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Recent developments in diffusion models have advanced conditioned image generation, yet they struggle with reconstructing out-of-distribution (OOD) images, such as unseen tumors in medical images, causing "image hallucination" and risking misdiagnosis. We hypothesize such hallucinations result from local OOD regions in the conditional images. We verify that partitioning the OOD region and conducting separate image generations alleviates hallucinations in several applications. From this, we propose a training-free diffusion framework that reduces hallucination with multiple Local Diffusion processes. Our approach involves OOD estimation followed by two modules: a "branching" module generates locally both within and outside OOD regions, and a "fusion" module integrates these predictions into one. Our evaluation shows our method mitigates hallucination over baseline models quantitatively and qualitatively, reducing misdiagnosis by 40% and 25% in the real-world medical and natural image datasets, respectively. It also demonstrates compatibility with various pre-trained diffusion models.

We investigate the potential of patent data for improving the antibody humanness prediction using a multi-stage, multi-loss training process. Humanness serves as a proxy for the immunogenic response to antibody therapeutics, one of the major causes of attrition in drug discovery and a challenging obstacle for their use in clinical settings. We pose the initial learning stage as a weakly-supervised contrastive-learning problem, where each antibody sequence is associated with possibly multiple identifiers of function and the objective is to learn an encoder that groups them according to their patented properties. We then freeze a part of the contrastive encoder and continue training it on the patent data using the cross-entropy loss to predict the humanness score of a given antibody sequence. We illustrate the utility of the patent data and our approach by performing inference on three different immunogenicity datasets, unseen during training. Our empirical results demonstrate that the learned model consistently outperforms the alternative baselines and establishes new state-of-the-art on five out of six inference tasks, irrespective of the used metric., Comment: ICML 2024, 14 pages, 6 figures, Code: https://github.com/AstraZeneca/SelfPAD

Textural Inversion, a prompt learning method, learns a singular text embedding for a new "word" to represent image style and appearance, allowing it to be integrated into natural language sentences to generate novel synthesised images. However, identifying multiple unknown object-level concepts within one scene remains a complex challenge. While recent methods have resorted to cropping or masking individual images to learn multiple concepts, these techniques often require prior knowledge of new concepts and are labour-intensive. To address this challenge, we introduce Multi-Concept Prompt Learning (MCPL), where multiple unknown "words" are simultaneously learned from a single sentence-image pair, without any imagery annotations. To enhance the accuracy of word-concept correlation and refine attention mask boundaries, we propose three regularisation techniques: Attention Masking, Prompts Contrastive Loss, and Bind Adjective. Extensive quantitative comparisons with both real-world categories and biomedical images demonstrate that our method can learn new semantically disentangled concepts. Our approach emphasises learning solely from textual embeddings, using less than 10% of the storage space compared to others. The project page, code, and data are available at https://astrazeneca.github.io/mcpl.github.io., Comment: ICML 2024; project page: https://astrazeneca.github.io/mcpl.github.io

Supervised training of deep learning models for medical imaging applications requires a significant amount of labeled data. This is posing a challenge as the images are required to be annotated by medical professionals. To address this limitation, we introduce the Adaptive Locked Agnostic Network (ALAN), a concept involving self-supervised visual feature extraction using a large backbone model to produce anatomically robust semantic self-segmentation. In the ALAN methodology, this self-supervised training occurs only once on a large and diverse dataset. Due to the intuitive interpretability of the segmentation, downstream models tailored for specific tasks can be easily designed using white-box models with few parameters. This, in turn, opens up the possibility of communicating the inner workings of a model with domain experts and introducing prior knowledge into it. It also means that the downstream models become less data-hungry compared to fully supervised approaches. These characteristics make ALAN particularly well-suited for resource-scarce scenarios, such as costly clinical trials and rare diseases. In this paper, we apply the ALAN approach to three publicly available echocardiography datasets: EchoNet-Dynamic, CAMUS, and TMED-2. Our findings demonstrate that the self-supervised backbone model robustly identifies anatomical subregions of the heart in an apical four-chamber view. Building upon this, we design two downstream models, one for segmenting a target anatomical region, and a second for echocardiogram view classification., Comment: The article was accepted to ICCV 2023 workshop PerDream: PERception, Decision making and REAsoning through Multimodal foundational modeling

In online applications with streaming data, awareness of how far the training or test set has shifted away from the original dataset can be crucial to the performance of the model. However, we may not have access to historical samples in the data stream. To cope with such situations, we propose a novel method, Continual Density Ratio Estimation (CDRE), for estimating density ratios between the initial and current distributions ($p/q_t$) of a data stream in an iterative fashion without the need of storing past samples, where $q_t$ is shifting away from $p$ over time $t$. We demonstrate that CDRE can be more accurate than standard DRE in terms of estimating divergences between distributions, despite not requiring samples from the original distribution. CDRE can be applied in scenarios of online learning, such as importance weighted covariate shift, tracing dataset changes for better decision making. In addition, (CDRE) enables the evaluation of generative models under the setting of continual learning. To the best of our knowledge, there is no existing method that can evaluate generative models in continual learning without storing samples from the original distribution.

Anomaly detection at scale is an extremely challenging problem of great practicality. When data is large and high-dimensional, it can be difficult to detect which observations do not fit the expected behaviour. Recent work has coalesced on variations of (random) $k$\emph{d-trees} to summarise data for anomaly detection. However, these methods rely on ad-hoc score functions that are not easy to interpret, making it difficult to asses the severity of the detected anomalies or select a reasonable threshold in the absence of labelled anomalies. To solve these issues, we contextualise these methods in a probabilistic framework which we call the Mondrian \Polya{} Forest for estimating the underlying probability density function generating the data and enabling greater interpretability than prior work. In addition, we develop a memory efficient variant able to operate in the modern streaming environments. Our experiments show that these methods achieves state-of-the-art performance while providing statistically interpretable anomaly scores.

The use of episodic memory in continual learning has demonstrated effectiveness for alleviating catastrophic forgetting. In recent studies, gradient-based approaches have been developed to make more efficient use of compact episodic memory. Such approaches refine the gradients resulting from new samples by those from memorized samples, aiming to reduce the diversity of gradients from different tasks. In this paper, we clarify the relation between diversity of gradients and discriminativeness of representations, showing shared as well as conflicting interests between Deep Metric Learning and continual learning, thus demonstrating pros and cons of learning discriminative representations in continual learning. Based on these findings, we propose a simple method -- Semi-Discriminative Representation Loss (SDRL) -- for continual learning. In comparison with state-of-the-art methods, SDRL shows better performance with low computational cost on multiple benchmark tasks in the setting of online continual learning.

Continual Learning (CL) algorithms incrementally learn a predictor or representation across multiple sequentially observed tasks. Designing CL algorithms that perform reliably and avoid so-called catastrophic forgetting has proven a persistent challenge. The current paper develops a theoretical approach that explains why. In particular, we derive the computational properties which CL algorithms would have to possess in order to avoid catastrophic forgetting. Our main finding is that such optimal CL algorithms generally solve an NP-hard problem and will require perfect memory to do so. The findings are of theoretical interest, but also explain the excellent performance of CL algorithms using experience replay, episodic memory and core sets relative to regularization-based approaches., Comment: Accepted for publication at ICML (International Conference on Machine Learning) 2020; 13 pages, 8 Figures

A suitable similarity index for comparing learnt neural networks plays an important role in understanding the behaviour of the highly-nonlinear functions, and can provide insights on further theoretical analysis and empirical studies. We define two key steps when comparing models: firstly, the representation abstracted from the learnt model, where we propose to leverage both feature vectors and gradient ones (which are largely ignored in prior work) into designing the representation of a neural network. Secondly, we define the employed similarity index which gives desired invariance properties, and we facilitate the chosen ones with sketching techniques for comparing various datasets efficiently. Empirically, we show that the proposed approach provides a state-of-the-art method for computing similarity of neural networks that are trained independently on different datasets and the tasks defined by the datasets.

Guaranteeing a certain level of user privacy in an arbitrary piece of text is a challenging issue. However, with this challenge comes the potential of unlocking access to vast data stores for training machine learning models and supporting data driven decisions. We address this problem through the lens of dx-privacy, a generalization of Differential Privacy to non Hamming distance metrics. In this work, we explore word representations in Hyperbolic space as a means of preserving privacy in text. We provide a proof satisfying dx-privacy, then we define a probability distribution in Hyperbolic space and describe a way to sample from it in high dimensions. Privacy is provided by perturbing vector representations of words in high dimensional Hyperbolic space to obtain a semantic generalization. We conduct a series of experiments to demonstrate the tradeoff between privacy and utility. Our privacy experiments illustrate protections against an authorship attribution algorithm while our utility experiments highlight the minimal impact of our perturbations on several downstream machine learning models. Compared to the Euclidean baseline, we observe > 20x greater guarantees on expected privacy against comparable worst case statistics., Comment: Accepted at ICDM 2019

Accurately learning from user data while providing quantifiable privacy guarantees provides an opportunity to build better ML models while maintaining user trust. This paper presents a formal approach to carrying out privacy preserving text perturbation using the notion of dx-privacy designed to achieve geo-indistinguishability in location data. Our approach applies carefully calibrated noise to vector representation of words in a high dimension space as defined by word embedding models. We present a privacy proof that satisfies dx-privacy where the privacy parameter epsilon provides guarantees with respect to a distance metric defined by the word embedding space. We demonstrate how epsilon can be selected by analyzing plausible deniability statistics backed up by large scale analysis on GloVe and fastText embeddings. We conduct privacy audit experiments against 2 baseline models and utility experiments on 3 datasets to demonstrate the tradeoff between privacy and utility for varying values of epsilon on different task types. Our results demonstrate practical utility (< 2% utility loss for training binary classifiers) while providing better privacy guarantees than baseline models., Comment: Accepted at WSDM 2020

This paper describes HyperStream, a large-scale, flexible and robust software package, written in the Python language, for processing streaming data with workflow creation capabilities. HyperStream overcomes the limitations of other computational engines and provides high-level interfaces to execute complex nesting, fusion, and prediction both in online and offline forms in streaming environments. HyperStream is a general purpose tool that is well-suited for the design, development, and deployment of Machine Learning algorithms and predictive models in a wide space of sequential predictive problems. Source code, installation instructions, examples, and documentation can be found at: https://github.com/IRC-SPHERE/HyperStream.

Differential privacy is a mathematical framework for privacy-preserving data analysis. Changing the hyperparameters of a differentially private algorithm allows one to trade off privacy and utility in a principled way. Quantifying this trade-off in advance is essential to decision-makers tasked with deciding how much privacy can be provided in a particular application while maintaining acceptable utility. Analytical utility guarantees offer a rigorous tool to reason about this trade-off, but are generally only available for relatively simple problems. For more complex tasks, such as training neural networks under differential privacy, the utility achieved by a given algorithm can only be measured empirically. This paper presents a Bayesian optimization methodology for efficiently characterizing the privacy--utility trade-off of any differentially private algorithm using only empirical measurements of its utility. The versatility of our method is illustrated on a number of machine learning tasks involving multiple models, optimizers, and datasets., Comment: Proceedings on Privacy Enhancing Technologies 2020

We are concerned with obtaining well-calibrated output distributions from regression models. Such distributions allow us to quantify the uncertainty that the model has regarding the predicted target value. We introduce the novel concept of distribution calibration, and demonstrate its advantages over the existing definition of quantile calibration. We further propose a post-hoc approach to improving the predictions from previously trained regression models, using multi-output Gaussian Processes with a novel Beta link function. The proposed method is experimentally verified on a set of common regression models and shows improvements for both distribution-level and quantile-level calibration., Comment: ICML 2019, 10 pages

Continual learning aims to enable machine learning models to learn a general solution space for past and future tasks in a sequential manner. Conventional models tend to forget the knowledge of previous tasks while learning a new task, a phenomenon known as catastrophic forgetting. When using Bayesian models in continual learning, knowledge from previous tasks can be retained in two ways: 1). posterior distributions over the parameters, containing the knowledge gained from inference in previous tasks, which then serve as the priors for the following task; 2). coresets, containing knowledge of data distributions of previous tasks. Here, we show that Bayesian continual learning can be facilitated in terms of these two means through the use of natural gradients and Stein gradients respectively.

Active learning holds promise of significantly reducing data annotation costs while maintaining reasonable model performance. However, it requires sending data to annotators for labeling. This presents a possible privacy leak when the training set includes sensitive user data. In this paper, we describe an approach for carrying out privacy preserving active learning with quantifiable guarantees. We evaluate our approach by showing the tradeoff between privacy, utility and annotation budget on a binary classification task in a active learning setting., Comment: To appear at PAL: Privacy-Enhancing Artificial Intelligence and Language Technologies as part of the AAAI Spring Symposium Series (AAAI-SSS 2019)

This paper describes a reference architecture for self-maintaining systems that can learn continually, as data arrives. In environments where data evolves, we need architectures that manage Machine Learning (ML) models in production, adapt to shifting data distributions, cope with outliers, retrain when necessary, and adapt to new tasks. This represents continual AutoML or Automatically Adaptive Machine Learning. We describe the challenges and proposes a reference architecture., Comment: Presented at the NeurIPS 2018 workshop on Continual Learning https://sites.google.com/view/continual2018/home

Item Response Theory (IRT) aims to assess latent abilities of respondents based on the correctness of their answers in aptitude test items with different difficulty levels. In this paper, we propose the $\beta^3$-IRT model, which models continuous responses and can generate a much enriched family of Item Characteristic Curve (ICC). In experiments we applied the proposed model to data from an online exam platform, and show our model outperforms a more standard 2PL-ND model on all datasets. Furthermore, we show how to apply $\beta^3$-IRT to assess the ability of machine learning classifiers. This novel application results in a new metric for evaluating the quality of the classifier's probability estimates, based on the inferred difficulty and discrimination of data instances.

There is a widely-accepted need to revise current forms of health-care provision, with particular interest in sensing systems in the home. Given a multiple-modality sensor platform with heterogeneous network connectivity, as is under development in the Sensor Platform for HEalthcare in Residential Environment (SPHERE) Interdisciplinary Research Collaboration (IRC), we face specific challenges relating to the fusion of the heterogeneous sensor modalities. We introduce Bayesian models for sensor fusion, which aims to address the challenges of fusion of heterogeneous sensor modalities. Using this approach we are able to identify the modalities that have most utility for each particular activity, and simultaneously identify which features within that activity are most relevant for a given activity. We further show how the two separate tasks of location prediction and activity recognition can be fused into a single model, which allows for simultaneous learning an prediction for both tasks. We analyse the performance of this model on data collected in the SPHERE house, and show its utility. We also compare against some benchmark models which do not have the full structure,and show how the proposed model compares favourably to these methods, Comment: Journal article. 19 pages; 7 figures

This paper outlines the Sensor Platform for HEalthcare in Residential Environment (SPHERE) project and details the SPHERE challenge that will take place in conjunction with European Conference on Machine Learning and Principles and Practice of Knowledge Discovery (ECML-PKDD) between March and July 2016. The SPHERE challenge is an activity recognition competition where predictions are made from video, accelerometer and environmental sensors. Monetary prizes will be awarded to the top three entrants, with Euro 1,000 being awarded to the winner, Euro 600 being awarded to the first runner up, and Euro 400 being awarded to the second runner up., Comment: Paper describing dataset. 11 pages; 4 figures

We present a derivation of the Kullback Leibler (KL)-Divergence (also known as Relative Entropy) for the von Mises Fisher (VMF) Distribution in $d$-dimensions., Comment: 8 pages 1 figure

We propose a method to efficiently construct data-dependent kernels which can make use of large quantities of (unlabeled) data. Our construction makes an approximation in the standard construction of semi-supervised kernels in Sindhwani et al. 2005. In typical cases these kernels can be computed in nearly-linear time (in the amount of data), improving on the cubic time of the standard construction, enabling large scale semi-supervised learning in a variety of contexts. The methods are validated on semi-supervised and unsupervised problems on data sets containing upto 64,000 sample points.

Section 1.3 was incorrect, and 2.1 will be removed from further submissions. A rewritten version will be posted in the future., Comment: This paper has been withdrawn