120 results on '"Dos Santos JS"'
Search Results
2. Integrated genomic characterization of oesophageal carcinoma
- Author
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Kim, J, Bowlby, R, Mungall, AJ, Robertson, AG, Odze, RD, Cherniack, AD, Shih, J, Pedamallu, CS, Cibulskis, C, Dunford, A, Meier, SR, Raphael, BJ, Wu, H-T, Wong, AM, Willis, JE, Bass, AJ, Derks, S, Garman, K, McCall, SJ, Wiznerowicz, M, Pantazi, A, Parfenov, M, Thorsson, V, Shmulevich, I, Dhankani, V, Miller, M, Sakai, R, Wang, K, Schultz, N, Shen, R, Arora, A, Weinhold, N, Sanchez-Vega, F, Kelsen, DP, Zhang, J, Felau, I, Demchok, J, Rabkin, CS, Camargo, MC, Zenklusen, JC, Bowen, J, Leraas, K, Lichtenberg, TM, Curtis, C, Seoane, JA, Ojesina, AI, Beer, DG, Gulley, ML, Pennathur, A, Luketich, JD, Zhou, Z, Weisenberger, DJ, Akbani, R, Lee, J-S, Liu, W, Mills, GB, Zhang, W, Reid, BJ, Hinoue, T, Laird, PW, Shen, H, Piazuelo, MB, Schneider, BG, McLellan, M, Taylor-Weiner, A, Lawrence, M, Cibulskis, K, Stewart, C, Getz, G, Lander, E, Gabriel, SB, Ding, L, McLellan, MD, Miller, CA, Appelbaum, EL, Cordes, MG, Fronick, CC, Fulton, LA, Mardis, ER, Wilson, RK, Schmidt, HK, Fulton, RS, Ally, A, Balasundaram, M, Carlsen, R, Chuah, E, Dhalla, N, Holt, RA, Jones, SJM, Kasaian, K, Brooks, D, Li, HI, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, KL, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Wong, T, Beroukhim, R, Bullman, S, Murray, BA, Saksena, G, Schumacher, SE, Gabriel, S, Meyerson, M, Hadjipanayis, A, Kucherlapati, R, Ren, X, Park, PJ, Lee, S, Kucherlapati, M, Yang, L, Baylin, SB, Hoadley, KA, Bootwalla, MS, Lai, PH, Van den Berg, DJ, Berrios, M, Holbrook, A, Hwang, J-E, Jang, H-J, Weinstein, JN, Lu, Y, Sohn, BH, Mills, G, Seth, S, Protopopov, A, Bristow, CA, Mahadeshwar, HS, Tang, J, Song, X, Cho, J, Defrietas, T, Frazer, S, Gehlenborg, N, Heiman, DI, Lawrence, MS, Lin, P, Noble, MS, Doug, V, Zhang, H, Polak, P, Chin, L, Bernard, B, Iype, L, Reynolds, SM, Abeshouse, A, Armenia, J, Kundra, R, Ladanyi, M, Kjong-Van, L, Gao, J, Sander, C, Chakravarty, D, Radenbaugh, A, Hegde, A, Penny, R, Crain, D, Gardner, J, Curley, E, Mallery, D, Morris, S, Paulauskis, J, Shelton, T, Shelton, C, Frick, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Ramirez, NC, Wise, L, Zmuda, E, Tarvin, K, Saller, C, Park, YS, Button, M, Carvalho, AL, Reis, RM, Matsushita, MM, Lucchesi, F, de Oliveira, AT, Le, X, Paklina, O, Setdikova, G, Lee, J-H, Bennett, J, Iacocca, M, Huelsenbeck-Dill, L, Potapova, CO, Voronina, O, Liu, O, Fulidou, V, Cates, C, Sharp, A, Behera, M, Force, S, Khuri, F, Owonikoko, T, Pickens, A, Ramalingam, S, Sica, G, Dinjens, W, van Nistelrooij, A, Wijnhoven, B, Sandusky, G, Stepa, S, Juhl, IH, Zornig, C, Kwon, SY, Kelsen, D, Kim, GHK, Bartlett, J, Parfitt, J, Chetty, R, Darling, G, Knox, J, Wong, R, El-Zimaity, H, Liu, G, Boussioutas, A, Park, DY, Kemp, R, Carlotti, CG, da Cunha Tirapelli, DP, Saggioro, FP, Sankarankutty, AK, Noushmehr, H, dos Santos, JS, Trevisan, FA, Eschbacher, J, Dubina, M, Mozgovoy, E, Carey, F, Chalmers, S, Forgie, I, Godwin, A, Reilly, C, Madan, R, Naima, Z, Ferrer-Torres, D, Rathmell, WK, Dhir, R, Luketich, J, Ajani, JA, Janjigian, Y, Tang, L, Cheong, J-H, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Demchok, JA, Ferguson, ML, Shaw, KRM, sheth, M, Tarnuzzer, R, Wang, Z, Hutter, CM, Sofia, HJ, Kim, J, Bowlby, R, Mungall, AJ, Robertson, AG, Odze, RD, Cherniack, AD, Shih, J, Pedamallu, CS, Cibulskis, C, Dunford, A, Meier, SR, Raphael, BJ, Wu, H-T, Wong, AM, Willis, JE, Bass, AJ, Derks, S, Garman, K, McCall, SJ, Wiznerowicz, M, Pantazi, A, Parfenov, M, Thorsson, V, Shmulevich, I, Dhankani, V, Miller, M, Sakai, R, Wang, K, Schultz, N, Shen, R, Arora, A, Weinhold, N, Sanchez-Vega, F, Kelsen, DP, Zhang, J, Felau, I, Demchok, J, Rabkin, CS, Camargo, MC, Zenklusen, JC, Bowen, J, Leraas, K, Lichtenberg, TM, Curtis, C, Seoane, JA, Ojesina, AI, Beer, DG, Gulley, ML, Pennathur, A, Luketich, JD, Zhou, Z, Weisenberger, DJ, Akbani, R, Lee, J-S, Liu, W, Mills, GB, Zhang, W, Reid, BJ, Hinoue, T, Laird, PW, Shen, H, Piazuelo, MB, Schneider, BG, McLellan, M, Taylor-Weiner, A, Lawrence, M, Cibulskis, K, Stewart, C, Getz, G, Lander, E, Gabriel, SB, Ding, L, McLellan, MD, Miller, CA, Appelbaum, EL, Cordes, MG, Fronick, CC, Fulton, LA, Mardis, ER, Wilson, RK, Schmidt, HK, Fulton, RS, Ally, A, Balasundaram, M, Carlsen, R, Chuah, E, Dhalla, N, Holt, RA, Jones, SJM, Kasaian, K, Brooks, D, Li, HI, Ma, Y, Marra, MA, Mayo, M, Moore, RA, Mungall, KL, Schein, JE, Sipahimalani, P, Tam, A, Thiessen, N, Wong, T, Beroukhim, R, Bullman, S, Murray, BA, Saksena, G, Schumacher, SE, Gabriel, S, Meyerson, M, Hadjipanayis, A, Kucherlapati, R, Ren, X, Park, PJ, Lee, S, Kucherlapati, M, Yang, L, Baylin, SB, Hoadley, KA, Bootwalla, MS, Lai, PH, Van den Berg, DJ, Berrios, M, Holbrook, A, Hwang, J-E, Jang, H-J, Weinstein, JN, Lu, Y, Sohn, BH, Mills, G, Seth, S, Protopopov, A, Bristow, CA, Mahadeshwar, HS, Tang, J, Song, X, Cho, J, Defrietas, T, Frazer, S, Gehlenborg, N, Heiman, DI, Lawrence, MS, Lin, P, Noble, MS, Doug, V, Zhang, H, Polak, P, Chin, L, Bernard, B, Iype, L, Reynolds, SM, Abeshouse, A, Armenia, J, Kundra, R, Ladanyi, M, Kjong-Van, L, Gao, J, Sander, C, Chakravarty, D, Radenbaugh, A, Hegde, A, Penny, R, Crain, D, Gardner, J, Curley, E, Mallery, D, Morris, S, Paulauskis, J, Shelton, T, Shelton, C, Frick, J, Gastier-Foster, JM, Gerken, M, Leraas, KM, Ramirez, NC, Wise, L, Zmuda, E, Tarvin, K, Saller, C, Park, YS, Button, M, Carvalho, AL, Reis, RM, Matsushita, MM, Lucchesi, F, de Oliveira, AT, Le, X, Paklina, O, Setdikova, G, Lee, J-H, Bennett, J, Iacocca, M, Huelsenbeck-Dill, L, Potapova, CO, Voronina, O, Liu, O, Fulidou, V, Cates, C, Sharp, A, Behera, M, Force, S, Khuri, F, Owonikoko, T, Pickens, A, Ramalingam, S, Sica, G, Dinjens, W, van Nistelrooij, A, Wijnhoven, B, Sandusky, G, Stepa, S, Juhl, IH, Zornig, C, Kwon, SY, Kelsen, D, Kim, GHK, Bartlett, J, Parfitt, J, Chetty, R, Darling, G, Knox, J, Wong, R, El-Zimaity, H, Liu, G, Boussioutas, A, Park, DY, Kemp, R, Carlotti, CG, da Cunha Tirapelli, DP, Saggioro, FP, Sankarankutty, AK, Noushmehr, H, dos Santos, JS, Trevisan, FA, Eschbacher, J, Dubina, M, Mozgovoy, E, Carey, F, Chalmers, S, Forgie, I, Godwin, A, Reilly, C, Madan, R, Naima, Z, Ferrer-Torres, D, Rathmell, WK, Dhir, R, Luketich, J, Ajani, JA, Janjigian, Y, Tang, L, Cheong, J-H, Chudamani, S, Liu, J, Lolla, L, Naresh, R, Pihl, T, Sun, Q, Wan, Y, Wu, Y, Demchok, JA, Ferguson, ML, Shaw, KRM, sheth, M, Tarnuzzer, R, Wang, Z, Hutter, CM, and Sofia, HJ
- Abstract
Oesophageal cancers are prominent worldwide; however, there are few targeted therapies and survival rates for these cancers remain dismal. Here we performed a comprehensive molecular analysis of 164 carcinomas of the oesophagus derived from Western and Eastern populations. Beyond known histopathological and epidemiologic distinctions, molecular features differentiated oesophageal squamous cell carcinomas from oesophageal adenocarcinomas. Oesophageal squamous cell carcinomas resembled squamous carcinomas of other organs more than they did oesophageal adenocarcinomas. Our analyses identified three molecular subclasses of oesophageal squamous cell carcinomas, but none showed evidence for an aetiological role of human papillomavirus. Squamous cell carcinomas showed frequent genomic amplifications of CCND1 and SOX2 and/or TP63, whereas ERBB2, VEGFA and GATA4 and GATA6 were more commonly amplified in adenocarcinomas. Oesophageal adenocarcinomas strongly resembled the chromosomally unstable variant of gastric adenocarcinoma, suggesting that these cancers could be considered a single disease entity. However, some molecular features, including DNA hypermethylation, occurred disproportionally in oesophageal adenocarcinomas. These data provide a framework to facilitate more rational categorization of these tumours and a foundation for new therapies.
- Published
- 2017
3. Astronotus ocellatus (Cichlidae: Pisces) and Macropodus opercularis (Anabatidae: Pisces) as predators of immature Aedes fluviatilis (Diptera: Culicidae) and Biomphalaria glabrata (Mollusca: Planorbidae)
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dos Santos Js, do Carmo Ja, Delza de Moura Soares, Carlos Tito Guimarães, and R. A. G. B. Consoli
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Microbiology (medical) ,lcsh:Arctic medicine. Tropical medicine ,macropodus opercularis ,Mosquito Control ,snails ,lcsh:RC955-962 ,lcsh:QR1-502 ,biological control ,Snail ,lcsh:Microbiology ,Aedes ,Astronotus ocellatus ,biology.animal ,parasitic diseases ,Animals ,Biomphalaria glabrata ,Pest Control, Biological ,Mollusca ,Freshwater mollusc ,mosquitoes ,Biomphalaria ,biology ,Ecology ,fungi ,Fishes ,fishes ,biology.organism_classification ,Macropodus ,Astronotus ,Planorbidae ,Brazil - Abstract
Two fish species, Astronotus ocellatus (Cichlidae) and Macropodus opercularis (Anabatidae) were tested for predacious behavior toward immature mosquitoes (Aedes fluviatilis, Diptera:Culicidae) and schistosomiasis snail hosts (Biomphalaria glabrata, Mollusca:Planorbidae), in the presence or absence of non-living food and in laboratory conditions. A. ocellatus, a species indigenous to Brazil, was a very efficient predator of both organisms (alpha = 0.05); M. opercularis, an exotic species, preyed well on immature mosquitoes, but small snails and snail egg-masses were ingested only irregularly. Both fish species seemed to prefer live to non-living food.
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- 1991
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4. Effects of Caffeine Ingestion on Pulmonary V˙O2 Kinetics and Muscle Fatigue During Severe-Intensity Cycling Exercise.
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Estrela RLD, Dos Santos JS, Salvador PCDN, Ventura TP, Oneda G, de Lucas RD, Turnes T, and Guglielmo LGA
- Abstract
Introduction: This study aimed to analyze the effect of caffeine (CAF) intake on pulmonary oxygen uptake (V˙O2) kinetics, muscle fatigue, and physiological and perceptual parameters during severe-intensity cycling exercise., Methods: Twelve physically active men (age: 26 ± 5 years; V˙O2peak: 46.7 ± 7.8 ml·kg-1·min-1) participated of this placebo (PLA)-controlled, randomized, double-blinded, and crossover design study. Participants performed on separate days (a) a ramp incremental test to determine V˙O2peak and gas exchange threshold and (b) four 8-min constant work rate tests at 60% of the difference between gas exchange threshold and maximal V˙O2peak (i.e., Δ60%) 1 hr after taking either 6 mg/kg of body mass of CAF or PLA. Before and immediately after constant work rate tests, a 5-s all-out isokinetic sprint was performed to assess the muscle torque. V˙O2 kinetics, blood lactate concentration ([La]), and rating of perceived exertion were analyzed during constant work rate tests., Results: CAF did not alter the primary time constant of V˙O2 kinetics (PLA: 38.3 ± 14; CAF: 36.7 ± 7.5 s), V˙O2 slow component (PLA: 0.5 ± 0.2; CAF: 0.5 ± 0.2 L/min), or peak torque (PLA: 144.6 ± 18.6; CAF: 143.9 ± 18.7 N·m). CAF decreased rating of perceived exertion (15.9 ± 1.8 vs. 17.0 ± 1.5 a.u.) and increased blood lactate concentration (9.0 ± 2.5 vs. 8.3 ± 2.2 mmol/L; p < .05) after constant work rate tests compared with PLA., Conclusion: CAF ingestion does not alter V˙O2 kinetics or muscle torque production during 8 min of severe-intensity cycling exercise.
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- 2024
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5. Rerouting cardiovascular management following gastric bypass surgery: Dose optimization of carvedilol using population-based analysis.
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Yamamoto PA, Vozmediano V, Cristofoletti R, Jiang J, Schmittgen TD, de Gaitani CM, Kemp R, Sankarankutty AK, Dos Santos JS, Salgado Junior W, and de Moraes NV
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- Humans, Male, Female, Adult, Middle Aged, Multidrug Resistance-Associated Protein 2, Adrenergic beta-Antagonists pharmacokinetics, Adrenergic beta-Antagonists administration & dosage, Dose-Response Relationship, Drug, Biological Availability, Multidrug Resistance-Associated Proteins metabolism, Multidrug Resistance-Associated Proteins genetics, Obesity surgery, Heart Rate drug effects, Administration, Oral, Aged, Carvedilol administration & dosage, Carvedilol pharmacokinetics, Gastric Bypass adverse effects, Models, Biological, Propanolamines pharmacokinetics, Propanolamines administration & dosage, Carbazoles administration & dosage, Carbazoles pharmacokinetics
- Abstract
Aims: A population-based pharmacokinetic (PK) modeling approach (PopPK) was used to investigate the impact of Roux-en-Y gastric bypass (RYGB) on the PK of (R)- and (S)-carvedilol. We aimed to optimize carvedilol dosing for these patients utilizing a pharmacokinetic/pharmacodynamic (PK/PD) link model., Methods: PopPK models were developed utilizing data from 52 subjects, including nonobese, obese, and post- RYGB patients who received rac- carvedilol orally. Covariate analysis included anthropometric and laboratory data, history of RYGB surgery, CYP2D6 and CYP3A4 in vivo activity, and relative intestinal abundance of major drug- metabolizing enzymes and transporters. A direct effect inhibitory E
max pharmacodynamic model was linked to the PK model of (S)- carvedilol to simulate the changes in exercise- induced heart rate., Results: A 2-compartmental model with linear elimination and parallel first-order absorptions best described (S)-carvedilol PK. RYGB led to a twofold reduction in relative oral bioavailability compared to nonoperated subjects, along with delayed absorption of both enantiomers. The intestinal ABCC2 mRNA expression increases the time to reach the maximum plasma concentration. The reduced exposure (AUC) of (S)-carvedilol post-RYGB corresponded to a 33% decrease in the predicted area under the effect curve (AUEC) for the 24-hour β-blocker response. Simulation results suggested that a 50-mg daily dose in post-RYGB patients achieved comparable AUC and AUEC to 25-mg dose in nonoperated subjects., Conclusion: Integrated PK/PD modeling indicated that standard dosage regimens for nonoperated subjects do not provide equivalent β-blocking activity in RYGB patients. This study highlights the importance of personalized dosing strategies to attain desired therapeutic outcomes in this patient cohort., (© 2024 British Pharmacological Society.)- Published
- 2024
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6. Atypical phosphatase DUSP11 inhibition promotes nc886 expression and potentiates gemcitabine-mediated cell death through NF-kB modulation.
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Santos VS, Vieira GM, Ruckert MT, Andrade PV, Nagano LF, Brunaldi MO, Dos Santos JS, and Silveira VS
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- Humans, Apoptosis drug effects, Carcinoma, Pancreatic Ductal drug therapy, Carcinoma, Pancreatic Ductal genetics, Carcinoma, Pancreatic Ductal pathology, Carcinoma, Pancreatic Ductal metabolism, Cell Death drug effects, Cell Line, Tumor, Gene Expression Regulation, Neoplastic drug effects, Mitogen-Activated Protein Kinase Phosphatases metabolism, Mitogen-Activated Protein Kinase Phosphatases genetics, Deoxycytidine analogs & derivatives, Deoxycytidine pharmacology, Dual-Specificity Phosphatases genetics, Dual-Specificity Phosphatases metabolism, Gemcitabine, NF-kappa B metabolism, Pancreatic Neoplasms drug therapy, Pancreatic Neoplasms genetics, Pancreatic Neoplasms metabolism, Pancreatic Neoplasms pathology
- Abstract
Pancreatic ductal adenocarcinoma (PDAC) represents one of the deadliest cancers among all solid tumors. First-line treatment relies on gemcitabine (Gem) and despite treatment improvements, refractoriness remains a universal challenge. Attempts to decipher how feedback-loops control signaling pathways towards drug resistance have gained attention in recent years, particularly focused on the role of phosphatases. In this study, a CRISPR/Cas9-based phenotypic screen was performed to identify members from the dual-specificity phosphatases (DUSP) family potentially acting on Gem response in PDAC cells. The approach revealed the atypical RNA phosphatase DUSP11 as a potential target, whose inhibition creates vulnerability of PDAC cells to Gem. DUSP11 genetic inhibition impaired cell survival and promoted apoptosis, synergistically enhancing Gem cytotoxicity. In silico transcriptome analysis of RNA-seq data from PDAC human samples identified NF-ĸB signaling pathway highly correlated with DUSP11 upregulation. Consistently, Gem-induced NF-ĸB phosphorylation was blocked upon DUSP11 inhibition in vitro. Mechanistically, we found that DUSP11 directly impacts nc886 expression and modulates PKR-NF-ĸB signaling cascade after Gem exposure in PDAC cells resulting in resistance to Gem-induced cell death. In conclusion, this study provides new insights on DUSP11 role in RNA biology and Gem response in PDAC cells., (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)
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- 2024
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7. Extrahepatic cholestasis associated with paracoccidioidomycosis: Challenges in the differential diagnosis of biliopancreatic neoplasia.
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Dos Santos JS, de Moura Arrais V, Rosseto Ferreira WJ, Ribeiro Correa Filho R, Brunaldi MO, Kemp R, Sankanrakutty AK, Elias Junior J, Bellissimo-Rodrigues F, Martinez R, Zangiacomi Martinez E, and Ardengh JC
- Abstract
Background: Paracoccidioidomycosis (PCM) may involve the hepatic pedicle and peripancreatic lymph nodes, cause damage to the bile duct and manifest, exceptionally, in combination with extrahepatic cholestasis (EHC), making investigation and treatment challenging., Aim: To investigate the management of patients with visceral PCM admitted with EHC., Methods: All patients diagnosed with PCM treated in a public, tertiary teaching hospital between 1982 and 2020 were retrospectively evaluated. Those also identified with EHC were allocated to two groups according to the treatment approach for the purpose of comparing clinical, laboratory, and imaging findings, resources used for etiological diagnosis, treatment results, and prognosis. Statistical analyses were performed using the linear mixed-effects model (random and fixed effects), which was adjusted using the PROC MIXED procedure of the SAS
® 9.0 software, and Fisher's exact test., Results: Of 1645 patients diagnosed with PCM, 40 (2.4%) had EHC. Of these, 20 (50.0%) lived in the rural area and 29 (72.5%) were men, with a mean age of 27.1 years (3-65 years). Jaundice as first symptom and weight loss of at least 10 kg were observed in 16 patients (40.0%), and a mass in the head of the pancreas was observed in 8 (20.0%). The etiological diagnosis was made by tissue collection during surgery in 4 cases (10.0%) and by endoscopic methods in 3 cases (7.5%). Twenty-seven patients (67.5%) received drug treatment alone (Group 1), whereas 13 (32.5%) underwent endoscopic and/or surgical procedures in combination with drug treatment (Group 2). EHC was significantly reduced in both groups (40.7% in Group 1, with a mean time of 3 months; and 38.4% in Group 2, with a mean time of 7.5 months), with no statistically significant difference between them. EHC recurrence rates, associated mainly with treatment nonadherence, were similar in both groups: 37% in Group 1 and 15.4% in Group 2. The mortality rate was 18.5% in Group 1 and 23% in Group 2, with survival estimates of 71.3% and 72.5%, respectively, with no statistically significant difference., Conclusion: Although PCM-related EHC is rare, it needs to be included in the differential diagnosis of malignancies, as timely treatment can prevent hepatic and extrahepatic sequelae., Competing Interests: Conflict-of-interest statement: The authors report no conflicts of interest., (©The Author(s) 2024. Published by Baishideng Publishing Group Inc. All rights reserved.)- Published
- 2024
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8. Single-Base Gene Variants in MIR-146A and SCN1A Genes Related to the Epileptogenic Process in Drug-Responsive and Drug-Resistant Temporal Lobe Epilepsy-A Preliminary Study in a Brazilian Cohort Sample.
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Buainain RP, Sodré AR, Dos Santos JS, Takazaki KAG, Queiroz LS, de Oliveira CTP, de Aguiar PHP, Marson FAL, and Ortega MM
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- Humans, Female, Male, Brazil, Adult, Genetic Predisposition to Disease, Drug Resistant Epilepsy genetics, Drug Resistant Epilepsy drug therapy, Middle Aged, Young Adult, Genotype, Cohort Studies, Alleles, Gene Frequency, Adolescent, Case-Control Studies, NAV1.1 Voltage-Gated Sodium Channel genetics, MicroRNAs genetics, Epilepsy, Temporal Lobe genetics, Epilepsy, Temporal Lobe drug therapy, Polymorphism, Single Nucleotide
- Abstract
The drug-resistant temporal lobe epilepsy (TLE) has recently been associated with single nucleotide variants (SNVs) in microRNA(miR)-146a ( MIR-146A ) (rs2910164) and Sodium Voltage-Gated Channel Alpha Subunit 1 ( SCN1A ) (rs2298771 and rs3812718) genes. Moreover, no studies have shown an association between these SNVs and susceptibility to drug-resistant and drug-responsive TLE in Brazil. Thus, deoxyribonucleic acid (DNA) samples from 120 patients with TLE (55 drug-responsive and 65 drug-resistant) were evaluated by real-time polymerase chain reaction (RT-PCR). A total of 1171 healthy blood donor individuals from the Online Archive of Brazilian Mutations (ABraOM, from Portuguese Arquivo Brasileiro On-line de Mutações), a repository containing genomic variants of the Brazilian population, were added as a control population for the studied SNVs. MIR-146A and SCN1A relative expression was performed by quantitative RT-PCR (qRT-PCR). The statistical analysis protocol was performed using an alpha error of 0.05. TLE patient samples and ABraOM control samples were in Hardy-Weinberg equilibrium for all studied SNVs. For rs2910164, the frequencies of the homozygous genotype (CC) (15.00% vs. 9.65%) and C allele (37.80% vs. 29.97%) were superior in patients with TLE compared to controls with a higher risk for TLE disease [odds ratio (OR) = 1.89 (95% confidence interval (95%CI) = 1.06-3.37); OR = 1.38 (95%CI = 1.04-1.82), respectively]. Drug-responsive patients also presented higher frequencies of the CC genotype [21.81% vs. 9.65%; OR = 2.58 (95%CI = 1.25-5.30)] and C allele [39.09% vs. 29.97%; OR = 1.50 (95%CI = 1.01-2.22)] compared to controls. For rs2298771, the frequency of the heterozygous genotype (AG) (51.67% vs. 40.40%) was superior in patients with TLE compared to controls with a higher risk for TLE disease [OR = 2.42 (95%CI = 1.08-5.41)]. Drug-resistant patients presented a higher AG frequency [56.92% vs. 40.40%; OR = 3.36 (95%CI = 1.04-17.30)] compared to the control group. For rs3812718, the prevalence of genotypes and alleles were similar in both studied groups. The MIR-146A relative expression level was lower in drug-resistant compared to drug-responsive patients for GC (1.6 vs. 0.1, p -value = 0.049) and CC (1.8 vs. 0.6, p -value = 0.039). Also, the SCN1A relative expression levels in samples from TLE patients were significantly higher in AG [2.09 vs. 1.10, p -value = 0.038] and GG (3.19 vs. 1.10, p -value < 0.001) compared to the AA genotype. In conclusion, the rs2910164-CC and rs2298771-AG genotypes are exerting significant risk influence, respectively, on responsive disease and resistant disease, probably due to an upregulated nuclear factor kappa B (NF-kB) and SCN1A loss of function.
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- 2024
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9. The Frequency of Anatomical Variants of the Bile Ducts: A Review Based on a Single Classification as Support for Cholangiographic Examinations.
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Olmedo NB, Dos Santos JS, and Junior JE
- Abstract
Complications arising from hepatobiliary surgery can have adverse effects on both the quality of life and the survival of patients. Magnetic resonance cholangiography (MRC) techniques are highly effective at revealing anatomical variants of the bile ducts and thus play a vital role in minimizing the occurrence of complications. The aims of this review are threefold: to ascertain the classifications utilized for categorizing anatomical variants of the bile ducts, to present the reported results on the prevalence of these anatomical variants, and to explore the diagnostic modalities employed to visualize these anatomical variants and associated complications during surgical procedures. A review of the literature was carried out using the Cochrane Library database and the PubMed, Medical Literature Analysis and Retrieval System Online (MEDLINE), and Google Scholar platforms. We conducted a comprehensive review of relevant studies to categorize the different anatomical variants according to the Huang classification. According to the Huang classification, our study showed type A1, 60.44%; type A2, 11.76%; type A3, 11.73%; type A4, 5.47%; type A5, 0.26%; and type B, which was identified in insignificant numbers (0.16%) or does not appear; additionally, variants that do not fit into the Huang classification have also been identified (10.18%). The Huang classification serves as an invaluable presurgical guide, aiding in the strategic planning of biliary interventions and effectively reducing the risk of iatrogenic complications, morbidity, mortality, and postoperative length of stay. MRC is still considered the noninvasive gold standard method for evaluating the bile ducts and their anatomical variations., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Olmedo et al.)
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- 2024
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10. Clinical usefulness of tissue acquisition of pancreatic cystic lesions using an endoscopic ultrasound-guided needle for histological analysis.
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Castro JSL, Taglieri E, Neto OM, Guerra JG, Venco FE, Andrade E, Seraphim AM, Romanini SG, Torres IT, Serrano JPR, Goldman SM, Kemp R, Dos Santos JS, and Ardengh JC
- Abstract
Background and study aims There are rare data on the usefulness of endosonography-guided tissue acquisition (EUS-TA) in patients with pancreatic cystic lesions (PCLs). This study aimed to determine the accuracy of EUS-TA with ProCore 20G (PC20) for differentiating between mucinous neoplasia (MN) and non-MNs (n-MN) and identifying malignant PCLs, as well as its adverse events (AEs) in patients with PCLs without a classificatory diagnosis by imaging exams. Patients and methods In this observational, retrospective, single-center study, all patients with PCL who underwent EUS-TA due to diagnostic doubts in imaging studies were consecutively recruited from June 2017 to December 2021. The outcomes were to determine the diagnostic accuracy of EUS-TA with PC20 for differentiating between MN and n-MN, identifying malignant PCLs, and the AEs. Results Herein, 145 patients underwent EUS-TA, with 83 women (57.2%) and a mean age of 62.2 years. The mean size was 2.3 cm, with 81 patients (77.9%) having a PCL < 3.0 cm. The final diagnosis was made by EUS-TA (n = 81), surgery (n = 58), and follow-up (n = 6). The sensitivity, specificity, positive and negative predictive values, and accuracy for differentiating between MNs and n-MNs and identifying malignant PCLs were 92.6%, 98.4%, 98.7%, 91.3%, and 95.2% (kappa=0.9), and 92%, 99.2%, 95.8%, 98.3%, and 97.9% (kappa = 0.93), respectively. The AE rate was 2.7%, with no deaths in this cohort. Conclusions EUS-TA with PC20 has high accuracy and technical success with a low AE rate for PCL diagnosis., Competing Interests: Conflict of Interest The authors declare that they have no conflict of interest., (The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial-License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. (https://creativecommons.org/licenses/by-nc-nd/4.0/).)
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- 2024
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11. mRNA Expression and Methylation of the RAD51 , ATM , ATR , BRCA1 , and BRCA2 Genes in Gastric Adenocarcinoma.
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Pádua JDB, Mariano CFA, Fabro AT, Lizarte Neto FS, Zuliani RL, Sares CTG, Dos Santos JS, Sankarankutty AK, Tirapelli DPDC, Silveira VDS, de Molfetta GA, Júnior WADS, and Brunaldi MO
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Background: Immunohistochemical prognostic significance of the homologous recombination-related proteins RAD51, ATM, BRCA1, and BRCA2 is known in gastric adenocarcinoma, one of the deadliest cancers., Objective and Design: This retrospective cohort study aimed to evaluate mRNA expression and promoter methylation of some homologous recombination-related genes in this neoplasm., Methods: We evaluated mRNA expression and methylation of RAD51 , ATM , ATR , BRCA1 , and BRCA2 in tumor and non-tumor frozen samples from gastrectomy specimens by RT-qPCR and MS-HRM, correlating our results with previous immunohistochemistry data and prognostic features., Results: RAD51 , ATR , BRCA1 , BRCA2 , and ATM mRNA expression was detected in 93.75% (45/48), 93.75% (45/48), 91.67% (44/48), 83.33% (40/48), and 89.58% (43/48) of the tumors; partial or complete methylation, in 94.87% (37/39), 0 (0/42), 97.56% (40/41), 100% (41/41), and 0 (0/40), respectively. Most gene pairs showed significant weak to moderate positive correlations of tumoral mRNA expression with each other: RAD51 with ATR ( P = .027), BRCA1 ( P < .001), and BRCA2 ( P < .001); ATR with BRCA1 ( P = .007), and ATM ( P = .001); BRCA1 with BRCA2 ( P = 0.001). BRCA1 mRNA was reduced in tumors compared with non-neoplastic mucosa (0.345 vs 1.272, P = .015) and, excluding neoadjuvant therapy cases, in T3 to T4 tumors compared with T2 (0.414 vs 0.954, P = .035). Greater tumoral RAD51 mRNA levels correlated with perineural invasion (1.822 vs 0.725, P = .010) and death (1.664 vs 0.929, P = .036), but not with survival time. There was an inverse association between nuclear immunohistochemical positivity for ATR and its mRNA levels (0.487 vs 0.907, P = .032), and no significant correlation for the other markers., Conclusions: Our results suggest RAD51 , BRCA1 , and BRCA2 methylation as a frequent epigenetic mechanism in gastric cancer, support the hypothesis that reduced BRCA1 expression participates in disease progression, and show an association between RAD51 mRNA and perineural invasion and mortality that may be considered unexpected, considering the former immunohistochemical studies. The lack of correlation between immunohistochemistry and mRNA, and even the inverse association, for ATR , can be seen as indicative of action of post-transcriptional or post-translational regulatory mechanisms, to be better investigated., Competing Interests: The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article., (© The Author(s) 2024.)
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- 2024
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12. The Safety and Cost Analysis of Outpatient Laparoendoscopy in the Treatment of Cholecystocholedocholithiasis: A Retrospective Study.
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Dos Santos JS, Kemp R, Orquera AGM, Gaspar AF, Júnior JRL, Queiroz LTA, Avezum VAPAF, Ardengh JC, Sankarankutty AK, and Lima LS
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Introduction: The advantages of single-stage treatment of cholecystocholedocholithiasis are well established, but the conditions for carrying out treatment on an outpatient basis require a review of concepts and practices of medical corporations., Objective: To evaluate the practice of treating cholecystocholedocholithiasis by laparoendoscopy on an outpatient basis with cost analysis., Method: A retrospective study was conducted on patients with cholecystocholedocholithiasis treated by combined laparoscopic cholecystectomy and endoscopic choledocholithotomy from January 2015 to January 2019. After collecting data from physical and digital medical records, the patients were divided into two groups-AR ( n = 42)-ambulatory regimen and HR ( n = 28)-hospitalization regimen-which were compared in terms of demographic, clinical and treatment variables and their results, as well as in terms of costs., Results: The mean age of the AR group was lower than that of the HR group and the physical status of the AR patients was better when assessed according to the American Society of Anesthesiologists (ASA) ( p = 0.01). There was no difference between groups regarding the risk of choledocholithiasis ( p = 0.99). For the AR group, the length of stay was shorter: 11.29 h × 65.21 h ( p = 0.02), as was the incidence of postoperative complications assessed by applying the Clavien-Dindo classification: 3 (7.1%) × 11 (39.2%) ( p < 0.01). The total mean costs were higher for the HR group (USD 2489.93) than the AR group (USD 1650.98) ( p = 0.02)., Conclusion: Outpatient treatment of cholecystocholedocholithiasis by laparoendoscopy is safe and viable for most cases, has a lower cost and can support the reorientation of training and practice of hepatobiliary surgeons.
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- 2024
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13. Hydrogel properties of non-conventional starches from guabiju, pinhão, and uvaia seeds.
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Dos Santos JS, Biduski B, Colussi R, Pinto VZ, and Dos Santos LR
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- Amylose analysis, Seeds chemistry, Water chemistry, Hydrogels, Starch chemistry
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The physicochemical properties of starch vary depending on the botanical sources, thereby influencing the gelatinisation/retrogradation properties and subsequently affecting the hydrogels characteristics. This study aimed to assess the influence of botanical sources influence on starch and hydrogel properties using non-conventional starch derived from guabiju, pinhão, and uvaia seeds. Hydrogels were prepared by starch gelatinisation followed by 6 h ageing period at room temperature (20 ± 2 °C) and subjected to five freeze-thaw cycles. Pinhão starch exhibited a higher viscosity peak and breakdown, along with a lower final viscosity and setback, compared to guabiju and uvaia starches. The significantly different pasting properties influenced the porous microstructure, water absorption (p-value: 0.01), and resistance of the hydrogels (p-value: 0.01). The guabiju starch hydrogels showed a uniform pore structure without cavities, whereas pinhão and uvaia starch hydrogels exhibited agglomerated and spongy pore structures. Furthermore, the guabiju starch hydrogel demonstrated the lowest water absorption (4.56 g/g) and the highest compression resistance (1448.50 g) among all the studied starch hydrogels. In contrast, the pinhão starch hydrogel showed the highest water absorption (7.43 g/; p-value: 0.01) among all studied starch hydrogels. The hardness of uvaia starch hydrogel did not differ significantly from the guabiju and pinhão starch hydrogel. The different non-conventional starches reveal important variations in the hydrogels characteristics. This provides insights into how amylose and amylopectin interact and present alternatives for using these unique starch-based hydrogels in diverse applications., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
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- 2023
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14. Pure Cut or Endocut for Biliary Sphincterotomy? A Multicenter Randomized Clinical Trial.
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Pereira Funari M, Ottoboni Brunaldi V, Mendonça Proença I, Aniz Gomes PV, Almeida Queiroz LT, Zamban Vieira Y, Eiji Matuguma S, Ide E, Prince Franzini TA, Lera Dos Santos ME, Cheng S, Kazuyoshi Minata M, Dos Santos JS, Turiani Hourneaux de Moura D, Kemp R, and Guimarães Hourneaux de Moura E
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- Humans, Acute Disease, Cholangiopancreatography, Endoscopic Retrograde adverse effects, Catheterization adverse effects, Risk Factors, Sphincterotomy, Endoscopic adverse effects, Pancreatitis epidemiology, Pancreatitis etiology, Pancreatitis prevention & control
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Introduction: Adverse events (AE) after endoscopic retrograde cholangiopancreatography (ERCP) are not uncommon and post-ERCP acute pancreatitis (PEP) is the most important one. Thermal injury from biliary sphincterotomy may play an important role and trigger PEP or bleeding. Therefore, this study evaluated the outcomes of 2 electric current modes used during biliary sphincterotomy., Methods: From October 2019 to August 2021, consecutive patients with native papilla undergoing ERCP with biliary sphincterotomy were randomized to either the pure cut or endocut after cannulation. The primary outcome was PEP incidence. Secondary outcomes included intraprocedural and delayed bleeding, infection, and perforation., Results: A total of 550 patients were randomized (272 pure cut and 278 endocut). The overall PEP rate was 4.0% and significantly higher in the endocut group (5.8% vs 2.2%, P = 0.034). Univariate analysis revealed >5 attempts ( P = 0.004) and endocut mode ( P = 0.034) as risk factors for PEP. Multivariate analysis revealed >5 attempts ( P = 0.005) and a trend for endocut mode as risk factors for PEP ( P = 0.052). Intraprocedural bleeding occurred more often with pure cut ( P = 0.018), but all cases were controlled endoscopically during the ERCP. Delayed bleeding was more frequent with endocut ( P = 0.047). There was no difference in perforation ( P = 1.0) or infection ( P = 0.4999) between the groups., Discussion: Endocut mode may increase thermal injury leading to higher rates of PEP and delayed bleeding, whereas pure cut is associated with increased intraprocedural bleeding without clinical repercussion. The electric current mode is not related to perforation or infection. Further RCT assessing the impact of electric current on AE with overlapping preventive measures such as rectal nonsteroidal anti-inflammatory drugs and hyperhydration are needed. The study was submitted to the Brazilian Clinical Trials Platform ( http://www.ensaiosclinicos.gov.br ) under the registry number RBR-5d27tn., (Copyright © 2023 by The American College of Gastroenterology.)
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- 2023
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15. Estrogen Deficiency Impairs Osseointegration in Hypertensive Rats Even Treated with Alendronate Coated on the Implant Surface.
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Mulinari-Santos G, Dos Santos JS, Kitagawa IL, de Souza Batista FR, Botacin PR, Antoniali C, Lisboa-Filho PN, and Okamoto R
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Hypertension and estrogen deficiency can affect bone metabolism and therefore increase the risk of osseointegration. Antihypertensive drugs such as losartan not only control blood pressure but also enhance bone healing. In addition, alendronate sodium is widely used to treat postmenopausal osteoporosis. Hence, we evaluated the effect of systemic antihypertensive and local alendronate coted on implants on osseointegration under hypertensive and estrogen-deficiency conditions. A total of 64 spontaneously hypertensive rats (SHRs) treated with losartan were randomly divided according to the estrogen-deficiency induction by ovariectomy (OVX) or not (SHAM), and whether the implant surface was coated with sodium alendronate (ALE) or not, resulting in four groups: SHR SHAM, SHR SHAM ALE, SHR OVX, and SHR OVX ALE. The removal torque, microcomputed tomography, and epifluorescence microscopy were the adopted analyses. The hypertensive and estrogen-deficiency animals presented a lower removal torque even when treated with alendronate on implant surface. The microcomputed tomography revealed a higher bone volume and bone-to-implant contact in the SHRs than the SHR OVX rats. Epifluorescence showed a decreased mineral apposition ratio in the SHR OVX ALE group. The data presented indicate that estrogen deficiency impairs osseointegration in hypertensive rats; in addition, alendronate coated on the implant surface does not fully reverse this impaired condition caused by estrogen deficiency.
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- 2023
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16. Antilisterial activity of cinnamon essential oil, pomegranate extract, or strawberry tree extract against Listeria monocytogenes in slices of dry-cured ham and pork loin.
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Dos Santos LR, Alía A, Martin I, Freitas CP, Rodrigues LB, Dos Santos JS, Borges KA, Furian TQ, and Córdoba JJ
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Owing to concerns about the antimicrobial resistance of agents that can prevent the growth of Listeria monocytogenes in meat, researchers have investigated natural preservatives with antilisterial effects. However, in vivo application of essential oils and plant extracts usually results in reduced antimicrobial activity in meat products when compared to in vitro studies. This study aimed to evaluate the in vivo antimicrobial activity of cinnamon essential oil, pomegranate, and strawberry tree extracts in slices of dry-cured ham and pork loin against L. monocytogenes . Fragments of sterile dry-cured ham were inoculated with 100 μL cinnamon oil 0.5%, pomegranate, or strawberry crude extract. After 10 min, 100 μL of L. monocytogenes serotype 4b (10
4 colony-forming unit [CFU]/mL) was inoculated, and samples were incubated at 7 °C for 7 d to simulate the processing and storage temperature conditions of dry-cured meat products. L. monocytogenes was detected and quantified. Only strawberry extract presented significant differences ( P < 0.05) from the control; thus, it was selected for the assay with 2% and 4% salt-treated pork loin. The strawberry tree extract significantly ( P < 0.05) reduced the growth of L. monocytogenes in dry-cured ham. However, it could not reduce L. monocytogenes growth in pork loin, regardless of the salt concentration. This is the first report on the antimicrobial effect of strawberry tree leaf extract against L. monocytogenes in dry-cured ham., Competing Interests: DECLARATION OF CONFLICTING INTERESTSThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.- Published
- 2023
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17. Kaempferol and Biomodified Kaempferol from Sophora japonica Extract as Potential Sources of Anti-Cancer Polyphenolics against High Grade Glioma Cell Lines.
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Dos Santos JS, Suzan AJ, Bonafé GA, Fernandes AMAP, Longato GB, Antônio MA, Carvalho PO, and Ortega MM
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- Humans, NF-kappa B metabolism, Kaempferols pharmacology, Cell Line, Tumor, Apoptosis, Cell Proliferation, Cell Movement, Sophora japonica, Glioma metabolism
- Abstract
The enzymatic hydrolysis of the extract of Sophora japonica by two glycosyl hydrolases (hesperidinase and galactosidase) was performed in order to obtain kaempferol (KPF)-enriched extract with an enhanced anticancer activity. The current study examined the effectiveness of both Sophora japonica extracts (before (KPF-BBR) and after (KPF-ABR) bioconversion reactions) in reducing cell viability and inducing apoptosis in human high-degree gliomas in vitro. Cytotoxicity was determined using an MTT assay. The effects of both compounds on the proliferation of glioma cell lines were measured using trypan blue exclusion, flow cytometry for cell cycle, wound healing (WH), and neurosphere formation assays. Cellular apoptosis was detected by DNA fragmentation and phosphatidylserine exposure. qPCR and luciferase assays evaluated NF-kB pathway inhibition. The survival rate of NG-97 and U-251 cells significantly decreased in a time- and dose-dependent manner after the addition of KPF-BBR or KPF-ABR. Thus, a 50% reduction was observed in NG-97 cells at 800 µM (KPF-BBR) and 600 µM (KPF-ABR) after 72 h. Both compounds presented an IC50 of 1800 µM for U251 after 72 h. The above IC50 values were used in all of the following analyses. Neither of the KPF presented significant inhibitory effects on the non-tumoral cells (HDFa). However, after 24 h, both extracts (KPF-BBR and KPF-ABR) significantly inhibited the migration and proliferation of NG-97 and U-251 cells. In addition, MMP-9 was downregulated in glioma cells stimulated by 12-O-tetradecanoylphorbol-13-acetate (TPA) plus KPF-BBR and TPA+KPF-ABR compared with the TPA-treated cells. Both KPF-BBR and KPF-ABR significantly inhibited the proliferation of glioma stem cells (neurospheres) after 24 h. DNA fragmentation assays demonstrated that the apoptotic ratio of KPF-ABR-treated cell lines was significantly higher than in the control groups, especially NG-97, which is not TMZ resistant. In fact, the flow cytometric analysis indicated that KPF-BBR and KPF-ABR induced significant apoptosis in both glioma cells. In addition, both KPF induced S and G2/M cell cycle arrest in the U251 cells. The qPCR and luciferase assays showed that both KPFs downregulated TRAF6 , IRAK2, IL-1β, and TNF-α , indicating an inhibitory effect on the NF-kB pathway. Our findings suggest that both KPF-BBR and KPF-ABR can confer anti-tumoral effects on human cell glioma cells by inhibiting proliferation and inducing apoptosis, which is related to the NF-κB-mediated pathway. The KPF-enriched extract (KPF-ABR) showed an increased inhibitory effect on the cell migration and invasion, characterizing it as the best antitumor candidate.
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- 2023
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18. Clinical Validation of a Colorimetric Loop-Mediated Isothermal Amplification Using a Portable Device for the Rapid Detection of SARS-CoV-2.
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Raddatz BW, Rabello FJ, Benedetti R, Steil GJ, Imamura LM, Kim EYS, Santiago EB, Hartmann LF, Predebon JV, Delfino BM, Nogueira MB, Dos Santos JS, da Silva BG, Nicollete DRP, Almeida BMM, Rogal SR Jr, and Figueredo MVM
- Abstract
Quick and reliable mass testing of infected people is an effective tool for the contingency of SARS-CoV-2. During the COVID-19 pandemic, Point-of-Care (POC) tests using Loop-Mediated Isothermal Amplification (LAMP) arose as a useful diagnostic tool. LAMP tests are a robust and fast alternative to Polymerase Chain Reaction (PCR), and their isothermal property allows easy incorporation into POC platforms. The main drawback of using colorimetric LAMP is the reported short-term stability of the pre-mixed reagents, as well as the relatively high rate of false-positive results. Also, low-magnitude amplification can produce a subtle color change, making it difficult to discern a positive reaction. This paper presents Hilab Molecular, a portable device that uses the Internet of Things and Artificial Intelligence to pre-analyze colorimetric data. In addition, we established manufacturing procedures to increase the stability of colorimetric RT-LAMP tests. We show that ready-to-use reactions can be stored for up to 120 days at -20 °C. Furthermore, we validated both the Hilab Molecular device and the Hilab RT-LAMP test for SARS-CoV-2 using 581 patient samples without any purification steps. We achieved a sensitivity of 92.93% and specificity of 99.42% (samples with CT ≤ 30) when compared to RT-qPCR.
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- 2023
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19. NEOTROPICAL FRESHWATER FISHES: A dataset of occurrence and abundance of freshwater fishes in the Neotropics.
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Tonella LH, Ruaro R, Daga VS, Garcia DAZ, Vitorino OB Júnior, Lobato-de Magalhães T, Dos Reis RE, Di Dario F, Petry AC, Mincarone MM, de Assis Montag LF, Pompeu PS, Teixeira AAM, Carmassi AL, Sánchez AJ, Giraldo Pérez A, Bono A, Datovo A, Flecker AS, Sanches A, Godinho AL, Matthiensen A, Peressin A, Hilsdorf AWS, Barufatti A, Hirschmann A, Jung A, Cruz-Ramírez AK, Braga Silva A, Cunico AM, Saldanha Barbosa A, de Castro Barradas A, Rêgo ACL, Franco ACS, Costa APL, Vidotto-Magnoni AP, Ferreira A, Kassner Filho A, Nobile AB, Magalhães ALB, da Silva AT, Bialetzki A, Dos Santos Maroclo Gomes AC, Nobre AB, Casimiro ACR, Angulo Sibaja A, Dos Santos AAC, de Araújo ÁR, Frota A, Quirino BA, Ferreira BM, Albuquerque BW, Meneses BA, Oliveira BT, Torres Parahyba Campos BA, Gonçalves BB, Kubiak BB, da Silveira Prudente B, de Araujo Passos Pacheco BG, Nakagawa BK, do Nascimento BTM, Maia C, Cantagallo Devids C, Rezende CF, Muñoz-Mendoza C, Peres CA, de Sousa Rodrigues Filho CA, de Lucena CAS, Fernandes CA, Kasper CB, Donascimiento C, Emidio C Júnior, Carrillo-Moreno C, Machado C, Pera C, Hartmann C, Pringle CM, Leal CG, Jézéquel C, Harrod C, da Rosa CA, Quezada-Romegialli C, Pott CM, Larentis C, Nascimento CAS, da Silva Gonçalves C, da Cunha CJ, Pisicchio CM, de Carvalho DC, Galiano D, Gomez-Uchida D, Santana DO, Salas Johnson D, Petsch DK, de Freitas DTH, Bailly D, Machado DF, de Carvalho DR, Topan DH, Cañas-Rojas D, da Silva D, Freitas-Souza D, Lima-Júnior DP, Piscor D, Moraes DP, Viana D, Caetano DLF, Gubiani ÉA, Okada EK, do Amaral EC, Brambilla EM, Cunha ER, Kashiwaqui EAL, Rocha EA, Barp EA, da Costa Fraga E, D'Bastiani E, Zandonà E, Dary EP, Benedito E, Barba-Macías E, Calvache Uvidia EV, Fonseca FL, Ferreira FS, Lima F, Maffei F, Porto-Foresti F, Teresa FB, de Andrade Frehse F, Oliveira FJM, da Silva FP, de Lima FP, do Prado FD, Jerep FC, Vieira FEG, Gertum Becker F, de Carvalho FR, Ubaid FK, Teixeira FK, Provenzano Rizzi F, Severo-Neto F, Villamarín F, de Mello FT, Keppeler FW, de Avila Batista G, de Menezes Yazbeck G, Tesitore G, Salvador GN, Soteroruda Brito GJ, Carmassi GR, Kurchevski G, Goyenola G, Pereira HR, Alvez HJFS, do Prado HA, Pinho HLL, Sousa HL, Bornatowski H, de Oliveira Barbosa H, Tobes I, de Paiva Affonso I, Queiroz IR, Vila I, Negrete IVJ, Prado IG, Vitule JRS, Figueiredo-Filho J, Gonzalez JA, de Faria Falcão JC, Teixeira JV, Pincheira-Ulbrich J, da Silva JC, de Araujo Filho JA, da Silva JFM, Genova JG, Giovanelli JGR, Andriola JVP, Alves J, Valdiviezo-Rivera J, Brito J, Botero JIS, Liotta J, Ramirez JL, Marinho JR, Birindelli JLO, Novaes JLC, Hawes JE, Ribolli J, Rivadeneira JF, Schmitter-Soto JJ, Assis JC, da Silva JP, Dos Santos JS, Wingert J, Wojciechowski J, Bogoni JA, Ferrer J, Solórzano JCJ, Sá-Oliveira JC, Vaini JO, Contreras Palma K, Orlandi Bonato K, de Lima Pereira KD, Dos Santos Sousa K, Borja-Acosta KG, Carneiro L, Faria L, de Oliveira LB, Resende LC, da Silva Ingenito LF, Oliveira Silva L, Rodrigues LN, Guarderas-Flores L, Martins L, Tonini L, Braga LTMD, Gomes LC, de Fries L, da Silva LG, Jarduli LR, Lima LB, Gomes Fischer L, Wolff LL, Dos Santos LN, Bezerra LAV, Sarmento Soares LM, Manna LR, Duboc LF, Dos Santos Ribas LG, Malabarba LR, Brito MFG, Braga MR, de Almeida MS, Sily MC, Barros MC, do Nascimento MHS, de Souza Delapieve ML, Piedade MTF, Tagliaferro M, de Pinna MCC, Yánez-Muñoz MH, Orsi ML, da Rosa MF, Bastiani M, Stefani MS, Buenaño-Carriel M, Moreno MEV, de Carvalho MM, Kütter MT, Freitas MO, Cañas-Merino M, Cetra M, Herrera-Madrid M, Petrucio MM, Galetti M, Salcedo MÁ, Pascual M, Ribeiro MC, Abelha MCF, da Silva MA, de Araujo MP, Dias MS, Guimaraes Sales N, Benone NL, Sartor N, Fontoura NF, de Souza Trigueiro NS, Álvarez-Pliego N, Shibatta OA, Tedesco PA, Lehmann Albornoz PC, Santos PHF, Freitas PV, Fagundes PC, de Freitas PD, Mena-Valenzuela P, Tufiño P, Catelani PA, Peixoto P, Ilha P, de Aquino PPU, Gerhard P, Carvalho PH, Jiménez-Prado P, Galetti PM Jr, Borges PP, Nitschke PP, Manoel PS, Bernardes Perônico P, Soares PT, Piana PA, de Oliveira Cunha P, Plesley P, de Souza RCR, Rosa RR, El-Sabaawi RW, Rodrigues RR, Covain R, Loures RC, Braga RR, Ré R, Bigorne R, Cassemiro Biagioni R, Silvano RAM, Dala-Corte RB, Martins RT, Rosa R, Sartorello R, de Almeida Nobre R, Bassar RD, Gurgel-Lourenço RC, Pinheiro RFM, Carneiro RL, Florido R, Mazzoni R, Silva-Santos R, de Paula Santos R, Delariva RL, Hartz SM, Brosse S, Althoff SL, Nóbrega Marinho Furtado S, Lima-Junior SE, Lustosa Costa SY, Arrolho S, Auer SK, Bellay S, de Fátima Ramos Guimarães T, Francisco TM, Mantovano T, Gomes T, Ramos TPA, de Assis Volpi T, Emiliano TM, Barbosa TAP, Balbi TJ, da Silva Campos TN, Silva TT, Occhi TVT, Garcia TO, da Silva Freitas TM, Begot TO, da Silveira TLR, Lopes U, Schulz UH, Fagundes V, da Silva VFB, Azevedo-Santos VM, Ribeiro V, Tibúrcio VG, de Almeida VLL, Isaac-Nahum VJ, Abilhoa V, Campos VF, Kütter VT, de Mello Cionek V, Prodocimo V, Vicentin W, Martins WP, de Moraes Pires WM, da Graça WJ, Smith WS, Dáttilo W, Aguirre Maldonado WE, de Carvalho Rocha YGP, Súarez YR, and de Lucena ZMS
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- Animals, Ecosystem, Mexico, Caribbean Region, Biodiversity, Fishes, Fresh Water
- Abstract
The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large-scale Neotropical freshwater fish inventory, covering the entire Neotropical region from Mexico and the Caribbean in the north to the southern limits in Argentina, Paraguay, Chile, and Uruguay. We compiled 185,787 distribution records, with unique georeferenced coordinates, for the 4225 species, represented by occurrence and abundance data. The number of species for the most numerous orders are as follows: Characiformes (1289), Siluriformes (1384), Cichliformes (354), Cyprinodontiformes (245), and Gymnotiformes (135). The most recorded species was the characid Astyanax fasciatus (4696 records). We registered 116,802 distribution records for native species, compared to 1802 distribution records for nonnative species. The main aim of the NEOTROPICAL FRESHWATER FISHES data set was to make these occurrence and abundance data accessible for international researchers to develop ecological and macroecological studies, from local to regional scales, with focal fish species, families, or orders. We anticipate that the NEOTROPICAL FRESHWATER FISHES data set will be valuable for studies on a wide range of ecological processes, such as trophic cascades, fishery pressure, the effects of habitat loss and fragmentation, and the impacts of species invasion and climate change. There are no copyright restrictions on the data, and please cite this data paper when using the data in publications., (© 2022 The Ecological Society of America.)
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- 2023
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20. Evaluating Single-Nucleotide Variants in MicroRNA Targeting Sites and Mature MicroRNA In Vitro Cell Culture by Luciferase Reporter Gene Assays.
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Dos Santos JS, Bonafé GA, Lourenço GJ, and Ortega MM
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- Genes, Reporter, Biological Assay, Cell Culture Techniques, 3' Untranslated Regions genetics, Nucleotides, MicroRNAs genetics
- Abstract
MicroRNAs (miRs) are small non-coding RNAs of 21-24 nucleotides in length that modulate gene expression by targeting the untranslated region (UTR) of mRNA. Single-nucleotide variants (SNVs) in primary miRs (pri-miRs), precursor miRs (pre-miRs), promoters of pri-miRs, and seed regions can affect miR stability or processing, may influence mature miR expression, and can affect target gene identification, respectively. The present protocol tests the binding and activity of miRs on 3'-UTR target sequences based on the expression of luciferase as a reporter gene fused to the UTR sequence in the presence of plasmids containing pre-miR of interest to test in vitro cell culture assay., (© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2023
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21. Endosonography-Guided Tissue Acquisition for Diagnosis of Squamous Carcinoma of the Pancreas: A Report of Three Cases.
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Ardengh JC, Micelli-Neto O, Kemp R, and Dos Santos JS
- Abstract
While approximately 85% of neoplasms are ductal pancreatic adenocarcinomas (DPA), adenosquamous pancreatic carcinoma (APC) is a rare subtype of pancreatic cancer that exhibits aggressive behavior and poor prognosis. The authors report three cases of primary APC diagnosed through endoscopic ultrasound-guided tissue acquisition (EUS-TA) using the new ProCore 20G needle, which had been developed to improve fine-needle aspiration results by providing more tissue for histopathology. Given its ability for microcore retrieval, pancreatic stroma examination, and excellent histopathology results, EUS-TA has exhibited exceptional diagnostic yield among patients with solid pancreatic lesions. All three APC cases presented herein had been accurately diagnosed using immunohistochemistry after microcore acquisition., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2022, Ardengh et al.)
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- 2022
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22. Influence of high altitude on the expression of HIF-1 and on the prognosis of Ecuadorian patients with gastric adenocarcinoma.
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Barrera EC, Martinez EZ, Brunaldi MO, Donadi EA, Sankarankutty AK, Kemp R, and Dos Santos JS
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- Ecuador epidemiology, Humans, Hypoxia-Inducible Factor 1, Hypoxia-Inducible Factor 1, alpha Subunit, Prognosis, Retrospective Studies, Adenocarcinoma pathology, Altitude, Stomach Neoplasms pathology
- Abstract
Since the incidence of gastric adenocarcinoma (GA) is high in populations living at high altitudes, we evaluated the influence of altitude on the expression of HIF-1 and survival of Ecuadorian GA patients., Method: 155 GA cases were studied: 56 from coastal (GAC) and 99 from mountainous regions (GAM), and 74 non-GA controls (25 coast and 49 mountain). The expression of HIF-1/HER2 was analyzed by immunohistochemistry. Analyses were performed using Fisher's exact and Breslow-Day tests for homogeneity and Kaplan-Meier curves and restricted median survival time ΔRMST., Results: HIF-1 was overexpressed in normal/inflamed gastric mucosa, especially in mountainous non-GA patients ( p = 0.001). There was no difference between GAC and GAM in terms of age/gender, HIF-1/HER2 expression, stage/tumor location. Median survival at 120 months was significantly higher among GAC, with a difference (ΔRMST) of 43.7 months (95% CI 29.5, 57.8) ( p < 0.001) and those with positive HIF-1 expression: ΔRMST 26.6 months (95% CI 11.0, 42.1) ( p < 0.001). Positive HIF-1 expression was associated with better GAM survival, with ΔRMST 33.6 months (95% CI 14.2, 52.9) ( p < 0.001)., Conclusion: Despite the limitations of this retrospective study, GA patients in the coastal region and those who expressed HIF-1 exhibited a better prognosis, but this factor was associated with better survival only in the mountain region., Competing Interests: CONFLICTS OF INTEREST Authors have no conflicts of interest to declare., (Copyright: © 2022 Barrera et al.)
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- 2022
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23. Intradermal Immunization of SARS-CoV-2 Original Strain Trimeric Spike Protein Associated to CpG and AddaS03 Adjuvants, but Not MPL, Provide Strong Humoral and Cellular Response in Mice.
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Firmino-Cruz L, Dos-Santos JS, da Fonseca-Martins AM, Oliveira-Maciel D, Guadagnini-Perez G, Roncaglia-Pereira VA, Dumard CH, Guedes-da-Silva FH, Vicente Santos AC, Alvim RGF, Lima TM, Marsili FF, Abreu DPB, Rossi-Bergmann B, Vale AM, Filardy AD, Silva JL, de Oliveira AC, Gomes AMO, and de Matos Guedes HL
- Abstract
Despite the intramuscular route being the most used vaccination strategy against SARS-CoV-2, the intradermal route has been studied around the globe as a strong candidate for immunization against SARS-CoV-2. Adjuvants have shown to be essential vaccine components that are capable of driving robust immune responses and increasing the vaccination efficacy. In this work, our group aimed to develop a vaccination strategy for SARS-CoV-2 using a trimeric spike protein, by testing the best route with formulations containing the adjuvants AddaS03, CpG, MPL, Alum, or a combination of two of them. Our results showed that formulations that were made with AddaS03 or CpG alone or AddaS03 combined with CpG were able to induce high levels of IgG, IgG1, and IgG2a; high titers of neutralizing antibodies against SARS-CoV-2 original strain; and also induced high hypersensitivity during the challenge with Spike protein and a high level of IFN-γ producing CD4
+ T-cells in mice. Altogether, those data indicate that AddaS03, CpG, or both combined may be used as adjuvants in vaccines for COVID-19.- Published
- 2022
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24. Anti-Migratory Effect of Dipotassium Glycyrrhizinate on Glioblastoma Cell Lines: Microarray Data for the Identification of Key MicroRNA Signatures.
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Bonafé GA, Dos Santos JS, Fernandes AMAP, Ziegler JV, Marson FAL, Rocha T, Carvalho PO, and Ortega MM
- Abstract
The nuclear factor kappa B (NF-κB) pathway has been reported to be responsible for the aggressive disease phenomenon observed in glioblastoma (GBM). Dipotassium glycyrrhizinate (DPG), a dipotassium salt of glycyrrhizic acid isolated from licorice, has recently demonstrated an anti-tumoral effect on GBM cell lines U87MG and T98G through NF-κB suppression by IRAK2 - and TRAF6 -mediating microRNA (miR)-16 and miR-146a, respectively. Thus, the present study aimed to evaluate the expression profiles of miRNAs related to NF-κB suppression in T98G GBM cell line after DPG exposure using miRNA microarray (Affymetrix Human miRNA 4.0A), considering only predicted miRNAs as NF-κB regulator genes. Additional assays using U251 and U138MG cells were performed to validate the array results. DPG cytotoxicity was determined by (4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide assay, and cellular apoptosis was quantified by DNA fragmentation and terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assay. The anti-proliferative effect was observed by cell proliferation and wound-healing assays, and the sphere formation assay examined whether DPG reduced stem cell subpopulation formation. The most over-expressed miRNAs were miR-4443 and miR-3620. The cytotoxic effect of DPG in U251 and U138MG was observed with an IC50 of 32 and 20 mM for 48 h, respectively. The IC50 of each cell line was used in all further assays. DPG treatment-induced apoptosis is observed by DNA fragmentation and increased TUNEL-positive cells. Cell proliferation and wound-healing assays showed an anti-proliferative and anti-migratory effect by DPG on the evaluated cell lines. In addition, DPG treatment led to a 100% reduction in sphere formation. The qPCR results in U251 and U138MG cells showed that DPG increased miR-4443 (2.44 vs . 1.11, p -value = 0.11; 8.27 vs . 1.25, p -value = 0.04) and miR-3620 expression (1.66 vs. 1.00, p -value = 0.03; 8.47 vs . 1.01, p -value = 0.03) and decreased CD209 (0.44 vs . 1.10, p -value = 0.03; 0.49 vs . 1.07, p -value = 0.04) and TNC (0.20 vs . 1.03, p -value = 0.001; 0.39 vs . 1.06, p -value = 0.01) mRNA levels compared to controls. Our results suggest that DPG inhibits cell viability by activating apoptosis and inhibiting cell proliferation and stem cell subpopulation formation through miR-4443 and miR-3620 upregulation. Both miRNAs are responsible for the post-transcriptional inhibition of NF-κB by CD209 and TNC modulation., Competing Interests: Author JZ is employed by Verdi Cosmetics LLC, Joanópolis, São Paulo, Brazil. The remaining authors declare that the research was conducted without any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Bonafé, dos Santos, Fernandes, Ziegler, Marson, Rocha, Carvalho and Ortega.)
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- 2022
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25. Immunogenicity of SARS-CoV-2 Trimeric Spike Protein Associated to Poly(I:C) Plus Alum.
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Dos-Santos JS, Firmino-Cruz L, da Fonseca-Martins AM, Oliveira-Maciel D, Perez GG, Roncaglia-Pereira VA, Dumard CH, Guedes-da-Silva FH, Santos ACV, Leandro MDS, Ferreira JRM, Guimarães-Pinto K, Conde L, Rodrigues DAS, Silva MVM, Alvim RGF, Lima TM, Marsili FF, Abreu DPB, Ferreira OC Jr, Mohana Borges RDS, Tanuri A, Souza TML, Rossi-Bergmann B, Vale AM, Silva JL, de Oliveira AC, Filardy AD, Gomes AMO, and de Matos Guedes HL
- Subjects
- Adjuvants, Immunologic, Alum Compounds, Animals, CD8-Positive T-Lymphocytes, COVID-19 Vaccines, Humans, Immunoglobulin G, Mice, Poly I-C, SARS-CoV-2, Spike Glycoprotein, Coronavirus, COVID-19, Viral Vaccines
- Abstract
The SARS-CoV-2 pandemic has had a social and economic impact worldwide, and vaccination is an efficient strategy for diminishing those damages. New adjuvant formulations are required for the high vaccine demands, especially adjuvant formulations that induce a Th1 phenotype. Herein we assess a vaccination strategy using a combination of Alum and polyinosinic:polycytidylic acid [Poly(I:C)] adjuvants plus the SARS-CoV-2 spike protein in a prefusion trimeric conformation by an intradermal (ID) route. We found high levels of IgG anti-spike antibodies in the serum by enzyme linked immunosorbent assay (ELISA) and high neutralizing titers against SARS-CoV-2 in vitro by neutralization assay, after two or three immunizations. By evaluating the production of IgG subtypes, as expected, we found that formulations containing Poly(I:C) induced IgG2a whereas Alum did not. The combination of these two adjuvants induced high levels of both IgG1 and IgG2a. In addition, cellular immune responses of CD4
+ and CD8+ T cells producing interferon-gamma were equivalent, demonstrating that the Alum + Poly(I:C) combination supported a Th1 profile. Based on the high neutralizing titers, we evaluated B cells in the germinal centers, which are specific for receptor-binding domain (RBD) and spike, and observed that more positive B cells were induced upon the Alum + Poly(I:C) combination. Moreover, these B cells produced antibodies against both RBD and non-RBD sites. We also studied the impact of this vaccination preparation [spike protein with Alum + Poly(I:C)] in the lungs of mice challenged with inactivated SARS-CoV-2 virus. We found a production of IgG, but not IgA, and a reduction in neutrophil recruitment in the bronchoalveolar lavage fluid (BALF) of mice, suggesting that our immunization scheme reduced lung inflammation. Altogether, our data suggest that Alum and Poly(I:C) together is a possible adjuvant combination for vaccines against SARS-CoV-2 by the intradermal route., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 dos-Santos, Firmino-Cruz, da Fonseca-Martins, Oliveira-Maciel, Perez, Roncaglia-Pereira, Dumard, Guedes-da-Silva, Santos, Leandro, Ferreira, Guimarães-Pinto, Conde, Rodrigues, Silva, Alvim, Lima, Marsili, Abreu, Ferreira Jr., Mohana Borges, Tanuri, Souza, Rossi-Bergmann, Vale, Silva, de Oliveira, Filardy, Gomes and de Matos Guedes.)- Published
- 2022
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26. Dipotassium Glycyrrhizinate on Melanoma Cell Line: Inhibition of Cerebral Metastases Formation by Targeting NF-kB Genes-Mediating MicroRNA-4443 and MicroRNA-3620-Dipotassium Glycyrrhizinate Effect on Melanoma.
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Bonafé GA, Dos Santos JS, Ziegler JV, Marson FAL, Rocha T, and Ortega MM
- Subjects
- Apoptosis, Cell Line, Tumor, Cell Proliferation, Glycyrrhizic Acid pharmacology, Humans, NF-kappa B metabolism, RNA, Messenger, Melanoma drug therapy, Melanoma genetics, Melanoma metabolism, MicroRNAs metabolism
- Abstract
Glycyrrhizic acid (GA), a natural compound isolated from licorice (Glycyrrhiza glabra), has exhibited anti-inflammatory and anti-tumor effects in vitro. Dipotassium glycyrrhizinate (DPG), a dipotassium salt of GA, also has shown an anti-tumor effect on glioblastoma cell lines, U87MG and T98G. The study investigated the DPG effects in the melanoma cell line (SK-MEL-28). MTT assay demonstrated that the viability of the cells was significantly decreased in a time- and dose-dependent manner after DPG (IC50 = 36 mM; 24 h). DNA fragmentation suggested that DPG (IC50) induced cellular apoptosis, which was confirmed by a significant number of TUNEL-positive cells (p-value = 0.048) and by PARP-1 [0.55 vs. 1.02 arbitrary units (AUs), p-value = 0.001], BAX (1.91 vs. 1.05 AUs, p-value = 0.09), and BCL-2 (0.51 vs. 1.07 AUs, p-value = 0.0018) mRNA compared to control cells. The proliferation and wound-healing assays showed an anti-proliferative effect on DPG-IC50-treated cells, also indicating an inhibitory effect on cell migration (p-values < 0.001). Moreover, it was observed that DPG promoted a 100% reduction in melanospheres formation (p-value = 0.008). Our previous microRNAs (miRs) global analysis has revealed that DPG might increase miR-4443 and miR-3620 expression levels. Thus, qPCR showed that after DPG treatment, SK-MEL-28 cells presented significantly high miR-4443 (1.77 vs. 1.04 AUs, p-value = 0.02) and miR-3620 (2.30 vs. 1.00 AUs, p-value = 0.01) expression compared to control cells, which are predicted to target the NF-kB, CD209 and TNC genes, respectively. Both genes are responsible for cell attachment and migration, and qPCR revealed significantly decreased CD209 (1.01 vs. 0.54 AUs, p-value = 0.018) and TNC (1.00 vs. 0.31 AUs, p-value = 2.38 × 10−6) mRNA expression levels after DPG compared to untreated cells. Furthermore, the migration of SK-MEL-28 cells stimulated by 12-O-tetradecanoylphorbol-13-acetate (TPA) was attenuated by adding DPG by wound-healing assay (48 h: p-value = 0.004; 72 h: p-value = 7.0 × 10−4). In addition, the MMP-9 expression level was inhibited by DPG in melanoma cells stimulated by TPA and compared to TPA-treated cells (3.56 vs. 0.99 AUs, p-value = 0.0016) after 24 h of treatment. Our results suggested that DPG has an apoptotic, anti-proliferative, and anti-migratory effect on SK-MEL-28 cells. DPG was also able to inhibit cancer stem-like cells that may cause cerebral tumor formation.
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- 2022
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27. Thermal comfort conditions at microclimate scale and surface urban heat island in a tropical city: A study on João Pessoa city, Brazil.
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de Souza E Silva R, da Silva RM, de Freitas AF, Dos Santos JS, Santos CAG, and de Lima ERV
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- Brazil, Cities, Environmental Monitoring methods, Hot Temperature, Microclimate
- Abstract
Surface urban heat islands (SUHIs) are one of the most studied phenomena in urban climates because they generate problems for the well-being of the urban population. This study analyzed the thermal comfort conditions at microclimate scale and SUHI for João Pessoa city, Brazil. Micrometeorological data (temperature and air humidity data) collected at 10 stations in 2011 and 2018 were used to calculate Thom's discomfort index (TDI) for João Pessoa city. Satellite images from Landsat 5/TM for 1991, 2006, and 2010 and Landsat 8/OLI for 2018 were used for land use and land cover classification and to identify SUHI. The obtained results highlighted that the SUHI area in João Pessoa city was 26 km
2 and that almost half of the heat island area was concentrated in the Geisel, Aeroclube, Valentina, Distrito Industrial, Cristo Redentor, and Mangabeira neighborhoods. Regarding the micrometeorological data, higher values were obtained for 2018 in the dry periods (summer) and during the day. Based on the results, a considerable increase in discomfort during the daytime was observed in urbanized areas of the city from 2010 - 2018 due to the increase in the average temperature in João Pessoa between 1991 and 2018., (© 2022. The Author(s) under exclusive licence to International Society of Biometeorology.)- Published
- 2022
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28. Factors Associated with Emotion Regulation in Men with Internet Access Living in Brazil during the COVID-19 Pandemic.
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Teixeira JRB, Sousa AR, Silva Palma EM, Moreira WC, Santana TDS, Barreto NMPV, de Moura MA, Vergara-Escobar OJ, Fabián José OY, Souza Pereira G, Martins de Oliveira PH, do Nascimento Trindade Dos Santos JS, Camargo ELS, Araújo TM, Mendes IAC, Arena Ventura CA, Carvalho ESS, and Sousa ÁFL
- Subjects
- Adult, Brazil epidemiology, Emotions physiology, Humans, Internet Access, Male, Pandemics, COVID-19 epidemiology, Emotional Regulation
- Abstract
Objective: to evaluate the factors associated with emotion regulation in men with internet access living in Brazil during the COVID-19 pandemic. Method: an epidemiological survey, conducted with 1015 men. An electronic form was applied containing sociodemographic and occupational characteristics, support and coping strategies, as well as emotional and behavioral aspects. Emotion regulation was assessed using the Emotion Regulation Questionnaire . Results: The prevalence values observed were 44.6% for Low Cognitive Reappraisal and of 47.1% for High Emotional Suppression. The following factors were identified as associated: (a) with Low Cognitive Reappraisal: being aged 30 years old or more, practicing physical activity, worrying about social distancing and having positive emotions and feelings; and (b) with High Emotional Suppression: being heterosexual, non-white race/skin color, having security support or public administration, not sanitizing food, worrying about lack of physical activity and not having negative emotions. Conclusion: the adoption of emotion regulation strategies was associated with individual, contextual and emotional/behavioral characteristics. Masculinity ideals seem to exert an influence on these relationships.
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- 2022
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29. Prognostic Value of the Immunohistochemical Expression of RAD51 and BRCA2 in Gastric Adenocarcinoma.
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Pádua JDB, Mariano CFA, Fabro AT, Tirapelli DPDC, Sankarankutty AK, Dos Santos JS, and Brunaldi MO
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- Adenocarcinoma metabolism, BRCA2 Protein biosynthesis, Cohort Studies, Female, Humans, Immunohistochemistry, Male, Middle Aged, Prognosis, Rad51 Recombinase biosynthesis, Retrospective Studies, Stomach Neoplasms metabolism, Adenocarcinoma diagnosis, BRCA2 Protein analysis, Rad51 Recombinase analysis, Stomach Neoplasms diagnosis
- Abstract
Current scientific literature lacks data on the prognostic value of the expression of RAD51 and BRCA2 in gastric adenocarcinoma. Therefore, we aimed to evaluate those and other homologous recombination-related proteins (ATM, ATR, BRCA1, CHK2, γH2AX, p53) in gastric cancer, assessing their correlation with clinical prognosis. Paraffin-embedded samples were obtained from surgical specimens collected in total or subtotal gastrectomy procedures. Between 2008 and 2017, 121 patients with advanced gastric adenocarcinoma underwent surgical resection and were included in this study. Negativity for nuclear RAD51 correlated with vascular invasion, lymph node metastasis, larger tumor size, and lower overall survival and disease-free survival in univariate analysis. However, nuclear RAD51-negative cases presented better response rates to adjuvant therapy than the positive ones. Nuclear ATR negativity correlated with larger tumor size and a higher histological grade. Positivity for ATM was associated with more prolonged disease-free survival. Positivity for nuclear BRCA2 correlated with lower overall survival and diffuse histological type, whereas its high expression was associated with vascular invasion. Nevertheless, tumors positive for nuclear BRCA2 were more frequently low grade in the intestinal histological type. Our findings indicate that RAD51 and BRCA2 are valuable immunohistochemical prognostic markers in gastric adenocarcinoma.
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- 2022
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30. ATLANTIC POLLINATION: a data set of flowers and interaction with nectar-feeding vertebrates from the Atlantic Forest.
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Iamara-Nogueira J, Targhetta N, Allain G, Gambarini A, Pinto AR, Rui AM, Araújo AC, Lopes A, Pereira-Silva B, de Camargo BB, Machado CG, Missagia C, Scultori C, Boscolo D, Fischer E, Araújo-Oliveira ES, Gava H, Paulino-Neto HF, Machado IC, Varassin IG, Sazima I, Vizentin-Bugoni J, Silva JLS, de Oliveira Ferreira J, Narita J, Dos Santos JS, Agostini K, Freitas L, Lopes LE, Carvalho-Leite LJ, Tabarelli M, Rocca MA, Malanotte ML, Alves MAS, Canela MBF, Darrigo MR, Moreira MM, Wolowski M, Sazima M, Galetti M, Ribeiro MC, Groppo M, Kaehler M, Batista MDA, Neto OC, Ferreira PA, Bergamo PJ, Maruyama PK, Bueno RO, Leal RLB, Faria RR, Bazarian S, Malucelli T, and Buzato S
- Subjects
- Animals, Birds, Flowers, Forests, Humans, Mammals, Plant Nectar, Pollination
- Abstract
Flowering plant species and their nectar-feeding vertebrates exemplify some of the most remarkable biotic interactions in the Neotropics. In the Brazilian Atlantic Forest, several species of birds (especially hummingbirds), bats, and non-flying mammals, as well as one lizard feed on nectar, often act as pollinators and contribute to seed output of flowering plants. We present a dataset containing information on flowering plants visited by nectar-feeding vertebrates and sampled at 166 localities in the Brazilian Atlantic Forest. This dataset provides information on 1902 unique interactions among 515 species of flowering plants and 129 species of potential vertebrate pollinators and the patterns of species diversity across latitudes. All plant-vertebrate interactions compiled were recorded through direct observations of visits, and no inferences of pollinators based on floral syndromes were included. We also provide information on the most common plant traits used to understand the interactions between flowers and nectar-feeding vertebrates: plant growth form, corolla length, rate of nectar production per hour in bagged flowers, nectar concentration, flower color and shape, time of anthesis, presence or absence of perceptible fragrance by human, and flowering phenology as well as the plant's threat status by International Union for Conservation of Nature (IUCN) classification. For the vertebrates, status of threat by IUCN classification, body mass, bill or rostrum size are provided. Information on the frequency of visits and pollen deposition on the vertebrate's body is provided from the original source when available. The highest number of unique interactions is recorded for birds (1771) followed by bats (110). For plants, Bromeliaceae contains the highest number of unique interactions (606), followed by Fabaceae (242) and Gesneriaceae (104). It is evident that there was geographical bias of the studies throughout the southeast of the Brazilian Atlantic Forest and that most effort was directed to flower-hummingbird interactions. However, it reflects a worldwide tendency of more plants interacting with birds compared with other vertebrate species. The lack of similar protocols among studies to collect basic data limits the comparisons among areas and generalizations. Nevertheless, this dataset represents a notable effort to organize and highlight the importance of vertebrate pollinators in this hotspot of biodiversity on Earth and represents the data currently available. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or scientific events., (© 2022 The Ecological Society of America.)
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- 2022
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31. Listeria monocytogenes: health risk and a challenge for food processing establishments.
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Dos Santos JS, Biduski B, and Dos Santos LR
- Subjects
- Animals, Food Handling, Food Microbiology, Serogroup, Listeria monocytogenes, Listeriosis epidemiology, Listeriosis prevention & control
- Abstract
Listeria monocytogenes is a pathogenic bacterium present in several environments able to survive and proliferate in food processing plants, contaminating products that when ingested can lead to listeriosis. Worldwide, the bacterium has been isolated from foods of animal and plant origin and its occurrence in ready-to-eat foods is a challenge for food processing establishments. Serotypes 1/2a, 1/2b, 1/2c, and 4b related to 95% of listeriosis cases have been detected in different foods and presented resistance to common antibiotics such as tetracycline and penicillin. The analysis and dissemination of the presence of L. monocytogenes in different foods are essential to anchor control and prevention measures. In Brazil, despite the lack of official data on contamination by L. monocytogenes, some studies have reported the presence of bacteria in various foods and food processing environments. Thus, this review focuses on presenting the main characteristics of the L. monocytogenes, resistance to antimicrobial agents, and occurrence in several foods and countries from 2010 to 2020., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2021
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32. Yellow fever vaccine protects mice against Zika virus infection.
- Author
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Vicente Santos AC, Guedes-da-Silva FH, Dumard CH, Ferreira VNS, da Costa IPS, Machado RA, Barros-Aragão FGQ, Neris RLS, Dos-Santos JS, Assunção-Miranda I, Figueiredo CP, Dias AA, Gomes AMO, de Matos Guedes HL, Oliveira AC, and Silva JL
- Subjects
- Animals, Antibodies, Viral immunology, Chlorocebus aethiops, Disease Models, Animal, Female, Humans, Immunity, Cellular, Interferon-gamma immunology, Mice, Mice, Inbred BALB C, T-Lymphocytes immunology, Vaccination, Vero Cells, Yellow Fever virology, Yellow fever virus genetics, Yellow fever virus immunology, Zika Virus genetics, Zika Virus immunology, Zika Virus Infection immunology, Zika Virus Infection virology, Yellow Fever Vaccine administration & dosage, Zika Virus physiology, Zika Virus Infection prevention & control
- Abstract
Zika virus (ZIKV) emerged as an important infectious disease agent in Brazil in 2016. Infection usually leads to mild symptoms, but severe congenital neurological disorders and Guillain-Barré syndrome have been reported following ZIKV exposure. Creating an effective vaccine against ZIKV is a public health priority. We describe the protective effect of an already licensed attenuated yellow fever vaccine (YFV, 17DD) in type-I interferon receptor knockout mice (A129) and immunocompetent BALB/c and SV-129 (A129 background) mice infected with ZIKV. YFV vaccination provided protection against ZIKV, with decreased mortality in A129 mice, a reduction in the cerebral viral load in all mice, and weight loss prevention in BALB/c mice. The A129 mice that were challenged two and three weeks after the first dose of the vaccine were fully protected, whereas partial protection was observed five weeks after vaccination. In all cases, the YFV vaccine provoked a substantial decrease in the cerebral viral load. YFV immunization also prevented hippocampal synapse loss and microgliosis in ZIKV-infected mice. Our vaccine model is T cell-dependent, with AG129 mice being unable to tolerate immunization (vaccination is lethal in this mouse model), indicating the importance of IFN-γ in immunogenicity. To confirm the role of T cells, we immunized nude mice that we demonstrated to be very susceptible to infection. Immunization with YFV and challenge 7 days after booster did not protect nude mice in terms of weight loss and showed partial protection in the survival curve. When we evaluated the humoral response, the vaccine elicited significant antibody titers against ZIKV; however, it showed no neutralizing activity in vitro and in vivo. The data indicate that a cell-mediated response promotes protection against cerebral infection, which is crucial to vaccine protection, and it appears to not necessarily require a humoral response. This protective effect can also be attributed to innate factors, but more studies are needed to strengthen this hypothesis. Our findings open the way to using an available and inexpensive vaccine for large-scale immunization in the event of a ZIKV outbreak., Competing Interests: The authors have declared that no competing interests exist.
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- 2021
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33. Rhodamine B oxidation promoted by P450-bioinspired Jacobsen catalysts/cellulose systems.
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Bolzon LB, Bindeiro AKDS, de Oliveira Souza ALM, Zanatta LD, de Paula R, Cerqueira BC, and Dos Santos JS
- Abstract
In this work, we investigated the preparation of P450-bioinspired Mn(iii)-Schiff base complexes supported on DEAE-cellulose (( R , R )-Jacobsen/Cell(NEt
2 ) and ( S , S )-Jacobsen/Cell(NEt2 ), respectively) to oxidize substrates of biological interest. Catalysts were characterized by several physical techniques. UV-Vis spectroscopy with diffuse reflectance (DR/UV-Vis) analysis featured peculiar electronic transitions for both complexes. Fourier transform infrared (FTIR) spectra evidenced the characteristic band of imine groups (HC[double bond, length as m-dash]N) for bioinspired/Cell(NEt2 ) materials. Immobilization ratios in cellulose fibres were confirmed by atomic absorption spectroscopic (GF-AAS) analyses. Catalytic essays were conducted during rhodamine B (RhB) oxidation. Supported materials attained oxidative yields close to those of homogeneous systems, and cellulose may be stabilizing the active intermediate catalytic species. Reactions may be driven through two different intermediates: MnV (O) and MnIII (O-OH)salen. Homogeneous reactions suggest an asymmetric catalysis. Heterogeneous system reaction yields are similar, and salen complexes anchored on cellulose conformation would interfere on complex intermediate species configuration. The four possible RhB-oxidation products obtained by the reaction with the homogeneous ( S , S )-Jacobsen catalyst and meta -chloroperoxybenzoic acid ( m -CPBA) system were suggested by1 H NMR analysis, and a catalytic mechanism was proposed., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
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34. The role of circulating miRNAs and CA19-9 in pancreatic cancer diagnosis.
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Vieira NF, Serafini LN, Novais PC, Neto FSL, Cirino MLA, Kemp R, Ardengh JC, Saggioro FP, Gaspar AF, Sankarankutty AK, Júnior JRL, Tirapelli DPDC, and Dos Santos JS
- Abstract
Diagnosis and treatment of pancreatic ductal adenocarcinoma (PA) remains a challenge in clinical practice. The aim of this study was to assess the role of microRNAs (miRNAs-21, -23a, -100, -107, -181c, -210) in plasma and tissue as possible biomarkers in the diagnosis of PA. Samples of plasma (PAp-n = 13), pancreatic tumors (PAt-n = 18), peritumoral regions (PPT-n = 9) were collected from patients during the surgical procedure. The control group consisted of samples from patients submitted to pancreatic surgery for trauma or cadaveric organs (PC-n = 7) and healthy volunteers donated blood (PCp-n = 6). The expression profile of microRNAs was measured in all groups using RT-PCR, serum CA19-9 levels were determined in PA and PC. In tissue samples, there was a difference in the expression of miRNAs-21, -210 ( p < 0.05) across the PAt, PC and PPT groups. The PAp showed overexpression of miRNAs-181c, -210 ( p < 0.05) when compared to PCp. The combination of miRNAs-21, -210 tissue expression and serum CA19-9 showed 100% accuracy in the diagnosis of PA, as well as miR-181c expression in the plasma (PApxPCp). The expression of microRNAs in plasma proved to be a promising tool for a noninvasive detection test for PA, as well as further studies will evaluate the utility of microRNAs expression as biomarkers for prognostic and response to therapy in PA., Competing Interests: CONFLICTS OF INTEREST The authors declare that there was no conflicts of interest that could be perceived to impair the impartiality of the research reported., (Copyright: © 2021 Vieira et al.)
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- 2021
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35. MPLA and AddaVax ® Adjuvants Fail to Promote Intramuscular LaAg Vaccine Protectiveness against Experimental Cutaneous Leishmaniasis.
- Author
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Oliveira-Maciel D, Dos-Santos JS, Oliveira-Silva G, Mello MF, da Fonseca-Martins AM, Carneiro MPD, Ramos TD, Firmino-Cruz L, Gomes DCO, Rossi-Bergmann B, and de Matos Guedes HL
- Abstract
There is so far no vaccine approved for human leishmaniasis, mainly because of the lack of appropriate adjuvants. This study aimed to evaluate in mice the capacity of a mixture of monophosphoryl lipid A (MPLA) and AddaVax
® adjuvants in enhancing the efficacy of a Leishvacin® -like vaccine comprised of Leishmania amazonensis whole antigens (LaAg). For that, mice were immunized with LaAg plus MPLA/AddaVax® by the intramuscular route (i.m.) prior to challenge with 2 × 105 and 2 × 106 living parasites. Immunization with LaAg alone reduced the lesion growth of the 2 × 105 -challenged mice only in the peak of infection, but that was not accompanied by reduced parasite load, and thus not considered protective. Mice given a 2 × 106 -challenge were not protected by LaAg. The association of LaAg with MPLA/AddaVax® was able to enhance the cutaneous hypersensitivity response compared with LaAg alone. Despite this, there was no difference in proliferative cell response to antigen ex vivo. Moreover, regardless of the parasite challenge, association of LaAg with MPL/AddaVax® did not significantly enhance protection in comparison with LaAg alone. This work demonstrated that MPL/AddaVax® is not effective in improving the efficacy of i.m. LaAg vaccine against cutaneous leishmaniasis.- Published
- 2021
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36. Viability of the use of mycotoxin adsorbent in the finishing of Texel lambs in confinement.
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de Almeida Rego FC, Savio PLO, Pertile SFN, Dos Santos JS, Eleodoro JI, Teixeira AJC, Zundt M, da Cunha Filho LFC, and Barreto JVP
- Subjects
- Animal Feed analysis, Animals, Body Composition, Body Weight, Female, Male, Sheep, Sheep, Domestic, Weight Gain, Mycotoxins
- Abstract
The objective of the present study was to evaluate the viability of a mycotoxin adsorbent based on beta-glucans from cell walls of Saccharomyces cerevisiae and bentonites in the diets of confined lambs of the Texel breed. Twenty-four lambs (12 males and 12 females) with an average weight of 18.6 kg ± 1.6 were divided into two groups: treated (with adsorbent) and control. The animal diets contained the mycotoxins aflatoxin B1, fumonisin B1 and B2, zearalenone, and deoxynivalenol in concentrations within guidance levels. The animals were slaughtered with body weight of approximately 26.4 kg. The performance and carcass variables of the lambs were evaluated. The daily weight gain was higher in the treated group (216.24 g) than in the control group (185.90 g). The averages for loin eye area, subcutaneous fat thickness, and marbling were 13.93 cm
2 , 2.66 mm, and 3.20 in the treated group and 12.16 cm2 , 2.6 mm, and 3.25 in the control group, respectively. The true, hot, and cold carcass yield, and the carcass cooling losses did not differ between groups. The carcasses were similar in conformation and fat finishing degree, with averages of 3.95 and 3.83, respectively. To the best of our knowledge, this is the first study to evaluate the effect of a mycotoxin additive in the diet of finishing lambs. The use of mycotoxin adsorbent in confined lambs was feasible, and its use resulted in greater daily weight gain in lambs and average net profit.- Published
- 2021
- Full Text
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37. Agricultural Landscape Heterogeneity Matter: Responses of Neutral Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree.
- Author
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do Amaral TS, Dos Santos JS, Rosa FF, Pessôa MB, Chaves LJ, Ribeiro MC, and Collevatti RG
- Abstract
Plants are one of the most vulnerable groups to fragmentation and habitat loss, that may affect community richness, abundance, functional traits, and genetic diversity. Here, we address the effects of landscape features on adaptive quantitative traits and evolutionary potential, and on neutral genetic diversity in populations of the Neotropical savanna tree Caryocar brasiliense . We sampled adults and juveniles in 10 savanna remnants within five landscapes. To obtain neutral genetic variation, we genotyped all individuals from each site using nine microsatellite loci. For adaptive traits we measured seed size and mass and grown seeds in nursery in completely randomized experimental design. We obtained mean, additive genetic variance ( V
a ) and coefficient of variation ( CVa %), which measures evolvability, for 17 traits in seedlings. We found that landscapes with higher compositional heterogeneity (SHDI) had lower evolutionary potential ( CVa %) in leaf length (LL) and lower aboveground dry mass (ADM) genetic differentiation ( QST ). We also found that landscapes with higher SHDI had higher genetic diversity ( He ) and allelic richness ( AR ) in adults, and lower genetic differentiation ( FST ). In juveniles, SHDI was also positively related to AR . These results are most likely due to longer dispersal distance of pollen in landscapes with lower density of flowering individuals. Agricultural landscapes with low quality mosaic may be more stressful for plant species, due to the lower habitat cover (%), higher cover of monocropping (%) and other land covers, and edge effects. However, in landscapes with higher SHDI with high quality mosaic, forest nearby savanna habitat and the other environments may facilitate the movement or provide additional habitat and resources for seed disperses and pollinators, increasing gene flow and genetic diversity. Finally, despite the very recent agriculture expansion in Central Brazil, we found no time lag in response to habitat loss, because both adults and juveniles were affected by landscape changes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Amaral, Santos, Rosa, Pessôa, Chaves, Ribeiro and Collevatti.)- Published
- 2021
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38. HIV-1C and HIV-1B Tat protein polymorphism in Southern Brazil.
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de Almeida SM, Rotta I, Vidal LRR, Dos Santos JS, Nath A, Johnson K, Letendre S, and Ellis RJ
- Subjects
- Adult, Brazil, Cross-Sectional Studies, Female, Humans, Male, Middle Aged, HIV-1 genetics, Polymorphism, Single Nucleotide genetics, tat Gene Products, Human Immunodeficiency Virus genetics
- Abstract
The transactivator of transcription (Tat) is a key HIV regulatory protein. We aimed to identify the frequency of key polymorphisms in HIV-1C compared with HIV-1B Tat protein, chiefly in the cysteine-, arginine-, and glutamine-rich domains and identify novel point mutations in HIV-1B and C sequences from Southern Brazil. This study was the first to investigate the genetic diversity and point mutations within HIV-1 Tat C in a Brazilian cohort. This was an observational, cross-sectional study, which included sequences of HIV-1B (n = 20) and HIV-1C (n = 21) from Southern Brazil. Additionally, 344 HIV-1C sequences were obtained from the Los Alamos database: 29 from Brazil and 315 from Africa, Asia, and Europe. The frequency of C31S substitution on HIV-1 Tat C in Brazil was 82% vs. 10% in the HIV-1B group (p < 0.0001). The frequency of the R57S substitution among the HIV-1C sequences from Brazil was 74% vs. 20% in HIV-1B (p = 0.004), and that of substitution Q63E in HIV-1C was 80% and 20% in HIV-1B (p < 0.0001). The mutation P60Q was more frequent in HIV-1B than in HIV-1C (55% and 6.12%, respectively, p < 0.0001)). Novel point mutations in the HIV-1C and B Tat functional domains were described. The frequency of C31S and other key point mutations in HIV-1 Tat C in Brazil were similar to those described in Africa, although lower than those in India. The Tat-B and C sequences found in Southern Brazil are consistent with biological differences and have potential implications for HIV-1 subtype pathogenesis.
- Published
- 2021
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39. Corrigendum: Cinnamaldehyde Inhibits Staphylococcus aureus Virulence Factors and Protects against Infection in a Galleria mellonella Model.
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Ferro TAF, Araújo JMM, Dos Santos Pinto BL, Dos Santos JS, Souza EB, da Silva BLR, Colares VLP, Novais TMG, Filho CMB, Struve C, Calixto JB, Monteiro-Neto V, da Silva LCN, and Fernandes ES
- Abstract
[This corrects the article DOI: 10.3389/fmicb.2016.02052.]., (Copyright © 2021 Ferro, Araújo, dos Santos Pinto, dos Santos, Souza, da Silva, Colares, Novais, Filho, Struve, Calixto, Monteiro-Neto, da Silva and Fernandes.)
- Published
- 2021
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40. Photodynamic therapy of extrahepatic cholangiocarcinoma using digital cholangioscopy.
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Brunaldi VO, Brunaldi JE, Vollet-Filho JD, Brunaldi MO, Ardengh JC, Bagnato VS, Dos-Santos JS, and Kemp R
- Subjects
- Aged, 80 and over, Bile Ducts, Intrahepatic, Fatal Outcome, Humans, Male, Bile Duct Neoplasms diagnostic imaging, Bile Duct Neoplasms drug therapy, Cholangiocarcinoma diagnostic imaging, Cholangiocarcinoma drug therapy, Endoscopy, Digestive System, Photochemotherapy
- Abstract
Background: Photodynamic therapy (PDT) of an extrahepatic cholangiocarcinoma using a digital cholangioscopy to deliver the laser., Background: Cholangiocarcinoma is an aggressive neoplasm that usually requires palliative biliary drainage. Photodynamic therapy (PDT) has been described as a successful adjunct treatment to malignant biliary obstruction., Aim: To describe the use of digital cholangioscope to help provide laser light during biliary PDT session using locally developed light source., Method: Patient receives intravenous photosensitizer 24 h before the procedure. It starts with a regular duodenoscopy. After identification of the major papilla and retrograde cannulation, the digital cholangioscope is introduced into the common bile duct. Then, the cholangioscopic examination helps to identify the neoplastic stricture. Under direct visualization lighting catheter is advanced through the cholangioscope. Repositioning is recommended every centimeter to cover all strictured area. At the end of the procedure, a final cholangioscopy assesses the bile duct for the immediate result and adverse events., Result: This procedure was applied in one 82-year-old male due to obstructive jaundice in the last two months. EUS and ERCP revealed a severe dilation of the common bile duct associated with choledocholithiasis. Besides, was revealed dilation of hepatic duct up to a well-circumscribed hypoechoic solid mass measuring 1.8x2 cm compressing the common hepatic duct. The mass was deemed unresectable and the patient was referred for palliative treatment with PDT. He remained asymptomatic for three months. He perished due to complications 15 months after the PDT session., Conclusion: Digital cholangioscopy-guided biliary PDT is feasible and seems safe and effective as an adjunct modality in the palliation of extrahepatic cholangiocarcinoma.
- Published
- 2020
- Full Text
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41. Combined therapy with adipose tissue-derived mesenchymal stromal cells and meglumine antimoniate controls lesion development and parasite load in murine cutaneous leishmaniasis caused by Leishmania amazonensis.
- Author
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Ramos TD, Silva JD, da Fonseca-Martins AM, da Silveira Pratti JE, Firmino-Cruz L, Maciel-Oliveira D, Dos-Santos JS, Tenorio JIN, de Araujo AF, Freire-de-Lima CG, Diaz BL, Cruz FF, Rocco PRM, and de Matos Guedes HL
- Subjects
- Animals, Meglumine Antimoniate, Mice, Mice, Inbred C57BL, Parasite Load, Vascular Endothelial Growth Factor A, Leishmania, Leishmaniasis, Cutaneous therapy, Mesenchymal Stem Cells
- Abstract
Background: Leishmaniasis is a neglected disease caused by Leishmania spp. One of its characteristics is an imbalance of host immune responses to foster parasite survival. In this setting, mesenchymal stromal cells (MSCs) may be a viable therapeutic alternative, given their well-established immunomodulatory potential. In this study, we compared the effects of therapy with bone marrow (BM)- and adipose tissue (AD)-derived MSCs in leishmaniasis caused by Leishmania amazonensis in C57BL/6 mice. After determining the most effective MSC source, we then combined these cells with meglumine antimoniate (a pentavalent antimonial commonly used for the treatment of leishmaniasis) to treat the infected mice., Methods: In vitro, co-culture of AD-MSCs and BM-MSCs with Leishmania amazonensis-infected macrophages was performed to understand the influence of both MSC sources in infected cells. In vivo, infected C57BL/6 mice were treated with phosphate-buffered saline (PBS), AD-MSCs and BM-MSCs, and then meglumine antimoniate was combined with MSCs from the most effective source., Results: In vitro, co-culture of Leishmania amazonensis-infected macrophages with BM-MSCs, compared to AD-MSCs, led to a higher parasite load and lower production of nitric oxide. Fibroblasts grown in conditioned medium from co-cultures with AD-MSCs promoted faster wound healing. Despite a non-significant difference in the production of vascular endothelial growth factor, we observed higher production of tumor necrosis factor-α and interleukin (IL)-10 in the co-culture with AD-MSCs. In vivo, treatment of infected mice with BM-MSCs did not lead to disease control; however, the use of AD-MSCs was associated with partial control of lesion development, without significant differences in the parasite load. AD-MSCs combined with meglumine antimoniate reduced lesion size and parasite load when compared to PBS and AD-MSC groups. At the infection site, we detected a small production of IL-10, but we were unable to detect production of either IL-4 or interferon-γ, indicating resolution of infection without effect on the percentage of regulatory T cells., Conclusion: Combination treatment of cutaneous leishmaniasis with AD-MSCs and meglumine antimoniate may be a viable alternative.
- Published
- 2020
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42. Adverse events and mortality: comparative analysis between diagnostic and interventional endoscopic ultrasound.
- Author
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Marchetti G, Ricardo VD, Ardengh AO, de Almeida AF, Taglieri E, Micelli-Neto O, Kemp R, Dos Santos JS, and Ardengh JC
- Subjects
- Acute Disease, Humans, Retrospective Studies, Endosonography adverse effects, Pancreatitis, Ultrasonography, Interventional adverse effects
- Abstract
Background and Aims: Escalating an indication of EUS for diagnosis and treatment justifies the evaluation of the conditions associated with the adverse events (AE) and related deaths. The aim is to evaluate and compare the incidence of AE and deaths after diagnostic-EUS (D-EUS) and interventional-EUS (I-EUS)., Methods: This retrospective study included patients undergoing D-EUS and I-EUS, in two centers for 28 years (03/1992 to 12/2019). Were noted parameters such as: age, gender, indication of EUS, modality, time of occurrence and severity of AE, type of treatment imposed and whether there was death. Descriptive analysis was performed using means, standard deviation and frequencies of the variables of interest., Results: 13,196 procedures performed, 9843 D-EUS and 3353 I-EUS. Thirty-seven (0.3%) had AE with six deaths (0.04%). The overall rate of AE for D-EUS and I-EUS was 0.08% and 0.86%, respectively ( p > .05). Three deaths (0.03%) occurred after D-EUS and three (0.09%) after I-EUS. AE were immediate and early in 70% and 30%, respectively, with no late complications. Perforation was detected immediately in 80% and early in 20%, being more frequent after D-EUS than I-EUS. Acute pancreatitis occurred immediately in 70% and early in 30%. The AE were mild, moderate, and severe in 35.1%, 27%, and 37.8%, respectively. Overall, D-EUS presented the majority of AE as severe (87.5%), while I-EUS presented mild AE in most cases (41.4%), followed by severe complications (24.1%)., Conclusions: Despite the low incidence of AE and mortality after EUS, the occurrence of severe complications, especially perforation in D-EUS, may support the review of therapeutic protocols, aiming to ensure that a quality and safety process is implemented in the practice of EUS.
- Published
- 2020
- Full Text
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43. Endoscopic Ultrasound-Guided Fine-Needle Aspiration Microhistology in Asymptomatic and Symptomatic Pancreatic Cystic Lesions.
- Author
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Vaiciunas S, Taglieri E, Micelli-Neto O, Brunaldi MO, Venco F, Goldman SM, Kemp R, Dos Santos JS, and Ardengh JC
- Subjects
- Adolescent, Adult, Age Factors, Aged, Aged, 80 and over, Amylases analysis, Asymptomatic Diseases, Biomarkers, Tumor analysis, Carcinoma diagnosis, Carcinoma diagnostic imaging, Carcinoma in Situ diagnosis, Carcinoma in Situ diagnostic imaging, Child, Diagnosis, Differential, Endoscopic Ultrasound-Guided Fine Needle Aspiration adverse effects, Female, Histological Techniques methods, Humans, Male, Middle Aged, Pancreatic Cyst chemistry, Pancreatic Cyst etiology, Pancreatic Cyst pathology, Pancreatic Diseases complications, Pancreatic Diseases diagnosis, Pancreatic Neoplasms chemistry, Pancreatic Neoplasms diagnostic imaging, Pancreatic Neoplasms pathology, Precancerous Conditions diagnosis, Precancerous Conditions diagnostic imaging, Predictive Value of Tests, Young Adult, Endoscopic Ultrasound-Guided Fine Needle Aspiration methods, Pancreatic Cyst diagnostic imaging, Pancreatic Neoplasms diagnosis
- Abstract
Objective: This study aimed to analyze the usefulness of endoscopic ultrasound-guided fine-needle aspiration (EUS-FNA) microhistology to detect malignancy in pancreatic cystic lesions (PCLs)., Methods: Patients with PCLs were identified and submitted to EUS-FNA from January 2010 to January 2017. The percentage of samples suitable for diagnostic classification by microhistology and the positive and negative likelihood ratios to detect malignancy in asymptomatic (APC) and symptomatic (SPC) PCLs were determined., Results: Endoscopic ultrasound-guided fine-needle aspiration was performed in 510 patients. The resulting material was processed by microhistology and useful for diagnosis in 432 (84.2%). Clinical characteristics of APC (341) and SPC (169) revealed that APC patients were younger (P = 0.004) and had smaller PCLs (23 vs 35 mm; P < 0.001). In APC, we found more preneoplastic (38.7% vs 30.2%; P = 0.0016) and a lower number of malignant PCLs (8.2% vs 24.3%; P < 0.001). In APC and SPC, the sensitivity, specificity, positive predictive value, negative predictive value, and accuracy of microhistology to detect malignancy were 71.4%, 99.7%, 95.2%, 97.5%, and 97.4% (k = 0.80) and 58.5%, 96.9%, 85.7%, 87.9%, and 87.6%, respectively., Conclusions: Endoscopic ultrasound-guided fine-needle aspiration was technically feasible. Microhistology was especially useful to detect neoplastic or malignant PCLs in APC patients.
- Published
- 2020
- Full Text
- View/download PDF
44. Synthesis of quinoline derivatives as potential cysteine protease inhibitors.
- Author
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Andrade MM, Martins LC, Marques GV, Silva CA, Faria G, Caldas S, Dos Santos JS, Leclercq SY, Maltarollo VG, Ferreira RS, and Oliveira RB
- Subjects
- Antiprotozoal Agents chemical synthesis, Antiprotozoal Agents chemistry, Cysteine Proteinase Inhibitors chemical synthesis, Cysteine Proteinase Inhibitors chemistry, Leishmania drug effects, Molecular Docking Simulation, Molecular Structure, Parasitic Sensitivity Tests, Protozoan Proteins metabolism, Quinolines chemical synthesis, Quinolines chemistry, Trypanosoma cruzi drug effects, Antiprotozoal Agents pharmacology, Cysteine Endopeptidases metabolism, Cysteine Proteinase Inhibitors pharmacology, Protozoan Proteins antagonists & inhibitors, Quinolines pharmacology
- Abstract
Aim: Cysteine proteases are important molecular targets involved in the replication, virulence and survival of parasitic organisms, including Trypanosoma and Leishmania species. Methodology & results: Analogs of the 7-chloro- N -[3-(morpholin-4-yl)propyl]quinolin-4-amine were synthesized and their inhibitory activity against the enzymes cruzain and rhodesain as well as against promastigotes forms of Leishmania species and epimastigotes forms of Trypanosoma cruzi were evaluated. Five compounds showed activity against both enzymes with half maximal inhibitory concentration (IC
50 ) values ranging from 23 to 123 μM. Among these, compounds 3 and 4 displayed leishmanicidal activity; compound 4 was the most promising with IC50 values <10 μM and no cytotoxicity for uninfected cells. Conclusion: The results obtained indicate that cysteine proteases are likely to be the molecular target of compounds 3 and 4 .- Published
- 2020
- Full Text
- View/download PDF
45. Multi-Scale Landscape Influences on Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree.
- Author
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Collevatti RG, Dos Santos JS, Rosa FF, Amaral TS, Chaves LJ, and Ribeiro MC
- Abstract
Changes in landscape structure can affect essential population ecological features, such as dispersal and recruitment, and thus genetic processes. Here, we analyze the effects of landscape metrics on adaptive quantitative traits variation, evolutionary potential, and on neutral genetic diversity in populations of the Neotropical savanna tree Tabebuia aurea . Using a multi-scale approach, we sampled five landscapes with two sites of savanna in each. To obtain neutral genetic variation, we genotyped 60 adult individuals from each site using 10 microsatellite loci. We measured seed size and mass. Seeds were grown in nursery in completely randomized experimental design and 17 traits were measured in seedlings to obtain the average, additive genetic variance ( V
a ) and coefficient of variation ( CVa %), which measures evolvability, for each trait. We found that habitat loss increased genetic diversity ( He ) and allelic richness ( AR ), and decreased genetic differentiation among populations ( FST ), most likely due to longer dispersal distance of pollen in landscapes with lower density of flowering individuals. Habitat amount positively influenced seed size. Seeds of T. aurea are wind-dispersed and larger seeds may be dispersed to short distance, increasing genetic differentiation and decreasing genetic diversity and allelic richness. Evolvability ( CVa %) in root length decreased with habitat amount. Savanna trees have higher root than shoot growth rate in the initial stages, allowing seedlings to obtain water from water tables. Landscapes with lower habitat amount may be more stressful for plant species, due to the lower plant density, edge effects and the negative impacts of agroecosystems. In these landscapes, larger roots may provide higher ability to obtain water, increasing survival and avoiding dying back because of fire. Despite the very recent agriculture expansion in Central Brazil, landscape changes are affecting neutral and adaptive variation in T. aurea . Several populations have low additive genetic variation for some traits and thus, may have limited evolvability, which may jeopardize species long-term persistence. The effect of habitat loss on highly variable neutral loci may only be detected after a certain threshold of population size is attained, that could become dangerously small masking important losses of heterozygosity endangering species conservation., (Copyright © 2020 Collevatti, dos Santos, Rosa, Amaral, Chaves and Ribeiro.)- Published
- 2020
- Full Text
- View/download PDF
46. Analysis of risk factors associated with acute pancreatitis after endoscopic papillectomy.
- Author
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Taglieri E, Micelli-Neto O, Bonin EA, Goldman SM, Kemp R, Dos Santos JS, and Ardengh JC
- Subjects
- Adult, Aged, Aged, 80 and over, Common Bile Duct Neoplasms surgery, Female, Humans, Male, Middle Aged, Odds Ratio, Retrospective Studies, Risk Factors, Pancreatitis etiology, Prophylactic Surgical Procedures adverse effects, Sphincterotomy, Endoscopic adverse effects
- Abstract
Acute pancreatitis (AP) is a common adverse event (AE) of endoscopic papillectomy (EP). Prophylactic plastic pancreatic stent (PPS) placement appears to prevent AP. We evaluated factors associated with post-EP AP by a retrospective analysis of patients with tumors of the duodenal papilla who underwent EP from January 2008 to November 2016 at 2 tertiary care centers. Clinical, laboratory, endoscopic ultrasound parameters, and PPS placement were evaluated. Seventy-two patients underwent EP (37 men), with mean age of 60.3 (31-88) years. Mean main pancreatic duct (MPD) diameter was 0.44 (0.18-1.8) cm. Mean tumor size was 1.8 (0.5-9.6) cm. Tumors were staged as uT1N0, uT2N0, and uT1N1 in 87.5%, 11.1%, and 1.4%. Thirty-eight AEs occurred in 33 (45.8%) patients, with no mortality. Total bilirubin, tumor size, MPD diameter, and PPS placement had odds ratios (ORs) of 0.82, 0.14, 0.00, and 6.43 for AP. Multivariate analysis (PPS placement × MPD diameter) showed ORs of 4.62 (95%CI, 1.03-21.32; p = 0.049) and 0.000 (95%CI, 0.00-0.74; p = 0.042) for AP. In conclusion, patients with jaundice, large tumors, and dilated MPD seem less likely to have post-EP AP. PPS placement was associated with a higher risk of AP, which may question its use.
- Published
- 2020
- Full Text
- View/download PDF
47. Characterising the spatial distribution of opportunities and constraints for land sparing in Brazil.
- Author
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Dos Santos JS, Feltran-Barbieri R, Fonte ES, Balmford A, Maioli V, Latawiec A, Strassburg BBN, and Phalan BT
- Abstract
Brazil is a megadiversity country with more tropical forest than any other, and is a leading agricultural producer. The technical potential to reconcile these roles by concentrating agriculture on existing farmland and sparing land for nature is well-established, but the spatial overlap of this potential with conservation priorities and institutional constraints remains poorly understood. We mapped conservation priorities, food production potential and socio-economic variables likely to influence the success of land sparing. Pasture occupies 70% of agricultural land but contributes ≤11% of the domestic food supply. Increasing yields on pasture would add little to Brazil's food supply but - if combined with concerted conservation and restoration policies - provides the greatest opportunities for reducing land demand. Our study illustrates a method for identifying municipalities where land-sparing policies are most likely to succeed, and those where further effort is needed to overcome constraints such as land tenure insecurity, lack of access to technical advice, labour constraints, and non-compliance with environmental law.
- Published
- 2020
- Full Text
- View/download PDF
48. Successful closure of a complicated endoscopic ultrasound-related duodenal perforation.
- Author
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Ardengh JC, Porto Filho RM, Brunaldi VO, Brunaldi JE, Ferreira Filho JA, Kemp R, and Dos Santos JS
- Subjects
- Endosonography, Humans, Duodenal Ulcer, Intestinal Perforation diagnostic imaging, Intestinal Perforation etiology, Intestinal Perforation surgery, Peptic Ulcer Perforation
- Abstract
Competing Interests: None
- Published
- 2020
- Full Text
- View/download PDF
49. B-1 lymphocytes are able to produce IL-10, but is not pathogenic during Leishmania (Leishmania) amazonensis infection.
- Author
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Firmino-Cruz L, Ramos TD, da Fonseca-Martins AM, Oliveira-Maciel D, Oliveira-Silva G, Dos Santos JS, Cavazzoni C, Morrot A, Gomes DCO, Vale AM, Decoté-Ricardo D, Freire-de-Lima CG, and de Matos Guedes HL
- Subjects
- Animals, Cells, Cultured, Disease Models, Animal, Host-Pathogen Interactions, Humans, Leishmania physiology, Mice, Mice, Inbred BALB C, Virulence, B-Lymphocyte Subsets immunology, Interleukin-10 metabolism, Leishmaniasis immunology
- Abstract
Over the years research has found an association between B lymphocytes and pathogenesis during Leishmania sp. infections. Recently we demonstrated that B-2 lymphocytes are the main producers of IL-10 during L. amazonensis infection, and that the disease severity in BALB/c mice was attributed to these IL-10-producing B-2 lymphocytes. Here, we aim to understand the role of peritoneal B-1 lymphocytes in the pathogenesis of L. amazonensis infection. We found that infection resulted in a decrease in the number of B-1a lymphocytes and increase in B-1b lymphocytes in the peritoneal cavity of WT BALB/c mice but not in B lymphocyte deficient mice (BALB/Xid) mice. In vitro interaction between B-1 lymphocytes and L. amazonensis showed that the amastigote form of the parasite was able to induce higher levels of IL-10 in B-1 lymphocytes derived from infected BALB/c mice than the promastigote. Moreover, B-1 lymphocytes derived from infected mice produced more IL-10 than B-1 lymphocytes derived from naïve mice under amastigote interaction. However, the repopulation of BALB/Xid mice with B-1 lymphocytes from WT BALB/c mice did not affect the lesion development. Together, these results suggest that although B-1 lymphocytes are able to produce IL-10 during in vitro interaction with L. amazonensis, they are not directly related to pathogenesis in vivo., (Copyright © 2019 Elsevier GmbH. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
50. Detection and quantification of human immunodeficiency virus and hepatitis C virus in cadaveric tissue donors using different molecular tests.
- Author
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Ribeiro VST, Raboni SM, Suss PH, Cieslinski J, Kraft L, Dos Santos JS, Pereira L, and Tuon FF
- Subjects
- Adolescent, Adult, Aged, Cadaver, Child, Female, HIV Infections blood, Hepatitis C blood, Humans, Limit of Detection, Male, Middle Aged, RNA, Viral blood, Reproducibility of Results, Sensitivity and Specificity, Viral Load, Young Adult, HIV-1 isolation & purification, Hepacivirus isolation & purification, Pathology, Molecular methods, Reagent Kits, Diagnostic, Tissue Donors
- Abstract
Background: Tissues from cadaveric donors are used in several clinical circumstances, and the transmission of infectious diseases has been reported. Cadaveric donor (CD) blood sample analysis is challenging due to its poor quality. However, studies have demonstrated the usefulness of molecular based methods, and the lack of studies using available commercial molecular tests was reported., Objective: The aim of this study was to evaluate the performance, specificity, sensitivity, and accuracy of different commercial molecular tests for HIV and HCV detection and quantification in CD through spiked samples., Study Design: 20 CD and 20 blood donor samples were tested using 1,000 copies/mL and 1,000 IU/mL of lyophilized standards of HIV and HCV, respectively. Samples were analyzed by different molecular kits: XPERT HCV Viral Load and HIV-1 (Cepheid), COBAS® TaqMan® HIV-1 and COBAS® TaqMan® HCV Test, v2.0 (Roche), and artus® HI Virus-1 QS-RGQ and artus® HCV RG RT-PCR Kit (Qiagen)., Results: HIV and HCV in CD were detected by RT-PCR-based quantitative kits. The tests performed by the Cepheid and the Roche kits showed the most accurate, sensitive and specific results, however, a wide variability between the assays and kits was observed. The Qiagen kits did not demonstrate satisfactory results., Conclusions: CD evaluation showed great variability. The Cepheid and Roche kits were more sensitive for detecting HIV on CD and Cepheid was the most efficient kit for HCV quantification in CD. The Roche and Cepheid kits can be used to screen tissue donors for HIV and HCV., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
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