the germination proportion for unexposed urediniospores from the same collections, were a linear function of solar irradiance (R2 = 0.83). UV measurements predicted normalized germination proportions equally well. Results of inoculation experiments with exposed P. pachyrhizi urediniospores supported the results of the germination trials, although the effects of moderate levels of irradiance varied. The relationship between urediniospore viability and exposure to solar radiation has been incorporated into the U.S. Department of Agriculture's soybean rust aerobiological model that provides North American soybean growers with decision support for managing soybean rust.- Published
- 2006
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28. Role of Temperature and Moisture in the Production and Maturation of Gibberella zeae Perithecia.
- Author
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Dufault NS, De Wolf ED, Lipps PE, and Madden LV
- Abstract
Fusarium graminearum (teleomorph Gibberella zeae) is the most common pathogen of Fusarium head blight (FHB) in North America. Ascospores released from the perithecia of G. zeae are a major source of inoculum for FHB. The influence of temperature and moisture on perithecial production and development was evaluated by monitoring autoclaved inoculated cornstalk sections in controlled environments. Perithecial development was assessed at all combinations of five temperatures (12, 16, 20, 24, and 28°C) and four moisture levels with means (range) -0.45 (-0.18, -1.16), -1.30 (-0.81, -1.68), -2.36 (-1.34, -3.53) and -4.02 (-2.39, -5.88) MPa. Moisture levels of -0.45 and -1.30 MPa and temperatures from 16 to 24°C promoted perithecial production and development. Temperatures of 12 and 28°C and moisture levels of -2.36 and -4.02 MPa either slowed or limited perithecial production and development. The water potential of -1.30 MPa had mature perithecia after 10 days at 20°C, but not until after 15 days for 24°C. In contrast, few perithecia achieved maturity and produced ascospores at lower moisture levels (-2.36 and -4.02 MPa) and low (12°C) and high (28°C) temperatures. In the future, it may be possible to use the information gathered in these experiments to improve the accuracy of FHB forecasting systems.
- Published
- 2006
- Full Text
- View/download PDF
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