27 results on '"Desprez-Loustau ML"'
Search Results
2. Variabilité interraciale de la sensibilité à la rouille courbeuse chez le pin maritime
- Author
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Desprez-Loustau, Ml, Baradat, P, and Revues Inra, Import
- Subjects
[SDV.SA.SF] Life Sciences [q-bio]/Agricultural sciences/Silviculture, forestry ,ComputingMilieux_MISCELLANEOUS - Published
- 1991
3. Analyse diallèle et intégration de la sensibilité à la rouille courbeuse dans le programme d'amélioration du pin maritime
- Author
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Baradat, P, primary and Desprez-Loustau, ML, additional
- Published
- 1997
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4. Modelling the influence of winter frosts on the development of the stem canker of red oak, caused by Phytophthora cinnamomi
- Author
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Marçais, B, primary, Dupuis, F, additional, and Desprez-Loustau, ML, additional
- Published
- 1996
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5. Variation in the phenology of shoot elongation between geographic provenances of maritime pine (Pinus pinaster) - implications for the synchrony with the phenology of the twisting rust fungus, Melampsora pinitorqua
- Author
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Desprez-Loustau, ML, primary and Dupuis, F, additional
- Published
- 1994
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6. Variabilité interraciale de la sensibilité à la rouille courbeuse chez le pin maritime
- Author
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Desprez-Loustau, ML, primary and Baradat, P, additional
- Published
- 1991
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7. Airborne DNA reveals predictable spatial and seasonal dynamics of fungi.
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Abrego N, Furneaux B, Hardwick B, Somervuo P, Palorinne I, Aguilar-Trigueros CA, Andrew NR, Babiy UV, Bao T, Bazzano G, Bondarchuk SN, Bonebrake TC, Brennan GL, Bret-Harte S, Bässler C, Cagnolo L, Cameron EK, Chapurlat E, Creer S, D'Acqui LP, de Vere N, Desprez-Loustau ML, Dongmo MAK, Jacobsen IBD, Fisher BL, Flores de Jesus M, Gilbert GS, Griffith GW, Gritsuk AA, Gross A, Grudd H, Halme P, Hanna R, Hansen J, Hansen LH, Hegbe ADMT, Hill S, Hogg ID, Hultman J, Hyde KD, Hynson NA, Ivanova N, Karisto P, Kerdraon D, Knorre A, Krisai-Greilhuber I, Kurhinen J, Kuzmina M, Lecomte N, Lecomte E, Loaiza V, Lundin E, Meire A, Mešić A, Miettinen O, Monkhouse N, Mortimer P, Müller J, Nilsson RH, Nonti PYC, Nordén J, Nordén B, Norros V, Paz C, Pellikka P, Pereira D, Petch G, Pitkänen JM, Popa F, Potter C, Purhonen J, Pätsi S, Rafiq A, Raharinjanahary D, Rakos N, Rathnayaka AR, Raundrup K, Rebriev YA, Rikkinen J, Rogers HMK, Rogovsky A, Rozhkov Y, Runnel K, Saarto A, Savchenko A, Schlegel M, Schmidt NM, Seibold S, Skjøth C, Stengel E, Sutyrina SV, Syvänperä I, Tedersoo L, Timm J, Tipton L, Toju H, Uscka-Perzanowska M, van der Bank M, van der Bank FH, Vandenbrink B, Ventura S, Vignisson SR, Wang X, Weisser WW, Wijesinghe SN, Wright SJ, Yang C, Yorou NS, Young A, Yu DW, Zakharov EV, Hebert PDN, Roslin T, and Ovaskainen O
- Subjects
- Mycorrhizae genetics, Mycorrhizae classification, Mycorrhizae isolation & purification, Phylogeny, Spores, Fungal classification, Spores, Fungal isolation & purification, Temperature, Tropical Climate, Geographic Mapping, Air Microbiology, Biodiversity, DNA, Fungal analysis, DNA, Fungal genetics, Fungi genetics, Fungi classification, Fungi isolation & purification, Seasons, Spatio-Temporal Analysis
- Abstract
Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions
1,2 . To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores3 . The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms4,5 ., (© 2024. The Author(s).)- Published
- 2024
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8. Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA.
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Ovaskainen O, Abrego N, Furneaux B, Hardwick B, Somervuo P, Palorinne I, Andrew NR, Babiy UV, Bao T, Bazzano G, Bondarchuk SN, Bonebrake TC, Brennan GL, Bret-Harte S, Bässler C, Cagnolo L, Cameron EK, Chapurlat E, Creer S, D'Acqui LP, de Vere N, Desprez-Loustau ML, Dongmo MAK, Dyrholm Jacobsen IB, Fisher BL, Flores de Jesus M, Gilbert GS, Griffith GW, Gritsuk AA, Gross A, Grudd H, Halme P, Hanna R, Hansen J, Hansen LH, Hegbe ADMT, Hill S, Hogg ID, Hultman J, Hyde KD, Hynson NA, Ivanova N, Karisto P, Kerdraon D, Knorre A, Krisai-Greilhuber I, Kurhinen J, Kuzmina M, Lecomte N, Lecomte E, Loaiza V, Lundin E, Meire A, Mešić A, Miettinen O, Monkhause N, Mortimer P, Müller J, Nilsson RH, Nonti PYC, Nordén J, Nordén B, Paz C, Pellikka P, Pereira D, Petch G, Pitkänen JM, Popa F, Potter C, Purhonen J, Pätsi S, Rafiq A, Raharinjanahary D, Rakos N, Rathnayaka AR, Raundrup K, Rebriev YA, Rikkinen J, Rogers HMK, Rogovsky A, Rozhkov Y, Runnel K, Saarto A, Savchenko A, Schlegel M, Schmidt NM, Seibold S, Skjøth C, Stengel E, Sutyrina SV, Syvänperä I, Tedersoo L, Timm J, Tipton L, Toju H, Uscka-Perzanowska M, van der Bank M, Herman van der Bank F, Vandenbrink B, Ventura S, Vignisson SR, Wang X, Weisser WW, Wijesinghe SN, Joseph Wright S, Yang C, Yorou NS, Young A, Yu DW, Zakharov EV, Hebert PDN, and Roslin T
- Subjects
- Fungi genetics, Fungi classification, Biodiversity, Air Microbiology, Spores, Fungal, DNA, Fungal analysis
- Abstract
Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m
3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition., (© 2024. The Author(s).)- Published
- 2024
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9. A Global Assessment of the State of Plant Health.
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Acuña I, Andrade-Piedra J, Andrivon D, Armengol J, Arnold AE, Avelino J, Bandyopadhyay R, Bihon Legesse W, Bock CH, Bove F, Brenes-Arguedas T, Calonnec A, Carmona M, Carnegie AJ, Castilla NP, Chen X, Coletta-Filho HD, Coley PD, Cox KD, Davey T, Del Ponte E, Denman S, Desprez-Loustau ML, Dewdney MM, Djurle A, Drenth A, Ducousso A, Esker P, Fiaboe KM, Fourie PH, Frankel SJ, Frey P, Garcia-Figuera S, Garrett KA, Guérin M, Hardy GESJ, Hausladen H, Hu X, Hüberli D, Juzwik J, Kang Z, Kenyon L, Kreuze J, Kromann P, Kubiriba J, Kuhnem P, Kumar J, Kumar PL, Lebrun MH, Legg JP, Leon A, Ma Z, Mahuku G, Makinson RO, Marzachi C, McDonald BA, McRoberts N, Menkir A, Mikaberidze A, Munck IA, Nelson A, Nguyen NTT, O’Gara E, Ojiambo P, Ortega-Beltran A, Paul P, Pethybridge S, Pinon J, Ramsfield T, Rizzo DM, Rossi V, Safni I, Sah S, Santini A, Sautua F, Savary S, Schreinemachers P, Singh M, Spear ER, Srinivasan R, Tripathi L, Vicent A, Viljoen A, Willocquet L, Woods AJ, Wu B, Xia X, Xu X, Yuen J, Zalamea PC, and Zhou C
- Subjects
- Agriculture, Plants, Soil, Ecosystem, Plant Breeding
- Abstract
The Global Plant Health Assessment (GPHA) is a collective, volunteer-based effort to assemble expert opinions on plant health and disease impacts on ecosystem services based on published scientific evidence. The GPHA considers a range of forest, agricultural, and urban systems worldwide. These are referred to as (Ecoregion × Plant System), i.e., selected case examples involving keystone plants in given parts of the world. The GPHA focuses on infectious plant diseases and plant pathogens, but encompasses the abiotic (e.g., temperature, drought, and floods) and other biotic (e.g., animal pests and humans) factors associated with plant health. Among the 33 (Ecoregion × Plant System) considered, 18 are assessed as in fair or poor health, and 20 as in declining health. Much of the observed state of plant health and its trends are driven by a combination of forces, including climate change, species invasions, and human management. Healthy plants ensure (i) provisioning (food, fiber, and material), (ii) regulation (climate, atmosphere, water, and soils), and (iii) cultural (recreation, inspiration, and spiritual) ecosystem services. All these roles that plants play are threatened by plant diseases. Nearly none of these three ecosystem services are assessed as improving. Results indicate that the poor state of plant health in sub-Saharan Africa gravely contributes to food insecurity and environmental degradation. Results further call for the need to improve crop health to ensure food security in the most populated parts of the world, such as in South Asia, where the poorest of the poor, the landless farmers, are at the greatest risk. The overview of results generated from this work identifies directions for future research to be championed by a new generation of scientists and revived public extension services. Breakthroughs from science are needed to (i) gather more data on plant health and its consequences, (ii) identify collective actions to manage plant systems, (iii) exploit the phytobiome diversity in breeding programs, (iv) breed for plant genotypes with resilience to biotic and abiotic stresses, and (v) design and implement plant systems involving the diversity required to ensure their adaptation to current and growing challenges, including climate change and pathogen invasions., Competing Interests: The author(s) declare no conflict of interest.
- Published
- 2023
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10. Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine.
- Author
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Hurel A, de Miguel M, Dutech C, Desprez-Loustau ML, Plomion C, Rodríguez-Quilón I, Cyrille A, Guzman T, Alía R, González-Martínez SC, and Budde KB
- Abstract
Forest ecosystems are increasingly challenged by extreme events, for example, drought, storms, pest attacks, and fungal pathogen outbreaks, causing severe ecological and economic losses. Understanding the genetic basis of adaptive traits in tree species is of key importance to preserve forest ecosystems, as genetic variation in a trait (i.e., heritability) determines its potential for human-mediated or evolutionary change. Maritime pine ( Pinus pinaster Aiton), a conifer widely distributed in southwestern Europe and northwestern Africa, grows under contrasted environmental conditions promoting local adaptation. Genetic variation at adaptive phenotypes, including height, spring phenology, and susceptibility to two fungal pathogens ( Diplodia sapinea and Armillaria ostoyae ) and an insect pest ( Thaumetopoea pityocampa ), was assessed in a range-wide clonal common garden of maritime pine. Broad-sense heritability was significant for height (0.219), spring phenology (0.165-0.310), and pathogen susceptibility (necrosis length caused by D . sapinea , 0.152; and by A . ostoyae , 0.021, measured on inoculated, excised branches under controlled conditions), but not for pine processionary moth incidence in the common garden. The correlations of trait variation among populations revealed contrasting trends for pathogen susceptibility to D . sapinea and A . ostoyae with respect to height. Taller trees showed longer necrosis length caused by D . sapinea while shorter trees were more affected by A . ostoyae . Moreover, maritime pine populations from areas with high summer temperatures and frequent droughts were less susceptible to D . sapinea but more susceptible to A . ostoyae . Finally, an association study using 4227 genome-wide SNPs revealed several loci significantly associated with each trait (range of 3-26), including a possibly disease-induced translation initiation factor, eIF-5, associated with needle discoloration caused by D . sapinea . This study provides important insights to develop genetic conservation and breeding strategies integrating species responses to biotic stressors., Competing Interests: We declare no conflict of interest., (© 2021 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd.)
- Published
- 2021
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11. The genetics of exapted resistance to two exotic pathogens in pedunculate oak.
- Author
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Bartholomé J, Brachi B, Marçais B, Mougou-Hamdane A, Bodénès C, Plomion C, Robin C, and Desprez-Loustau ML
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- Plant Diseases microbiology, Quantitative Trait Loci, Quercus microbiology, Ascomycota pathogenicity, Disease Resistance genetics, Phytophthora pathogenicity, Plant Diseases genetics, Quercus genetics
- Abstract
Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may occur in naive populations. The objective of this study was to investigate the genetics of this so-called 'exapted' resistance to two pathogens of Asian origin (Erysiphe alphitoides and Phytophthora cinnamomi) in European oak. Host-pathogen compatibility was assessed by recording infection success and pathogen growth in a full-sib family of Quercus robur under controlled and natural conditions. Two high-resolution genetic maps anchored on the reference genome were used to study the genetic architecture of resistance and to identify positional candidate genes. Two genomic regions, each containing six strong and stable quantitative trait loci (QTLs) accounting for 12-19% of the phenotypic variation, were mainly associated with E. alphitoides infection. Candidate genes, especially genes encoding receptor-like-kinases and galactinol synthases, were identified in these regions. The three QTLs associated with P. cinnamomi infection did not colocate with QTLs found for E. alphitoides. These findings provide evidence that exapted resistance to E. alphitoides and P. cinnamomi is present in Q. robur and suggest that the underlying molecular mechanisms involve genes encoding proteins with extracellular signaling functions., (© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.)
- Published
- 2020
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12. Invasive forest pathogens in Europe: Cross-country variation in public awareness but consistency in policy acceptability.
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Eriksson L, Boberg J, Cech TL, Corcobado T, Desprez-Loustau ML, Hietala AM, Jung MH, Jung T, Lehtijarvi HTD, Oskay F, Slavov S, Solheim H, Stenlid J, and Oliva J
- Subjects
- Europe, Surveys and Questionnaires, Forests, Policy
- Abstract
Political action can reduce introductions of diseases caused by invasive forest pathogens (IPs) and public support is important for effective prevention. The public's awareness of IP problems and the acceptability of policies aiming to combat these pathogens were surveyed in nine European countries (N = 3469). Although awareness of specific diseases (e.g., ash dieback) varied, problem awareness and policy acceptability were similar across countries. The public was positive towards policies for informational measures and stricter standards for plant production, but less positive towards restricting public access to protected areas. Multilevel models, including individual and country level variables, revealed that media exposure was positively associated with awareness of IP problems, and strengthened the link between problem awareness and policy acceptability. Results suggest that learning about IPs through the media and recognizing the associated problems increase policy acceptability. Overall, the study elaborates on the anthropogenic dimension of diseases caused by IPs.
- Published
- 2019
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13. Oak genome reveals facets of long lifespan.
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Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, Chantret N, Chen J, Diévart A, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rué O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, and Salse J
- Subjects
- Biological Evolution, DNA, Plant genetics, Genetic Variation genetics, Longevity genetics, Mutation, Phylogeny, Sequence Analysis, DNA, Genome, Plant genetics, Quercus genetics
- Abstract
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous in our most common landscapes
1 but they have also supplied human societies with invaluable services, including food and shelter, since prehistoric times2 . With 450 species spread throughout Asia, Europe and America3 , oaks constitute a critical global renewable resource. The longevity of oaks (several hundred years) probably underlies their emblematic cultural and historical importance. Such long-lived sessile organisms must persist in the face of a wide range of abiotic and biotic threats over their lifespans. We investigated the genomic features associated with such a long lifespan by sequencing, assembling and annotating the oak genome. We then used the growing number of whole-genome sequences for plants (including tree and herbaceous species) to investigate the parallel evolution of genomic characteristics potentially underpinning tree longevity. A further consequence of the long lifespan of trees is their accumulation of somatic mutations during mitotic divisions of stem cells present in the shoot apical meristems. Empirical4 and modelling5 approaches have shown that intra-organismal genetic heterogeneity can be selected for6 and provides direct fitness benefits in the arms race with short-lived pests and pathogens through a patchwork of intra-organismal phenotypes7 . However, there is no clear proof that large-statured trees consist of a genetic mosaic of clonally distinct cell lineages within and between branches. Through this case study of oak, we demonstrate the accumulation and transmission of somatic mutations and the expansion of disease-resistance gene families in trees.- Published
- 2018
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14. The emerging science of linked plant-fungal invasions.
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Dickie IA, Bufford JL, Cobb RC, Desprez-Loustau ML, Grelet G, Hulme PE, Klironomos J, Makiola A, Nuñez MA, Pringle A, Thrall PH, Tourtellot SG, Waller L, and Williams NM
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- Ecosystem, Fungi physiology, Host Specificity, Host-Pathogen Interactions physiology, Symbiosis, Fungi pathogenicity, Plants microbiology
- Abstract
Contents 1314 I. 1315 II. 1316 III. 1322 IV. 1323 V. 1325 VI. 1326 VII. 1326 VIII. 1327 1328 References 1328 SUMMARY: Invasions of alien plants are typically studied as invasions of individual species, yet interactions between plants and symbiotic fungi (mutualists and potential pathogens) affect plant survival, physiological traits, and reproduction and hence invasion success. Studies show that plant-fungal associations are frequently key drivers of plant invasion success and impact, but clear conceptual frameworks and integration across studies are needed to move beyond a series of case studies towards a more predictive understanding. Here, we consider linked plant-fungal invasions from the perspective of plant and fungal origin, simplified to the least complex representations or 'motifs'. By characterizing these interaction motifs, parallels in invasion processes between pathogen and mutualist fungi become clear, although the outcomes are often opposite in effect. These interaction motifs provide hypotheses for fungal-driven dynamics behind observed plant invasion trajectories. In some situations, the effects of plant-fungal interactions are inconsistent or negligible. Variability in when and where different interaction motifs matter may be driven by specificity in the plant-fungal interaction, the size of the effect of the symbiosis (negative to positive) on plants and the dependence (obligate to facultative) of the plant-fungal interaction. Linked plant-fungal invasions can transform communities and ecosystem function, with potential for persistent legacies preventing ecosystem restoration., (© 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.)
- Published
- 2017
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15. Further Support of Conspecificity of Oak and Mango Powdery Mildew and First Report of Erysiphe quercicola and Erysiphe alphitoides on Mango in Mainland Europe.
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Desprez-Loustau ML, Massot M, Feau N, Fort T, de Vicente A, Torés JA, and Ortuño DF
- Abstract
Mango leaves and inflorescences infected by powdery mildew in southern Spain were analyzed using multigene sequencing (ITS + 4 single-copy coding genes) to identify the causal agent. Erysiphe quercicola was detected in 97% out of 140 samples, collected in six different orchards in the Malaga region. Among these, a small proportion also yielded E. alphitoides (8% of all samples) and E. alphitoides was found alone in 3% of samples. A phylogenetic approach was completed by cross inoculations between oak and mango, which led to typical symptoms, supporting the conspecificity of oak and mango powdery mildews. To our knowledge, this is the first report of E. quercicola and E. alphitoides causing powdery mildew on mango trees in mainland Spain, and thus mainland Europe, based on unequivocal phylogenetic and biological evidence. Our study thus confirmed the broad host range of both E. quercicola and E. alphitoides. These results have practical implications in terms of the demonstrated ability for host range expansion in powdery mildews. They also open interesting prospects to the elucidation of molecular mechanisms underlying the ability to infect single versus multiple and unrelated host plants since these two closely related powdery mildew species belong to a small clade with both generalist and specialist powdery mildews.
- Published
- 2017
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16. Can Oak Powdery Mildew Severity be Explained by Indirect Effects of Climate on the Composition of the Erysiphe Pathogenic Complex?
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Marçais B, Piou D, Dezette D, and Desprez-Loustau ML
- Subjects
- Ascomycota genetics, Climate, Geography, Introduced Species, Logistic Models, Plant Shoots microbiology, Seasons, Temperature, Ascomycota growth & development, Plant Diseases microbiology, Quercus microbiology
- Abstract
Coinfection by several pathogens is increasingly recognized as an important feature in the epidemiology and evolution of plant fungal pathogens. Oak mildew is induced by two closely related Erysiphe invasive species (Erysiphe alphitoides and E. quercicola) which differ in their mode of overwintering. We investigated how climate influences the co-occurrence of the two species in oak young stands and whether this is important for the disease epidemiology. We studied the frequency of flag-shoots (i.e., shoots developing from infected buds, usually associated with E. quercicola) in 95 oak regenerations over a 6-year period. Additionally, in 2012 and 2013, the oak mildew severity and the two Erysiphe spp. relative frequencies were determined in both spring and autumn in 51 regenerations and 43 1-year-old plantations of oaks. Both the frequency of flag-shoots and the proportion of Erysiphe lesions with E. quercicola presence were related to climate. We showed that survival of E. quercicola was improved after mild winters, with increase of both the flag-shoot frequency and the proportion of Erysiphe lesions with E. quercicola presence in spring. However, disease severity was not related to any complementarity effect between the two Erysiphe spp. causing oak powdery mildew. By contrast, increased E. alphitoides prevalence in spring was associated with higher oak mildew severity in autumn. Our results point out the critical role of between-season transmission and primary inoculum to explain disease dynamics which could be significant in a climate-warming context.
- Published
- 2017
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17. Powdery Mildew Decreases the Radial Growth of Oak Trees with Cumulative and Delayed Effects over Years.
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Bert D, Lasnier JB, Capdevielle X, Dugravot A, and Desprez-Loustau ML
- Subjects
- France, Plant Leaves microbiology, Ascomycota, Plant Diseases microbiology, Quercus growth & development, Quercus microbiology
- Abstract
Quercus robur and Q. petraea are major European forest tree species. They have been affected by powdery mildew caused by Erysiphe alphitoides for more than a century. This fungus is a biotrophic foliar pathogen that diverts photosynthetate from the plant for its own nutrition. We used a dendrochronological approach to investigate the effects of different levels of infection severity on the radial growth of young oak trees. Oak infection was monitored at individual tree level, at two sites in southwestern France, over a five-year period (2001-2005). Mean infection severity was almost 75% (infected leaf area) at the end of the 2001 growing season, at both sites, but only about 40% in 2002, and 8%, 5% and 2% in 2003, 2004 and 2005, respectively. Infection levels varied considerably between trees and were positively related between 2001 and 2002. Increment cores were taken from each tree to assess annual ring widths and increases in basal area. Annual radial growth was standardised to take the effect of tree size into account. Annual standardised radial growth was significantly and negatively correlated with infection severity in the same year, for both 2001 and 2002, and at both sites. The decrease in growth reached 70-90% for highly infected trees. The earlywood width was poorly correlated with infection severity, but the proportion of latewood in tree rings was lower in highly infected trees (60%) than in less heavily infected trees (85%). Infection in 2001 and 2002 was found to have a cumulative effect on radial growth in these years, together with a delayed effect detectable in 2003. Thus, even non-lethal pathogens like powdery mildew can have a significant impact on tree functioning. This impact should be taken into account in growth and yield models, to improve predictions of forest net primary production.
- Published
- 2016
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18. Biogeographical patterns and determinants of invasion by forest pathogens in Europe.
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Santini A, Ghelardini L, De Pace C, Desprez-Loustau ML, Capretti P, Chandelier A, Cech T, Chira D, Diamandis S, Gaitniekis T, Hantula J, Holdenrieder O, Jankovsky L, Jung T, Jurc D, Kirisits T, Kunca A, Lygis V, Malecka M, Marcais B, Schmitz S, Schumacher J, Solheim H, Solla A, Szabò I, Tsopelas P, Vannini A, Vettraino AM, Webber J, Woodward S, and Stenlid J
- Subjects
- Climate, Ecosystem, Europe, Fungi classification, Fungi physiology, Geography, Linear Models, Plant Diseases microbiology, Population Density, Principal Component Analysis, Rain, Socioeconomic Factors, Temperature, Time Factors, Trees physiology, Databases, Factual, Fungi pathogenicity, Introduced Species, Trees microbiology
- Abstract
A large database of invasive forest pathogens (IFPs) was developed to investigate the patterns and determinants of invasion in Europe. Detailed taxonomic and biological information on the invasive species was combined with country-specific data on land use, climate, and the time since invasion to identify the determinants of invasiveness, and to differentiate the class of environments which share territorial and climate features associated with a susceptibility to invasion. IFPs increased exponentially in the last four decades. Until 1919, IFPs already present moved across Europe. Then, new IFPs were introduced mainly from North America, and recently from Asia. Hybrid pathogens also appeared. Countries with a wider range of environments, higher human impact or international trade hosted more IFPs. Rainfall influenced the diffusion rates. Environmental conditions of the new and original ranges and systematic and ecological attributes affected invasiveness. Further spread of established IFPs is expected in countries that have experienced commercial isolation in the recent past. Densely populated countries with high environmental diversity may be the weakest links in attempts to prevent new arrivals. Tight coordination of actions against new arrivals is needed. Eradication seems impossible, and prevention seems the only reliable measure, although this will be difficult in the face of global mobility., (© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.)
- Published
- 2013
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19. The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient.
- Author
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Cordier T, Robin C, Capdevielle X, Fabreguettes O, Desprez-Loustau ML, and Vacher C
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- Climate, France, Linear Models, Molecular Sequence Data, Multivariate Analysis, Weather, Altitude, Ecosystem, Fagus microbiology, Fungi physiology, Plant Leaves microbiology
- Abstract
Little is known about the potential effect of climate warming on phyllosphere fungi, despite their important impact on the dynamics and diversity of plant communities. The structure of phyllosphere fungal assemblages along elevation gradients may provide information about this potential effect, because elevation gradients correspond to temperature gradients over short geographic distances. We thus investigated variations in the composition of fungal assemblages inhabiting the phyllosphere of European beech (Fagus sylvatica) at four sites over a gradient of 1000 m of elevation in the French Pyrénées Mountains, by using tag-encoded 454 pyrosequencing. Our results show that the composition of fungal assemblages varied significantly between elevation sites, in terms of both the relative abundance and the presence-absence of species, and that the variations in assemblage composition were well correlated with variations in the average temperatures. Our results therefore suggest that climate warming might alter both the incidence and the abundance of phyllosphere fungal species, including potential pathogens. For example, Mycosphaerella punctiformis, a causal agent of leaf spots, showed decreasing abundance with elevation and might therefore shift to higher elevations in response to warming., (© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.)
- Published
- 2012
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20. Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi.
- Author
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Feau N, Decourcelle T, Husson C, Desprez-Loustau ML, and Dutech C
- Subjects
- Fungi classification, Polymerase Chain Reaction, Fungi genetics, Gene Dosage, Genes, Fungal, Phylogeny
- Abstract
Historically, fungal multigene phylogenies have been reconstructed based on a small number of commonly used genes. The availability of complete fungal genomes has given rise to a new wave of model organisms that provide large number of genes potentially useful for building robust gene genealogies. Unfortunately, cross-utilization of these resources to study phylogenetic relationships in the vast majority of non-model fungi (i.e. "orphan" species) remains an unexamined question. To address this problem, we developed a method coupled with a program named "PHYLORPH" (PHYLogenetic markers for ORPHans). The method screens fungal genomic databases (107 fungal genomes fully sequenced) for single copy genes that might be easily transferable and well suited for studies at low taxonomic levels (for example, in species complexes) in non-model fungal species. To maximize the chance to target genes with informative regions, PHYLORPH displays a graphical evaluation system based on the estimation of nucleotide divergence relative to substitution type. The usefulness of this approach was tested by developing markers in four non-model groups of fungal pathogens. For each pathogen considered, 7 to 40% of the 10-15 best candidate genes proposed by PHYLORPH yielded sequencing success. Levels of polymorphism of these genes were compared with those obtained for some genes traditionally used to build fungal phylogenies (e.g. nuclear rDNA, β-tubulin, γ-actin, Elongation factor EF-1α). These genes were ranked among the best-performing ones and resolved accurately taxa relationships in each of the four non-model groups of fungi considered. We envision that PHYLORPH will constitute a useful tool for obtaining new and accurate phylogenetic markers to resolve relationships between closely related non-model fungal species.
- Published
- 2011
- Full Text
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21. Socioeconomic legacy yields an invasion debt.
- Author
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Essl F, Dullinger S, Rabitsch W, Hulme PE, Hülber K, Jarošík V, Kleinbauer I, Krausmann F, Kühn I, Nentwig W, Vilà M, Genovesi P, Gherardi F, Desprez-Loustau ML, Roques A, and Pyšek P
- Subjects
- Animals, Databases, Factual, Demography, Europe, History, 20th Century, History, 21st Century, Humans, Models, Statistical, Population Dynamics, Regression Analysis, Socioeconomic Factors history, Time Factors, Fungi growth & development, Human Activities history, Introduced Species economics, Introduced Species history, Introduced Species trends, Invertebrates growth & development, Plant Development, Vertebrates growth & development
- Abstract
Globalization and economic growth are widely recognized as important drivers of biological invasions. Consequently, there is an increasing need for governments to address the role of international trade in their strategies to prevent species introductions. However, many of the most problematic alien species are not recent arrivals but were introduced several decades ago. Hence, current patterns of alien-species richness may better reflect historical rather than contemporary human activities, a phenomenon which might be called "invasion debt." Here, we show that across 10 taxonomic groups (vascular plants, bryophytes, fungi, birds, mammals, reptiles, amphibians, fish, terrestrial insects, and aquatic invertebrates) in 28 European countries, current numbers of alien species established in the wild are indeed more closely related to indicators of socioeconomic activity from the year 1900 than to those from 2000, although the majority of species introductions occurred during the second half of the 20th century. The strength of the historical signal varies among taxonomic groups, with those possessing good capabilities for dispersal (birds, insects) more strongly associated with recent socioeconomic drivers. Nevertheless, our results suggest a considerable historical legacy for the majority of the taxa analyzed. The consequences of the current high levels of socioeconomic activity on the extent of biological invasions will thus probably not be completely realized until several decades into the future.
- Published
- 2011
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22. Disentangling the role of environmental and human pressures on biological invasions across Europe.
- Author
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Pysek P, Jarosík V, Hulme PE, Kühn I, Wild J, Arianoutsou M, Bacher S, Chiron F, Didziulis V, Essl F, Genovesi P, Gherardi F, Hejda M, Kark S, Lambdon PW, Desprez-Loustau ML, Nentwig W, Pergl J, Poboljsaj K, Rabitsch W, Roques A, Roy DB, Shirley S, Solarz W, Vilà M, and Winter M
- Subjects
- Animals, Climate, Environment, Europe, Fungi growth & development, Geography, Humans, Invertebrates growth & development, Mammals growth & development, Models, Biological, Plant Development, Population Density, Population Dynamics, Regression Analysis, Biodiversity, Ecosystem, Human Activities
- Abstract
The accelerating rates of international trade, travel, and transport in the latter half of the twentieth century have led to the progressive mixing of biota from across the world and the number of species introduced to new regions continues to increase. The importance of biogeographic, climatic, economic, and demographic factors as drivers of this trend is increasingly being realized but as yet there is no consensus regarding their relative importance. Whereas little may be done to mitigate the effects of geography and climate on invasions, a wider range of options may exist to moderate the impacts of economic and demographic drivers. Here we use the most recent data available from Europe to partition between macroecological, economic, and demographic variables the variation in alien species richness of bryophytes, fungi, vascular plants, terrestrial insects, aquatic invertebrates, fish, amphibians, reptiles, birds, and mammals. Only national wealth and human population density were statistically significant predictors in the majority of models when analyzed jointly with climate, geography, and land cover. The economic and demographic variables reflect the intensity of human activities and integrate the effect of factors that directly determine the outcome of invasion such as propagule pressure, pathways of introduction, eutrophication, and the intensity of anthropogenic disturbance. The strong influence of economic and demographic variables on the levels of invasion by alien species demonstrates that future solutions to the problem of biological invasions at a national scale lie in mitigating the negative environmental consequences of human activities that generate wealth and by promoting more sustainable population growth.
- Published
- 2010
- Full Text
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23. Are plant pathogen populations adapted for encounter with their host? A case study of phenological synchrony between oak and an obligate fungal parasite along an altitudinal gradient.
- Author
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Desprez-Loustau ML, Vitasse Y, Delzon S, Capdevielle X, Marçais B, and Kremer A
- Subjects
- Altitude, Ascomycota genetics, Ascomycota growth & development, Plant Diseases microbiology, Quercus genetics, Quercus growth & development, Temperature, Time Factors, Adaptation, Physiological, Ascomycota physiology, Quercus microbiology
- Abstract
Biotrophic fungal pathogens are expected to have adapted to their host plants for phenological synchrony, to optimize the possibility of contacts leading to infections. We investigated the patterns and causes of variation in phenological synchrony in the oak-powdery mildew pathosystem, a major disease in natural ecosystems. The study was carried out along an altitudinal gradient, representing a wide temperature range, in mature oak stands. Both sporulation (pathogen infective stage) and oak flushing (host susceptible stage) were delayed with increasing elevation, but with a significantly different sensitivity for the two species. This resulted in a variable host-pathogen synchrony along the gradient. A common garden experiment did not give evidence of among-population genetic differentiation (past adaptation) for fungal phenology. This could be explained by the high phenotypic variation in phenology within host populations, precluding selection on fungal phenology at the population scale, but possibly favouring adaptation at the within-population scale. Phenotypic plasticity was the major cause of the observed variation in the phenology of the fungal populations.
- Published
- 2010
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24. Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history.
- Author
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Vacher C, Piou D, and Desprez-Loustau ML
- Subjects
- Gene Flow, Host-Parasite Interactions, Phylogeny, Evolution, Molecular, Fungi classification, Fungi genetics, Genetic Variation
- Abstract
Background: Compartmentalization and nestedness are common patterns in ecological networks. The aim of this study was to elucidate some of the processes shaping these patterns in a well resolved network of host/pathogen interactions., Methodology/principal Findings: Based on a long-term (1972-2005) survey of forest health at the regional scale (all French forests; 15 million ha), we uncovered an almost fully connected network of 51 tree taxa and 157 parasitic fungal species. Our analyses revealed that the compartmentalization of the network maps out the ancient evolutionary history of seed plants, but not the ancient evolutionary history of fungal species. The very early divergence of the major fungal phyla may account for this asymmetric influence of past evolutionary history. Unlike compartmentalization, nestedness did not reflect any consistent phylogenetic signal. Instead, it seemed to reflect the ecological features of the current species, such as the relative abundance of tree species and the life-history strategies of fungal pathogens. We discussed how the evolution of host range in fungal species may account for the observed nested patterns., Conclusion/significance: Overall, our analyses emphasized how the current complexity of ecological networks results from the diversification of the species and their interactions over evolutionary times. They confirmed that the current architecture of ecological networks is not only dependent on recent ecological processes.
- Published
- 2008
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25. The fungal dimension of biological invasions.
- Author
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Desprez-Loustau ML, Robin C, Buée M, Courtecuisse R, Garbaye J, Suffert F, Sache I, and Rizzo DM
- Subjects
- Biodiversity, Fungi, Introduced Species
- Abstract
Fungi represent an essential component of biodiversity, not only because of the large number of species, but also for their ecological, evolutionary and socio-economic significance. Yet, until recently, fungi received scant consideration in ecology, especially invasion ecology. Their under-representation is largely the result of a lack of scientific knowledge of fungal biodiversity and ecology. With the exception of pathogenic fungi, which cause emergent infectious diseases, the impact of fungal invasions is often difficult to quantify owing to limited baseline data on fungal communities. Here, we aim to raise awareness among mycologists and ecologists of the fungal dimension of invasions and of the need to intensify research in fungal ecology to address issues of future introductions.
- Published
- 2007
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26. Prediction and Mapping of the Impact of Winter Temperature on the Development of Phytophthora cinnamomi-Induced Cankers on Red and Pedunculate Oak in France.
- Author
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Marçais B, Bergot M, Pérarnaud V, Levy A, and Desprez-Loustau ML
- Abstract
ABSTRACT Phytophthora cinnamomi is the causal agent of a perennial canker that develops on the lower bole on northern red oak and pedunculate oak. The disease has a limited range in Europe, being reported only in southwest France. This limited distribution is probably linked to the susceptibility of P. cinnamomi to frost. A model was developed in previous work to estimate the impact of temperatures of <0 degrees C on the winter survival of P. cinnamomi in trunk cortical tissues and on the subsequent development of cankers. In this article, we report the use of this model to simulate canker development in 503 locations across France during a 30-year period. The predicted canker extension decreased sharply when the median P. cinnamomi winter survival index decreased from 0.95 to 0.65, with cankers that poorly developed when the median survival index was lower than 0.5 to 0.6. The actual incidence of the disease in 192 stands located across southwest France was compared with that of the model outputs. Both presence of disease in stands and frequency of cankered trees in infected stands, but not canker size on infected trees, were strongly related to the median P. cinnamomi survival index. No disease was present in stands with median survival index lower than 0.65, and the frequency of cankered trees in infected stands remained very low in stands with a median survival index between 0.65 and 0.70. Aspect was an additional factor explaining disease incidence, while the effect of elevation was likely due to its effect on winter temperatures. Maps of winter suitability to P. cinnamomi-induced cankers on oaks in France are presented.
- Published
- 2004
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27. Stomatal conductance and root-to-shoot signalling in chestnut saplings exposed to Phytophthora cinnamomi or partial soil drying.
- Author
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Maurel M, Robin C, Simonneau T, Loustau D, Dreyer E, and Desprez-Loustau ML
- Abstract
The effects of root infection by Phytophthora cinnamomi on stomatal conductance in Castanea sativa L. saplings were investigated to determine the potential role of root-derived chemical signals. A split-root experiment was carried out, in which inoculation of the pathogen or drought was applied to the root systems in either one or both compartments. At the end of the experiment plant sap extracts were collected and their effects on stomatal conductance were determined by leaf bioassay. Inoculation or drought imposed in both compartments resulted in decreases in stomatal conductance (g
s ), transpiration rate, soil-to-leaf specific hydraulic conductance, leaf water potential, xylem [ABA] and root biomass, but not in the ratio of root-to-leaf mass in inoculated plants. Conversely, only gs and xylem [ABA] were affected in plants inoculated or droughted in one compartment, and no changes were detectable in leaf water potential and soil-to-leaf specific hydraulic conductance. The leaf bioassay showed that gs in chestnut was sensitive to ABA but not to Phytophthora elicitins. Stomatal conductance was reduced by some sap extracts, both from control and inoculated plants. Our results suggest the involvement of different signals, chemical and hydraulic, in regulating stomatal conductance of chestnut at different stages of stress.- Published
- 2004
- Full Text
- View/download PDF
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