110,127 results on '"Donald, J."'
Search Results
2. Elevated C-Reactive Protein in Older Men With Chronic Pain: Association With Plasma Amyloid Levels and Hippocampal Volume
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Bell, Tyler R, Franz, Carol E, Thomas, Kelsey R, Williams, McKenna E, Eyler, Lisa T, Lerman, Imanuel, Fennema-Notestine, Christine, Puckett, Olivia K, Dorros, Stephen M, Panizzon, Matthew S, Pearce, Rahul C, Hagler, Donald J, Lyons, Michael J, Elman, Jeremy A, and Kremen, William S
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Biomedical and Clinical Sciences ,Clinical Sciences ,Aging ,Chronic Pain ,Neurosciences ,Brain Disorders ,Neurodegenerative ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Alzheimer's Disease ,Pain Research ,Dementia ,Acquired Cognitive Impairment ,2.1 Biological and endogenous factors ,Neurological ,Humans ,Male ,Hippocampus ,C-Reactive Protein ,Aged ,Amyloid beta-Peptides ,Biomarkers ,Middle Aged ,Magnetic Resonance Imaging ,tau Proteins ,Alzheimer Disease ,Neurofilament Proteins ,Organ Size ,Peptide Fragments ,Inflammation ,Amyloid-beta ,Chronic pain ,Plasma biomarkers ,Gerontology ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundChronic pain leads to tau accumulation and hippocampal atrophy, which may be moderated through inflammation. In older men, we examined associations of chronic pain with Alzheimer's disease (AD)-related plasma biomarkers and hippocampal volume as moderated by systemic inflammation.MethodsParticipants were men without dementia. Chronic pain was defined as moderate-to-severe pain in 2+ study waves at average ages 56, 62, and 68. At age 68, we measured plasma amyloid-beta (Aβ42, n = 871), Aβ40 (n = 887), total tau (t-tau, n = 841), and neurofilament light chain (NfL, n = 915), and serum high-sensitivity C-reactive protein (hs-CRP, n = 968), a marker of systemic inflammation. A subgroup underwent structural MRI to measure hippocampal volume (n = 385). Analyses adjusted for medical morbidities, depressive symptoms, and opioid use.ResultsChronic pain was related to higher Aβ40 (β = 0.25, p = .009), but hs-CRP was unrelated to AD-related biomarkers (ps > .05). There was a significant interaction such that older men with both chronic pain and higher levels of hs-CRP had higher levels of Aβ42 (β = 0.36, p = .001) and Aβ40 (β = 0.29, p = .003). Chronic pain and hs-CRP did not interact to predict levels of Aβ42/Aβ40, t-tau, or NfL. Furthermore, there were significant interactions such that Aβ42 and Aβ40 were associated with lower hippocampal volume, particularly when levels of hs-CRP were elevated (hs-CRP × Aβ42: β = -0.19, p = .002; hs-CRP × Aβ40: β = -0.21, p = .001), regardless of chronic pain status.ConclusionsChronic pain was associated with higher plasma Aβ, especially when hs-CRP was also elevated. Higher hs-CRP and Aβ levels were both related to smaller hippocampal volumes. Chronic pain, when accompanied by systemic inflammation, may elevate the risk of neurodegeneration in AD-vulnerable regions.
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- 2024
3. In Vivo Femtosecond Laser Machined Transepithelial Nonlinear Optical Corneal Crosslinking Compared to Ultraviolet Corneal Crosslinking
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Bradford, Samantha, Joshi, Rohan, Luo, Shangbang, Farrah, Emily, Xie, Yilu, Brown, Donald J, Juhasz, Tibor, and Jester, James V
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Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Eye Disease and Disorders of Vision ,Biomedical Imaging ,Animals ,Rabbits ,Cross-Linking Reagents ,Riboflavin ,Ultraviolet Rays ,Tomography ,Optical Coherence ,Collagen ,Photosensitizing Agents ,Epithelium ,Corneal ,Photochemotherapy ,Corneal Stroma ,Disease Models ,Animal ,Keratoconus ,Biomedical Engineering ,Opthalmology and Optometry ,Ophthalmology and optometry - Abstract
PurposeThis study assessed the safety and efficacy of transepithelial crosslinking (CXL) using femtosecond (FS) laser-machined epithelial microchannels (MCs) followed by UVA CXL compared to FS laser (NLO CXL) in rabbits.MethodsThe epithelium of 36 rabbits was machined to create 2- by 25-µm MCs at 400 MCs/mm2. Eyes were treated with 1% riboflavin (Rf) solution for 30 minutes, rinsed, and then crosslinked using UVA or NLO CXL. Rabbits were monitored by epithelial staining, optical coherence tomography (OCT) imaging, and esthesiometry. After sacrifice at 2, 4, or 8 weeks, corneas were examined for collagen autofluorescence and immunohistochemistry.ResultsNLO CXL showed no epithelial damage compared to UVA CXL, which produced on average 23.89 ± 5.6 mm2 epithelial defects that healed by day 3. UVA CXL also produced loss of corneal sensitivity averaging 0.83 ± 0.24 cm force to elicit a blink response that persisted for 28 days and remained significantly lower than control or NLO CXL. OCT imaging detected the presence of a demarcation line only following UVA CXL but not NLO CXL.ConclusionsEven with improved transepithelial Rf penetration, UVA CXL resulted in severe epithelial damage, loss of corneal sensitivity, and delayed wound healing persisting for a month. When MCs were paired with NLO CXL, however, these issues were mostly negated. This suggests that MC NLO CXL can achieve a faster visual recovery without postoperative pain or risk of infection.Translational relevanceUVA CXL is a successful procedure, but there is a need for a transepithelial protocol. The combination of MCs and NLO CXL is able to keep the benefits of UVA CXL without causing epithelial damage.
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- 2024
4. Why FLAMINGO is the perfect name for an array of Cherenkov telescopes
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Flock, P., Laguna-Salina, A., James, F., Blossom, G., Carotene, B., Sparks, C., Tarek, D., Ahashia, A., and Donald, J.
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
This paper argues why FLAMINGO (Fast Light Atmospheric Monitoring and Imaging Novel Gamma-ray Observatory) is the perfect name for an array of very-high-energy Cherenkov telescopes. Studies which indicate pink is the most suitable pigment for the structures of Cherenkov telescopes have passed with flying colors. Pink optimizes the absorption and reflectivity properties of the telescopes with respect to the characteristic blue color of the Cherenkov radiation emitted by high-energy particles in the atmosphere. In addition to giving the sensitivity a big leg up, a pink color scheme also adds a unique and visually appealing aspect to the project's branding and outreach efforts. FLAMINGO has a fun and memorable quality that can help to increase public engagement and interest in astrophysics and also help to promote diversity in the field with its colorful nature. In an era of increasingly unpronounceable scientific acronyms, we are putting our foot down. FLAMINGO is particularly fitting, as flamingos have eyesight optimized to detect small particles, aligning with the primary purpose of Cherenkov telescopes to detect faint signals from air showers. We should not wait in the wings just wishing for new name to come along: in FLAMINGO we have an acronym that both accurately reflects the science behind Cherenkov telescopes and provides a visually striking identity for the project. While such a sea change will be no easy feet, we are glad to stick our necks out and try: FLAMINGO captures the essence of what an array of Cherenkov telescopes represents and can help to promote the science to a wider audience. We aim to create an experiment and brand that people from all walks of life will flock to., Comment: 4 pages, 2 figures
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- 2024
5. Bob Ekelund and the method of price theory
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Boudreaux, Donald J.
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- 2024
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6. Extreme enthalpy‒entropy compensation in the dimerization of small solutes in aqueous solution
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Scott, David J. and Winzor, Donald J.
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- 2024
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7. Euripides Scholis: Scholia on Orestes 501–1100
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Mastronarde, Donald J.
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Euripides scholia ,scholia ,medieval scholia ,tragic scholia ,Greek scholia ,scholia edition ,Manuel Moschopulus ,Thomas Magister ,Demetrius Triclinius ,Maximus Planudes ,scholia vetera ,scholia recentiora ,scholia metrica - Abstract
A web and PDF version of the online edition of scholia at euripidesscholia.org, covering updates and additions present in Release 2 (2023), that is, the annotations on Euripides, Orestes 501–1100. This version is intended for digital preservation purposes. Updates and greater functionality are available at the online site.
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- 2024
8. The Association between Exposure to Fine Particulate Matter and MRI-Assessed Locus Coeruleus Integrity in the Vietnam Era Twin Study of Aging (VETSA)
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Puckett, Olivia K., Fennema-Notestine, Christine, Hagler, Donald J., Jr., Braskie, Meredith N., Chen, Jiu-Chiuan, Finch, Caleb E., Kaufman, Joel D., Petkus, Andrew J., Reynolds, Chandra A., Salminen, Lauren E., Thompson, Paul M., Wang, Xinhui, Kremen, William S., Franz, Carol E., and Elman, Jeremy A.
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Aging -- Health aspects ,Magnetic resonance imaging -- Evaluation ,Particles -- Environmental aspects -- Health aspects ,Environmental issues ,Health ,Evaluation ,Environmental aspects ,Health aspects - Abstract
BACKGROUND: Increased exposure to ambient air pollution, especially fine particulate matter [less than or equal to]2.5 [micro]m ([PM.sub.2.5]) is associated with poorer brain health and increased risk for Alzheimer's disease (AD) and related dementias. The locus coeruleus (LC), located in the brainstem, is one of the earliest regions affected by tau pathology seen in AD. Its diffuse projections throughout the brain include afferents to olfactory areas that are hypothesized conduits of cerebral particle deposition. Additionally, extensive contact of the LC with the cerebrovascular system may present an additional route of exposure to environmental toxicants. OBJECTIVE: Our aim was to investigate if exposure to [PM.sub.2.5] was associated with LC integrity in a nationwide sample of men in early old age, potentially representing one pathway through which air pollution can contribute to increased risk for AD dementia. METHODS: We examined the relationship between [PM.sub.2.5] and in vivo magnetic resonance imaging (MRI) estimates of LC structural integrity indexed by contrast to noise ratio ([LC.sub.CNR]) in 381 men [mean age = 67.3; standard deviation (SD) = 2.6] from the Vietnam Era Twin Study of Aging (VETSA). Exposure to [PM.sub.2.5] was taken as a 3-year average over the most recent period for which data were available (average of 5.6 years prior to the MRI scan). We focused on [LC.sub.CNR] in the rostral-middle portion of LC due to its stronger associations with aging and AD than the caudal LC. Associations between [PM.sub.2.5] exposures and LC integrity were tested using linear mixed effects models adjusted for age, scanner, education, household income, and interval between exposure and MRI. A co-twin control analysis was also performed to investigate whether associations remained after controlling for genetic confounding and rearing environment. RESULTS: Multiple linear regressions revealed a significant association between [PM.sub.2.5] and rostral-middle [LC.sub.CNR] (b = -0.16; p = 0.02), whereby higher exposure to [PM.sub.2.5] was associated with lower [LC.sub.CNR]. A co-twin control analysis found that, within monozygotic pairs, individuals with higher [PM.sub.2.5] exposure showed lower [LC.sub.CNR] (b = - 0.11; p = 0.02), indicating associations were not driven by genetic or shared environmental confounds. There were no associations between [PM.sub.2.5] and caudal [LC.sub.CNR] or hippocampal volume, suggesting a degree of specificity to the rostral-middle portion of the LC. DISCUSSION: Given previous findings that loss of LC integrity is associated with increased accumulation of AD-related amyloid and tau pathology, impacts on LC integrity may represent a potential pathway through which exposure to air pollution increases AD risk. https://doi.org/10.1289/EHP14344, Introduction Neuropathological studies indicate that abnormal tau may first appear in the locus coeruleus (LC) starting early in life, (1,2) with substantial accumulation occurring during the course of Alzheimer's disease [...]
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- 2024
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9. Pseudoendocrine sarcoma: a rare new entity with unique radiologic and pathologic/molecular characteristics
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Corey, Zachary, Fanburg-Smith, Julie C., French, Cristy N., Walker, Eric A., Kamerow, Harry N., Cochran, Eric L., Smith, Jessica D., Flemming, Donald J., and Murphey, Mark D.
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- 2024
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10. An assessment of the condition of flowing waters in predominantly urban areas of the conterminous U.S. and its relationship to measures of environmental justice
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Herlihy, Alan T., Kuntz, Kerry L., Benkendorf, Donald J., and Holdsworth, Susan
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- 2024
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11. FEMA: Fast and efficient mixed‐effects algorithm for large sample whole‐brain imaging data
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Parekh, Pravesh, Fan, Chun Chieh, Frei, Oleksandr, Palmer, Clare E, Smith, Diana M, Makowski, Carolina, Iversen, John R, Pecheva, Diliana, Holland, Dominic, Loughnan, Robert, Nedelec, Pierre, Thompson, Wesley K, Hagler, Donald J, Andreassen, Ole A, Jernigan, Terry L, Nichols, Thomas E, and Dale, Anders M
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Biological Psychology ,Psychology ,Bioengineering ,Basic Behavioral and Social Science ,Biomedical Imaging ,Neurosciences ,Behavioral and Social Science ,1.1 Normal biological development and functioning ,Neurological ,Mental health ,Adolescent ,Humans ,Magnetic Resonance Imaging ,Cross-Sectional Studies ,Brain ,Neuroimaging ,Connectome ,Algorithms ,ABCD ,longitudinal analysis ,mixed models ,vertex-wise ,voxel-wise ,whole brain ,Cognitive Sciences ,Experimental Psychology ,Biological psychology ,Cognitive and computational psychology - Abstract
The linear mixed-effects model (LME) is a versatile approach to account for dependence among observations. Many large-scale neuroimaging datasets with complex designs have increased the need for LME; however LME has seldom been used in whole-brain imaging analyses due to its heavy computational requirements. In this paper, we introduce a fast and efficient mixed-effects algorithm (FEMA) that makes whole-brain vertex-wise, voxel-wise, and connectome-wide LME analyses in large samples possible. We validate FEMA with extensive simulations, showing that the estimates of the fixed effects are equivalent to standard maximum likelihood estimates but obtained with orders of magnitude improvement in computational speed. We demonstrate the applicability of FEMA by studying the cross-sectional and longitudinal effects of age on region-of-interest level and vertex-wise cortical thickness, as well as connectome-wide functional connectivity values derived from resting state functional MRI, using longitudinal imaging data from the Adolescent Brain Cognitive DevelopmentSM Study release 4.0. Our analyses reveal distinct spatial patterns for the annualized changes in vertex-wise cortical thickness and connectome-wide connectivity values in early adolescence, highlighting a critical time of brain maturation. The simulations and application to real data show that FEMA enables advanced investigation of the relationships between large numbers of neuroimaging metrics and variables of interest while considering complex study designs, including repeated measures and family structures, in a fast and efficient manner. The source code for FEMA is available via: https://github.com/cmig-research-group/cmig_tools/.
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- 2024
12. Childhood Disadvantage Moderates Late Midlife Default Mode Network Cortical Microstructure and Visual Memory Association
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Tang, Rongxiang, Elman, Jeremy A, Dale, Anders M, Dorros, Stephen M, Eyler, Lisa T, Fennema-Notestine, Christine, Gustavson, Daniel E, Hagler, Donald J, Lyons, Michael J, Panizzon, Matthew S, Puckett, Olivia K, Reynolds, Chandra A, Franz, Carol E, and Kremen, William S
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Biomedical and Clinical Sciences ,Health Sciences ,Clinical Research ,Behavioral and Social Science ,Dementia ,Aging ,Neurodegenerative ,Mental Health ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Basic Behavioral and Social Science ,Acquired Cognitive Impairment ,Neurosciences ,Alzheimer's Disease ,Brain Disorders ,2.1 Biological and endogenous factors ,Male ,Humans ,Aged ,Child ,Default Mode Network ,Magnetic Resonance Imaging ,Brain ,Memory ,Episodic ,Episodic memory ,Mean diffusivity ,Neurodegeneration ,Socioeconomic status ,Clinical Sciences ,Gerontology ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundChildhood disadvantage is a prominent risk factor for cognitive and brain aging. Childhood disadvantage is associated with poorer episodic memory in late midlife and functional and structural brain abnormalities in the default mode network (DMN). Although age-related changes in DMN are associated with episodic memory declines in older adults, it remains unclear if childhood disadvantage has an enduring impact on this later-life brain-cognition relationship earlier in the aging process. Here, within the DMN, we examined whether its cortical microstructural integrity-an early marker of structural vulnerability that increases the risk for future cognitive decline and neurodegeneration-is associated with episodic memory in adults at ages 56-66, and whether childhood disadvantage moderates this association.MethodsCortical mean diffusivity (MD) obtained from diffusion magnetic resonance imaging was used to measure microstructural integrity in 350 community-dwelling men. We examined both visual and verbal episodic memory in relation to DMN MD and divided participants into disadvantaged and nondisadvantaged groups based on parental education and occupation.ResultsHigher DMN MD was associated with poorer visual memory but not verbal memory (β = -0.11, p = .040 vs β = -0.04, p = .535). This association was moderated by childhood disadvantage and was significant only in the disadvantaged group (β = -0.26, p = .002 vs β = -0.00, p = .957).ConclusionsLower DMN cortical microstructural integrity may reflect visual memory vulnerability in cognitively normal adults earlier in the aging process. Individuals who experienced childhood disadvantage manifested greater vulnerability to cortical microstructure-related visual memory dysfunction than their nondisadvantaged counterparts who exhibited resilience in the face of low cortical microstructural integrity.
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- 2024
13. Associations of plasma neurofilament light chain with cognition and neuroimaging measures in community-dwelling early old age men
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Tang, Rongxiang, Buchholz, Erik, Dale, Anders M, Rissman, Robert A, Fennema-Notestine, Christine, Gillespie, Nathan A, Hagler, Donald J, Lyons, Michael J, Neale, Michael C, Panizzon, Matthew S, Puckett, Olivia K, Reynolds, Chandra A, Franz, Carol E, Kremen, William S, and Elman, Jeremy A
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Biomedical and Clinical Sciences ,Health Sciences ,Brain Disorders ,Mental Health ,Health Disparities ,Prevention ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Aging ,Neurodegenerative ,Dementia ,Acquired Cognitive Impairment ,Basic Behavioral and Social Science ,Clinical Research ,Neurosciences ,Alzheimer's Disease ,Behavioral and Social Science ,Mind and Body ,4.1 Discovery and preclinical testing of markers and technologies ,Neurological ,Mental health ,Humans ,Male ,Neurofilament Proteins ,Aged ,Middle Aged ,Independent Living ,Cross-Sectional Studies ,Cognitive Dysfunction ,Neuroimaging ,Cognition ,Biomarkers ,Neuropsychological Tests ,Magnetic Resonance Imaging ,Brain ,White Matter ,Neurofilament light chain ,White matter hyperintensity ,Processing speed ,Neurodegeneration ,Blood-based biomarkers ,Medical and Health Sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundPlasma neurofilament light chain (NfL) is a promising biomarker of neurodegeneration with potential clinical utility in monitoring the progression of neurodegenerative diseases. However, the cross-sectional associations of plasma NfL with measures of cognition and brain have been inconsistent in community-dwelling populations.MethodsWe examined these associations in a large community-dwelling sample of early old age men (N = 969, mean age = 67.57 years, range = 61-73 years), who are either cognitively unimpaired (CU) or with mild cognitive impairment (MCI). Specifically, we investigated five cognitive domains (executive function, episodic memory, verbal fluency, processing speed, visual-spatial ability), as well as neuroimaging measures of gray and white matter.ResultsAfter adjusting for age, health status, and young adult general cognitive ability, plasma NfL level was only significantly associated with processing speed and white matter hyperintensity (WMH) volume, but not with other cognitive or neuroimaging measures. The association with processing speed was driven by individuals with MCI, as it was not detected in CU individuals.ConclusionsThese results suggest that in early old age men without dementia, plasma NfL does not appear to be sensitive to cross-sectional individual differences in most domains of cognition or neuroimaging measures of gray and white matter. The revealed plasma NfL associations were limited to WMH for all participants and processing speed only within the MCI cohort. Importantly, considering cognitive status in community-based samples will better inform the interpretation of the relationships of plasma NfL with cognition and brain and may help resolve mixed findings in the literature.
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- 2024
14. Letter to the Editor on “Group-by-Treatment Interaction Effects in Comparative Bioavailability Studies”
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Sun, Wanjie, Alosh, Mohamed, Schuirmann, Donald J., and Grosser, Stella
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- 2024
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15. Annexin A2 promotes proliferative vitreoretinopathy in response to a macrophage inflammatory signal in mice
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Min Luo, Dena Almeida, Valentina Dallacasagrande, Nadia Hedhli, Mrinali Gupta, Donald J. D’Amico, Szilárd Kiss, and Katherine A. Hajjar
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Science - Abstract
Abstract Proliferative vitreoretinopathy is a vision-threatening response to penetrating ocular injury, for which there is no satisfactory treatment. In this disorder, retinal pigment epithelial cells, abandon their attachment to Bruch’s membrane on the scleral side of the retina, transform into motile fibroblast-like cells, and migrate through the retinal wound to the vitreal surface of the retina, where they secrete membrane-forming proteins. Annexin A2 is a calcium-regulated protein that, in complex with S100A10, assembles plasmin-forming proteins at cell surfaces. Here, we show that, in proliferative vitreoretinopathy, recruitment of macrophages and directed migration of retinal pigment epithelial cells are annexin A2-dependent, and stimulated by macrophage inflammatory protein-1α/β. These factors induce translocation of annexin A2 to the cell surface, thus enabling retinal pigment epithelial cell migration following injury; our studies reveal further that treatment of mice with intraocular antibody to either annexin A2 or macrophage inflammatory protein dampens the development of proliferative vitreoretinopathy in mice.
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- 2024
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16. Patient and public involvement in an evidence synthesis project: description of and reflection on involvement
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Katie Thomson, Alex Todhunter-Brown, Marian C. Brady, Pauline Campbell, Liam Dorris, Susan M. Hunter, Donald J. Nicolson, and Christine Hazelton
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PPI ,Consumer ,Involvement ,Impact ,Challenges ,Evidence synthesis ,Medicine ,Medicine (General) ,R5-920 - Abstract
Abstract Background We conducted an NIHR-funded evidence synthesis project, reviewing evidence relating to interventions for perceptual disorders following stroke. This related paper describes how people with lived experience of stroke-related perceptual disorders contributed to and influenced the project, and identifies lessons for future review projects. Methods We planned our patient and public involvement and engagement (PPIE) activities within a study protocol, described according to the domains of the ACTIVE framework; these were founded on principles for good practice in PPIE. Activities occurred across the lifespan of the project, consisting primarily of group discussions and voting to determine if there was consensus. To assess impact and individual experiences, we sought feedback using an evaluation form after each discussion, and conducted an online meeting at the end of the project to allow further reflection. Results We recruited five people to a Lived Experience Group, including two stroke survivors and three carers. Members attended one face-to-face meeting during the development of the review. Subsequent activities were all held online due to the COVID-19 pandemic; with six online meetings, plus email interactions. Positive impacts of the Lived Experience Group on the reviews included clear definitions of key terms, selection of outcome measures, agreement on implications of review findings, and identification of research recommendations. Key challenges identified related to the complexity of the topic and challenges in the use of new online technology as a consequence of the COVID-pandemic. Conclusions A number of lessons were learned during this project. Specific recommendations for future PPIE are to ensure that those involved have an opportunity to get to know one another, and to provide optional sessions to increase familiarity with online meeting software, clear explanations of the purpose of involvement and specific feedback after each activity. These lessons should be considered when planning the PPIE within future reviews.
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- 2024
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17. Potentiation of cortico-spinal output via targeted electrical stimulation of the motor thalamus
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Jonathan C. Ho, Erinn M. Grigsby, Arianna Damiani, Lucy Liang, Josep-Maria Balaguer, Sridula Kallakuri, Lilly W. Tang, Jessica Barrios-Martinez, Vahagn Karapetyan, Daryl Fields, Peter C. Gerszten, T. Kevin Hitchens, Theodora Constantine, Gregory M. Adams, Donald J. Crammond, Marco Capogrosso, Jorge A. Gonzalez-Martinez, and Elvira Pirondini
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Science - Abstract
Abstract Cerebral white matter lesions prevent cortico-spinal descending inputs from effectively activating spinal motoneurons, leading to loss of motor control. However, in most cases, the damage to cortico-spinal axons is incomplete offering a potential target for therapies aimed at improving volitional muscle activation. Here we hypothesize that, by engaging direct excitatory connections to cortico-spinal motoneurons, stimulation of the motor thalamus could facilitate activation of surviving cortico-spinal fibers thereby immediately potentiating motor output. To test this hypothesis, we identify optimal thalamic targets and stimulation parameters that enhance upper-limb motor-evoked potentials and grip forces in anesthetized monkeys. This potentiation persists after white matter lesions. We replicate these results in humans during intra-operative testing. We then design a stimulation protocol that immediately improves strength and force control in a patient with a chronic white matter lesion. Our results show that electrical stimulation targeting surviving neural pathways can improve motor control after white matter lesions.
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- 2024
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18. Monocyte-driven inflamm-aging reduces intestinal barrier function in females
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Candice Quin, Jessica A. Breznik, Allison E. Kennedy, Erica N. DeJong, Catherine M. Andary, Sofya Ermolina, Donald J. Davidson, Jinhui Ma, Michael G. Surette, and Dawn M. E. Bowdish
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Aging ,Inflammation ,Inflamm-aging ,Immune remodeling ,Intestinal barrier dysfunction ,Immunologic diseases. Allergy ,RC581-607 ,Geriatrics ,RC952-954.6 - Abstract
Abstract Background The intestinal barrier encompasses physical and immunological components that act to compartmentalize luminal contents, such as bacteria and endotoxins, from the host. It has been proposed that an age-related decline of intestinal barrier function may allow for the passage of luminal contents into the bloodstream, triggering a low-grade systemic inflammation termed inflamm-aging. Although there is mounting evidence to support this hypothesis in model species, it is unclear if this phenomenon occurs in humans. In addition, despite being well-established that biological sex impacts aging physiology, its influence on intestinal barrier function and inflamm-aging has not been explored. Results In this study, we observed sex differences in markers of intestinal barrier integrity, where females had increased epithelial permeability throughout life as compared to males. With age, females had an age-associated increase in circulating bacterial products and metabolites such as LPS and kynurenine, suggesting reduced barrier function. Females also had age-associated increases in established markers of inflamm-aging, including peripheral blood monocytes as well as TNF and CRP. To determine if impaired barrier function was driving inflamm-aging, we performed a mediation analysis. The results show that the loss of intestinal barrier integrity was not the mediator of inflamm-aging in humans. Instead, persistent, low-grade inflammation with age preceded the increase in circulating bacterial products, which we confirmed using animal models. We found, as in humans, that sex modified age-associated increases in circulating monocytes in mice, and that inflammation mediates the loss of intestinal barrier function. Conclusion Taken together, our results suggest that higher basal intestinal permeability in combination with age-associated inflammation, increases circulating LPS in females. Thus, targeting barrier permeability in females may slow the progression of inflamm-aging, but is unlikely to prevent it.
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- 2024
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19. Machine Learning with the Raspberry Pi : Experiments with Data and Computer Vision.
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Norris, Donald J.
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Deep learning ,Machine learning ,Raspberry Pi (Computer) - Abstract
Summary: Using the Pi Camera and a Raspberry Pi board, expand and replicate interesting machine learning (ML) experiments. This book provides a solid overview of ML and a myriad of underlying topics to further explore. Non-technical discussions temper complex technical explanations to make the hottest and most complex topic in the hobbyist world of computing understandable and approachable. Machine learning, also commonly referred to as deep learning (DL), is currently being integrated into a multitude of commercial products as well as widely being used in industrial, medical, and military applications. It is hard to find any modern human activity, which has not been "touched" by artificial intelligence (AI) applications. Building on the concepts first presented in Beginning Artificial Intelligence with the Raspberry Pi, you'll go beyond simply understanding the concepts of AI into working with real machine learning experiments and applying practical deep learning concepts to experiments with the Pi board and computer vision. What you learn with Machine Learning with the Raspberry Pi can then be moved on to other platforms to go even further in the world of AI and ML to better your hobbyist or commercial projects.
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- 2019
20. Research Foundations: Transforming Education for Holistic Student Development -- Learning from Education System (Re)Building around the World. Technical Report
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Brookings Institution, Center for Universal Education, Datnow, Amanda, Park, Vicki, Peurach, Donald J., and Spillane, James P.
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The following research review is a companion to "Transforming Education for Holistic Student Development: Learning from Education System (Re)building Around the World" (Datnow et al., 2022), a summary report that explores the work of building and rebuilding education systems to support holistic student development in six systems around the world (in Singapore, Ireland, Chile, Canada, India, and the United States) and in one cross-national system (the International Baccalaureate). This review synthesizes the research foundations of four topics central to the summary report: the contemporary policy focus on holistic student development; instruction, teaching, and learning; (re)building education systems; and the demands on education leaders. It also situates these topics in the global education context. Insights from the review support readers in engaging the summary report both (a) to understand and appreciate the work of these seven initiatives, and (b) to think critically about the ways that their work extends and complicates leading theory and research bearing on (re)building education systems to support holistic student development. [For the full report, see ED626329. For the case reports in this series, see British Columbia (ED626332), India (ED626334), Iowa (ED626337), Ireland (ED626338), and International Baccalaureate (ED626342).]
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- 2022
21. Transforming Education for Holistic Student Development: Learning from Education System (Re)Building around the World. Report
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Brookings Institution, Center for Universal Education, Datnow, Amanda, Park, Vicki, Peurach, Donald J., and Spillane, James P.
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In anticipation of the United Nations Transforming Education Summit in September 2022, this report explores the work of building and (re)building education systems to support holistic student development. It focuses specifically on the journeys of seven education systems--situated in high-, middle-, and low-middle-income countries with democratic traditions--as they make the whole child the center of their work. They include national initiatives in Singapore, Ireland, and Chile; provincial, territorial, and local initiatives in Canada, India, and the United States; and a cross-national initiative in the International Baccalaureate. All seven systems operate in policy contexts pressing for measurable gains in students' academic learning, and none seeks to compromise academic rigor. Yet all seven aim to go further by supporting the intellectual, physical, emotional, social, cultural, and moral development of students. This report is structured in four parts: (1) Motivation and framework; (2) Systems overview and case summaries; (3) Cross-case analysis; and (4) Considerations for collective conversation and action. [Written with Juan Bravo, Whitney Hegseth, Jeanne Ho, Devi Khanna, Dennis Kwek, Angela Lyle, Amelia Peterson, Thomas K. Walsh, José Weinstein, and Hwei Ming Wong. For the technical report, see ED626330. For the case reports in this series, see British Columbia (ED626332), India (ED626334), Iowa (ED626337), Ireland (ED626338), and International Baccalaureate (ED626342).]
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- 2022
22. Changing Notions of Teacher Autonomy: The Intersection of Teacher Autonomy and Instructional Improvement in the US
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Angela M. Lyle and Donald J. Peurach
- Abstract
Historically, teachers had been delegated the primary responsibility for the organization and management of classroom instruction in US public schools. While this delegation afforded teachers professional autonomy in their work, it has also resulted in disparities in students' educational experiences and outcomes within and between classrooms, schools, and systems. In the effort to improve instruction and reduce disparities for students on a large scale, one reform effort in the US has focused on building instructionally focused education systems (IFESs) where central office and school leaders collaborate with teachers to organize and manage instruction. These efforts are playing out in a variety of contexts in the US, including in public school districts, non-profits, and other educational networks, and it is shifting how teachers carry out the day-to-day work of instruction. In this comparative case study, we investigate two IFESs in which efforts to improve instruction pushed against historic norms of teacher autonomy. We found that these new systems are not at odds with teacher autonomy, but rather these systems reflect a transition to more interdependent notions of teacher autonomy.
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- 2024
- Full Text
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23. Transferability of Convolutional Neural Networks in Stationary Learning Tasks
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Owerko, Damian, Kanatsoulis, Charilaos I., Bondarchuk, Jennifer, Bucci Jr, Donald J., and Ribeiro, Alejandro
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Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Signal Processing - Abstract
Recent advances in hardware and big data acquisition have accelerated the development of deep learning techniques. For an extended period of time, increasing the model complexity has led to performance improvements for various tasks. However, this trend is becoming unsustainable and there is a need for alternative, computationally lighter methods. In this paper, we introduce a novel framework for efficient training of convolutional neural networks (CNNs) for large-scale spatial problems. To accomplish this we investigate the properties of CNNs for tasks where the underlying signals are stationary. We show that a CNN trained on small windows of such signals achieves a nearly performance on much larger windows without retraining. This claim is supported by our theoretical analysis, which provides a bound on the performance degradation. Additionally, we conduct thorough experimental analysis on two tasks: multi-target tracking and mobile infrastructure on demand. Our results show that the CNN is able to tackle problems with many hundreds of agents after being trained with fewer than ten. Thus, CNN architectures provide solutions to these problems at previously computationally intractable scales., Comment: 14 pages, 7 figures, for associated code see https://github.com/damowerko/mtt
- Published
- 2023
24. Deterministic Multi-sensor Measurement-adaptive Birth using Labeled Random Finite Sets
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Bondarchuk, Jennifer, Trezza, Anthony, and Bucci Jr, Donald J.
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Electrical Engineering and Systems Science - Signal Processing ,Electrical Engineering and Systems Science - Systems and Control - Abstract
Measurement-adaptive track initiation remains a critical design requirement of many practical multi-target tracking systems. For labeled random finite sets multi-object filters, prior work has been established to construct a labeled multi-object birth density using measurements from multiple sensors. A truncation procedure has also been provided that leverages a stochastic Gibbs sampler to truncate the birth density for scalability. In this work, we introduce a deterministic herded Gibbs sampling truncation solution for efficient multi-sensor adaptive track initialization. Removing the stochastic behavior of the track initialization procedure without impacting average tracking performance enables a more robust tracking solution more suitable for safety-critical applications. Simulation results for linear sensing scenarios are provided to verify performance., Comment: Accepted to the 2023 Proc. IEEE 26th Int. Conf. Inf. Fusion
- Published
- 2023
25. On Gibbs Sampling Architecture for Labeled Random Finite Sets Multi-Object Tracking
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Trezza, Anthony, Bucci Jr., Donald J., and Varshney, Pramod K.
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Electrical Engineering and Systems Science - Systems and Control ,Electrical Engineering and Systems Science - Signal Processing - Abstract
Gibbs sampling is one of the most popular Markov chain Monte Carlo algorithms because of its simplicity, scalability, and wide applicability within many fields of statistics, science, and engineering. In the labeled random finite sets literature, Gibbs sampling procedures have recently been applied to efficiently truncate the single-sensor and multi-sensor $\delta$-generalized labeled multi-Bernoulli posterior density as well as the multi-sensor adaptive labeled multi-Bernoulli birth distribution. However, only a limited discussion has been provided regarding key Gibbs sampler architecture details including the Markov chain Monte Carlo sample generation technique and early termination criteria. This paper begins with a brief background on Markov chain Monte Carlo methods and a review of the Gibbs sampler implementations proposed for labeled random finite sets filters. Next, we propose a short chain, multi-simulation sample generation technique that is well suited for these applications and enables a parallel processing implementation. Additionally, we present two heuristic early termination criteria that achieve similar sampling performance with substantially fewer Markov chain observations. Finally, the benefits of the proposed Gibbs samplers are demonstrated via two Monte Carlo simulations., Comment: Accepted to the 2023 Proc. IEEE 26th Int. Conf. Inf. Fusion
- Published
- 2023
26. Bayesian Learning of Gas Transport in Three-Dimensional Fracture Networks
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Shi, Yingqi, Berry, Donald J., Kath, John, Lodhy, Shams, Ly, An, Percus, Allon G., Hyman, Jeffrey D., Moran, Kelly, Strait, Justin, Sweeney, Matthew R., Viswanathan, Hari S., and Stauffer, Philip H.
- Subjects
Physics - Geophysics ,Physics - Data Analysis, Statistics and Probability - Abstract
Modeling gas flow through fractures of subsurface rock is a particularly challenging problem because of the heterogeneous nature of the material. High-fidelity simulations using discrete fracture network (DFN) models are one methodology for predicting gas particle breakthrough times at the surface, but are computationally demanding. We propose a Bayesian machine learning method that serves as an efficient surrogate model, or emulator, for these three-dimensional DFN simulations. Our model trains on a small quantity of simulation data and, using a graph/path-based decomposition of the fracture network, rapidly predicts quantiles of the breakthrough time distribution. The approach, based on Gaussian Process Regression (GPR), outputs predictions that are within 20-30% of high-fidelity DFN simulation results. Unlike previously proposed methods, it also provides uncertainty quantification, outputting confidence intervals that are essential given the uncertainty inherent in subsurface modeling. Our trained model runs within a fraction of a second, which is considerably faster than other methods with comparable accuracy and multiple orders of magnitude faster than high-fidelity simulations.
- Published
- 2023
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- View/download PDF
27. Nivolumab for Patients With High-Risk Oral Leukoplakia
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Hanna, Glenn J, Villa, Alessandro, Nandi, Shuvro P, Shi, Ruichao, ONeill, Anne, Liu, Mofei, Quinn, Charles T, Treister, Nathaniel S, Sroussi, Herve Y, Vacharotayangul, Piamkamon, Goguen, Laura A, Annino, Donald J, Rettig, Eleni M, Jo, Vickie Y, Wong, Kristine S, Lizotte, Patrick, Paweletz, Cloud P, Uppaluri, Ravindra, Haddad, Robert I, Cohen, Ezra EW, Alexandrov, Ludmil B, William, William N, Lippman, Scott M, and Woo, Sook-bin
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Clinical Research ,Digestive Diseases ,Prevention ,Rare Diseases ,Clinical Trials and Supportive Activities ,Cancer ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Good Health and Well Being ,Public Health and Health Services ,Oncology and carcinogenesis - Abstract
ImportanceProliferative verrucous leukoplakia (PVL) is an aggressive oral precancerous disease characterized by a high risk of transformation to invasive oral squamous cell carcinoma (OSCC), and no therapies have been shown to affect its natural history. A recent study of the PVL immune landscape revealed a cytotoxic T-cell-rich microenvironment, providing strong rationale to investigate immune checkpoint therapy.ObjectiveTo determine the safety and clinical activity of anti-programmed cell death 1 protein (PD-1) therapy to treat high-risk PVL.Design, setting, and participantsThis nonrandomized, open-label, phase 2 clinical trial was conducted from January 2019 to December 2021 at a single academic medical center; median (range) follow-up was 21.1 (5.4-43.6) months. Participants were a population-based sample of patients with PVL (multifocal, contiguous, or a single lesion ≥4 cm with any degree of dysplasia).InterventionPatients underwent pretreatment biopsy (1-3 sites) and then received 4 doses of nivolumab (480 mg intravenously) every 28 days, followed by rebiopsy and intraoral photographs at each visit.Main outcomes and measuresThe primary end point was the change in composite score (size and degree of dysplasia) from before to after treatment (major response [MR]: >80% decrease in score; partial response: 40%-80% decrease). Secondary analyses included immune-related adverse events, cancer-free survival (CFS), PD-1 ligand 1 (PD-L1) expression, 9p21.3 deletion, and other exploratory immunologic and genomic associations of response.ResultsA total of 33 patients were enrolled (median [range] age, 63 [32-80] years; 18 [55%] were female), including 8 (24%) with previously resected early-stage OSCC. Twelve patients (36%) (95% CI, 20.4%-54.8%) had a response by composite score (3 MRs [9%]), 4 had progressive disease (>10% composite score increase, or cancer). Nine patients (27%) developed OSCC during the trial, with a 2-year CFS of 73% (95% CI, 53%-86%). Two patients (6%) discontinued because of toxic effects; 7 (21%) experienced grade 3 to 4 immune-related adverse events. PD-L1 combined positive scores were not associated with response or CFS. Of 20 whole-exome sequenced patients, all 6 patients who had progression to OSCC after nivolumab treatment exhibited 9p21.3 somatic copy-number loss on pretreatment biopsy, while only 4 of the 14 patients (29%) who did not develop OSCC had 9p21.3 loss.Conclusions and relevanceThis immune checkpoint therapy precancer nonrandomized clinical trial met its prespecified response end point, suggesting potential clinical activity for nivolumab in high-risk PVL. Findings identified immunogenomic associations to inform future trials in this precancerous disease with unmet medical need that has been difficult to study.Trial registrationClinicalTrials.gov Identifier: NCT03692325.
- Published
- 2023
28. Rostral-middle locus coeruleus integrity and subjective cognitive decline in early old age
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Bell, Tyler Reed, Elman, Jeremy A, Beck, Asad, Fennema-Notestine, Christine, Gustavson, Daniel E, Hagler, Donald J, Jack, Amy J, Lyons, Michael J, Puckett, Olivia K, Toomey, Rosemary, Franz, Carol E, and Kremen, William S
- Subjects
Biological Psychology ,Psychology ,Alzheimer's Disease ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Behavioral and Social Science ,Prevention ,Acquired Cognitive Impairment ,Neurodegenerative ,Neurosciences ,Dementia ,Aging ,Brain Disorders ,2.1 Biological and endogenous factors ,Male ,Humans ,Aged ,Locus Coeruleus ,Alzheimer Disease ,Cognitive Dysfunction ,Cognition ,subcortical ,cognitive complaints ,cognitive impairment ,brain stem ,noradrenergic ,norepinephrine ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Experimental Psychology ,Biomedical and clinical sciences ,Health sciences - Abstract
ObjectivesAbnormal tau, a hallmark Alzheimer's disease (AD) pathology, may appear in the locus coeruleus (LC) decades before AD symptom onset. Reports of subjective cognitive decline are also often present prior to formal diagnosis. Yet, the relationship between LC structural integrity and subjective cognitive decline has remained unexplored. Here, we aimed to explore these potential associations.MethodsWe examined 381 community-dwelling men (mean age = 67.58; SD = 2.62) in the Vietnam Era Twin Study of Aging who underwent LC-sensitive magnetic resonance imaging and completed the Everyday Cognition scale to measure subjective cognitive decline along with their selected informants. Mixed models examined the associations between rostral-middle and caudal LC integrity and subjective cognitive decline after adjusting for depressive symptoms, physical morbidities, and family. Models also adjusted for current objective cognitive performance and objective cognitive decline to explore attenuation.ResultsFor participant ratings, lower rostral-middle LC contrast to noise ratio (LCCNR) was associated with significantly greater subjective decline in memory, executive function, and visuospatial abilities. For informant ratings, lower rostral-middle LCCNR was associated with significantly greater subjective decline in memory only. Associations remained after adjusting for current objective cognition and objective cognitive decline in respective domains.ConclusionsLower rostral-middle LC integrity is associated with greater subjective cognitive decline. Although not explained by objective cognitive performance, such a relationship may explain increased AD risk in people with subjective cognitive decline as the LC is an important neural substrate important for higher order cognitive processing, attention, and arousal and one of the first sites of AD pathology.
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- 2023
29. Higher cortical thickness/volume in Alzheimer’s-related regions: protective factor or risk factor?
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Williams, McKenna E, Elman, Jeremy A, Bell, Tyler R, Dale, Anders M, Eyler, Lisa T, Fennema-Notestine, Christine, Franz, Carol E, Gillespie, Nathan A, Hagler, Donald J, Lyons, Michael J, McEvoy, Linda K, Neale, Michael C, Panizzon, Matthew S, Reynolds, Chandra A, Sanderson-Cimino, Mark, and Kremen, William S
- Subjects
Biological Psychology ,Psychology ,Alzheimer's Disease ,Neurosciences ,Neurodegenerative ,Dementia ,Acquired Cognitive Impairment ,Behavioral and Social Science ,Brain Disorders ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Clinical Research ,Prevention ,Aging ,2.1 Biological and endogenous factors ,Neurological ,Male ,Humans ,Alzheimer Disease ,Protective Factors ,Brain ,Risk Factors ,Magnetic Resonance Imaging ,Alzheimer's disease ,Neuroimaging ,Signatures ,Cortical thickness ,Mean diffusivity ,Alzheimer’s disease ,Clinical Sciences ,Neurology & Neurosurgery ,Biological psychology - Abstract
Some evidence suggests a biphasic pattern of changes in cortical thickness wherein higher, rather than lower, thickness is associated with very early Alzheimer's disease (AD) pathology. We examined whether integrating information from AD brain signatures based on mean diffusivity (MD) can aid in the interpretation of cortical thickness/volume as a risk factor for future AD-related changes. Participants were 572 men in the Vietnam Era Twin Study of Aging who were cognitively unimpaired at baseline (mean age = 56 years; range = 51-60). Individuals with both high thickness/volume signatures and high MD signatures at baseline had lower cortical thickness/volume in AD signature regions and lower episodic memory performance 12 years later compared to those with high thickness/volume and low MD signatures at baseline. Groups did not differ in level of young adult cognitive reserve. Our findings are in line with a biphasic model in which increased cortical thickness may precede future decline and establish the value of examining cortical MD alongside cortical thickness to identify subgroups with differential risk for poorer brain and cognitive outcomes.
- Published
- 2023
30. Genetic and Environmental Influences on Structural and Diffusion-Based Alzheimer’s Disease Neuroimaging Signatures Across Midlife and Early Old Age
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Williams, McKenna E, Gillespie, Nathan A, Bell, Tyler R, Dale, Anders M, Elman, Jeremy A, Eyler, Lisa T, Fennema-Notestine, Christine, Franz, Carol E, Hagler, Donald J, Lyons, Michael J, McEvoy, Linda K, Neale, Michael C, Panizzon, Matthew S, Reynolds, Chandra A, Sanderson-Cimino, Mark, and Kremen, William S
- Subjects
Biological Psychology ,Psychology ,Neurodegenerative ,Biomedical Imaging ,Dementia ,Acquired Cognitive Impairment ,Genetics ,Brain Disorders ,Alzheimer's Disease ,Aging ,Neurosciences ,Prevention ,Clinical Research ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,4.1 Discovery and preclinical testing of markers and technologies ,2.1 Biological and endogenous factors ,Neurological ,Male ,Humans ,Child ,Alzheimer Disease ,Diffusion Tensor Imaging ,Neuroimaging ,Magnetic Resonance Imaging ,Brain ,Alzheimer’s disease ,Brain age ,Cortical thickness ,Early prediction ,Mean diffusivity ,Biological psychology ,Clinical and health psychology - Abstract
BackgroundComposite scores of magnetic resonance imaging-derived metrics in brain regions associated with Alzheimer's disease (AD), commonly termed AD signatures, have been developed to distinguish early AD-related atrophy from normal age-associated changes. Diffusion-based gray matter signatures may be more sensitive to early AD-related changes compared with thickness/volume-based signatures, demonstrating their potential clinical utility. The timing of early (i.e., midlife) changes in AD signatures from different modalities and whether diffusion- and thickness/volume-based signatures each capture unique AD-related phenotypic or genetic information remains unknown.MethodsOur validated thickness/volume signature, our novel mean diffusivity (MD) signature, and a magnetic resonance imaging-derived measure of brain age were used in biometrical analyses to examine genetic and environmental influences on the measures as well as phenotypic and genetic relationships between measures over 12 years. Participants were 736 men from 3 waves of the Vietnam Era Twin Study of Aging (VETSA) (baseline/wave 1: mean age [years] = 56.1, SD = 2.6, range = 51.1-60.2). Subsequent waves occurred at approximately 5.7-year intervals.ResultsMD and thickness/volume signatures were highly heritable (56%-72%). Baseline MD signatures predicted thickness/volume signatures over a decade later, but baseline thickness/volume signatures showed a significantly weaker relationship with future MD signatures. AD signatures and brain age were correlated, but each measure captured unique phenotypic and genetic variance.ConclusionsCortical MD and thickness/volume AD signatures are heritable, and each signature captures unique variance that is also not explained by brain age. Moreover, results are in line with changes in MD emerging before changes in cortical thickness, underscoring the utility of MD as a very early predictor of AD risk.
- Published
- 2023
31. Guidelines for the specification of blue safety flags in railroad operations
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Hannon, Donald J.
- Subjects
Railroads -- Automatic train control -- Safety measures. ,Railroads -- Signaling -- Safety measures. ,Human engineering. - Published
- 2010
32. A cyclic peptide toolkit reveals mechanistic principles of peptidylarginine deiminase IV regulation
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Bertran, M. Teresa, Walmsley, Robert, Cummings, Thomas, Aramburu, Iker Valle, Benton, Donald J., Mora Molina, Rocio, Assalaarachchi, Jayalini, Chasampalioti, Maria, Swanton, Tessa, Joshi, Dhira, Federico, Stefania, Okkenhaug, Hanneke, Yu, Lu, Oxley, David, Walker, Simon, Papayannopoulos, Venizelos, Suga, Hiroaki, Christophorou, Maria A., and Walport, Louise J.
- Published
- 2024
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33. Annexin A2 promotes proliferative vitreoretinopathy in response to a macrophage inflammatory signal in mice
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Luo, Min, Almeida, Dena, Dallacasagrande, Valentina, Hedhli, Nadia, Gupta, Mrinali, D’Amico, Donald J., Kiss, Szilárd, and Hajjar, Katherine A.
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- 2024
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34. Patient and public involvement in an evidence synthesis project: description of and reflection on involvement
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Thomson, Katie, Todhunter-Brown, Alex, Brady, Marian C., Campbell, Pauline, Dorris, Liam, Hunter, Susan M., Nicolson, Donald J., and Hazelton, Christine
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- 2024
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35. Potentiation of cortico-spinal output via targeted electrical stimulation of the motor thalamus
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Ho, Jonathan C., Grigsby, Erinn M., Damiani, Arianna, Liang, Lucy, Balaguer, Josep-Maria, Kallakuri, Sridula, Tang, Lilly W., Barrios-Martinez, Jessica, Karapetyan, Vahagn, Fields, Daryl, Gerszten, Peter C., Hitchens, T. Kevin, Constantine, Theodora, Adams, Gregory M., Crammond, Donald J., Capogrosso, Marco, Gonzalez-Martinez, Jorge A., and Pirondini, Elvira
- Published
- 2024
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36. Monocyte-driven inflamm-aging reduces intestinal barrier function in females
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Quin, Candice, Breznik, Jessica A., Kennedy, Allison E., DeJong, Erica N., Andary, Catherine M., Ermolina, Sofya, Davidson, Donald J., Ma, Jinhui, Surette, Michael G., and Bowdish, Dawn M. E.
- Published
- 2024
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37. Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing
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Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Jr, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., and Xu, Joshua
- Published
- 2024
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38. Nasal cathelicidin is expressed in early life and is increased during mild, but not severe respiratory syncytial virus infection
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Sintoris, Sofia, Binkowska, Justyna M., Gillan, Jonathan L., Zuurbier, Roy P., Twynam-Perkins, Jonathan, Kristensen, Maartje, Melrose, Lauren, Parga, Paula Lusaretta, Rodriguez, Alicia Ruiz, Chu, Mei Ling, van Boeckel, Sara R., Wildenbeest, Joanne G., Bowdish, Dawn M. E., Currie, Andrew J., Thwaites, Ryan S., Schwarze, Jurgen, van Houten, Marlies A., Boardman, James P., Cunningham, Steve, Bogaert, Debby, and Davidson, Donald J.
- Published
- 2024
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39. Differences in regional brain structure in toddlers with autism are related to future language outcomes
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Duan, Kuaikuai, Eyler, Lisa, Pierce, Karen, Lombardo, Michael V., Datko, Michael, Hagler, Donald J., Taluja, Vani, Zahiri, Javad, Campbell, Kathleen, Barnes, Cynthia Carter, Arias, Steven, Nalabolu, Srinivasa, Troxel, Jaden, Ji, Peng, and Courchesne, Eric
- Published
- 2024
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40. NeuronBridge: an intuitive web application for neuronal morphology search across large data sets
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Clements, Jody, Goina, Cristian, Hubbard, Philip M., Kawase, Takashi, Olbris, Donald J., Otsuna, Hideo, Svirskas, Robert, and Rokicki, Konrad
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- 2024
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41. Intercellular communication atlas reveals Oprm1 as a neuroprotective factor for retinal ganglion cells
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Qian, Cheng, Xin, Ying, Qi, Cheng, Wang, Hui, Dong, Bryan C., Zack, Donald J., Blackshaw, Seth, Hattar, Samer, Zhou, Feng-Quan, and Qian, Jiang
- Published
- 2024
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42. Social determinants of health and treatment center affiliation: analysis from the sickle cell disease implementation consortium registry
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Mendez, Gustavo G., Nocek, Judith M., Brambilla, Donald J., Jacobs, Sara, Cole, Oladipo, Kanter, Julie, Glassberg, Jeffrey, Saving, Kay L., Melvin, Cathy L., Gibson, Robert W., Treadwell, Marsha, Jackson, George L., King, Allison A., Gordeuk, Victor R., Kroner, Barbara, and Hsu, Lewis L.
- Published
- 2024
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43. The carbon emissions of writing and illustrating are lower for AI than for humans
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Tomlinson, Bill, Black, Rebecca W., Patterson, Donald J., and Torrance, Andrew W.
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- 2024
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44. Circulating sphingolipids and relationship to cardiac remodelling before and following a low-energy diet in asymptomatic Type 2 Diabetes
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Brady, Emer M., Cao, Thong H., Moss, Alastair J., Athithan, Lavanya, Ayton, Sarah L., Redman, Emma, Argyridou, Stavroula, Graham-Brown, Matthew P. M., Maxwell, Colleen B., Jones, Donald J. L., Ng, Leong, Yates, Thomas, Davies, Melanie J, McCann, Gerry P., and Gulsin, Gaurav S.
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- 2024
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45. Prevalence of Age-Related Macular Degeneration in Patients with Chronic Exposure to P2X7R Inhibitors
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Woo, Kwang Min, Mahrous, M. Abdallah, D’Amico, Donald J., Kiss, Szilard, and Kovacs, Kyle D.
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- 2024
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46. Screening for lipid nanoparticles that modulate the immune activity of helper T cells towards enhanced antitumour activity
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Zhu, Yining, Ma, Jingyao, Shen, Ruochen, Lin, Jinghan, Li, Shuyi, Lu, Xiaoya, Stelzel, Jessica L., Kong, Jiayuan, Cheng, Leonardo, Vuong, Ivan, Yao, Zhi-Cheng, Wei, Christine, Korinetz, Nicole M., Toh, Wu Han, Choy, Joseph, Reynolds, Rebekah A., Shears, Melanie J., Cho, Won June, Livingston, Natalie K., Howard, Gregory P., Hu, Yizong, Tzeng, Stephany Y., Zack, Donald J., Green, Jordan J., Zheng, Lei, Doloff, Joshua C., Schneck, Jonathan P., Reddy, Sashank K., Murphy, Sean C., and Mao, Hai-Quan
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- 2024
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47. Frequency and predictors of complication clustering within 30 days of spinal fusion surgery: a study of children with neuromuscular scoliosis
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Rajkumar, Sujay, Iyer, Rajiv R., Stone, Lauren, Kelly, Michael P., Plonsker, Jillian, Brandel, Michael, Gonda, David D., Mazur, Marcus D., Ikeda, Daniel S., Lucas, Donald J., Choi, Pamela M., and Ravindra, Vijay M.
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- 2024
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48. Diagnostic utility of different types of somatosensory evoked potential changes in pediatric idiopathic scoliosis correction surgery
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Gorijala, Vamsi Krishna, Reddy, Rajiv P., Anetakis, Katherine M., Balzer, Jeffrey, Crammond, Donald J., Shandal, Varun, Shaw, Jeremy D., Christie, Michelle R., and Thirumala, Parthasarathy D.
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- 2024
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49. HEARTS in the Americas: Targeting Health System Change to Improve Population Hypertension Control
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Ordunez, Pedro, Campbell, Norm R. C., DiPette, Donald J., Jaffe, Marc G., Rosende, Andres, Martinez, Ramon, Gamarra, Angelo, Lombardi, Cintia, Parra, Natalia, Rodriguez, Libardo, Rodriguez, Yenny, and Brettler, Jeffrey
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- 2024
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50. Cardiac Catheterization in Adults with Ebstein Anomaly: Pathophysiologic Insights Regarding Surgical Repair and Prognosis
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Miranda, William R., Dearani, Joseph A., Jain, C. Charles, Hagler, Donald J., Connolly, Heidi M., and Egbe, Alexander C.
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- 2024
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