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5. A chromosome-level genome assembly and evolutionary analysis of Coregonus ussuriensis Berg.

Author

Huang, Tianqing, Liu, Enhui, Cao, Baorui, Li, Wenwen, Wang, Gaochao, Gu, Wei, Ma, Haibing, Dong, Fulin, Wang, Bingqian, and Xu, Gefeng

Subjects
OVERFISHING, CHROMOSOMES, LATITUDE, WHITEFISHES, FRESH water, GENES, FRESHWATER biodiversity
Abstract

Coregonus ussuriensis Berg, distributed widely in cold waters above 45° N latitude, is a savored freshwater whitefish that has been included in the list of endangered animals as a consequence of overfishing. Lack of genomic information seriously hampers evolutionary and genetic research on C. ussuriensis warranting the need to assemble a high-quality reference genome to promote its genetic breeding. We assembled and constructed a reference chromosome-level C. ussuriensis genome (sequence length, 2.51 Gb; contig N50 length, 4.27 Mb) using PacBio sequencing and Hi-C assembly technology, 3,109 contigs were assembled into scaffolds, resulting in a genome assembly with 40 chromosomes and a scaffold N50 length of 62.20 Mb. In addition, 43,320 protein-coding genes were annotated. The peak Ks position in the species comparison reflects the whole-genome replication event of C. ussuriensis. This chromosome-level genome provides reference data for further studies on the molecular breeding of C. ussuriensis. [ABSTRACT FROM AUTHOR]

Published
2024
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8. miR-301b-5p and its target gene nfatc2ip regulate inflammatory responses in the liver of rainbow trout (Oncorhynchus mykiss) under high temperature stress

Author

Huang, Tianqing, primary, Gu, Wei, additional, Liu, Enhui, additional, Wang, Bingqian, additional, Wang, Gaochao, additional, Dong, Fulin, additional, Guo, Fuyuan, additional, Jiao, Wenlong, additional, Sun, Yanchun, additional, Wang, Xiance, additional, Li, Shanwei, additional, and Xu, Gefeng, additional

Published
2022
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10. Molecular characterization and antibacterial immunity functional analysis of the antimicrobial peptide hepcidin from Coregonus ussuriensis berg

Author

Liu, Enhui, primary, Huang, Tianqing, additional, Gu, Wei, additional, Wang, Gaochao, additional, Dong, Fulin, additional, Ma, Haibing, additional, Zhang, Lanlan, additional, He, Xianchen, additional, Yao, Zuochun, additional, Jiao, Wenlong, additional, Li, Chunyu, additional, Wang, Bingqian, additional, and Xu, Gefeng, additional

Published
2022
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