1. Adaptation of hepatitis C virus to interferon lambda polymorphism across multiple viral genotypes
- Author
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Nimisha Chaturvedi, Evguenia S Svarovskaia, Hongmei Mo, Anu O Osinusi, Diana M Brainard, G Mani Subramanian, John G McHutchison, Stefan Zeuzem, and Jacques Fellay
- Subjects
genome to genome analysis ,Hepatitis C ,interferon lambda polymorphism ,integration analysis ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Genetic polymorphism in the interferon lambda (IFN-λ) region is associated with spontaneous clearance of hepatitis C virus (HCV) infection and response to interferon-based treatment. Here, we evaluate associations between IFN-λ polymorphism and HCV variation in 8729 patients (Europeans 77%, Asians 13%, Africans 8%) infected with various viral genotypes, predominantly 1a (41%), 1b (22%) and 3a (21%). We searched for associations between rs12979860 genotype and variants in the NS3, NS4A, NS5A and NS5B HCV proteins. We report multiple associations in all tested proteins, including in the interferon-sensitivity determining region of NS5A. We also assessed the combined impact of human and HCV variation on pretreatment viral load and report amino acids associated with both IFN-λ polymorphism and HCV load across multiple viral genotypes. By demonstrating that IFN-λ variation leaves a large footprint on the viral proteome, we provide evidence of pervasive viral adaptation to innate immune pressure during chronic HCV infection.
- Published
- 2019
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