1. Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species
- Author
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A.-H. Li, K. Li, João Inácio, F.-X. Yuan, Qi-Ming Wang, José Paulo Sampaio, B. Fungsin, Benedetta Turchetti, M. C. Aime, Feng-Yan Bai, P.-J. Han, K. Bensch, L.-D. Guo, Marizeth Groenewald, Andrey Yurkov, Sasitorn Jindamorakot, UCIBIO - Applied Molecular Biosciences Unit, and DCV - Departamento de Ciências da Vida
- Subjects
Rhodosporidiobolus fuzhouensis Q.M. Wang, F.Y. Bai & A.H. Li ,Yamadamyces Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Kondoa lulangica Q.M. Wang, F.Y. Bai & A.H. Li ,Rhynchogastrema glucofermentans (S.O. Suh & M. Blackw.) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov ,Pseudohyphozyma lulangensis Q.M. Wang, F.Y. Bai & A.H. Li ,Papiliotrema japonica J.P. Samp., Fonseca & Fell ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Meniscomyces Q.M. Wang & F.Y. Bai ,Rosettozyma motuoensis Q.M. Wang, F.Y. Bai & A.H. Li ,Kockovaella nitrophila Q.M. Wang, F.Y. Bai & A.H. Li ,Robertozyma ningxiaensis Q.M. Wang, F.Y. Bai & A.H. Li ,Molecular phylogeny ,Dioszegia kandeliae Q.M. Wang, F.Y. Bai, L.D. Guo & A.H. Li ,Dioszegia maotaiensis Q.M. Wang, F.Y. Bai & A.H. Li ,Phaeotremella ovata Q.M. Wang, F.Y. Bai & A.H. Li ,Vishniacozyma foliicola Q.M. Wang & F.Y. Bai ex Yurkov ,Genolevuria pseudoamylolytica Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa ribitophobia Q.M. Wang, F.Y. Bai & A.H. Li ,Cytochrome b ,Oberwinklerozyma silvestris Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Ruinenia bangxiensis Q.M. Wang, F.Y. Bai & A.H. Li ,Glaciozyma antarctica (Fell, Statzell, I.L. Hunter & Phaff) M. Groenew. & Q.M. Wang ,Papiliotrema aspenensis (Ferreira-Paim, et al.) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Teunia Q.M. Wang & F.Y. Bai ,Symmetrospora oryzicola (Nakase & M. Suzuki) Q.M. Wang & F.Y. Bai ,Glaciozyma Turchetti, Connell, Thomas-Hall & Boekhout ex M. Groenew. & Q.M. Wang ,Bulleribasidium siamense Fungsin, M. Takash. & Nakase ex Q.M. Wang, F.Y. Bai, Boekhout & Nakase ,Microsporomyces pseudomagnisporus Q.M. Wang, F.Y. Bai & A.H. Li ,Rosettozymaceae Q.M. Wang & F.Y. Bai ,Derxomyces nakasei F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang ,Naganishia onofrii Turchetti, Selbmann & Zucconi ex Yurkov ,Filobasidium mali Q.M. Wang, F.Y. Bai & A.H. Li ,Boekhoutia sterigmata Q.M. Wang, F.Y. Bai & A.H. Li ,Pseudohyphozyma hydrangeae Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces taiwanicus Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa chamaenerii Q.M. Wang, F.Y. Bai & A.H. Li ,Bulleribasidium elongatum Q.M. Wang, F.Y. Bai & A.H. Li ,Oberwinklerozyma straminea Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Sporobolomyces primogenomicus Q.M. Wang & F.Y. Bai ,03 medical and health sciences ,Bulleribasidium phyllophilum Q.M. Wang, F.Y. Bai & A.H. Li ,Agaricomycotina ,Leucosporidium yakuticum (Golubev) M. Groenew. & Q.M. Wang ,Robertozyma Q.M. Wang & F.Y. Bai ,Chrysozyma flava Q.M. Wang, F.Y. Bai & A.H. Li ,Internal transcribed spacer ,Oberwinklerozyma dicranopteridis Q.M. Wang, F.Y. Bai & A.H. Li ,Begerowomyces foliicola Q.M. Wang, F.Y. Bai & A.H. Li ,030306 microbiology ,Heitmania cylindrica Q.M. Wang, F.Y. Bai & A.H. Li ,Nielozyma formosana Nakase, Tsuzuki, F.L. Lee & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Piskurozyma fildesensis T.T. Zhang & Li Y. Yu ex Yurkov ,Tremella shuangheensis Q.M. Wang, F.Y. Bai & A.H. Li ,Cystobasidium terricola Q.M. Wang, F.Y. Bai & A.H. Li ,Bulleribasidium panici Fungsin, M. Takash. & Nakase ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Chrysozyma pseudogriseoflava Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces elongatus Q.M. Wang, F.Y. Bai & A.H. Li ,Yamadamyces terricola Q.M. Wang, F.Y. Bai & A.H. Li ,Filobasidium dingjieense Q.M. Wang, F.Y. Bai & A.H. Li ,Meniscomyces layueensis Q.M. Wang, F.Y. Bai & A.H. Li ,Pucciniomycotina ,Derxomyces napiformis Q.M. Wang, F.Y. Bai & A.H. Li ,Bannozyma arctica Vishniac & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Rhodosporidiobolus platycladi Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces ovatus Q.M. Wang, F.Y. Bai & A.H. Li ,biology ,Kondoa thailandica Fungsin, Hamam. & Nakase ex Q.M. Wang, M. Groenew., F.Y. Bai & Boekhout ,Pseudotremella lacticolour Satoh & Makimura ex Yurkov ,Teunia cuniculi (K.S. Shin & Y.H. Park) Q.M. Wang, F.Y. Bai & A.H. Li ,Vishniacozyma heimaeyensis Vishniac ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Carcinomyces arundinariae Fungsin, M. Takash. & Nakase ex Yurkov ,Rhynchogastrema complexa (Landell, et al.) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov ,Teunia korlaensis Q.M. Wang, F.Y. Bai & A.H. Li ,Phaeotremella lactea Q.M. Wang, F.Y. Bai & A.H. Li ,Chrysozyma sorbariae Q.M. Wang, F.Y. Bai & A.H. Li ,Slooffia globosa Q.M. Wang, F.Y. Bai & A.H. Li ,Ruinenia pyrrosiae Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Chrysozyma cylindrica Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa myxariophila Q.M. Wang, F.Y. Bai & A.H. Li ,F.Y. Bai, M. Groenew. & Boekhout ,Chrysozyma sambuci Q.M. Wang, F.Y. Bai & A.H. Li ,Solicoccozyma gelidoterrea Q.M. Wang, F.Y. Bai & A.H. Li ,Chrysozyma rhododendri Q.M. Wang, F.Y. Bai & A.H. Li ,Rosettozyma petaloides Q.M. Wang, F.Y. Bai & A.H. Li ,Kockovaella ischaemi Q.M. Wang, F.Y. Bai & A.H. Li ,Microsporomyces ellipsoideus Q.M. Wang, F.Y. Bai & A.H. Li ,Vishniacozyma pseudopenaeus Q.M. Wang, F.Y. Bai & A.H. Li ,Yurkovia longicylindrica Q.M. Wang, F.Y. Bai & A.H. Li ,Ruinenia lunata Q.M. Wang, F.Y. Bai & A.H. Li ,biology.organism_classification ,Bulleribasidium cremeum Q.M. Wang, F.Y. Bai & A.H. Li ,Kockovaella mexicana Lopandić, O. Molnár & Prillinger ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Bensingtonia pseudorectispora Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces xingshanicus Q.M. Wang, F.Y. Bai & A.H. Li ,Sterigmatospora layueensis Q.M. Wang, F.Y. Bai & A.H. Li ,Jianyuniaceae Q.M. Wang & F.Y. Bai ,Phyllozyma aceris Q.M. Wang, F.Y. Bai & A.H. Li ,Saitozyma pseudoflava Q.M. Wang, F.Y. Bai & A.H. Li ,Apiotrichum xylopini S.O. Suh, C.F. Lee, Gujjari & J.J. Zhou ex Kachalkin, Yurkov & Boekhout ,Pseudobensingtonia fusiformis Q.M. Wang, F.Y. Bai & A.H. Li ,Leucosporidium muscorum (Di Menna) M. Groenew. & Q.M. Wang ,Phyllozyma jiayinensis Q.M. Wang, F.Y. Bai & A.H. Li ,Pseudosterigmatospora motuoensis Q.M. Wang, F.Y. Bai & A.H. Li ,Saitozyma paraflava Golubev & J.P. Samp. ex Xin Zhan Liu ,Papiliotrema hoabinhensis D.T. Luong, M. Takash., Ty, Dung & Nakase ex Yurkov ,Saitozyma ninhbinhensis (D.T. Luong, M. Takash., Dung & Nakase)Yurkov ,lcsh:QH301-705.5 ,Species diversity ,Basidiomycetous yeasts ,0303 health sciences ,Kwoniella ovata Q.M. Wang, F.Y. Bai & A.H. Li ,Glaciozyma martinii Turchetti, Connell, Thomas-Hall & Boekhout ,Sakaguchia melibiophila M. Groenew., Q.M. Wang & F.Y. Bai ,Derxomyces longiovatus Q.M. Wang, F.Y. Bai & A.H. Li ,Papiliotrema terrestris Crestani, Landell, Faganello, Vainstein, Vishniac & P. Valente ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Leucosporidium intermedium (Nakase & M. Suzuki) M. Groenew. & Q.M. Wang ,Tremella basidiomaticola Xin Zhan Liu & F.Y. Bai ,Symmetrospora rhododendri Q.M. Wang, F.Y. Bai & A.H. Li ,Bulleribasidium pseudopanici Q.M. Wang, F.Y. Bai & A.H. Li ,Rhynchogastrema visegradensis (G. Péter & Dlauchy) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout &Yurkov ,Genolevuria bromeliarum Landell & P. Valente ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Cystobasidium alpinum Turchetti, Selbmann, Onofri & Buzzini ,Rhynchogastrema tunnelae (Boekhout, Fell, Scorzetti & Theelen) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov ,Vishniacozyma psychrotolerans V. de García, Zalar, Brizzio, Gunde-Cim. & Van Broock ex Yurkov ,Derxomyces bifurcus Q.M. Wang, F.Y. Bai & A.H. Li ,Yamadamyces rosulatus Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Vishniacozyma tephrensis Vishniac ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Ruinenia diospyri Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Pseudoleucosporidium fasciculatum (Babeva & Lisichk.) M. Groenew. & Q.M. Wang ,Heitmaniaceae Q.M. Wang & F.Y. Bai ,Cystobasidium portillonense Laich, Vaca & R. Chávez ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout ,Papiliotrema frias V. de García, Zalar, Brizzio, Gunde-Cim. & Van Broock ex Yurkov ,Holtermannia saccardoi Q.M. Wang, F.Y. Bai & A.H. Li ,Phylogenetics ,Carlosrosaea foliicola Q.M. Wang, F.Y. Bai & A.H. Li ,Sporobolomyces cellobiolyticus Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa daliangziensis Q.M. Wang, F.Y. Bai & A.H. Li ,Chrysozyma iridis Q.M. Wang, F.Y. Bai & A.H. Li ,Leucosporidium fragarium (J.A. Barnett & Buhagiar) M. Groenew. & Q.M. Wang ,Pseudosterigmatospora Q.M. Wang & F.Y. Bai ,Vanrija thermophila Vogelmann, S. Chaves & C. Hertel ex Kachalkin Yurkov & Boekhout ,Papiliotrema wisconsinensis K. Sylvester, Q.M. Wang & Hittinger ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Begerowomyces Q.M. Wang & F.Y. Bai ,Dioszegia zsoltii F.Y. Bai, M. Takash. & Nakase ,Papiliotrema baii Yurkov, M.A. Guerreiro & Á ,Fonseca ex Yurkov ,Oberwinklerozyma nepetae Q.M. Wang, F.Y. Bai & A.H. Li ,Rhynchogastrema fermentans (C.F. Lee) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov ,Derxomyces pseudoyunnanensis Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa foliicola Q.M. Wang, F.Y. Bai & A.H. Li ,Evolutionary biology ,Nielozyma Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Phaffia aurantiaca Q.M. Wang, F.Y. Bai & A.H. Li ,Vanrija nantouana C.F. Lee ex Kachalkin Yurkov & Boekhout ,Colacogloea subericola (Belloch, Villa-Carv., Á ,lv.-Rodríg. & Coque) Q.M. Wang, & F.Y. Bai ,Sporobolomyces reniformis Q.M. Wang, F.Y. Bai & A.H. Li ,030308 mycology & parasitology ,Chrysozyma fusiformis Q.M. Wang, F.Y. Bai & A.H. Li ,Leucosporidium creatinivorum (Golubev) M. Groenew. & Q.M. Wang ,Dioszegia heilongjiangensis Q.M. Wang, F.Y. Bai & A.H. Li ,Rosettozyma cystopteridis Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa cylindrica Q.M. Wang, F.Y. Bai & A.H. Li ,Teunia globosa Q.M. Wang, F.Y. Bai & A.H. Li ,Rosettozymales Q.M. Wang & F.Y. Bai ,Glaciozyma watsonii Turchetti, Connell, Thomas-Hall & Boekhout ,Dioszegia ovata Q.M. Wang, F.Y. Bai & A.H. Li ,Phylogenetic tree ,Carlosrosaea simaoensis Q.M. Wang, F.Y. Bai & A.H. Li ,Rosettozyma Q.M. Wang & F.Y. Bai ,Heitmaniales Q.M. Wang & F.Y. Bai ,Bulleribasidium phyllostachydis Q.M. Wang, F.Y. Bai & A.H. Li ,Teunia betulae K. Sylvester, Q.M. Wang & Hittinger ex Q.M. Wang, F.Y. Bai & A.H. Li ,Rhynchogastrema nanyangensis F.L. Hui & Q.H. Niu ex Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov ,Agricultural and Biological Sciences (miscellaneous) ,Boekhoutia Q.M. Wang & F.Y. Bai ,Rhodosporidiobolus jianfalingensis Q.M. Wang, F.Y. Bai & A.H. Li ,Filobasidium globosum Q.M. Wang, F.Y. Bai & A.H. Li ,Vishniacozyma melezitolytica Q.M. Wang, F.Y. Bai & A.H. Li ,Cystobasidium raffinophilum Q.M. Wang, F.Y. Bai & A.H. Li ,Kondoa arboricola Q.M. Wang, F.Y. Bai & A.H. Li ,Sporobolomyces ellipsoideus Q.M. Wang, F.Y. Bai & A.H. Li ,Research Paper ,Derxomyces cylindricus F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang ,Kondoa rhododendri Q.M. Wang, F.Y. Bai & A.H. Li ,Microsporomyces rubellus Q.M. Wang, F.Y. Bai & A.H. Li ,Sterigmatospora Q.M. Wang & F.Y. Bai ,Naganishia vaughanmartiniae Turchetti, Blanchette & Arenz ex Yurkov ,Colacogloea hydrangeae Q.M. Wang, F.Y. Bai & A.H. Li ,Vishniacozyma taibaiensis Q.M. Wang & F.Y. Bai ex Yurkov ,Vanrija meifongana C.F. Lee ex Kachalkin Yurkov & Boekhout ,Pseudoleucosporidium V. de García, et al. ex M. Groenew. & Q.M. Wang ,Ribosomal DNA ,Vishniacozyma europaea Q.M. Wang, F.Y. Bai & A.H. Li ,Taxonomy ,Derxomyces pseudoboekhoutii Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces longicylindricus Q.M. Wang, F.Y. Bai & A.H. Li ,Ruinenia fanjingshanensis Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces hubeiensis F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang ,Trimorphomyces sakaeraticus Fungsin, M. Takash. & Nakase ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Dioszegia milinica Q.M. Wang, F.Y. Bai & A.H. Li ,Bensingtonia wuzhishanensis Q.M. Wang, F.Y. Bai & A.H. Li ,Derxomyces polymorphus Q.M. Wang, F.Y. Bai & A.H. Li ,Kwoniella shandongensis R. Chen, Y.M. Jiang & S.C. Wei ex M. Groenew. & Q.M. Wang ,Colacogloea aletridis Q.M. Wang, F.Y. Bai & A.H. Li ,Kockovaella haikouensis Q.M. Wang, F.Y. Bai & A.H. Li ,Kwoniella newhampshirensis K. Sylvester, Q.M. Wang & C.T. Hittinger ,Nielozyma melastomatis Nakase, Tsuzuki, F.L. Lee & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout ,Colacogloea rhododendri Q.M. Wang, F.Y. Bai & A.H. Li ,Microbotryozyma swertiae Q.M. Wang, F.Y. Bai & A.H. Li ,Teunia tronadorensis V. de Garcia, Zalar, Brizzio, Gunde-Cim. & van Brook ex Q.M. Wang, F.Y. Bai & A.H. Li ,lcsh:Biology (General) ,Derxomyces melastomatis Q.M. Wang, F.Y. Bai & A.H. Li ,Filobasidium mucilaginum Q.M. Wang, F.Y. Bai & A.H. Li ,Tremellomycetes ,Heitmania tridentata Q.M. Wang, F.Y. Bai & A.H. Li ,Teunia helanensis Q.M. Wang, F.Y. Bai & A.H. Li ,Piskurozyma taiwanensis Nakase, Tsuzuki & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout - Abstract
Funding Information: We thank Prof. Jian-Yun Zhuang for his advice on nomenclatural matters. We thank Dr. Alexander Idnurm for his kindly providing the sequences and informations of strain IAM13481 and his critical comments for this manuscript, Dr. Aleksey Kachalkin for his sharing the physilogical data of strain KBP Y-5548 and Masako Takashima for her sharing the physilogical data of strain TY-217. We also thank Ana Pontes and Cl?udia Carvalho for editing illustrations of Kondoa myxariophila and for ITS sequencing, respectively. This study was supported by grants No. 31570016 from the National Natural Science Foundation of China (NSFC) and national project on scientific groundwork No. 2014FY210400 from the Ministry of Science and Technology of China. The authors are solely responsible for the content of this work. Nearly 500 basidiomycetous yeast species were accepted in the latest edition of The Yeasts: A Taxonomic Study published in 2011. However, this number presents only the tip of the iceberg of yeast species diversity in nature. Possibly more than 99 % of yeast species, as is true for many groups of fungi, are yet unknown and await discovery. Over the past two decades nearly 200 unidentified isolates were obtained during a series of environmental surveys of yeasts in phyllosphere and soils, mainly from China. Among these isolates, 107 new species were identified based on the phylogenetic analyses of nuclear ribosomal DNA (rDNA) [D1/D2 domains of the large subunit (LSU), the small subunit (SSU), and the internal transcribed spacer region including the 5.8S rDNA (ITS)] and protein-coding genes [both subunits of DNA polymerase II (RPB1 and RPB2), the translation elongation factor 1-α (TEF1) and the mitochondrial gene cytochrome b (CYTB)], and physiological comparisons. Forty-six of these belong to 16 genera in the Tremellomycetes (Agaricomycotina). The other 61 are distributed in 26 genera in the Pucciniomycotina. Here we circumscribe eight new genera, three new families and two new orders based on the multi-locus phylogenetic analyses combined with the clustering optimisation analysis and the predicted similarity thresholds for yeasts and filamentous fungal delimitation at genus and higher ranks. Additionally, as a result of these analyses, three new combinations are proposed and 66 taxa are validated. publishersversion published
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- 2020
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