9 results on '"Dioscorea nummularia"'
Search Results
2. Plastid phylogenetics of Oceania yams ( Dioscorea spp., Dioscoreaceae) reveals natural interspecific hybridization of the greater yam ( D. alata).
- Author
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Chaïr, Hana, Sardos, Julie, Supply, Anthea, Mournet, Pierre, Malapa, Roger, and Lebot, Vincent
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PLASTIDS , *PLANT phylogeny , *DIOSCOREACEAE , *PLANT hybridization , *MICROSATELLITE repeats in plants , *PLANT classification - Abstract
Phylogenetic relationships of Oceanian staple yams (species of Dioscorea section Enantiophyllum) were investigated using plastid trnL-F and rpl32-trnL( UAG) sequences and nine nuclear co-dominant microsatellites. Analysis of herbarium specimens, used as taxonomic references, allowed the comparison with samples collected in the field. It appears that D. alata, D. transversa and D. hastifolia are closely related species. This study does not support a direct ancestry from D. nummularia to D. alata as previously hypothesized. The dichotomy in D. nummularia previously described by farmers in semi-perennial and annual types was reflected by molecular markers, but the genetic structure of D. nummularia appears more complex. Dioscorea nummularia displayed two haplotypes, each corresponding to a different genetic group. One, including a D. nummularia voucher from New Guinea, is closer to D. tranversa, D. alata and D. hastifolia and encompasses only semi-perennial types. The second group is composed of semi-perennial and annual yams. However, some of these annual yams also displayed D. alata haplotypes. Nuclear markers revealed that some annual yams shared alleles with D. alata and semi-perennial D. nummularia, suggesting a hybrid origin, which may explain their intermediate morphotypes and the difficulty met in classifying them. [ABSTRACT FROM AUTHOR]
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- 2016
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3. Caryatin and 3’-O-methylcaryatin contents in edible yams (Dioscorea spp.)
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Benjamin Fel, Anne Baudouin, Sonia Czarnes, Vincent Lebot, Fabienne Fache, Laurent Legendre, Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Amélioration génétique et adaptation des plantes méditerranéennes et tropicales (UMR AGAP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Département Systèmes Biologiques (Cirad-BIOS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), and ANR-2010-STRA-007
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Antioxidant ,030309 nutrition & dietetics ,medicine.medical_treatment ,Composition des aliments ,Fractionation ,3’-O-methylcaryatin ,Biology ,Spectrométrie de masse ,01 natural sciences ,03 medical and health sciences ,Flavonols ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,medicine ,Food science ,Q04 - Composition des produits alimentaires ,Caryatin ,Hybrid ,2. Zero hunger ,chemistry.chemical_classification ,0303 health sciences ,Dioscorea nummularia ,Chromatographie en couche mince ,Dioscorea ,010401 analytical chemistry ,Interspecific competition ,Flavonoïde ,biology.organism_classification ,Antioxydant ,Genus Dioscorea ,0104 chemical sciences ,Phytochemical ,chemistry ,Composé phénolique ,Antimicrobial ,Yam ,[CHIM.OTHE]Chemical Sciences/Other ,Flavonol ,Food Science - Abstract
International audience; The genus Dioscorea hosts a large number of yam species used medicinally and as a staple food by millions of people in tropical countries. All yams share a high antioxidant activity that correlates with their total phenolics contents. However, knowledge of edible species antioxidant phenolics remains incomplete. Bioassay-guided fractionation of the tubers of a yam species with high total phenolics content, D. nummularia, led to the isolation of two flavonols, caryatin and 3 ′-O-methyl caryatin, contributing over 92% of a stable methanol extract of the tuber in this species. Their structures were determined by high resolution mass spectrometry (HRMS), nuclear magnetic resonance (NMR) and a synthesized authentic sample. They displayed no bacterial toxicity. Their content was estimated in the tubers and bulbils of 411 landraces and hybrids belonging to eight food yam species using high performance-thin layer chromatography (HP-TLC). These were found to be highly variable at the intra-and interspecific levels to reach up to 1 030 and 457 μg/g DW respectively and added up to contents of already described antioxidant phenolics. This study provides additional understanding of the health benefits of a yam diet and constitutes the first phytochemical analysis of D. nummularia.
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- 2021
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4. The Pacific yam (Dioscorea nummularia Lam.), an under-exploited tuber crop from Melanesia
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Kuttolamadathil Abraham, Roger Malapa, and Vincent Lebot
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0106 biological sciences ,0301 basic medicine ,Germplasm ,Phylogénie ,Pollination ,Organe reproducteur végétal ,Plant Science ,medicine.disease_cause ,01 natural sciences ,F30 - Génétique et amélioration des plantes ,Plante sauvage ,Igname ,Cultivar ,Dioscorea nummularia ,Enquête ,F70 - Taxonomie végétale et phytogéographie ,Composition chimique ,Hybridation interspécifique ,Provenance ,Amidon ,Biologie ,Distribution géographique ,F60 - Physiologie et biochimie végétale ,Biogéographie ,Biology ,Crop ,03 medical and health sciences ,Tubercule ,Pollen ,Botany ,Genetics ,medicine ,Plant breeding ,Variété ,Domestication ,Q04 - Composition des produits alimentaires ,Ecology, Evolution, Behavior and Systematics ,Morphologie végétale ,Interspecific competition ,légume ,Taxonomie ,Résistance aux maladies ,Amélioration des plantes ,030104 developmental biology ,Plante de culture ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
This study aims to explore the potential of Dioscorea nummularia Lam. and to gather information as a prelude to its improvement by plant breeding. After a taxonomic clarification and a review of the botanical data, its geographical areas of origin and distribution are determined. A germplasm survey conducted on nine islands of Vanuatu enabled the collection of 110 accessions corresponding to 84 cultivars. These were grouped into: (1) wild forms under domestication, (2) annual types, (3) perennial-type cultivars of D. nummularia and (4) natural interspecific hybrids with D. alata L. Within each group, remarkable morphological variation exists for stem spininess, leaf shape, emerging leaf colour, tuber shape and tuber flesh colour. Selected accessions examined for ploidy had chromosome numbers ranging from 2n = 3x = 60 to 2n = 6x = 120. Chloroplast counts conducted on stomatal guard cells confirmed the variation in ploidy levels. Eight different male cultivars were studied for pollen fertility, but
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- 2017
5. IntroducedDioscoreaspp. starch in Lapita and later deposits, Vao Island, Vanuatu
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Stuart Bedford and Mark Horrocks
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biology ,Starch ,Dioscorea nummularia ,Dioscoreaceae ,Dioscorea alata ,Plant Science ,biology.organism_classification ,Monocotyledon ,chemistry.chemical_compound ,chemistry ,Botany ,Dioscorea ,Dioscorea pentaphylla ,Ecology, Evolution, Behavior and Systematics - Abstract
Analysis of deposits at a Lapita site in Vanuatu revealed putative starch grains of Dioscorea nummularia in ~2800–3100cal. BP layers and of Dioscorea pentaphylla in a ~2000 cal. BP layer, suggesting local cultivation of these tuberous crops. The Dioscoreaceae are a new addition to the introduced cultigens thus far directly identified for prehistoric Vanuatu.
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- 2010
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6. Genetic Diversity of the Greater Yam (Dioscorea alata L.) and Relatedness to D. nummularia Lam. and D. transversa Br. as Revealed with AFLP Markers
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Jean-Louis Noyer, Roger Malapa, Vincent Lebot, Gemma Arnau, Polymorphismes d'intérêt agronomique (UMR PIA), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA), and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)
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0106 biological sciences ,Phylogénie ,Polymorphisme génétique ,IGNAME DE CAYENNE ,Plant Science ,IGNAME BULBIFERE ,01 natural sciences ,PLOIDY LEVELS ,F30 - Génétique et amélioration des plantes ,IGNAME AILEE ,Genotype ,Marqueur génétique ,Cultivar ,ENANTIOPHYLLUM ,0303 health sciences ,Dioscorea nummularia ,biology ,Dioscorea ,F70 - Taxonomie végétale et phytogéographie ,Dioscorea alata ,AFLP MARKERS ,GENETIC DIVERSITY ,Ploidy ,Distribution géographique ,Genetic relationship ,03 medical and health sciences ,Variation génétique ,Botany ,Genetics ,PAPOUASIE-NOUVELLE-GUINEE ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,Genetic diversity ,UPGMA ,Taxonomie ,biology.organism_classification ,Amplified fragment length polymorphism ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
UMR DAP; International audience; Amplified fragment length polymorphism markers were used to assess the genetic relatedness between Dioscorea alata and nine other edible Dioscorea. These species include D. abyssinica Hoch., D. bulbifera L., D. cayenensis-rotundata Lamk. et Poir., D. esculenta Burk., D. nummularia Lam., D. pentaphylla L., D. persimilis Prain. et Burk., D. transversa Br. and D. trifida L. Four successive studies were conducted with emphasis on the genetic relationship within D. alata and among species of the Enantiophyllum section from Vanuatu. Study 1 was carried out to select a set of polymorphic primer pairs using 11 combinations and eight species belonging to five distinct sections. The four most polymorphic primer pairs were used in study 2 among six species of the Enantiophyllum section. Study 3 focussed mainly on the genetic relationship among 83 accessions of D. alata, mostly from Vanuatu (78 acc.) but also from Benin, Guadeloupe, New Caledonia and Vietnam. The ploidy level of 53 accessions was determined and results indicated the presence of tetraploid, hexaploid and octoploid cultivars. Study 4, included 35 accessions of D. alata, D. nummularia and D. transversa and was conducted using two primer pairs to verify the taxonomical identity of thecultivars ‘langlang’, ‘maro’ and ‘netsar’ from Vanuatu. The overall results indicated that each accession can be fingerprinted uniquely with AFLP. D. alata is an heterogeneous species which shares a common genetic background with D. nummularia and ‘langlang’, ‘maro’ and ‘netsar’. UPGMA cluster analysis revealed the existence of three major groups of genotypes within D. alata, each assembling accessions from distant geographical origins and different ploidy levels. The analysis also revealed that ‘langlang’, ‘maro’ and ‘netsar’ clustered together with the cultivar ‘wael’ (D. transversa) from New Caledonia. Results are discussed in the paper
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- 2005
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7. Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams
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Laurence Svanella Dumas, Lydiane Bonheur, Chantal Faure, Denis Filloux, Isabelle Acina Mambole, Thierry Candresse, Claudie Pavis, Philippe Roumagnac, Armelle Marais, Fabiola Anzala, Rose-Marie Gomez, David Lange, Pierre-Yves Teycheney, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Biologie du fruit et pathologie (BFP), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1, Biologie et Génétique des interactions Plantes-parasites pour la Protection Intégrée, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Agrosystèmes tropicaux (ASTRO), Institut National de la Recherche Agronomique (INRA), and Université Sciences et Technologies - Bordeaux 1-Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)
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0106 biological sciences ,Identification ,Nerine ,Virologie ,Sequence Homology ,Dioscorea rotundata ,Dioscorea trifida ,01 natural sciences ,Gene Order ,Cluster Analysis ,Phylogeny ,0303 health sciences ,Dioscorea cayenensis ,Dioscorea nummularia ,biology ,Phylogenetic tree ,Dioscorea ,General Medicine ,Potexvirus ,Espèce nouvelle ,RNA, Viral ,Dioscorea bulbifera ,[SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT] ,Molecular Sequence Data ,Genome, Viral ,03 medical and health sciences ,Virology ,Plant virus ,Botany ,H20 - Maladies des plantes ,Plant Diseases ,030304 developmental biology ,Génome ,Biologie moléculaire ,Genetic Variation ,Sequence Analysis, DNA ,biology.organism_classification ,010606 plant biology & botany - Abstract
International audience; The genome of yam virus X (YVX), a new member of the genus Potexvirus from yam (Dioscorea trifida), was completely sequenced. Structural and phylogenetic analysis showed that the closest relative of YVX is nerine virus X. A prevalence study found YVX only in plants maintained in Guadeloupe and showed that it also infects members of the complex D. cayenensis rotundata. This study provides evidence for the existence of two additional potexviruses, one of which infects D. nummularia in Vanuatu and the other, D. bulbifera and D. rotundata in Haiti and D. trifida and D. rotundata in Guadeloupe. This work also shows that existing potexvirus-specific degenerate primers targeting the ORF1-encoded polymerase domain are well suited for the identification of the three potexviruses reported here.
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- 2014
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8. Genetic relationship between Dioscorea alala L. and D. nummularia Lam. as revealed by AFLP markers
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Malapa, Roger, Noyer, Jean-Louis, Marchand, Jean-Leu, and Lebot, Vincent
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Phylogénie ,Dioscorea nummularia ,Biologie moléculaire ,Taxonomie ,F30 - Génétique et amélioration des plantes ,Dioscorea alata ,Anatomie végétale ,F70 - Taxonomie végétale et phyto-géographie ,Marqueur génétique ,Éthnobotanique - Published
- 2006
9. Genetic relationship between Dioscorea alata L. and D. nummulariam Lam. as revealed by AFLP markers
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Malapa, Roger, Noyer, Jean-Louis, and Lebot, Vincent
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Phylogénie ,Dioscorea nummularia ,Biologie moléculaire ,Taxonomie ,Classification ,F30 - Génétique et amélioration des plantes ,Dioscorea alata ,Anatomie végétale ,F70 - Taxonomie végétale et phyto-géographie ,Éthnobotanique - Published
- 2002
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