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This study found significant differences between the standard length distributions of humpback and redfin culter and between Mongolian culter and topmouth culter. A stable isotope analysis (δ13C and δ15N) was used to investigate the interspecies differences between the feeding habits and trophic niches of four carnivorous species of Cultrinae fish. The results showed that the δ13C and δ15N values were significantly correlated with the standard length and species. However, the δ13C values of humpback and redfin culter were not significantly different, suggesting that these two fish species had similar food sources. The δ15N values of Mongolian culter and topmouth culter were the highest, suggesting that they occupied a higher trophic level and that animal prey was more important in their diets. Moreover, variations in δ13C and δ15N indicated considerable niche overlap and interspecific competition among the four species. We also evaluated trophic niches, diversity, redundancy, and evenness utilizing isotopic niche metrics, and we estimated asymmetrical niche overlaps. The analysis revealed that four carnivorous species of Cultrinae displayed similar trophic niche sizes and trophic diversity. The trophic traits of topmouth culter clearly defined them as a trophic generalist in terms of the inter-individual variability in their isotopic niches. A significant finding was that the average niche overlap between them was as high as 64.02%; topmouth culter had the greatest trophic overlap with redfin culter (95.52%) and humpback (90.38%), followed by Mongolian culter onto redfin culter (85.32%), indicating that topmouth culter and Mongolian culter benefit the most from the food supply in the habitat, or they are more competitive in the presence of limited resources.

The spatial distribution of fish individuals is affected by habitat conditions and species ecological characteristics, and it also reflects the longtime adaptation to habitat at the phenotypic and genotypic level. As a typical river-lake migratory fish species, the silver carp habitat selection was determined by its migration preference and genetic features. In this study, 15 microsatellite fluorescent markers combined with capillary electrophoresis were used to analyze the genetic diversity, genetic differentiation, and structure of nature silver carp populations in the Sanzhou (SZ), Hukou (HK), Anqing (AQ), Zhenjiang (ZJ), and Rugao (RG) sections of the Yangtze River. The results showed that 15 microsatellite loci exhibited medium to high polymorphisms. The overall genetic diversity in the Yangtze River was high, with the average value of Shannon’s information index ranging from 1.559 to 1.668. The numbers of alleles (Ne) ranged from 1.630 to 10.100. The expected heterozygosity (He, 0.690–0.721) was higher than observed heterozygosity (Ho, 0.598–0.646), and the genetic variation mainly originated from within the population (94.69%). However, the entire population was in the state of heterozygous deletion, and HK, RG populations encountered the risk of inbreeding risk (F > 1). Interestingly, there was a distinct genetic structure for the population in the HK section, which indicated that local population has occurred to the silver carp in this river section, and they may also possess aggregation characteristics specific to the river-lake-connected (RLC) habitat. The results mostly support the conclusion that the RLC habitat is essential for geographic population formation. The potential impact of special habitats on natural populations should be considered, and continuous surveys on population dynamics should be performed.

The global climate and environmental variability can induce fish adaptive strategy change and form a corresponding complementary mechanism subsequently. Because of climate fluctuation, human activities, and water conservancy projects, it has been reported that natural fish resources of the silver carp have been declining in a wavy trend from 1950. However, few studies have explored the potential effects of determining the relationship between the adult fish and fish larvae. Using the field survey method, this study analyzed the fisheries resource status of the adult silver carp and its early life stage in the Yangtze River. Results indicated that different geographic populations showed significant habitat dependence, and the adult silver carp tends to choose habitats with slow water flow, rich biological bait, and less human interference. What is more, its distribution pattern has regional and seasonal differences obviously. Additionally, redundancy analysis on the fish larvae showed that water temperature and water flow are the two most important factors influencing the fish larvae blooming. According to the generalized additive model (GAM), the hydrological factors that significantly influence the larvae abundance are water temperature, transparency, daily increasing rate of water level, and discharge (p < 0.05). Combining the historical and present research data, the results indicated that river and lake connected habitat is essential for the silver carp recruitment and migration. Future studies should focus on the complementary mechanism of silver carp both in the natural habitat and invasion waters. It is suggested that the spawning habitat should be well protected during the channel project and economic belt construction along the Yangtze River.

Estuary river–lake (ERL) complex is critical for the development of ichthyoplankton, which plays an essential role in the breeding, nursing, and recruitment of freshwater fish species. In this study, different ERL sections were selected to investigate the ichthyoplankton assemblage from the Changjiang River estuary to its Hukou section between May 2018 and August 2020. During the study period, fish larvae of 40, 35, 54, and 46 fish species were sampled in the Rugao (RG), Nanjing (NJ) (nearby estuary), Anqing (AQ), and Hukou (HK) (connected river–lake) sections in the Changjiang River, respectively. Results on ichthyoplankton surveys revealed fluctuating assemblage patterns in the different river sections; larval fish species composition presented ecological habitat-dependent characteristics, which supported the importance of ERL complex for ichthyoplankton development. Furthermore, the density of fish larvae was negatively correlated with water transparency but positively correlated with water temperature, the daily rate of water level increase, and runoff in the limitative range. A generalized additive model analysis indicated that the hydrological factors significantly affecting larval fish abundance are water temperature, transparency, the daily rate of water level increase, and runoff (p < 0.05). These results also indicated that river estuaries and river–lake connected complexes are essential for ichthyoplankton recruitment and migration. In combination with the historical record, ichthyoplankton assemblage’s patterns in the Changjiang River lower reaches were preliminarily elucidated, although additional works are needed such as assessing effects on their survival and recruitment.

Both fish gills and guts can support lots of microbiota that play important roles in the health and growth of hosts. Although the microbiota of silver carp has been widely studied, the data on microbial variation according to fish tissues and local habitats are lacking. In this study, the microbes in the guts and gills of silver carp (Hypophthalmichthys molitrix) from the hydrophyte-dominated region (zone H) and the algae-dominated region (zone A) of Taihu Lake in autumn were analyzed. Proteobacteria, Cyanobacteria, and Firmicutes were the dominant bacteria in silver carp. The microbial diversity was higher in the gills than that in the intestines, and higher in fish from zone H than that from zone A. Beta diversity analysis revealed significant differences in microbial community structures between gill and guts, and between fish from the two habitats. Gills had a higher abundance of phyla Actinobacteria, Bacteroidetes, and Deinococcus-Thermus, and a lower abundance of verrucomicrobia than the intestine. Both tissues possessed indicator taxa, while many indicator taxa in the gill were conditional pathogens. Compared to fish from zone H, fish from zone A had more abundant Cyanobacteria, and less abundant Proteobacteria and Bacteroidetes. PICRUSt2 analysis revealed that fish microbial functions were mainly associated with metabolism, replication, repair, folding, sorting, and degradation. These results showed that the microbial community of silver carp from Taihu Lake varied according to tissues and habitats.

The Yangtze finless porpoise (Neophocaena asiaeorientalis) is the sole freshwater subspecies of Neophocaenaphocaenoides, and there is a lack of data on its transcriptome. In this study, we applied RNA-seq technology to assemble, de novo, a transcriptome and analyzed differential expressed genes (DEGs). About 6 Gb of clean data was generated for the Yangtze finless porpoise blood (n = 6) through de novo sequencing. In total, 151,211 unigenes were generated and a total of 119,039 of these unigenes (78.72%) were functionally annotated when searched for within the NCBI Nr, SwissProt, GO, COG, and KEGG databases. Diverse and extensive expressed gene catalogs were sampled for the Yangtze finless porpoise. DESeq2 was used to analyze the differential expression genes (DEGs) obtained from the assembled transcriptome. The results indicated that DEGs have close relationships with the Yangtze finless porpoise’s development, evolution and adaptation. Further, we found that genes involved in cetacean TAG synthesis might directly explain the molecular basis of cetacean blubber thickening. These transcriptome data will assist in understanding molecular mechanisms of Yangtze finless porpoise adaptation.

Phenanthrene (Phe) is a model compound in polycyclic aromatic hydrocarbon (PAH) research. Reportedly, Phe treatment induced oxidative stress and histological disorders to Takifugu obscurus liver. In this study, to further explore the molecular responses of T. obscurus liver to Phe exposure, transcriptome sequencing was applied to compare mRNA transcription profiles between Phe treatment and the control. Compared with the control, 1,581 and 1,428 genes were significantly upregulated and downregulated in Phe treatment, respectively. Further analysis revealed that Phe treatment mainly upregulated genes in Ras-MAPK and PI3K-akt signaling pathways, which represented insulin resistance and further activated the FOXO signaling pathway. The triacylglycerol biosynthesis was promoted but the gluconeogenesis process was inhibited in response to Phe treatment, demonstrating that Phe exposure disturbed the sugar and lipid metabolism. Moreover, Phe treatment upregulated the Apelin-APJ and ErbB signaling pathways, promoting angiogenesis in T. obscurus liver. Insulin resistance, promoted triacylglycerol biosynthesis, and angiogenesis might explain the molecular mechanisms underlying carcinogenic toxicity of Phe. Overall, this study provides new insights to understand the environmental risk of Phe to fishes. [ABSTRACT FROM AUTHOR]

Heat shock protein 60 (HSP60) and heat shock protein 10 (HSP10) are important chaperones, which have been proven to have essential roles in mediating the correct folding of nuclear encoded proteins imported to mitochondria. Mitochondria are known as the power house of the cell, with which it produces energy and respires aerobically. In this regard, the obtained HSP60 and HSP10 have typical characteristics of the HSP60/10 family signature. Their mRNA transcripts detected were highest during the developmental phase (in April), while the lowest levels were found in the resting phase (after spawning in late July). Additionally, the strongest immunolabeling positive signals were found in the primary spermatocyte, with lower positive staining in secondary sperm cells, and a weak or absent level in the mature sperm. At the electron microscopic level, immunogold particles were localized in the mitochondrial matrix. Data indicated that HSP10 and HSP60 were inducible and functional in the Coilia nasus testis development and migration process, suggesting their essential roles in this process. The results also indicated that HSP60 may be one indicator of properly working mitochondrial import and refolding in the fish testis. This study also provides an expanded perspective on the role of heat shock protein families in spawning migration biology. [ABSTRACT FROM AUTHOR]

Background: An increase in the activity of the pituitary-gonad axis (PG-axis) and gonad development are essential for the onset of spawning migration in teleosts. In the fish Coilia nasus, gonad development and spawning migration up the Yangtze River occurs by the end of each summer. We hypothesized that gonadotropin releasing hormones receptor 2 (GnRH-R2), which together produce a signal that interacts with the PG-axis, may help to regulate spawning migration processes. Results: In this regard, we (1) characterized the gonadosomatic index (GSI) in the anadromous fish C. nasus; (2) analyzed the GnRH-R2 mRNA expression levels in ovary and brain, and concentrations in the serum; and (3) identified the GnRH-R2 protein distribution in the brain and ovaries. We found strong relationships between all of these indices. Conclusions: The results indicate that GnRH-R2 could act together to promote spawning during the anadromous migration. There is some evidence that the GnRH-R2 gene expression levels and protein distributions change in association with the migratory behavior. [ABSTRACT FROM AUTHOR]

Heat shock proteins play essential roles in basic cellular events. Spawning migration is a complex process, with significant structural and biochemical changes taking place in the adult gonad. To date, the molecular mechanisms underlying migration reproductive biology remain undetermined. In this regard, a full length HSP90AA1 comprising 2608 nucleotides from the anadromous fish Coilia nasus was characterized, encoding 742 amino acid (aa) residues with potential phosphorylation sites. HSP90AA1 mRNA transcripts were detected in all organs, especially in the gonad. Furthermore, the greatest transcript levels were found during the developmental phase, while the lowest levels were found during the resting phase. In addition, the strongest immunolabeling positive signal was found in the primary spermatocyte and oocyte, with lower positive staining in secondary germ cells, and a weak or absent level in the mature sperm and oocyte. Interestingly, HSP90AA1 was mainly located in the cytoplasm of germ cells. These results are important for understanding the molecular mechanism of anadromous migration reproductive biology. In combination with data from other fish species, the result of this present study may facilitate further investigations on the spawning migration mechanism. [ABSTRACT FROM AUTHOR]

The gradient method for training Elman networks with a finite training sample set is considered. Monotonicity of the error function in the iteration is shown. Weak and strong convergence results are proved, indicating that the gradient of the error function goes to zero and the weight sequence goes to a fixed point, respectively. A numerical example is given to support the theoretical findings. [ABSTRACT FROM AUTHOR]