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2. Risk Factors for Acquiring Scrub Typhus among Children in Deoria and Gorakhpur Districts, Uttar Pradesh, India, 2017

Author

Thangaraj, Jeromie Wesley Vivian, Vasanthapuram, Ravi, Machado, Leonard, Arunkumar, Govindakarnavar, Sodha, Samir V., Zaman, Kamran, Bhatnagar, Tarun, Hameed, Shafeeq K. Shahul, Kumar, Arun, Abdulmajeed, Jazeel, Velayudhan, Anoop, Deoshatwar, Avinash, Desai, Anita S., Kumar, K. Hemanth, Gupta, Nivedita, Laserson, Kayla, and Murhekar, Manoj

Subjects
Uttar Pradesh, India -- Health aspects, Children -- Health aspects, Risk assessment -- Analysis, Scrub typhus -- Risk factors -- Research, Health
Abstract

Outbreaks of acute encephalitis syndrome (AES) with high case-fatality rates have been reported from Gorakhpur district, Uttar Pradesh, India, for >2 decades. These outbreaks occur during monsoon and postmonsoon seasons [...]

Published
2018
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3. An ultrastructural and genomic study on the SARS-CoV-2 variant B.1.210 circulating during the first wave of COVID-19 pandemic in India

Author

Kumar, Narendra, primary, Santhoshkumar, Rashmi, additional, Prasad, Pramada, additional, George, Anson K., additional, Aiyar, Jayashree, additional, Joshi, Saurabh, additional, Narayanappa, Gayathri, additional, Desai, Anita S., additional, Ravi, Vasanthapuram, additional, and Venkataswamy, Manjunatha M., additional

Published
2023
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4. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Author

Hill, Verity, O'Toole, Áine, Pybus, Oliver G, Watts, Alexander, Bogoch, Issac I, Khan, Kamran, Messina, Jane P, Tegally, Houriiyah, Lessells, Richard R, Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L, de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E, Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S, Vasanthapuram, Ravi, Schulz, Thomas F, Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S, Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Sikkema, Reina S, Oude Munnink, Bas, Koopmans, Marion, Eggink, Dirk, Reusken, Chantal, Hill, Verity, O'Toole, Áine, Pybus, Oliver G, Watts, Alexander, Bogoch, Issac I, Khan, Kamran, Messina, Jane P, Tegally, Houriiyah, Lessells, Richard R, Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L, de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E, Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S, Vasanthapuram, Ravi, Schulz, Thomas F, Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S, Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Sikkema, Reina S, Oude Munnink, Bas, Koopmans, Marion, Eggink, Dirk, and Reusken, Chantal

Abstract

Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.

Published
2021

5. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

Author

O'Toole, Áine, Kraemer, Moritz U.G., Hill, Verity, Pybus, Oliver G., Watts, Alexander, Bogoch, Issac I., Khan, Kamran, Messina, Jane P., Tegally, Houriiyah, Lessells, Richard R., Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L., de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E., Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S., Vasanthapuram, Ravi, Schulz, Thomas F., Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S., Mandelboim, Michal, Mor, Orna, Sikkema, Reina S., Oude Munnink, Bas, Koopmans, Marion, Eggink, Dirk, Reusken, Chantal, O'Toole, Áine, Kraemer, Moritz U.G., Hill, Verity, Pybus, Oliver G., Watts, Alexander, Bogoch, Issac I., Khan, Kamran, Messina, Jane P., Tegally, Houriiyah, Lessells, Richard R., Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L., de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E., Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S., Vasanthapuram, Ravi, Schulz, Thomas F., Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S., Mandelboim, Michal, Mor, Orna, Sikkema, Reina S., Oude Munnink, Bas, Koopmans, Marion, Eggink, Dirk, and Reusken, Chantal

Abstract

Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.

Published
2021

7. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.

Author

O'Toole Á, Hill V, Pybus OG, Watts A, Bogoch II, Khan K, Messina JP, Tegally H, Lessells RR, Giandhari J, Pillay S, Tumedi KA, Nyepetsi G, Kebabonye M, Matsheka M, Mine M, Tokajian S, Hassan H, Salloum T, Merhi G, Koweyes J, Geoghegan JL, de Ligt J, Ren X, Storey M, Freed NE, Pattabiraman C, Prasad P, Desai AS, Vasanthapuram R, Schulz TF, Steinbrück L, Stadler T, Parisi A, Bianco A, García de Viedma D, Buenestado-Serrano S, Borges V, Isidro J, Duarte S, Gomes JP, Zuckerman NS, Mandelboim M, Mor O, Seemann T, Arnott A, Draper J, Gall M, Rawlinson W, Deveson I, Schlebusch S, McMahon J, Leong L, Lim CK, Chironna M, Loconsole D, Bal A, Josset L, Holmes E, St George K, Lasek-Nesselquist E, Sikkema RS, Oude Munnink B, Koopmans M, Brytting M, Sudha Rani V, Pavani S, Smura T, Heim A, Kurkela S, Umair M, Salman M, Bartolini B, Rueca M, Drosten C, Wolff T, Silander O, Eggink D, Reusken C, Vennema H, Park A, Carrington C, Sahadeo N, Carr M, Gonzalez G, de Oliveira T, Faria N, Rambaut A, and Kraemer MUG

Abstract

Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected., Competing Interests: No competing interests were disclosed., (Copyright: © 2021 O'Toole Á et al.)

Published
2021
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