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1. An amplicon-based sequencing approach for Usutu virus characterization

2. Integrative analysis of transcriptomic and immunoproteomic data reveals stress response mechanisms in Listeria monocytogenes

3. Spatial and temporal dynamics of West Nile virus between Africa and Europe

4. Severe Streptococcus equi Subspecies zooepidemicus Outbreak from Unpasteurized Dairy Product Consumption, Italy

5. Evaluation of next generation sequencing approaches for SARS-CoV-2

7. Coxiella burnetii : A Brief Summary of the Last Five Years of Its Presence in the Abruzzo and Molise Regions in Italy.

8. Exposure of Mytilus galloprovincialis to Microplastics: Accumulation, Depuration and Evaluation of the Expression Levels of a Selection of Molecular Biomarkers

11. Identification of IncA Plasmid, Harboring blaVIM-1 Gene, in S. enterica Goldcoast ST358 and C. freundii ST62 Isolated in a Hospitalized Patient

14. Tick Species Diversity and Molecular Identification of Spotted Fever Group Rickettsiae Collected from Migratory Birds Arriving from Africa

15. Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry

17. Exposure of Mytilus galloprovincialis to Microplastics: Accumulation, Depuration and Evaluation of the Expression Levels of a Selection of Molecular Biomarkers.

18. Identification of IncA Plasmid, Harboring bla VIM-1 Gene, in S. enterica Goldcoast ST358 and C. freundii ST62 Isolated in a Hospitalized Patient.

19. Novel Amplicon-Based Sequencing Approach to West Nile Virus

24. Validation of AmpliSeq NGS Panel for BRCA1 and BRCA2 Variant Detection in Canine Formalin-Fixed Paraffin-Embedded Mammary Tumors

25. FARMED Deliverable D-JRP12-WP 3.5 Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens

26. Report on initial findings and protocols for on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens : Deliverable D-JRP12-WP 3.2, 3.3, 3.4 & 3.5

28. Report on an initial assessment of long-read sequencing for metagenome (community, spiked and real simple and complex matrices) and comparison to current short-read standard

30. Phylogenetic Analysis and Genome-Wide Association Study Applied to an Italian Listeria monocytogenes Outbreak

32. Infection sustained by lineage B.1.1.7 of SARS-CoV-2 is characterised by longer persistence and higher viral RNA loads in nasopharyngeal swabs

33. Intensive Environmental Surveillance Plan for Listeria monocytogenes in Food Producing Plants and Retail Stores of Central Italy: Prevalence and Genetic Diversity

34. Whole-Genome Sequences of SARS-CoV-2 Lineage B.1.525 Strains (Variant η) Detected from Patients in the Abruzzo Region (Central Italy) during Spring 2021

35. Draft Genome Sequence of Serratia rubidaea, a Potential Opportunistic Pathogen Isolated from Food in Italy

37. D-JRP12-WP3.1 Review on current scientific literature and overview of commercially available methods for on-site DNA isolation : JRP12-AMRSH5-FARMED

39. A large food-borne outbreak of campylobacteriosis in kindergartens and primary schools in Pescara, Italy, May–June 2018

41. SARS-CoV-2 replicates in respiratory ex vivo organ cultures of domestic ruminant species

43. Fluctuating asymmetry, mating success, body size and heterozygosity in Coenagrion scitulum

44. Genetic Characterization of a Listeria monocytogenes Serotype IVb Variant 1 Strain Isolated from Vegetal Matrix in Italy

45. Detection of Astrovirus in a Cow with Neurological Signs by Nanopore Technology, Italy

47. A Real-Time PCR Screening Assay for Rapid Detection of Listeria Monocytogenes Outbreak Strains

50. Whole-Genome Sequence of Listeria monocytogenes Serovar 1/2a Strain IZSAM_Lm_15_17439_A144, Representative of a Human Outbreak in 2008

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