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High-dimensional data, characterized by many features, can be difficult to visualize effectively. Dimensionality reduction techniques, such as PCA, UMAP, and t-SNE, address this challenge by projecting the data into a lower-dimensional space while preserving important relationships. TopoMap is another technique that excels at preserving the underlying structure of the data, leading to interpretable visualizations. In particular, TopoMap maps the high-dimensional data into a visual space, guaranteeing that the 0-dimensional persistence diagram of the Rips filtration of the visual space matches the one from the high-dimensional data. However, the original TopoMap algorithm can be slow and its layout can be too sparse for large and complex datasets. In this paper, we propose three improvements to TopoMap: 1) a more space-efficient layout, 2) a significantly faster implementation, and 3) a novel TreeMap-based representation that makes use of the topological hierarchy to aid the exploration of the projections. These advancements make TopoMap, now referred to as TopoMap++, a more powerful tool for visualizing high-dimensional data which we demonstrate through different use case scenarios., Comment: This is the author's version of the article that has been accepted for publication in IEEE Transactions on Visualization and Computer Graphics (TVCG)

We present an efficient method for adapting a monolingual Large Language Model (LLM) to another language, addressing challenges of catastrophic forgetting and tokenizer limitations. We focus this study on adapting Llama 2 to Arabic. Our two-stage approach begins with expanding the vocabulary and training only the embeddings matrix, followed by full model continual pre-training on a bilingual corpus. By continually pre-training on a mix of Arabic and English corpora, the model retains its proficiency in English while acquiring capabilities in Arabic. Our approach results in significant improvements in Arabic and slight enhancements in English, demonstrating cost-effective cross-lingual transfer. We perform ablations on embedding initialization techniques, data mix ratios, and learning rates and release a detailed training recipe. To demonstrate generalizability of this approach we also adapted Llama 3 8B to Arabic and Llama 2 13B to Hindi.

Meta-learning frameworks for few-shot learning aims to learn models that can learn new skills or adapt to new environments rapidly with a few training examples. This has led to the generalizability of the developed model towards new classes with just a few labelled samples. However these networks are seen as black-box models and understanding the representations learnt under different learning scenarios is crucial. Neural collapse ($\mathcal{NC}$) is a recently discovered phenomenon which showcases unique properties at the network proceeds towards zero loss. The input features collapse to their respective class means, the class means form a Simplex equiangular tight frame (ETF) where the class means are maximally distant and linearly separable, and the classifier acts as a simple nearest neighbor classifier. While these phenomena have been observed in simple classification networks, this study is the first to explore and understand the properties of neural collapse in meta learning frameworks for few-shot learning. We perform studies on the Omniglot dataset in the few-shot setting and study the neural collapse phenomenon. We observe that the learnt features indeed have the trend of neural collapse, especially as model size grows, but to do not necessarily showcase the complete collapse as measured by the $\mathcal{NC}$ properties., Comment: 9 pages, 6 figures

Digital cognitive tests offer several potential advantages over established paper-pencil tests but have not yet been fully evaluated for the clinical evaluation of mild cognitive impairment. The NeuroCognitive Performance Test (NCPT) is a web-based, self-directed, modular battery intended for repeated assessments of multiple cognitive domains. Our objective was to examine its relationship with the ADAS-Cog and MMSE as well as with established paper-pencil tests of cognition and daily functioning in MCI. We used Spearman correlations, regressions and principal components analysis followed by a factor analysis (varimax rotated) to examine our objectives. In MCI subjects, the NCPT composite is significantly correlated with both a composite measure of established tests (r=0.78, p<0.0001) as well as with the ADAS-Cog (r=0.55, p<0.0001). Both NCPT and paper-pencil test batteries had a similar factor structure that included a large g component with a high eigenvalue. The correlation for the analogous tests (e.g. Trails A and B, learning memory tests) were significant (p<0.0001). Further, both the NCPT and established tests significantly (p< 0.01) predicted the University of California San Diego Performance-Based Skills Assessment and Functional Activities Questionnaire, measures of daily functioning. The NCPT, a web-based, self-directed, computerized test, shows high concurrent validity with established tests and hence offers promise for use as a research or clinical tool in MCI. Despite limitations such as a relatively small sample, absence of control group and cross-sectional nature, these findings are consistent with the growing literature on the promise of self-directed, web-based cognitive assessments for MCI., Comment: 17 Pages

Digit therapeutics are novel software devices that clinicians may utilize in delivering quality mental health care and ensuring positive outcomes. However, uptake of digital therapeutics and clinically tested software-based programs remains low. This article presents possible reasons for attrition and low engagement in clinical studies investigating digital therapeutics, analyses of studies in which engagement was high, and design constructs that may encourage user engagement. The aim is to shed light on the importance of real-world attrition data of digital therapeutics, and important characteristics of medical devices that have positively influenced user engagement. The findings presented in this article will be useful to relevant stakeholders and medical device experts tasked with addressing the gap between software medical design and user engagement present in digital therapeutic clinical trials., Comment: 11 pages, 1 table

Given the massive growth in the volume of spatial data, there is a great need for systems that can efficiently evaluate spatial queries over large data sets. These queries are notoriously expensive using traditional database solutions. While faster response times can be attained through powerful clusters or servers with large main-memory, these options, due to cost and complexity, are out of reach to many data scientists and analysts making up the long tail. Graphics Processing Units (GPUs), which are now widely available even in commodity desktops and laptops, provide a cost-effective alternative to support high-performance computing, opening up new opportunities to the efficient evaluation of spatial queries. While GPU-based approaches proposed in the literature have shown great improvements in performance, they are tied to specific GPU hardware and only handle specific queries over fixed geometry types. In this paper we present SPADE, a GPU-powered spatial database engine that supports a rich set of spatial queries. We discuss the challenges involved in attaining efficient query evaluation over large datasets as well as portability across different GPU hardware, and how these are addressed in SPADE. We performed a detailed experimental evaluation to assess the effectiveness of the system for wide range of queries and datasets, and report results which show that SPADE is scalable and able to handle data larger than main-memory, and its performance on a laptop is on par with that other systems that require clusters or large-memory servers.

Local explainability methods -- those which seek to generate an explanation for each prediction -- are becoming increasingly prevalent due to the need for practitioners to rationalize their model outputs. However, comparing local explainability methods is difficult since they each generate outputs in various scales and dimensions. Furthermore, due to the stochastic nature of some explainability methods, it is possible for different runs of a method to produce contradictory explanations for a given observation. In this paper, we propose a topology-based framework to extract a simplified representation from a set of local explanations. We do so by first modeling the relationship between the explanation space and the model predictions as a scalar function. Then, we compute the topological skeleton of this function. This topological skeleton acts as a signature for such functions, which we use to compare different explanation methods. We demonstrate that our framework can not only reliably identify differences between explainability techniques but also provides stable representations. Then, we show how our framework can be used to identify appropriate parameters for local explainability methods. Our framework is simple, does not require complex optimizations, and can be broadly applied to most local explanation methods. We believe the practicality and versatility of our approach will help promote topology-based approaches as a tool for understanding and comparing explanation methods.

Exploring large virtual environments, such as cities, is a central task in several domains, such as gaming and urban planning. VR systems can greatly help this task by providing an immersive experience; however, a common issue with viewing and navigating a city in the traditional sense is that users can either obtain a local or a global view, but not both at the same time, requiring them to continuously switch between perspectives, losing context and distracting them from their analysis. In this paper, our goal is to allow users to navigate to points of interest without changing perspectives. To accomplish this, we design an intuitive navigation interface that takes advantage of the strong sense of spatial presence provided by VR. We supplement this interface with a perspective that warps the environment, called UrbanRama, based on a cylindrical projection, providing a mix of local and global views. The design of this interface was performed as an iterative process in collaboration with architects and urban planners. We conducted a qualitative and a quantitative pilot user study to evaluate UrbanRama and the results indicate the effectiveness of our system in reducing perspective changes, while ensuring that the warping doesn't affect distance and orientation perception., Comment: Video: https://www.youtube.com/watch?v=M8BFZnxq-Qg

Esports, despite its expanding interest, lacks fundamental sports analytics resources such as accessible data or proven and reproducible analytical frameworks. Even Counter-Strike: Global Offensive (CSGO), the second most popular esport, suffers from these problems. Thus, quantitative evaluation of CSGO players, a task important to teams, media, bettors and fans, is difficult. To address this, we introduce (1) a data model for CSGO with an open-source implementation; (2) a graph distance measure for defining distances in CSGO; and (3) a context-aware framework to value players' actions based on changes in their team's chances of winning. Using over 70 million in-game CSGO events, we demonstrate our framework's consistency and independence compared to existing valuation frameworks. We also provide use cases demonstrating high-impact play identification and uncertainty estimation., Comment: to be published in 2020 IEEE International Conference on Big Data

Spatial approximations have been traditionally used in spatial databases to accelerate the processing of complex geometric operations. However, approximations are typically only used in a first filtering step to determine a set of candidate spatial objects that may fulfill the query condition. To provide accurate results, the exact geometries of the candidate objects are tested against the query condition, which is typically an expensive operation. Nevertheless, many emerging applications (e.g., visualization tools) require interactive responses, while only needing approximate results. Besides, real-world geospatial data is inherently imprecise, which makes exact data processing unnecessary. Given the uncertainty associated with spatial data and the relaxed precision requirements of many applications, this vision paper advocates for approximate spatial data processing techniques that omit exact geometric tests and provide final answers solely on the basis of (fine-grained) approximations. Thanks to recent hardware advances, this vision can be realized today. Furthermore, our approximate techniques employ a distance-based error bound, i.e., a bound on the maximum spatial distance between false (or missing) and exact results which is crucial for meaningful analyses. This bound allows to control the precision of the approximation and trade accuracy for performance., Comment: 11th Annual Conference on Innovative Data Systems Research (CIDR'21)

Multidimensional Projection is a fundamental tool for high-dimensional data analytics and visualization. With very few exceptions, projection techniques are designed to map data from a high-dimensional space to a visual space so as to preserve some dissimilarity (similarity) measure, such as the Euclidean distance for example. In fact, although adopting distinct mathematical formulations designed to favor different aspects of the data, most multidimensional projection methods strive to preserve dissimilarity measures that encapsulate geometric properties such as distances or the proximity relation between data objects. However, geometric relations are not the only interesting property to be preserved in a projection. For instance, the analysis of particular structures such as clusters and outliers could be more reliably performed if the mapping process gives some guarantee as to topological invariants such as connected components and loops. This paper introduces TopoMap, a novel projection technique which provides topological guarantees during the mapping process. In particular, the proposed method performs the mapping from a high-dimensional space to a visual space, while preserving the 0-dimensional persistence diagram of the Rips filtration of the high-dimensional data, ensuring that the filtrations generate the same connected components when applied to the original as well as projected data. The presented case studies show that the topological guarantee provided by TopoMap not only brings confidence to the visual analytic process but also can be used to assist in the assessment of other projection methods.

Urban planning is increasingly data driven, yet the challenge of designing with data at a city scale and remaining sensitive to the impact at a human scale is as important today as it was for Jane Jacobs. We address this challenge with Urban Mosaic,a tool for exploring the urban fabric through a spatially and temporally dense data set of 7.7 million street-level images from New York City, captured over the period of a year. Working in collaboration with professional practitioners, we use Urban Mosaic to investigate questions of accessibility and mobility, and preservation and retrofitting. In doing so, we demonstrate how tools such as this might provide a bridge between the city and the street, by supporting activities such as visual comparison of geographically distant neighborhoods,and temporal analysis of unfolding urban development., Comment: Video: https://www.youtube.com/watch?v=Nrhk7lb3GUo

The COVID-19 pandemic has transformed mobile health applications and telemedicine from nice to have tools into essential healthcare infrastructure. This need is particularly great for the elderly who, due to their greater risk for infection, may avoid medical facilities or be required to self-isolate. These are also the very groups at highest risk for cognitive decline. For example, during the COVID-19 pandemic artificially intelligent conversational agents were employed by hospitals and government agencies (such as the CDC) to field queries from patients about symptoms and treatments. Digital health tools also proved invaluable to provide neuropsychiatric and psychological self-help to people isolated at home or in retirement centers and nursing homes., Comment: 8 pages, 1 figure, figure added

The availability of low cost sensors has led to an unprecedented growth in the volume of spatial data. However, the time required to evaluate even simple spatial queries over large data sets greatly hampers our ability to interactively explore these data sets and extract actionable insights. Graphics Processing Units~(GPUs) are increasingly being used to speedup spatial queries. However, existing GPU-based solutions have two important drawbacks: they are often tightly coupled to the specific query types they target, making it hard to adapt them for other queries; and since their design is based on CPU-based approaches, it can be difficult to effectively utilize all the benefits provided by the GPU. As a first step towards making GPU spatial query processing mainstream, we propose a new model that represents spatial data as geometric objects and define an algebra consisting of GPU-friendly composable operators that operate over these objects. We demonstrate the expressiveness of the proposed algebra by formulating standard spatial queries as algebraic expressions. We also present a proof-of-concept prototype that supports a subset of the operators and show that it is at least two orders of magnitude faster than a CPU-based implementation. This performance gain is obtained both using a discrete Nvidia mobile GPU and the less powerful integrated GPUs common in commodity laptops., Comment: This is the extended version of the paper published in SIGMOD 2020

Significant progress has been made recently in developing few-shot object segmentation methods. Learning is shown to be successful in few-shot segmentation settings, using pixel-level, scribbles and bounding box supervision. This paper takes another approach, i.e., only requiring image-level label for few-shot object segmentation. We propose a novel multi-modal interaction module for few-shot object segmentation that utilizes a co-attention mechanism using both visual and word embedding. Our model using image-level labels achieves 4.8% improvement over previously proposed image-level few-shot object segmentation. It also outperforms state-of-the-art methods that use weak bounding box supervision on PASCAL-5i. Our results show that few-shot segmentation benefits from utilizing word embeddings, and that we are able to perform few-shot segmentation using stacked joint visual semantic processing with weak image-level labels. We further propose a novel setup, Temporal Object Segmentation for Few-shot Learning (TOSFL) for videos. TOSFL can be used on a variety of public video data such as Youtube-VOS, as demonstrated in both instance-level and category-level TOSFL experiments., Comment: Accepted to IJCAI'20. The first three authors listed contributed equally

Conventional few-shot object segmentation methods learn object segmentation from a few labelled support images with strongly labelled segmentation masks. Recent work has shown to perform on par with weaker levels of supervision in terms of scribbles and bounding boxes. However, there has been limited attention given to the problem of few-shot object segmentation with image-level supervision. We propose a novel multi-modal interaction module for few-shot object segmentation that utilizes a co-attention mechanism using both visual and word embeddings. It enables our model to achieve 5.1% improvement over previously proposed image-level few-shot object segmentation. Our method compares relatively close to the state of the art methods that use strong supervision, while ours use the least possible supervision. We further propose a novel setup for few-shot weakly supervised video object segmentation(VOS) that relies on image-level labels for the first frame. The proposed setup uses weak annotation unlike semi-supervised VOS setting that utilizes strongly labelled segmentation masks. The setup evaluates the effectiveness of generalizing to novel classes in the VOS setting. The setup splits the VOS data into multiple folds with different categories per fold. It provides a potential setup to evaluate how few-shot object segmentation methods can benefit from additional object poses, or object interactions that is not available in static frames as in PASCAL-5i benchmark.

The potential for machine learning to disrupt the medical profession is the subject of ongoing debate within biomedical informatics. This study aimed to explore psychiatrists' opinions about the potential impact of innovations in artificial intelligence and machine learning on psychiatric practice. In Spring 2019, we conducted a web-based survey of 791 psychiatrists from 22 countries worldwide. The survey measured opinions about the likelihood future technology would fully replace physicians in performing ten key psychiatric tasks. This study involved qualitative descriptive analysis of written response to three open-ended questions in the survey. Comments were classified into four major categories in relation to the impact of future technology on patient-psychiatric interactions, the quality of patient medical care, the profession of psychiatry, and health systems. Overwhelmingly, psychiatrists were skeptical that technology could fully replace human empathy. Many predicted that 'man and machine' would increasingly collaborate in undertaking clinical decisions, with mixed opinions about the benefits and harms of such an arrangement. Participants were optimistic that technology might improve efficiencies and access to care, and reduce costs. Ethical and regulatory considerations received limited attention. This study presents timely information of psychiatrists' view about the scope of artificial intelligence and machine learning on psychiatric practice. Psychiatrists expressed divergent views about the value and impact of future technology with worrying omissions about practice guidelines, and ethical and regulatory issues.

Futurists have predicted that new technologies, embedded with artificial intelligence (AI) and machine learning (ML), will lead to substantial job loss in many sectors disrupting many aspects of healthcare. Mental health appears ripe for such disruption given the global illness burden, stigma, and shortage of care providers. Using Sermo, a global networking platform open to verified and licensed physicians, we measured the opinions of psychiatrists about the likelihood that future autonomous technology (referred to as AI/ML) would be able to fully replace the average psychiatrist in performing 10 key tasks (e.g. mental status exam, suicidality assessment, treatment planning) carried out in mental health care. Survey respondents were 791 psychiatrists from 22 countries. Only 3.8% of respondents felt that AI/ML was likely to replace a human clinician for providing empathetic care. Documenting (e.g. updating medical records) and synthesizing information to reach a diagnosis were the two tasks where a majority predicted that future AI/ML would replace human doctors. About 1 in 2 doctors believed their jobs could be changed substantially by future AI/ML. However, female and US-based doctors were more uncertain that the possible benefits of AI would outweigh potential risks, versus their male and global counterparts. To our knowledge, this is the first global survey to seek the opinions of physicians on the impact of autonomous AI/ML on the future of psychiatry. Our findings provide compelling insights into how physicians think about intelligent technologies which may better help us integrate such tools and reskill doctors, as needed, to enhance mental health care., Comment: 30 pages, 7 tables, 6 figures

Large scale shadows from buildings in a city play an important role in determining the environmental quality of public spaces. They can be both beneficial, such as for pedestrians during summer, and detrimental, by impacting vegetation and by blocking direct sunlight. Determining the effects of shadows requires the accumulation of shadows over time across different periods in a year. In this paper, we propose a simple yet efficient class of approach that uses the properties of sun movement to track the changing position of shadows within a fixed time interval. We use this approach to extend two commonly used shadowing techniques, shadow maps and ray tracing, and demonstrate the efficiency of our approach. Our technique is used to develop an interactive visual analysis system, Shadow Profiler, targeted at city planners and architects that allows them to test the impact of shadows for different development scenarios. We validate the usefulness of this system through case studies set in Manhattan, a dense borough of New York City., Comment: Video: https://www.youtube.com/watch?v=LsZv23d1LyM, Data: https://github.com/ViDA-NYU/shadow-accrual-maps

The ScanAllFish project is a large-scale effort to scan all the world's 33,100 known species of fishes. It has already generated thousands of volumetric CT scans of fish species which are available on open access platforms such as the Open Science Framework. To achieve a scanning rate required for a project of this magnitude, many specimens are grouped together into a single tube and scanned all at once. The resulting data contain many fish which are often bent and twisted to fit into the scanner. Our system, Unwind, is a novel interactive visualization and processing tool which extracts, unbends, and untwists volumetric images of fish with minimal user interaction. Our approach enables scientists to interactively unwarp these volumes to remove the undesired torque and bending using a piecewise-linear skeleton extracted by averaging isosurfaces of a harmonic function connecting the head and tail of each fish. The result is a volumetric dataset of a individual, straight fish in a canonical pose defined by the marine biologist expert user. We have developed Unwind in collaboration with a team of marine biologists: Our system has been deployed in their labs, and is presently being used for dataset construction, biomechanical analysis, and the generation of figures for scientific publication.