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Many efforts have been made to enhance rice photosynthesis for higher grain yields, although such knowledge has seldom been integrated into rice breeding programs. In this review, I first address the limitations and challenges of the theory that yield is controlled by photosynthesis, a concept rooted in the fact that carbon forms a significant part of plant mass, with photosynthesis acting as the fundamental pathway for carbon assimilation. Subsequently, the discussion covers photosynthesis indices, their measurement techniques, and the challenges in establishing correlations between photosynthesis indices and yields. The review then delves into recent advancements, including leveraging natural variations, enhancing the electron transport chain, augmenting the efficiency of ribulose bisphosphate carboxylase/oxygenase (Rubisco), increasing CO2 concentration around Rubisco, initiatives like the C4 rice project, strategies for photorespiration bypass, and non-leaf photosynthesis contributions. The conclusion emphasizes future research directions such as advocating for the incorporation of photosynthesis within broader organismic processes, unraveling the complex link between photosynthesis and grain yield, developing efficient and direct methods for photosynthesis phenotyping, and assessing photosynthetic performance under actual field conditions.

Research indicates that, owing to the enhanced grain-filling rate of tetraploid rice, its yield has notably improved compared to previous levels. Studies conducted on diploid rice have revealed that optimal planting density and fertilization rates play crucial roles in regulating rice yield. In this study, we investigated the effects of different nitrogen application and planting density treatments on the growth, development, yield, and nitrogen utilization in tetraploid (represented by T7, an indica–japonica conventional allotetraploid rice) and diploid rice (Fengliangyou-4, represented by FLY4, a two-line super hybrid rice used as a reference variety for the approval of super rice with a good grain yield performance). The results indicated that the highest grain-filling rate of T7 could reach 77.8% under field experimental conditions due to advancements in tetraploid rice breeding. This is a significant improvement compared with the rate seen in previous research. Under the same conditions, T7 exhibited a significantly lower grain yield than FLY4, which could be attributed to its lower grain-filling rate, spikelets per panicle, panicle number m−2, and harvest index score. Nitrogen application and planting density displayed little effect on the grain yield of both genotypes. A higher planting density significantly enhanced the leaf area index and biomass accumulation, but decreased the harvest index score. Compared with T7, FLY4 exhibited a significantly higher nitrogen use efficiency (NUEg), which was mainly due to the higher nitrogen content in the straw. Increasing nitrogen application significantly decreased NUEg due to its minimal effect on grain yield combined with its significant enhancement of nitrogen uptake. Our results suggest that the yield and grain-filling rate of T7 have been improved compared with those of previously tested polyploid rice, but are still lower than those of FLY4, and the yield of tetraploid rice can be further improved by enhancing the grain-filling rate, panicle number m−2, and spikelets per panicle via genotype improvement.

Photosynthetic induction and stomatal kinetics are acknowledged as pivotal factors in regulating both plant growth and water use efficiency under fluctuating light conditions. However, the considerable variability in methodologies and light regimes used to assess the dynamics of photosynthesis (A) and stomatal conductance (gs) during light induction across studies poses challenges for comparison across species. Moreover, the influence of stomatal morphology on both steady-state and non-steady-state gs remains poorly understood. In this study, we show the strong impact of IRGA Chamber Illumination and Whole Plant Illumination on the photosynthetic induction of two rice species. Our findings reveal that these illuminations significantly enhance photosynthetic induction by modulating both stomatal and biochemical processes. Moreover, we observed that a higher density of smaller stomata plays a critical role in enhancing the stomatal opening and photosynthetic induction to fluctuating light conditions, although it exerts minimal influence on steady-state gs and A under constant light conditions. Therefore, future studies aiming to estimate photosynthetic induction and stomatal kinetics should consider the light environments at both the leaf and whole plant levels.

To achieve the goal in the Paris Agreement of limiting mean global temperature rise to 1.5 ​°C, total anthropogenic radiative forcing (RF) should be reduced from current 2.7 to around 1.9 ​W ​m−2. A newly developed RF-based climate footprint (RFCF) indicator, which quantifies the additional contribution to RF associated with current and historical emissions, can support transparent alignment with climate stabilization targets by assessing the profile of RF over time. Nevertheless, RFCF applications to date have been based on parameters and equations from IPCC 5th Assessment Report (AR). Considering the latest updates in the IPCC 6th AR, we applied the RFCF approach for the first time in a case study involving the Australian agricultural sector. We compared the RF, RFCF and annual changes in RFCF of CH4, N2O and CO2 using both models. All the results of RF as well as RFCF calculated using the latest model were slightly lower than those obtained using the former model. The agricultural sector's contribution to RF had plateaued in recent years and is projected to reach the point of net zero increase in 2022 (IPCC 6th AR model) or 2023 (IPCC 5th AR model). Considering the latest updates in emission lifetime, radiative efficiency and indirect effects based on the background concentration (1750–2019), the assessments based on IPCC 6th AR model provide more reliable results. However, a dynamic model is required to reflect the additional RF for the pulse emission based on the relevant climate background in the same year. The RF-based footprint approach can support national greenhouse gas emission reduction policy targets, especially for sectors with substantial biogenic methane emissions.

Chlorophyll content and fluorescence parameters are crucial indicators to evaluate the light use efficiency in rice; however, the correlations among these parameters and the underlying genetic mechanisms remain poorly understood. Here, to clarify these issues, we conducted a genome-wide association study (GWAS) on 225 rice accessions. In the phenotypic and Mendelian randomization (MR) analysis, a weak negative correlation was observed between the chlorophyll content and actual quantum yield of photosystem II (ΦII). The phenotypic diversity observed in SPAD, NPQt, ΦNPQ, and Fv/Fm among accessions was affected by genetic background. Furthermore, the GWAS identified 78 SNPs and 17 candidate genes significantly associated with SPAD, NPQt, ΦII, ΦNPQ, qL and qP. Combining GWAS on 225 rice accessions with transcriptome analysis of two varieties exhibiting distinct fluorescence characteristics revealed two potential candidate genes (Os03g0583000 from ΦII & qP traits and Os06g0587200 from NPQt trait), which are respectively associated with peroxisomes, and protein kinase catalytic domains might involve in regulating the chlorophyll content and chlorophyll fluorescence. This study provides novel insights into the correlation among chlorophyll content and fluorescence parameters and the genetic mechanisms in rice, and offers valuable information for the breeding of rice with enhanced photosynthetic efficiency.

Rice plays a vital role in global food security, and its yield needs to be increased to meet escalating demand. Although many high yield quantitative trait loci (QTLs) have been identified in the last decades, rice grain yield in the main rice-producing countries is stagnating. By summarizing the yield performance of high-yielding QTL lines, we highlighted that almost all the high-yielding QTL introduced lines had no practical usage in current high yield breeding programs, mainly due to their low absolute grain yield. Further analysis showed that scientists primarily focused on spikelet number per panicle alone rather than other yield traits, and, in most of the studies, the yield increase was referenced to very old cultivars. By analyzing the yield traits correlations across cultivars in both field and pot conditions and different eco-sites using the same cultivars, we emphasized that the rice high yield will be rarely achieved by using single trait approaches due to the counteracting effects of yield components. Finally, several recommendations are provided to the next generation of biotechnological breeding in rice.

Highlights The influences of measurement setup, environmental factors, and steady state identification on leaf hydraulic conductance measurement were estimated and reporting format of K leaf were proposed.

Plants are often confronted with light fluctuations from seconds to minutes due to altering sun angles, mutual shading, and clouds under natural conditions, which causes a massive carbon loss and water waste. The effect of stomatal morphology on the response of leaf gas exchange to fluctuating light remains disputable. In this study, we investigated the differences in leaf stomatal morphology and photosynthetic induction across twelve rice genotypes after a stepwise increase in light intensity. A negative correlation was observed between stomatal size and density across rice genotypes. Smaller and denser stomata contributed to a faster stomatal response under fluctuating light. Plants with faster stomatal opening also showed faster photosynthetic induction and higher biomass accumulation but lower intrinsic water use efficiency (iWUE) under fluctuating light. Moreover, stomatal morphology seemed to have less effect on the initial and final stomatal conductance, and there was a minimal correlation between steady-state and non-steady-state stomatal conductance among different rice genotypes. These results highlight the important role of stomatal morphology in regulating photosynthetic efficiency and plant growth under fluctuating light conditions. To simultaneously enhance leaf iWUE when improving the photosynthetic efficiency under fluctuating light, it may be necessary to take biochemical processes into account in the future.

Stomata control carbon and water exchange between the leaves and the ambient. However, the plasticity responses of stomatal traits to growth conditions are still unclear, especially for monocot leaves. The current study investigated the leaf anatomical traits, stomatal morphological traits on both adaxial and abaxial leaf surfaces, and photosynthetic traits of Oryza leaves developed in two different growth conditions. Substantial variation exists across the Oryza species in leaf anatomy, stomatal traits, photosynthetic rate, and stomatal conductance. The abaxial stomatal density was higher than the adaxial stomatal density in all the species, and the stomatal ratios ranged from 0.35 to 0.46 across species in two growth environments. However, no difference in the stomatal ratio was observed between plants in the growth chamber and outdoors for a given species. Photosynthetic capacity, stomatal conductance, leaf width, major vein thickness, minor vein thickness, inter-vein distance, and stomatal pore width values for leaves grown outdoors were higher than those for plants grown in the growth chamber. Our results indicate that a broad set of leaf anatomical, stomatal, and photosynthetic traits of Oryza tend to shift together during plasticity to diverse growing conditions, but the previously projected sensitive trait, stomatal ratio, does not shape growth conditions.

Manipulating the photoprotective mechanism has been demonstrated to be an effective way to enhance the photosynthetic productivity of crop plants. NPQ(T) is a chlorophyll fluorescence parameter for rapid estimation and imaging of non-photochemical quenching (NPQ) of excitons in the photoprotective mechanism. However, the variation and genetic basis of NPQ(T) are rarely reported in the Oryza sativa L. In this study, we collected 173 rice cultivars and investigated the NPQ(T) value. We found that the NPQ(T) has a wide variation, although it had not been under-selected in the different subspecies. A genome-wide association study (GWAS) utilizing 1,566,981 high-quality SNPs identified three significant associated signals on chromosomes 02, 05, and 07. Furthermore, one likely candidate gene Os02g0184100, underlying the associated signal on chromosome 02, was uncovered by identifying the expression pattern in flag leaves and testing the correlation between functional polymorphisms and phenotypic variation. The significant SNPs and candidate genes identified in this study provide us a comprehensive understanding of the genetic architecture of NPQ(T) and could be used for genetic improvement of rice photoprotection.

Abstract Background Over the past decades, the structural and functional genomics of rice have been deeply studied, and high density of molecular genetic markers have been developed. However, the genetic variation in leaf photosynthesis, the most important trait for rice yield improvement, was rarely studied. The lack of photosynthesis phenotyping tools is one of the bottlenecks, as traditional direct photosynthesis measurements are very low-throughput, and recently developed high-throughput methods are indirect measurements. Hence, there is an urgent need for a fast, accurate and direct measurement approach. Result We reported a fast photosynthesis measurement (FPM) method for phenotyping photosynthetic capacity of rice, which measures photosynthesis of excised tillers in environment-controlled lab conditions. The light response curves measured using FPM approach coped well with that the curves measured using traditional gas exchange approach. Importantly, the FPM technique achieved an average throughput of 5.4 light response curves per hour, which was 3 times faster than the 1.8 light response curves per hour using the traditional method. Tillers sampled at early morning had the highest photosynthesis, stomatal conductance and the lowest variability. In addition, even 12 h after sampling, there was no significant difference of photosynthesis rate between excised tillers and in situ. We finally investigated the genetic variations of photosynthetic traits across 568 F2 lines using the FPM technique and discussed the logistics of screening several hundred samples per day per instrumental unit using FPM to generate a wealth of photosynthetic phenotypic data, which might help to improve the selection power in large populations of rice with the ultimate aim of improving yield through improved photosynthesis. Conclusions Here we developed a high-throughput method that can measure the rice leaf photosynthetic capacity approximately 10 times faster than traditional gas exchange approaches. Importantly, this method can overcome measurement errors caused by environmental heterogeneity under field conditions, and it is possible to measure 12 or more hours per day under lab conditions.

Energy saving and system reliability are two crucial issues for designing modern multiprocessor systems. There has been reliability-aware power management with dynamic voltage-frequency scaling (DVFS) schemes in recent studies. However, they are limited to optimization under the impact of DVFS on energy and reliability and have not considered reducing the non-negligible leakage energy consumption. In this paper, we focus on co-management of system reliability and total energy for applications with precedence constrained tasks on heterogeneous multiprocessor real-time systems. We first investigate the impact of energy management techniques on both reliability and energy of the systems using task recovery for fault tolerance and then propose an Energy-efficient Fault-tolerant Scheduling (EFS) scheme integrated with power mode management, which can mitigate the negative impact of DVFS on system reliability. To obtain the optimal energy-efficient reliability-guaranteed scheduling for pre-mapped applications on systems considering various realistic issues, we build mixed integer linear programing formulations with the proposed EFS scheme. To address mapping and scheduling for energy-efficiency and fault-tolerance, we finally develop a framework implemented by a List-based Binary Particle Swarm Optimization algorithm. The extensive comparative evaluations for synthetic and realistic benchmarks show that our approaches outperform several related studies in terms of energy consumption and system reliability.

Abstract The photosynthetic, biochemical, and anatomical traits of accumulation and replication of chloroplasts (arc) mutants of Arabidopsis thaliana were investigated to study the effects of chloroplast size and number on photosynthesis. Chloroplasts were found to be significantly larger, and the chloroplast surface area exposed to intercellular air spaces (S c) significantly lower in the mutants than in their wild-types. The decreased S c and increase cytoplasm thickness in the mutants resulted in a lower mesophyll conductance (g m) and a consequently lower chloroplast CO2 concentration (C c). There were no significant differences between the mutants and their wild-types in maximal carboxylation rate (V cmax), maximal electron transport (J cmax), and leaf soluble proteins. Leaf nitrogen (N) and Rubisco content were similar in both Wassilewskija (Ws) wild-type (Ws-WT) and the Ws mutant (arc 8), whereas they were slightly higher in Columbia (Col) wild-type (Col-WT) than the Col mutant (arc 12). The photosynthetic rate (A) and photosynthetic N use efficiency (PNUE) were significantly lower in the mutants than their wild-types. The mutants showed similar A/C c responses as their wild-type counterparts, but A at given C c was higher in Col and its mutant than in Ws and its mutant. From these results, we conclude that decreases in g m and C c are crucial to the reduction in A in arc mutants.

Conventional transplanted rice (TPR) has been increasingly replaced by direct-seeded rice (DSR) because of its low water and labour requirements. Whether and how DSR can be as productive as TPR has received widespread attention. Here, a comprehensive meta-analysis was performed to quantify the effects of direct seeding on rice yield and identify the management and environmental factors that contribute to the yield gap between DSR and TPR. The results showed that, overall, the yield of DSR was 12% lower than that of TPR. However, the yield loss of DSR relative to TPR was highly variable depending on management practices, soil type, and climate conditions, ranging from −2% to −42%. Weed and water management and climatic stress had the largest impact on yield performance, resulting in over 15% yield variation. With respect to soil properties, the yield gap can be significantly reduced by planting in areas with high organic carbon content, such as clayed and acidic soils. Furthermore, the DSR yield penalty was only 4% in a high-yielding condition compared to 14% in a low-yielding condition. All these factors indicate that optimizing management practices is necessary to improve DSR yield performance and narrow the yield gap between DSR and TPR. In conclusion, DSR could produce comparable yields to TPR but is more prone to yield losses due to inappropriate management practices, unsuitable soil properties, and climatic stresses.

Vein severing in plants caused by leaf damage is common in fields where crops are cultivated. It is hypothesized that leaves with complex reticulate venation can withstand hydraulic disturbances caused by vein severing, thereby preserving leaf carbon assimilation. However, limited research focuses on vein damage of leaves with parallel venation. We studied how vein-severing affected the photosynthetic traits of rice (Oryza sativa) leaves in seconds, minutes and days, under varying water-demand conditions and differing extents of water supply disruption. Rice leaves completely lost their photosynthetic capacity within 2.5 minutes after excision. Severing the midrib resulted in reduced light-saturated photosynthetic rate (A), stomatal conductance (gsw) and transpiration rate (E) by 2.6, 6.8 and 5.9%, respectively, already after thirty minutes. We further investigated the photosynthetic trait responses to various extents of leaf width severing, while keeping the midrib functional. Surprisingly, A, gsw and E in the downstream area of the severed leaves largely remained stable, showing minimal variation across different leaf width severing ratios. These traits declined only slightly even under increased ambient light intensity and leaf-to-air vapor pressure deficit. This sustained photosynthesis post-severing is attributed to the efficient lateral water transport. Long-term leaf damage slightly but not significantly, impacted the downstream photosynthetic traits within five days postsevering. However, a more pronounced reduction in gas exchange during leaf senescence was observed nine days after severing. These findings suggested that rice leaves can tolerate hydraulic disturbances from vein severing and maintain functionality under various conditions, which is crucial for crop yield stability. However, long-term consequences require further investigation. [ABSTRACT FROM AUTHOR]

Leaf rolling is a physiological response to drought that may help to reduce water loss, but its significance as a contribution to drought tolerance is uncertain. We scored the leaf rolling of four rice genotypes along an experimental drought gradient using an improved cryo-microscopy method. Leaf water potential (Ψleaf), gas exchange, chlorophyll fluorescence, leaf hydraulic conductance, rehydration capacity, and the bulk turgor loss point were also analysed. During the drought process, stomatal conductance declined sharply to reduce water loss, and leaves rolled up before the stomata completely closed. The leaf water loss rate of rolled leaves was significantly reduced compared with artificially flattened leaves. The Ψleaf threshold of initial leaf rolling ranged from −1.95 to −1.04 MPa across genotypes. When a leaf rolled so that the leaf edges were touching, photosynthetic rate and stomatal conductance declined more than 80%. Across genotypes, leaf hydraulic conductance declined first, followed by gas exchange and chlorophyll fluorescence parameters. However, the Ψleaf threshold for a given functional trait decline differed significantly among genotypes, with the exception of leaf hydraulic conductance. Our results suggested that leaf rolling was mechanistically linked to drought avoidance and tolerance traits and might serve as a useful phenotypic trait for rice breeding in future drought scenarios. [ABSTRACT FROM AUTHOR]