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This study is intended for forest owners considering options to increase the efficiency of the production of forest seedlings in automated nurseries. In the short rotation technology of the Scots pine (Pinus sylvestris L.), the production of seedlings was integrated in the process of grading seeds by spectrometric features, followed by the fall outplanting of containerized seedlings to a restorable post-pyrogenic site. There are studies of the spectrometric effect grading viable seeds, but a negligible amount of testing has been conducted on the seedling's field performance from these seeds. It was very important for us to evaluate the morphogenesis of juvenile Scots pine trees in relation to the change in morphological features—increase in root collar diameter (RCD-increment) and increase in stem height (SH-increment)—in the second and third growing season from the field outplanting. To determine the nature of the interaction between independent (RCD increase), dependent (SH-increment), and categorical (seed spectrometric categories and timespans) variables, a regression analysis was performed using the R statistical software. All coefficients of the linear models are statistically significant at the 1% significance level, and all are positively associated with an increase in seedling height. On average, a RCD increment by 0.1 cm causes a SH-increment by 0.72 ± 0.16 cm (p = 9.779 × 10−6). In addition, in 2020, compared to 2019, the SH-increment was 5.46 ± 0.37 cm (p < 0.001). The seeds' differentiation into spectrometric categories is strongly correlated with the stem height increment (p < 0.001). Thus, in order to improve the plant propagation protocol, it seems advisable to first condition the seeds in accordance with the spectrometric feature, and to then apply a coating (by pelleting or encapsulating) in order to improve the storage and seeding conditions. For a medium-term assessment of the short rotation technology with an integrated seed spectrometric grading in the future, the morphogenesis of Scots pine trees at 5, 7 and 10 growing seasons from the seedlings field outplanting is controlled. [ABSTRACT FROM AUTHOR]