70 results on '"Dertli, E."'
Search Results
2. Isolation and identification of an exopolysaccharide producer streptococcus thermophilus strain from turkish yogurt
- Author
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DERTLİ E
- Subjects
Veterinary medicine ,SF600-1100 - Published
- 2015
- Full Text
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3. Investigation of probiotic potential of yeasts isolated from sourdoughs from different regions of Turkey
- Author
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Alkay, Z., primary, Dertli, E., additional, and Durak, M.Z., additional
- Published
- 2021
- Full Text
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4. produced by Lactobacillus plantarum strains isolated from Tarhana
- Author
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Senturk, DZ, Dertli, E, Erten, H, and Simsek, O
- Subjects
Rheology ,Lactobacillus plantarum ,Exopolysaccharide ,Ropiness ,Structure - Abstract
Exopolysaccharide producing starter cultures enable manufacturing "clean labeled" foods with improved textural and nutritional properties. The structural and technological analyses were performed on the ropy exopolysaccharides of six Lactobacillus plantarum. The incubation temperature, time and pH affected the exopolysaccharide production and high exopolysaccharide was produced in the presence of sucrose and maltose. The viscosity of exopolysaccharide was high at acidic conditions except PFC311E that showed viscous at neutral pH. Lactobacillus plantarum strains produced between 120 and 400 mg/L exopolysaccharide in which the highest was observed at L. plantarum PFC311. Exoploysaccharides were degraded over 300 degrees C except PFC311E that degraded at 295.7 degrees C. The NMR analyses revealed that the exopolysaccharides were synthesized by alpha 1-6, alpha 1-3 and alpha 1-4 bonds with glucose, galactose and fructose moieties. In conclusion, L. plantarum PFC311 produced ropy exopolysaccharide with different structural, rheological and thermal properties and reveals potential to be used in food industry. C1 [Zehir Senturk, Duygu; Simsek, Omer] Univ Pamukkale, Dept Food Engn, TR-20160 Denizli, Turkey. [Dertli, Enes] Univ Bayburt, Dept Food Engn, TR-69000 Bayburt, Turkey. [Erten, Huseyin] Univ Cukurova, Dept Food Engn, TR-01330 Adana, Turkey.
- Published
- 2020
5. Effects of Lactobacillus Reuteri E81 Added into Rations of Chukar Partridges (Alectoris Chukar) Fed Under Heat Stress Conditions on Fattening Performance and Meat Quality
- Author
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Tekce, E, primary, Bayraktar, B, additional, Aksakal, V, additional, Dertli, E, additional, Kamiloğlu, A, additional, Çinar, K, additional, Takma, Ç, additional, Kaya, H, additional, and Gül, M, additional
- Published
- 2020
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6. Characterization of a 4,6-alpha-glucanotransferase from Lactobacillus
- Author
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Ispirli, H, Simsek, O, Skory, C, Sagdic, O, and Dertli, E
- Subjects
functions ,4,6-alpha-Glucanotransferase ,Malto-oligosaccharides ,Immune-modulatory - Abstract
A wide number of Lactic Acid Bacteria (LAB) species produce alpha-glucans with their ability to synthesize glucansucrases (GS) which use sucrose as substrate for the glucan production. Recently another group of enzymes in LAB gained special interest for their ability to produce alpha-glucans targeting the substrates containing alpha 1-4-linkages and synthesizing new (alpha 1-6) or (alpha 1-3)-linkages as alpha-glucanotransferases. In this study, a putative 4,6-a-glucanotransferase (GTFB) from sourdough isolate Lactobacillus reuteri E81 was identified and expressed in Escherichia coli. The biochemical characterization of the GTFB-E81 confirmed its function as it cleaved the alpha 1-4-linkages in different substrates and produced new gluco-oligomers/polymers containing al 6 linkages together with the alpha 1-4-linkages detected by NMR analysis. GTFB-E81 produced maltooligosaccharides targeting maltose and maltoheptaose as substrates with up to DP 8 detected by TLC and ESIMS/MS analysis. The functional roles of these malto-oligosaccharides were determined by testing their immune-modulatory functions in HT29 cells and they triggered the production of anti-inflammatory 1L-4 and pro-inflammatory IL-12 cytokines. (C) 2018 Elsevier B.V. All rights reserved. C1 [Ispirli, Humeyra; Sagdic, Osman] Yildiz Tech Univ, Chem & Met Engn Fac, Dept Food Engn, TR-34000 Istanbul, Turkey. [Simsek, Omer] Pamukkale Univ, Dept Food Engn, Fac Engn, TR-20000 Denizli, Turkey. [Skory, Christopher] ARS, Renewable Prod Technol Res Unit, Natl Ctr Agr Utilizat Res, USDA, 1815 North Univ St, Peoria, IL 61604 USA. [Dertli, Enes] Bayburt Univ, Dept Food Engn, Fac Engn, TR-69000 Bayburt, Turkey.
- Published
- 2019
7. Genome Sequences of Five Lactobacillus sp. Isolates from Traditional
- Author
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Dertli, E, Skory, CD, and Simsek, O
- Subjects
bacteria ,food and beverages - Abstract
A high level of variation in microflora can be observed in profiles of lactic acid bacteria (LAB) from sourdoughs. Here, we present draft genome sequences of Lactobacillus reuteri E81, L. reuteri LR5A, L. rhamnosus LR2, L. plantarum PFC-311, and the novel Lactobacillus sp. strain PFC-70, isolated from traditional Turkish backslopped wheat sourdoughs.
- Published
- 2018
8. Influence of Lactobacillus reuteri on internal organ weight, performance and meat quality of Japanese quail (Coturnix coturnix japonica) under heat stress.
- Author
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Tekce, E., Bayraktar, B., Aksakal, V., Dertli, E., Kamiloğlu, A., Topçu, K. Çinar, Kaya, H., Takma, C., and Yasulergezer, N.
- Subjects
JAPANESE quail ,LACTOBACILLUS reuteri ,MEAT quality ,TEMPERATURE control ,MEAT analysis ,EXERCISE ,HEAT - Abstract
Copyright of European Poultry Science / Archiv für Geflügelkunde is the property of Verlag Eugen Ulmer and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2020
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9. Isolation and identification of an exopolysaccharide producer Streptococcus thermophilus strain from Turkish yogurt [Yoğurttan ekzopolisakkarit üreten Streptococcus thermophilus suşunun izolasyonu ve tanımlanması]
- Author
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Dertli E. and Bayburt University
- Subjects
Exopolysaccharides ,FTIR ,food and beverages ,Streptococcus thermophilus ,16S rRNA ,Yogurt ,Bacteria (microorganisms) - Abstract
Production of exopolysaccharides (EPS) by starter Lactic acid bacteria (LAB) gained special interest due to technological role of these natural polymers. Yogurt samples were collected from different households in Turkey and bacterial strains were isolated and evaluated for EPS production. Strains potentially producing EPS were then identified to species level with 16S rRNA sequencing. An EPS producer Streptecoccus thermophilus strain was identified from yogurt samples. EPS was extracted from culture supernatants of S. thermophilus and partially purified and structural analysis of the crude EPS by FTIR spectroscopy revealed the presence of typical functional groups related to exopolysaccharides. This study explains the identification of a potential starter culture for yogurt production with EPS production. © 2015, KAFKAS UNIVERSITY. All rights reserved.
- Published
- 2015
10. Decontamination of Escherichia coliO157: H7 and Staphylococcus aureus from Fresh-Cut Parsley with Natural Plant Hydrosols
- Author
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Törnük F., Dertli E., and Bayburt University
- Subjects
Staphylococcus aureus ,Inhibitory effect ,Bacteria ,Food-borne pathogens ,Pathogen inoculation ,Inoculum level ,Tap water ,Low concentrations ,Pathogens ,Decontamination ,Natural plants - Abstract
The inhibitory effects of sage, rosemary, oregano and thyme hydrosols were evaluated against Escherichia coliO157:H7 and Staphylococcus aureus inoculated on parsley at high and low concentrations. Following the pathogen inoculations, parsley samples were washed with the hydrosols and sterile tap water as a control for 0, 20, 40 and 60min, and reductions on pathogen counts were determined. Sterile tap water was ineffective on all conditions tested. After 20min of application, oregano and thyme hydrosols were able to significantly (P
- Published
- 2015
11. X ve Y Kuşağı Yöneticilerinin İş Değerleri Algısı ve Farklılıkları Üzerine İnceleme
- Author
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Şenturan, Şermin, primary, Köse, Aslıhan, additional, Dertli, E. Mine, additional, and Başak, Satenik, additional
- Published
- 2016
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12. In vitro fecal microbiota modulation properties of pectin and xyloglucan from hazelnut (Corylus avellana L.) skin, an industrial byproduct, and their incorporation into biscuit formula.
- Author
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Alkay Z, Gonzales MAA, Esen E, Sarıoğlan İ, Arioglu-Tuncil S, Dertli E, Lindemann SR, and Tunçil YE
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- Humans, Fermentation, RNA, Ribosomal, 16S genetics, Pectins pharmacology, Pectins chemistry, Xylans pharmacology, Xylans metabolism, Xylans chemistry, Corylus chemistry, Glucans pharmacology, Glucans chemistry, Feces microbiology, Gastrointestinal Microbiome drug effects, Dietary Fiber metabolism, Dietary Fiber pharmacology
- Abstract
The aim of this study was to extract water-soluble dietary fibers (WSDF
skin ), pectin (PECskin ), and xyloglucan (XGskin ) from hazelnut skin and to determine their impacts on colonic microbiota and metabolic function. WSDFskin , PECskin , and XGskin were extracted by water, acid, and alkali treatments, respectively. Monosaccharide analysis revealed WSDFskin and PECskin were dominated by uronic acids, while the XGskin was found to contain xyloglucan- and pectin-associated sugars. In vitro fecal fermentation analysis showed that WSDFskin , PECskin , and XGskin are fermented to different microbial short-chain fatty acid profiles by identical microbiota. 16S rRNA sequencing demonstrated that PECskin promoted Faecalibacterium prausnitzii and Lachnospiraceae related operational taxonomic units (OTUs), which are recognized as beneficial members of the human gut, whereas WSDFskin and XGskin stimulated Bacteroides OTUs. Interestingly, increased abundances of F. prausnitzii and Lachnospiraceae OTUs in PECskin were higher than those in commercially available pectin. Finally, PECskin and XGskin were tested in a biscuit model and the results showed that either PECskin or XGskin can be incorporated into biscuit formulations without impacting physical, textural, and sensory properties of the final product. Overall, our results demonstrated that hazelnut skin, an industrial byproduct, can be utilized for the production of functional dietary fibers, especially pectin, to improve colonic health., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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13. Characterization and technological functions of different lactic acid bacteria from traditionally produced Kırklareli white brined cheese during the ripening period.
- Author
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Çetin B, Usal M, Aloğlu HŞ, Busch A, Dertli E, and Abdulmawjood A
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- Fermentation, Anti-Bacterial Agents pharmacology, Cheese microbiology, Lactobacillales isolation & purification, Lactobacillales classification, Lactobacillales metabolism, Lactobacillales growth & development, Lactobacillales genetics, Lactobacillales physiology, Food Microbiology
- Abstract
In the present study, the evolution of the physicochemical and microbiological characteristics of lactic acid bacteria (LAB) in traditional Kırklareli white brined cheese collected from 14 different cheese manufacturing facilities were investigated on different days of the 90-day ripening period. The obtained LAB within the species Lactococcus (Lc.) lactis, Latilactobacillus (Lt.) curvatus, Lactobacillus (Lb.) casei and Lb. plantarum, Enterococcus (E.) durans, E. faecium, E. faecalis, Streptococcus macedonicus, and Weissella paramesenteroides were characterized in terms of their influence on technological properties and their potential as starter cultures for traditional white brined cheese production. The results of the microbiological and physicochemical investigations showed that a few selected isolates of Lc. lactis, Lb. casei, and Lb. plantarum had certain functions as starter germs. Moderate acidification capacity, antibacterial activity and proteolytic activity, which are characteristic of their use as starter lactic acid bacteria, were found. Importantly, antibiotic resistance among selected Lc. lactis, Lb. casei, and Lb. plantarum isolates was extremely low, whereas some of these isolates demonstrated antibacterial activity against major foodborne pathogenic bacteria. Based on the results obtained in this study, selected Lc. and Lb. isolates can also be considered as starter culture in traditional cheese production., (© 2024. The Author(s).)
- Published
- 2024
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14. Optimization of cryoprotectant formulation to enhance the viability of Lactiplantibacillus plantarum NBC99 isolated from human origin.
- Author
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Kavak AE, Zent İ, Özdemir A, and Dertli E
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- Humans, Sucrose pharmacology, Sucrose chemistry, Polysaccharides pharmacology, Polysaccharides chemistry, Microbial Viability drug effects, Milk microbiology, Milk chemistry, Animals, Cryoprotective Agents pharmacology, Cryoprotective Agents chemistry, Freeze Drying, Probiotics, Lactobacillus plantarum drug effects, Lactobacillus plantarum growth & development
- Abstract
Freeze drying has been well applied in the preparation of high-efficiency viability probiotic powders. However, the process is generally accompanied by probiotic viability deficiency, which poses a problem for further application. In this study, various kinds of cryoprotectant formulations (skim milk, maltodextrin, and sucrose) were tested to enhance the survival of Lactiplantibacillus plantarum NBC99 after freezing and freeze-drying. An I-optimal experimental design-oriented optimization model was presented to optimize the cryoprotective medium, and the highest cell survival was observed with 25% skim milk, 8.71% maltodextrin, and 1.13% sucrose cryoprotectant as the optimum condition. L. plantarum NBC99 has been a good potential strain for the manufacture of an industrial probiotic, and this research has aimed to investigate the long-term protective effects of optimum cryoprotectant formulations on the viability of bacteria. The results showed the potential value of freeze-dried probiotic L. plantarum NBC99 culture for commercialization.
- Published
- 2024
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15. Investigating the Effect of Melittin Peptide in Preventing Biofilm Formation, Adhesion and Expression of Virulence Genes in Listeria monocytogenes.
- Author
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Rouhi A, Falah F, Azghandi M, Alizadeh Behbahani B, Tabatabaei-Yazdi F, Ibrahim SA, Dertli E, and Vasiee A
- Abstract
Listeria monocytogenes is a notable food-borne pathogen that has the ability to create biofilms on different food processing surfaces, making it more resilient to disinfectants and posing a greater risk to human health. This study assessed melittin peptide's anti-biofilm and anti-pathogenicity effects on L. monocytogenes ATCC 19115. Melittin showed minimum inhibitory concenteration (MIC) of 100 μg/mL against this strain and scanning electron microscopy images confirmed its antimicrobial efficacy. The OD measurement demonstrated that melittin exhibited a strong proficiency in inhibiting biofilms and disrupting pre-formed biofilms at concentrations ranging from 1/8MIC to 2MIC and this amount was 92.59 ± 1.01% to 7.17 ± 0.31% and 100% to 11.50 ± 0.53%, respectively. Peptide also reduced hydrophobicity and self-aggregation of L. monocytogenes by 35.25% and 14.38% at MIC. Melittin also significantly reduced adhesion to HT-29 and Caco-2 cells by 61.33% and 59%, and inhibited invasion of HT-29 and Caco-2 cells by 49.33% and 40.66% for L. monocytogenes at the MIC value. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) revealed melittin's impact on gene expression, notably decreasing inlB (44%) and agrA (45%) gene expression in L. monocytogenes. flaA and hly genes also exhibited reduced expression. Also, significant changes were observed in sigB and prfA gene expression. These results underscore melittin's potential in combating bacterial infections and biofilm-related challenges in the food industry., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2024
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16. Harnessing the Role of Three Lactic Acid Bacteria (LAB) Strains for Type II Sourdough Production and Influence of Sourdoughs on Bread Quality and Maillard Reaction Products.
- Author
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Sahin M, Ozgolet M, Cankurt H, and Dertli E
- Abstract
This study tested the effect of Companilactobacillus paralimentarius E-106, Lactiplantibacillus paraplantarum N-15 and Lactiplantibacillus plantarum SC-9 on the amount of Maillard reaction and aroma profile in bread making with main bread quality parameters. The specific volumes of sourdough and control breads were in the range of 2.97-3.04 cm
3 /g, and the control II bread had the highest hardness values on all days. The FAST index value was determined to be between 40.48% and 81.22% in all breads. The FAST index value was found to be higher in the control breads than in the sourdough breads. In the volatile compounds analysis, 72 volatile compounds were detected. The variety of volatile compounds in the breads with sourdough addition was higher than the control breads. Among the tested strains, Companilactobacillus paralimentarius E-106 demonstrated superior properties for bread characteristics in comparison to other strains as a type II sourdough starter. In summary, improved aroma profile and decreased Maillard reaction products can be provided by sourdough addition without changing the bread quality, along with meeting consumer demand for less additive use.- Published
- 2024
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17. Exploring the Nutritional Impact of Sourdough Fermentation: Its Mechanisms and Functional Potential.
- Author
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Alkay Z, Falah F, Cankurt H, and Dertli E
- Abstract
Sourdough fermentation is one of the oldest traditional methods in food technology and occurs as a result of fermentation of flour prepared from grains. The nutritional role of sourdough is related to the final composition of fermented foods prepared through sourdough fermentation, and recently, sourdough has become an important application to improve nutrition characteristics of bread. Thanks to lactic acid bacteria (LAB) presented in sourdough microflora and metabolites partially produced by yeasts, technological and important nutritional features of the bread improve and an increase in shelf life is achieved. In addition, sourdough bread has a low glycemic index value, high protein digestibility, high mineral and antioxidant content, and improved dietary fiber composition, making it more attractive for human nutrition compared to regular bread. When the sourdough process is applied, the chemical and physical properties of fibers vary according to the degree of fermentation, revealing the physiological importance of dietary fiber and its importance to humans' large intestine microbiota. Therefore, taking these approach frameworks into consideration, this review highlights the benefits of sourdough fermentation in increasing nutrient availability and contributing positively to support human health.
- Published
- 2024
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18. Physicochemical and structural characterisation of a branched dextran type exopolysaccharide (EPS) from Weissella confusa S6 isolated from fermented sausage (Sucuk).
- Author
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Özpınar FB, İspirli H, Kayacan S, Korkmaz K, Dere S, Sagdic O, Alkay Z, Tunçil YE, Ayyash M, and Dertli E
- Subjects
- Dextrans chemistry, Glucose metabolism, Magnetic Resonance Spectroscopy, Weissella metabolism, Lactobacillales
- Abstract
Exopolysaccharide (EPS) producing Lactic Acid Bacteria (LAB) species can be presented in distinct environments. In this study, Turkish fermented sausage (sucuk) was tested for the presence of EPS producer LAB strains and slimy-mucoid colonies were selected for further tests. Among the isolates, Weissella confusa strain S6 was identified and tested for the physicochemical characterisation of its EPS. This strain was found to produce 0.74 g L
-1 of EPS in modified BHI medium conditions. Structural characterisation of EPS S6 by1 H and13 C NMR demonstrated that EPS S6 was a highly branched dextran type glucan formed by mainly (1 → 2)-linked α-d-glucose units together with low levels of (1 → 3)-linked α-d-glucose units as branching points. This structure was further confirmed by methylation analysis detected by GC-MS. An average molecular weight of 8 × 106 Da was detected for dextran S6. The FTIR analysis supported the dextran structure and revealed the presence of distinct functional groups within dextran S6 structure. A strong thermal profile was observed for dextran S6 detected by DSC and TGA analysis and dextran S6 revealed a degradation temperature of 289 °C. In terms of physical status, dextran S6 showed amorphous nature detected by XRD analysis. SEM analysis of dextran S6 demonstrated its rough, compact and porous morphology whereas AFM analysis of dextran S6 detected in its water solution showed the irregularity with no clear cross-link within the dextran chains. These technological features of dextran S6 suggests its potential to be used for in situ or ex situ application during meat fermentations., Competing Interests: Declaration of competing interest The authors of the manuscript entitled as ‘Physicochemical and structural characterisation of a branched dextran type exopolysaccharide (EPS) from Weissella confusa S6 isolated from fermented sausage (Sucuk)’ have no conflict of interests related to this manuscript., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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19. Genetic diversity and phylogenetic relationships of Streptococcus thermophilus isolates from traditional Turkish yogurt: multilocus sequence typing (MLST).
- Author
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Kiraz D, Özcan A, Yibar A, and Dertli E
- Subjects
- Multilocus Sequence Typing methods, Phylogeny, RNA, Ribosomal, 16S genetics, Turkey, Polymorphism, Genetic, Genetic Variation, Streptococcus thermophilus genetics, Yogurt
- Abstract
Yogurt, a globally consumed fermented dairy product, is recognized for its taste and potential health benefits attributed to probiotic bacteria, particularly Streptococcus thermophilus. In this study, we employed Multilocus Sequence Typing (MLST) to investigate the genetic diversity and phylogenetic relationships of 13 S. thermophilus isolates from traditional Turkish yogurt samples. We also assessed potential correlations between genetic traits and geographic origins. The isolates were identified as S. thermophilus using VITEK
® MALDI-TOF MS, ribotyping, and 16S rRNA analysis methods. MLST analysis revealed 13 different sequence types (STs), with seven new STs for Turkey. The most prevalent STs were ST/83 (n = 3), ST/135 (n = 2), and ST/134 (n = 2). eBURST analysis showed that these isolates mainly were singletons (n = 7) defined as sequence types (STs) that cannot be assigned to any group and differ at two or more alleles from every other ST in the sample. This information suggests that the isolates under study were genetically distinct from the other isolates in the dataset, highlighting their unique genetic profiles within the population. Genetic diversity analysis of ten housekeeping genes revealed polymorphism, with some genes showing higher allelic variation than others. Tajima's D values suggested that selection pressures differed among these genes, with some being more conserved, likely due to their vital functions. Phylogenetic analysis revealed distinct genetic diversity between Turkish isolates and European and Asian counterparts. These findings demonstrate the genetic diversity of S. thermophilus isolates in Turkish yogurt and highlight their unique evolutionary patterns. This research contributes to our understanding of local microbial diversity associated with yogurt production in Turkey and holds the potential for identifyic strains with enhanced functional attributes., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2024
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20. Production of Novel Bigels from Cold Pressed Chia Seed Oil By-Product: Application in Low-Fat Mayonnaise.
- Author
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Alkabaa AS, Akcicek A, Taylan O, Balubaid M, Alamoudi M, Gulzar WA, Alidrisi H, Dertli E, and Karasu S
- Abstract
The objective of this study was to produce an innovative bigel formulation by combining glycerol monostearate (GMS) oleogel with hydrogels stabilized by various agents, including cold pressed chia seed oil by-product gum (CSG), gelatin (G), and whey protein concentrate (WPC). The findings indicated that the choice of hydrogel influenced the rheological, textural, and microstructural properties of the bigels. The G ' value of the bigel samples was higher than G ″, indicating that all the bigels exhibited solid-like characteristics. In order to numerically compare the dynamic rheological properties of the samples, K ' and K ″ values were calculated using the power law model. K ' values of the samples were found to be higher than K ″ values. The K ' value of bigel samples was significantly affected by the hydrogel (HG)/oleogel ratio (OG) and the type of stabilizing agent used in the hydrogel formulation. As the OG ratio of bigel samples increased, the K ' value increased significantly ( p < 0.05). The texture values of the samples were significantly affected by the HG/OG ratio ( p < 0.05). The study's findings demonstrated that utilizing CSG, G, and WPC at an OG ratio more than 50% can result in bigels with the appropriate hardness and solid character. The low-fat mayonnaise was produced by using these bigels. The low-fat mayonnaise showed shear-thinning and solid-like behavior with G ' values greater than the G ″ values. Low-fat mayonnaise produced with CSG bigels (CSGBs) showed similar rheological properties to the full-fat mayonnaise. The results showed that CSG could be used in a bigel formulation as a plant-based gum and CSGB could be used as a fat replacer in low-fat mayonnaise formulation.
- Published
- 2024
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21. Optimization of asymmetric bioreduction conditions of 1-indanone by Leuconostoc mesenteroides N6 using a face-centered design-based multi-objective optimization model.
- Author
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Alamoudi M, Özdemir A, Dertli E, Bolubaid M, Alidrisi HM, Taylan O, Yılmaz MT, and Şahin E
- Subjects
- Ketones, Lactobacillales chemistry, Leuconostoc mesenteroides
- Abstract
There has been an increasing interest in biocatalysts over the past few decades in order to obtain high efficiency, high yield, and environmentally benign procedures aiming at the manufacture of pharmacologically relevant chemicals. Lactic Acid Bacteria (LAB), a microbial group, can be employed as biocatalysts while performing asymmetric reduction of prochiral ketones. In this study, Leuconostoc mesenteroides N6 was used for the asymmetric bioreduction 1-indanone. And then, a novel and innovative face-centered design-based multi-objective optimization model was used to optimize experimental conditions. Also, the experimental design factors were defined as agitation speed, incubation period, pH, and temperature for optimization to acquire the maximum enantiomeric excess (ee) and conversion rate (cr) values. When using the face-centered design-based multi-objective optimization model, the optimum culture conditions corresponded to 96.34 and 99.42%, ee and cr responses, respectively, were pH = 5.87, incubation temperature = 35 °C, incubation period = 50.88 h, and agitation speed = 152.60 rpm. Notably, the validation experiment under the optimum model conditions confirmed the model results. This study demonstrated the importance of the optimization and the efficiency of the face-centered design-based multi-objective model.
- Published
- 2024
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22. Exopolysaccharides from Enterococcus faecium and Streptococcus thermophilus : Bioactivities, gut microbiome effects, and fermented milk rheology.
- Author
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Tarique M, Ali AH, Kizhakkayil J, Liu SQ, Oz F, Dertli E, Kamal-Eldin A, and Ayyash M
- Abstract
Exopolysaccharides (EPSs) are carbohydrate polymers that can be produced from probiotic bacteria. This study characterized the EPSs from Enterococcus faecium (EPS-LB13) and Streptococcus thermophilus (EPS-MLB10) and evaluated their biological and technological potential. The EPSs had high molecular weight and different monosaccharide compositions. The EPSs exhibited various biological activities at 250 mg/L, such as scavenging free radicals (10 % to 88.8 %), enhancing antioxidant capacity (714 to 2848 µg/mL), inhibiting pathogens (53 % to 74 %), and suppressing enzymes and cancer cells (2 % to 83 %), etc. The EPSs supported the growth of beneficial gut bacteria from Proteobacteria, Bacteroidetes, Firmicutes, and Acinetobacter in fecal fermentation with total Short-chain fatty acids production from 5548 to 6023 PPM. Moreover, the EPSs reduced the gelation time of fermented skimmed bovine milk by more than half. These results suggest that the EPSs from LB13 and MLB10 have promising applications in the dairy and pharmaceutical industries., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: None., (© 2023 The Author(s).)
- Published
- 2023
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23. Optimization of asymmetric bioreduction conditions of 1-(thiophen-2-yl)ethanone by Weissella cibaria N9 using a desirability function-embedded face-centered optimization model.
- Author
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Bolubaid M, Özdemir A, Dertli E, Alamoudi M, Taylan O, Karaboğa D, Yılmaz MT, and Şahin E
- Subjects
- Temperature, Ketones, Alcohols, Weissella
- Abstract
Prochiral ketones can be effectively bio-reduced to chiral secondary alcohols by whole-cell biocatalysts, which are possible useful precursors to synthesize physiologically active chemicals and natural products. When whole-cell biocatalysts strains are used, bioreduction process can be influenced by various cultural factors, and it is vital to optimize these factors that affect selectivity, conversion rate, and yield. In this study, Weissella cibaria N9 was used as whole-cell biocatalyst for bioreduction of 1-(thiophen-2-yl)ethanone, and cultural design factors were optimized using a desirability function-embedded face-centered optimization model. For this, effects of pH (4.5-5.5-6.5, x
1 ), (2) temperature (25-30-35 °C, x2 ), (3) incubation period (24-48-72 h, x3 ), and (4) agitation speed (100-150-200 rpm, x4 ) on two response variables; (1) ee (%) and (2) cr (%) were tested. Next, desirability function-embedded face-centered optimization model revealed that a pH of 6.43, a temperature of 26.04 °C, an incubation period of 52.41 h, and an agitation speed of 150 rpm were the optimum levels and the estimated ee and cr responses were 99.31% and 98.16%, respectively. Importantly, the actual experimental ee and cr responses were similar to the estimated values indicating the capability of the offered desirability function-embedded face-centered optimization model when using the optimum cultural conditions.- Published
- 2023
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24. The characterization of the non-starter lactic acid bacteria and yeast microbiota and the chemical and aromatic properties of traditionally produced Turkish White Cheese.
- Author
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Macit E, Yücel N, and Dertli E
- Subjects
- Turkey, Cheese, Lactobacillales genetics, Lactobacillus plantarum, Microbiota
- Abstract
Turkish White Cheese is a brined (or pickled) cheese with a salty, acidic flavor and a soft or semi-hard texture. It is the most produced and consumed type of cheese in Turkey. The purpose of this study was to determine the non-starter lactic acid bacteria and yeast microbiota of traditionally produced Turkish White Cheese and analyze the chemical properties and the aroma profile of the cheese. The results of the study identified 27 distinct strains belonging to 14 the non-starter lactic acid bacteria species and 49 different strains belonging to 11 yeast species. Lactobacillus plantarum was found to be the dominant species among the lactic acid bacteria, while Candida zeylanoides was the dominant yeast species in the White Cheese samples. In addition, Kluyveromyces lactis and Debaryomyces hansenii were prominent yeast species in cheese samples. Turkish White Cheese samples had different aromatic properties. The study is highly significant as it anaylzed both non-starter lactic acid bacteria and yeast microbiota of traditionally produced Turkish White Cheese through molecular methods. It also determined and analyzed a number of chemical and aromatic properties of White Cheese., (© 2023. The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia.)
- Published
- 2023
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25. Multilocus sequence typing of L. bulgaricus and S. thermophilus strains from Turkish traditional yoghurts and characterisation of their techno-functional roles.
- Author
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Dikmen H, Goktas H, Demirbas F, Kayacan S, Ispirli H, Arici M, Turker M, Sagdic O, and Dertli E
- Abstract
In this study, Streptococcus thermophilus and Lactobacillus bulgaricus strains from traditional Turkish yoghurts were isolated, identified by 16S rRNA sequencing and genotypically 14 S. thermophilus and 6 L. bulgaricus strains were obtained as distinct strains by MLST analysis. Lactic acid production levels of the L. bulgaricus strains were higher than S. thermophilus strains. HPLC analysis showed that EPS monosaccharide composition of the strains mainly consisted of glucose and galactose. In general, all strains were found to be susceptible for antibiotics, except some strains were resistance to gentamicin and kanamycin. Apart from two strains of S. thermophilus , all strains displayed strong auto-aggregation level greater than 95% at 24 h incubation. S. thermophilus strains showed higher cell surface hydrophobicity than L. bulgaricus strains. This study demonstrated the isolation, identification, genotypic discrimination and techno-functional features of wild type yoghurt starter cultures which can potentially find place in industrial applications., Supplementary Information: The online version contains supplementary material available at 10.1007/s10068-023-01366-2., Competing Interests: Conflict of interestThe writers inform no conflict of interest., (© The Korean Society of Food Science and Technology 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
- Published
- 2023
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26. Structural characterization of potato starch modified by a 4,6-α-glucanotransferase B from Lactobacillus reuteri E81.
- Author
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Hassanein WS, İspirli H, Dertli E, and Yilmaz MT
- Subjects
- Starch chemistry, Limosilactobacillus reuteri, Solanum tuberosum, Glycogen Debranching Enzyme System chemistry
- Abstract
The recent reports have revealed that increase in amount of α-1,6 linkages by modification of potato starch with enzyme (glycosyltransferases) treatment gains slowly digestible properties to the starch; however, the formation of new α-1,6-glycosidic linkages diminish the thermal resistance of the starch granules. In this study, a putative GtfB-E81, (a 4,6-α-glucanotransferase-4,6-αGT) from L. reuteri E81 was firstly used to produce a short length of α-1,6 linkages. NMR results revealed that external short chains mostly comprised of 1-6 glucosyl units were newly produced in potato starch, and the α-1,6 linkage ratio was significantly increased from 2.9 % to 36.8 %, suggesting that this novel GtfB-E81 might have potentially an efficient transferase activity. In our study, native and GtfB-E81 modified starches showed fundamental similarities with respect to their molecular properties and treatment of native potato starch with GtfB-E81 did not remarkably change thermal stability of the potato starch, which seems to be very prominent for the food industry given the significantly decreased thermal stability results obtained for the enzyme modified starches reported in the literature. Therefore, the results of this study should open up emerging perspectives for regulating slowly digestible characteristics of potato starch in future studies without a significant change in the molecular, thermal, and crystallographic properties., Competing Interests: Declaration of competing interest The authors declare that there is no conflict of interest., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
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27. Utilisation of an active branching sucrase from Lactobacillus kunkeei AP-37 to produce techno-functional poly-oligosaccharides.
- Author
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İspirli H, Korkmaz K, Arioglu-Tuncil S, Bozkurt F, Sağdıç O, Tunçil YE, Narbad A, and Dertli E
- Subjects
- Oligosaccharides chemistry, Glycosyltransferases metabolism, Glucans, Glucose, Prebiotics, Dextrans metabolism, Sucrase chemistry
- Abstract
Glucansucrase AP-37 was extracted from the culture supernatant of Lactobacillus kunkeei AP-37 and characteristics of the glucan produced by the active glucansucrase in terms of structural and functional roles were determined in this study. A molecular weight around 300 kDa was observed for glucansucrase AP-37 and its acceptor reactions with maltose, melibiose and mannose were also conducted to unveil the prebiotic potential of the poly-oligosaccharides formed via these reactions. The core structure of glucan AP-37 was determined by
1 H and13 C NMR and GC/MS analysis which revealed that glucan AP-37 was a highly branched dextran composing of high levels of (1 → 3)-linked α-d-glucose units with low levels of (1 → 2)-linked α-d-glucose units. The structural features of the glucan formed, demonstrated that glucansucrase AP-37 was an α-(1 → 3) branching sucrase. Dextran AP-37 was further characterised by FTIR analysis and XRD analysis demonstrated its amorphous nature. A fibrous compact morphology was observed for dextran AP-37 with SEM analysis whereas TGA and DSC analysis revealed its high stability as no degradation was observed up to 312 °C. Finally, the prebiotic potential of the dextran AP-37 and the gluco-oligosaccharides produced with the acceptor reaction of α-(1 → 3) branching sucrase AP-37 were determined and promising results were found for the gluco-oligosaccharides to act as prebiotics., Competing Interests: Declaration of competing interest The authors declare no conflict of interests., (Copyright © 2023 Elsevier B.V. All rights reserved.)- Published
- 2023
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28. Extracellular recombinant production of 4,6 and 4,3 α-glucanotransferases in Lactococcus lactis.
- Author
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Bıyıklı A, Niçin RT, Dertli E, and Şimşek Ö
- Subjects
- Starch, Glucosyltransferases, Lactococcus lactis genetics, Limosilactobacillus reuteri, Glycogen Debranching Enzyme System genetics, Glycogen Debranching Enzyme System chemistry
- Abstract
4,6 α-Glucanotransferase (4,6-α-GTase) and 4,3 α-glucanotransferases (4,3-α-GTase) produced by Lactic Acid Bacteria (LAB) in the GH70 enzyme family have become important due to their catalytic effect on starch and maltodextrins. Their high level of production is necessary for their application at industrial scale. In this respect, both enzymes were expressed extracellularly using Lactococcus lactis as GRAS host. 4,6-α-GTase and 4,3-α-GTase genes from Limosilactobacillus reuteri E81 and Limosilactobacillus fermentum PFC282 respectively were transformed into the plasmid pLEB124 vector having the signal peptide usp45 under the P45 continuous promoter and successfully expressed in Lactococcus lactis MG1363. Western blot screening showed that the relevant enzymes were able to be successfully secreted extracellularly. The Vmax and Km of 4,6-α-GTase were 2.58 µmol min
-1 and 0054 mg min-1 whereas 3369 µmol min-1 and 0032 mg min-1 for 4,3-α-GTase respectively. NMR analysis demonstrated the formation of new bonds within the corresponding enzymes. Also, both enzymes were active on maltose, maltoheptaose, maltohexaose and starch and produced malto-oligosaccarides observed by TLC analysis. In conclusion, this study demonstrated first time the extracellular production of 4,6-α-GTase and 4,3-α-GTase with GRAS status that can be useful for starch retrogradation delay and glycaemic index reduction., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier Inc. All rights reserved.)- Published
- 2023
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29. Utilization of exopolysaccharide produced by Leuconostoc lactis GW-6 as an emulsifier for low-fat mayonnaise production.
- Author
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Yalmanci D, Dertli E, Tekin-Cakmak ZH, and Karasu S
- Subjects
- Emulsions, Whey Proteins, Emulsifying Agents, Leuconostoc
- Abstract
This study aimed to investigate the potential usage of exopolysaccharide (EPS) produced by Leuconostoc lactis GW-6 species as an emulsifier in a low-fat mayonnaise by the formation of a complex with whey protein isolate (WPI) to improve rheological properties, emulsion, and oxidative stability. For the determination of rheological properties, the flow behavior, frequency sweep, and 3-ITT rheological properties of low-fat mayonnaise samples were studied. All samples showed shear thinning, viscoelastic solid-like, and recoverable character. The K and n values for the mayonnaise samples were determined as 24.529-174.403 Pa.s
n and 0.166-0.304, respectively, indicating that shear-thinning characters could be improved with WPI-EPS interaction. The higher K' and K″ values of all low-fat samples prepared with EPS-WPI than the low-fat control sample explained the synergistic effect of EPS and WPI. Importantly, no effect was observed when WPI was used as alone as an emulsifier. Oxidative stability was tested by OXITEST and IP values of samples prepared by WPI and EPS were compared to control samples. In conclusion, the results of this study showed that the EPS and WPI interaction can significantly affect the rheological properties and emulsion and oxidative stability of mayonnaise samples., Competing Interests: Declaration of competing interest We wish to draw the attention of the Editor to the following facts which may be considered as potential conflicts of interest and to significant financial contributions to this work. We confirm that the manuscript has been read and a approved by all named authors and that there are no other persons who satisfied the criteria for authorship but are not listed. We further confirm that the order of authors listed in the manuscript has been approved by all of us., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2023
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30. Isolation and characterization of yogurt starter cultures from traditional yogurts and growth kinetics of selected cultures under lab-scale fermentation.
- Author
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Kayacan Çakmakoğlu S, Vurmaz M, Bezirci E, Kaya Y, Dikmen H, Göktaş H, Demirbaş F, Encu B, Acar Soykut E, Alemdar F, Çakır İ, Durak MZ, Arıcı M, Sağdıç O, Türker M, and Dertli E
- Subjects
- Fermentation, Kinetics, Food Industry, Yogurt, Lactobacillus delbrueckii
- Abstract
The development of new starter cultures is a crucial task for the food industry to meet technological requirements and traditional products are important reservoirs for new starter cultures. In this respect, this study aimed to isolate, identify, and determine the technological characteristics of Lactobacillus delbrueckii subsp. bulgaricus and Streptococcus thermophilus strains originated from traditional yogurt samples. Genotypic discrimination of 200 isolates revealed the presence of distinct 19 S. thermophilus and 11 Lb. delbrueckii subsp. bulgaricus strains as potential starter cultures. Strain-specific properties determined the acidification capacity of the yogurt starter cultures and a higher acidification capacity was observed for S. thermophilus strains compared to Lb. delbrueckii subsp. bulgaricus strains. Proteolytic activity was found between 0.012-0.172 and 0.078-0.406 for S. thermophilus and Lb. delbrueckii subsp. bulgaricus strains, respectively. 4 of S. thermophilus and 3 of Lb. delbrueckii subsp. bulgaricus strains were found resistant to all tested bacteriophages. The antibiotic susceptibility tests of the isolates revealed that a very low antibiotic resistance was observed for the yogurt starter cultures. Finally, the growth kinetics of selected strains were determined and the maximum specific growth rate of selected S. thermophilus and Lb. delbrueckii subsp. bulgaricus was calculated as 0.527 h
-1 and 0.589 h-1 , respectively.- Published
- 2023
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31. Bioactive and technological properties of an α-D-glucan synthesized by Weissella cibaria PDER21.
- Author
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Yilmaz MT, Ispirli H, Taylan O, Alamoudi M, and Dertli E
- Subjects
- Polysaccharides metabolism, Solubility, Glucans chemistry, Weissella metabolism
- Abstract
A slimy-mucinous-type colony of EPS-producing Weissella cibaria PDER21 was isolated and identified. The monomer composition was glucose, showing that the EPS is a glucan type homopolysaccharide, The core structure of (1 → 6)-linked α-d-glucose units including (1 → 3)-linked α-d-glucose branches at a ratio of 93.4/6.6 was revealed by
1 H and13 C NMR spectra and confirmed by FTIR analysis. The glucan showed a superior thermal stability with almost no degradation in structure up to 300 °C. XRD analysis revealed the amorphous structure while SEM analysis confirmed the layer-like morphology. The glucan had an antioxidant activity (89.5%), water-holding capacity (103.7%) and water solubility index (80.7%) values, suggesting that the glucan had a strong level of antioxidant properties; good water binding capacity and excellent solubility. The glucan PDER21 is a polysaccharide possessing a good combination of technical and functional attributes, suggesting a great deal of potential for use in the food industry., (Copyright © 2021. Published by Elsevier Ltd.)- Published
- 2022
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32. Structural and bioactive characteristics of a dextran produced by Lactobacillus kunkeei AK1.
- Author
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Yilmaz MT, İspirli H, Taylan O, Bilgrami AL, and Dertli E
- Subjects
- Antioxidants chemistry, Antioxidants pharmacology, Molecular Weight, Polysaccharides, Bacterial chemistry, Dextrans chemistry, Lactobacillus metabolism
- Abstract
In this study, structural and techno-functional characteristics of an exopolysaccharide (EPS) produced by Lactobacillus kunkeei AK1 were determined. High-performance liquid chromatography (HPLC) analysis demonstrated that EPS AK1 was composed of only glucose units.
1 H and13 C Nuclear magnetic resonance (NMR) analysis revealed that EPS AK1 was a dextran type EPS containing 4.78% (1 → 4)-linked α-d-glucose branches. The molecular weight of EPS AK1 was determined to be 45 kDa by Gel Permeation Chromatography (GPC) analysis. A high level of thermal stability up to 280 °C was determined for dextran AK1 detected by Differential scanning calorimetry (DSC) and Thermogravimetric analysis (TGA). Dextran AK1 appeared as regular spheres with compact morphology and as irregular particles in the solution with no clear cross-linking between the chains of the polysaccharide observed by Scanning electron microscopy (SEM) and Atomic force microscopy (AFM) analysis, respectively. X-ray diffraction analysis (XRD) analysis demonstrated that dextran AK1 had a crystalline structure. A relatively strong antioxidant activity was observed for dextran AK1 determined by 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2'-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS) radical scavenging and cupric reducing antioxidant capacity (CUPRAC) tests. Finally, only a digestion ratio of 3.1% was observed for dextran AK1 following the in vitro simulated gastric digestion test., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
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33. Production and characterization of yeast extracts produced by Saccharomyces cerevisiae , Saccharomyces boulardii and Kluyveromyces marxianus .
- Author
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Demirgül F, Şimşek Ö, Bozkurt F, Dertli E, and Sağdıç O
- Subjects
- Fermentation, Saccharomyces cerevisiae metabolism, Sodium Glutamate metabolism, Kluyveromyces metabolism, Saccharomyces boulardii
- Abstract
In recent years, prejudice in society against monosodium glutamate (MSG) has directed food manufacturers to alternative sources. Yeast extracts are considered as "natural" due to the production process and stand out due to their nutritional properties as well as giving a flavor similar to MSG. In this study, chemical, functional and flavor properties of yeast extract powders produced from Saccharomyces cerevisiae TGM10, Saccharomyces boulardii S11 and Kluyveromyces marxianus TGM66 were evaluated. Results revealed that the most protein-rich sample was S. cerevisiae TGM10 extract (69.17%), followed by S. boulardii S11 (66.16%) and K. marxianus TGM66 (62.42%) extracts, respectively and S. cerevisiae TGM10 extract was also the richest yeast extract for essential amino acids. Additionally, flavor-enhancing amino acids such as glutamic acid, aspartic acid, alanine and glycine were dominant in S. cerevisiae TGM10 extract (47.41 g/100 g protein). Sensorial evaluation of yeast extracts demonstrated that salty taste, umami taste and meaty flavor scores of yeast extracts were lower than MSG whereas for fruity flavor, yeast extracts had the highest scores. These findings revealed the potential of three yeast strains to produce yeast extracts in order to increase the nutritional value and flavor of foods.
- Published
- 2022
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34. Optimization of asymmetric reduction conditions of 1-(benzo [d] [1,3] dioxol-5-yl) ethanone by Lactobacillus fermentum P1 using D -optimal experimental design-based model.
- Author
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Özdemir A, Dertli E, and Şahin E
- Subjects
- Biocatalysis, Hydrogen-Ion Concentration, Oxidation-Reduction, Stereoisomerism, Temperature, Benzene Derivatives chemistry, Limosilactobacillus fermentum metabolism
- Abstract
The biocatalytic asymmetric reduction of prochiral ketones is a significant transformation in organic chemistry as chiral carbinols are biologically active molecules and may be used as precursors of many drugs. In this study, the bioreduction of 1-(benzo [d] [1,3] dioxol-5-yl) ethanone for the production of enantiomerically pure ( S )-1-(1,3-benzodioxal-5-yl) ethanol was investigated using freeze-dried whole-cell of Lactobacillus fermentum P1 and the reduction conditions was optimized with a D -optimal experimental design-based optimization methodology. This is the first study using this optimization methodology in a biocatalytic asymmetric reduction. Using D -optimal experimental design-based optimization, optimum reaction conditions were predicted as pH 6.20, temperature 30 °C, incubation time 30 h, and agitation speed 193 rpm. For these operating conditions, it was estimated that the product could be obtained with 94% enantiomeric excess (ee) and 95% conversion rate (cr). Besides, the actual ee and cr were found to be 99% tested under optimized reaction conditions. These findings demonstrated that L. fermentum P1 as an effective biocatalyst to obtain ( S )-1-(1,3-benzodioxal-5-yl) ethanol and with the D -optimal experimental design-based optimization, this product could be obtained with the 99% ee and 99% cr. Finally, the proposed mathematical optimization technique showed the applicability of the obtained results for asymmetric reduction reactions.
- Published
- 2022
- Full Text
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35. Comparison of culture-dependent and culture-independent techniques in the detection of lactic acid bacteria biodiversity and dynamics throughout the ripening process: The case of Turkish artisanal Tulum cheese produced in the Anamur region.
- Author
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Demirci T, Oraç A, Aktaş K, Dertli E, Akyol I, and Akın N
- Subjects
- Animals, Biodiversity, DNA, Bacterial genetics, Food Microbiology, RNA, Ribosomal, 16S genetics, Cheese analysis, Lactobacillales
- Abstract
Our objective was to analyze the diversity of the microbiota over 180 d of ripening of eight batches of artisanal goatskin Tulum cheeses by culture-dependent and culture-independent (PCR-DGGE) methods. V3 region of the bacterial 16S rRNA gene was amplified with the PCR after direct DNA isolation from the cheese samples. Nine different species and five genera were determined by culturing, while 11 species were identified in the PCR-DGGE technique. This diversity revealed the uniqueness of artisanal cheese varieties. The dominant genera in all the cheese samples were composed of Enterococcus species. The culture-dependent method revealed five genera (Enterococcus,Bacillus,Lactococcus,Lactobacillus, Sphingomonas) while three genera (Enterococcus, Streptococcus, Lactococcus) were detected in the culture-independent method. It was concluded that combining the two methods is important for characterizing the whole microbiota of the Tulum cheese varieties produced in the Anamur region.
- Published
- 2021
- Full Text
- View/download PDF
36. Effects of GSM 1800 band radiation on composition, structure and bioactivity of exopolysaccharides produced by yoghurt starter cultures.
- Author
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Karatas SM, Ekici L, Develi I, Dertli E, and Sagdic O
- Subjects
- Fermentation radiation effects, Lactobacillus delbrueckii metabolism, Streptococcus thermophilus metabolism, Yogurt analysis, Cell Phone instrumentation, Electromagnetic Radiation, Polysaccharides, Bacterial metabolism, Polysaccharides, Bacterial radiation effects, Yogurt microbiology
- Abstract
In this study, the effects of GSM 1800 band radiation on composition, structure and bioactivity of exopolysaccharides (EPSs) produced by Lactobacillus delbrueckii subsp. bulgaricus and Streptococcus thermophilus were determined. For this, GSM 1800 band radiation was applied to both cultures and characteristics of EPSs extracted from the control groups (K) and the radiation stressed groups (R) were determined. An alteration in the chemical composition of the EPSs was observed and EPS production levels and molecular weights of the EPSs increased following the GSM 1800 band radiation application. Alterations in the functional groups, thermal and morphological characteristics of EPSs following the GSM 1800 band radiation application were confirmed by FTIR, TGA and SEM analysis, respectively. Importantly no alterations in the antioxidant and antibacterial activity of the EPSs were observed following the radiation application. These results suggested the effects of the GSM radiation on final characteristics of EPSs from yogurt starter cultures.
- Published
- 2021
- Full Text
- View/download PDF
37. Synthesis of silver nanoparticles prepared with a dextran-type exopolysaccharide from Weissella cibaria MED17 with antimicrobial functions.
- Author
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İspirli H, Sagdic O, and Dertli E
- Subjects
- Anti-Bacterial Agents chemistry, Anti-Infective Agents pharmacology, Antifungal Agents chemistry, Bacteria drug effects, Ions, Microbial Sensitivity Tests, Nanoparticles, Plant Extracts chemistry, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Stress, Mechanical, Temperature, Thermogravimetry, X-Ray Diffraction, Dextrans chemistry, Metal Nanoparticles chemistry, Polysaccharides chemistry, Silver chemistry, Weissella metabolism
- Abstract
Microbial polysaccharides can find distinct applications as stabilizer agents including synthesis of nanoparticles. In this study, a dextran-type exopolysaccharide (EPS) was used as the stabilizer agent for the green synthesis of silver nanoparticles (AgNPs-Dex) with antimicrobial characteristics. UV-vis spectroscopy analysis was used to test the formation of AgNPs-Dex. The uniform morphology at around 10 nm size was observed for AgNPs-Dex by TEM analysis and importantly EDX analysis demonstrated the embedment of Ag
+ ions within dextran as the stabilizer agent. XRD analysis confirmed the crystalline nature of AgNPs-Dex and FTIR analysis demonstrated the interactions of dextran functional groups with silver. DSC and TGA analysis showed the alteration in the thermal stability of AgNPs-Dex compared to the stabilizer dextran. The antibacterial and antifungal activities of AgNPs-Dex were determined against food originated pathogenic bacteria and fungi and important inhibition levels were observed at 1 mg ml-1 concentration of AgNPs-Dex and this activity was observed to be concentration dependent.- Published
- 2021
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38. Synthesis of alternan-stabilized zinc nanoparticles: morphological, thermal, antioxidant and antimicrobial characterization.
- Author
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Yücel N, İspirli H, Mercan E, Erdoğan Ü, and Dertli E
- Subjects
- Excipients isolation & purification, Glucans isolation & purification, Microbial Sensitivity Tests, Microscopy, Electron, Transmission, Particle Size, Spectroscopy, Fourier Transform Infrared, X-Ray Diffraction, Anti-Bacterial Agents chemistry, Antifungal Agents chemistry, Antioxidants chemistry, Excipients chemistry, Glucans chemistry, Limosilactobacillus reuteri metabolism, Metal Nanoparticles chemistry, Temperature, Zinc chemistry
- Abstract
This study aimed to synthesize zinc nanoparticles with antimicrobial and antioxidant activities using alternan (ZnNPs-Alt) produced by Lactobacillus reuteri E81 as the stabilizing agent. For the characterization of the ZnNPs-Alt, UV-vis spectroscopy, SEM, TEM and EDX analysis, XRD, FTIR and DSC analysis were applied. The functional role of ZnNPs-Alt was tested by determination of their antioxidant activities by DPPH and CUPRAC methodologies and their antibacterial and antifungal activities. Results of this study demonstrated that alternan was utilized as a successful stabilizer to produce crystalline, thermally stabile ZnNPs-Alt with a particle size of ∼ 100 nm. Importantly, strong antioxidant and antimicrobial activities were observed for ZnNPs-Alt in a concentration dependent manner. These findings confirmed the role of alternan as a stabilizing agent for the production of ZnNPs-Alt with functional roles.
- Published
- 2021
- Full Text
- View/download PDF
39. Structural and physicochemical characterisation and antioxidant activity of an α-D-glucan produced by sourdough isolate Weissella cibaria MED17.
- Author
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Aburas H, İspirli H, Taylan O, Yilmaz MT, and Dertli E
- Subjects
- Carbohydrate Conformation, Free Radical Scavengers chemistry, Free Radical Scavengers isolation & purification, Glucans chemistry, Glucans isolation & purification, Polysaccharides, Bacterial chemistry, Polysaccharides, Bacterial isolation & purification, Weissella chemistry
- Abstract
An exopolysaccharide (EPS) producer slimy-mucoid type colony was isolated from sourdough and identified as Weissella cibaria MED17. The
1 H and13 C NMR spectra of EPS MED17 demonstrated that this EPS was a dextran type glucan ((1 → 6)-linked α-D-glucose core structure) containing (1 → 3)-linked α-D-glucose branches and proportion of (1 → 6)-linked α-D-glucose units to (1 → 3)-linked α-D-glucose units was 94.3:5.7%. The FTIR analysis also confirmed the (1 → 6)-linked α-D-glucose linkage. A high level of thermal stability was observed for glucan MED17 as no degradation up to 300 °C was observed by TGA and DSC analysis. The XRD analysis of glucan MED17 showed its semi- crystalline nature and its compact sheet-like morphology was observed by SEM analysis. Finally, antioxidant characteristics of glucan MED17 were determined by ABTS and DPPH radical scavenging activity tests that revealed a moderate antioxidant activity of glucan MED17. These findings show potential techno-functional characteristics of glucan MED17., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
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40. An alternative way to encapsulate probiotics within electrospun alginate nanofibers as monitored under simulated gastrointestinal conditions and in kefir.
- Author
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Yilmaz MT, Taylan O, Karakas CY, and Dertli E
- Subjects
- Alginates chemistry, Capsules chemistry, Capsules metabolism, Gastrointestinal Tract microbiology, Humans, Microbial Viability, Molecular Structure, Particle Size, Probiotics chemistry, Surface Properties, Alginates metabolism, Gastrointestinal Tract metabolism, Kefir microbiology, Lacticaseibacillus paracasei metabolism, Nanofibers chemistry, Probiotics metabolism
- Published
- 2020
- Full Text
- View/download PDF
41. Corrigendum: Highly Enantioselective Production of Chiral Secondary Alcohols with Candida zeylanoides as a New Whole Cell Biocatalyst.
- Author
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Şahin E and Dertli E
- Published
- 2020
- Full Text
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42. Determining the optimum model parameters for oligosaccharide production efficiency using response surface integrated particle swarm optimization method: an experimental validation study.
- Author
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Şensoy AT, İspirli H, and Dertli E
- Subjects
- Biocatalysis, Escherichia coli genetics, Escherichia coli metabolism, Glycosyltransferases genetics, Industrial Microbiology, Limosilactobacillus reuteri genetics, Limosilactobacillus reuteri metabolism, Maltose metabolism, Models, Biological, Sucrose metabolism, Glycosyltransferases metabolism, Limosilactobacillus reuteri enzymology, Oligosaccharides metabolism
- Abstract
Glucansucrases (GTFs) catalyzes the synthesis of α-glucans from sucrose and oligosaccharides in the presence of an acceptor sugar by transferring glucosyl units to the acceptor molecule with different linkages. The acceptor reactions can be affected by several parameters and this study aimed to determine the optimal reaction parameters for the production of glucansucrase-based oligosaccharides using sucrose and maltose as the donor and acceptor sugars, respectively via a hybrid technique of Response Surface Method (RSM) and Particle Swarm Optimization (PSO). The experimental design was performed using Central Composite Design and the tested parameters were enzyme concentration, acceptor:donor ratio and the reaction period. The optimization studies showed that enzyme concentration was the most effective parameter for the final oligosaccharides yields. The optimal values of the significant parameters determined for enzyme concentration and acceptor:donor ratio were 3.45 U and 0.62, respectively. Even the response surface plots for input parameters verified the PSO results, an experimental validation study was performed for the reverification. The experimental verification results obtained were also consistent with the PSO results. These findings will help our understanding in the role of different parameters for the production of oligosaccharides in the acceptor reactions of GTFs.
- Published
- 2020
- Full Text
- View/download PDF
43. Preparation of gentiobiose-derived oligosaccharides by glucansucrase E81 and determination of prebiotic and immune-modulatory functions.
- Author
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İspirli H, Colquhoun IJ, Şahin E, Sagdic O, and Dertli E
- Subjects
- HT29 Cells, Humans, Disaccharides chemistry, Disaccharides pharmacology, Glycosyltransferases metabolism, Immunologic Factors chemistry, Immunologic Factors pharmacology, Prebiotics
- Abstract
Gentiobiose-derived oligosaccharides were synthesized by the acceptor reaction of glucansucrase E81 obtained from Lactobacillus reuteri E81 with sucrose and gentiobiose as donor-acceptor sugars, respectively. The reaction products were monitored by TLC analysis and gentiobiose-derived oligosaccharides up to DP 8 were formed during the acceptor reaction as determined by ESI-MS/MS analysis. The glycosylation of the gentiobiose with α-(1 → 6) linkages and α-(1 → 3) linkages was shown by
1 H and13 C NMR analysis confirming the structure of these gentiobiose-derived oligosaccharides. The in vitro prebiotic function of the oligosaccharides was determined in which probiotic strains were stimulated whereas no growth was observed in pathogen strains. Gentiobiose-derived oligosaccharides showed immune-modulatory functions in vitro and triggered the production of IL-4, IL12 and TNF-α cytokines in HT29 cells in a dose dependent manner. This study showed the production and functional characterisation of gentiobiose-derived oligosaccharides establishing a promising avenue for future applications., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
44. Partial characterization of a levan type exopolysaccharide (EPS) produced by Leuconostoc mesenteroides showing immunostimulatory and antioxidant activities.
- Author
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Taylan O, Yilmaz MT, and Dertli E
- Subjects
- Antioxidants chemistry, Antioxidants metabolism, Antioxidants pharmacology, Fermentation, HT29 Cells, Humans, Immunologic Factors biosynthesis, Immunologic Factors chemistry, Immunologic Factors pharmacology, Molecular Weight, Polysaccharides, Bacterial biosynthesis, Temperature, Water chemistry, Fructans chemistry, Leuconostoc mesenteroides metabolism, Polysaccharides, Bacterial chemistry, Polysaccharides, Bacterial pharmacology
- Abstract
Leuconostoc mesenteroides S81 was isolated from traditional sourdough as an exopolysaccharide (EPS) producer strain. The monosaccharide composition of the EPS from strain S81 was characterized by HPLC analysis and only fructose was found in the repeating unit structure. The NMR spectroscopy analysis revealed that EPS was a levan type EPS as a β-(2 → 6)-linked fructan. The FTIR analysis further confirmed the presence of the furanoid rings in the EPS structure. The levan S81 showed high level of thermal stability determined by DSC and TGA analysis. The lyophilised levan S81 showed a sheet-like compact morphology and its aqueous solution formed spheroidal lumps with a compact structure detected by SEM and AFM analysis, respectively. Importantly the levan S81 showed a high level of immunomodulatory role, induced the anti-inflammatory cytokine IL-4, and exhibited a strong antioxidant capacity with EC
50 value 1.7 mg mL-1 obtained by hydroxyl radical scavenging activity test under in vitro conditions. These findings reveal potential of levan S81 for technological purposes and as a potential natural immunomodulatory and antioxidant., (Copyright © 2019. Published by Elsevier B.V.)- Published
- 2019
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45. Structural and technological characterization of ropy exopolysaccharides produced by Lactobacillus plantarum strains isolated from Tarhana .
- Author
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Zehir Şentürk D, Dertli E, Erten H, and Şimşek Ö
- Abstract
Exopolysaccharide producing starter cultures enable manufacturing "clean labeled" foods with improved textural and nutritional properties. The structural and technological analyses were performed on the ropy exopolysaccharides of six Lactobacillus plantarum. The incubation temperature, time and pH affected the exopolysaccharide production and high exopolysaccharide was produced in the presence of sucrose and maltose. The viscosity of exopolysaccharide was high at acidic conditions except PFC311E that showed viscous at neutral pH. Lactobacillus plantarum strains produced between 120 and 400 mg/L exopolysaccharide in which the highest was observed at L. plantarum PFC311. Exoploysaccharides were degraded over 300 °C except PFC311E that degraded at 295.7 °C. The NMR analyses revealed that the exopolysaccharides were synthesized by α1-6, α1-3 and α1-4 bonds with glucose, galactose and fructose moieties. In conclusion, L. plantarum PFC311 produced ropy exopolysaccharide with different structural, rheological and thermal properties and reveals potential to be used in food industry., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© The Korean Society of Food Science and Technology 2019.)
- Published
- 2019
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46. Characterization of a 4,6‑α‑glucanotransferase from Lactobacillus reuteri E81 and production of malto-oligosaccharides with immune-modulatory roles.
- Author
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İspirli H, Şimşek Ö, Skory C, Sağdıç O, and Dertli E
- Subjects
- Bacterial Proteins metabolism, Cloning, Molecular, Escherichia coli genetics, Escherichia coli metabolism, Genetic Vectors chemistry, Genetic Vectors metabolism, Glucans metabolism, Glycogen Debranching Enzyme System metabolism, HT29 Cells, Humans, Immunologic Factors biosynthesis, Immunologic Factors pharmacology, Interleukin-12 genetics, Interleukin-12 immunology, Interleukin-4 genetics, Interleukin-4 immunology, Limosilactobacillus reuteri enzymology, Limosilactobacillus reuteri genetics, Maltose metabolism, Oligosaccharides biosynthesis, Oligosaccharides pharmacology, Recombinant Proteins genetics, Recombinant Proteins metabolism, Substrate Specificity, Bacterial Proteins genetics, Gene Expression drug effects, Glycogen Debranching Enzyme System genetics, Immunologic Factors isolation & purification, Limosilactobacillus reuteri chemistry, Oligosaccharides isolation & purification
- Abstract
A wide number of Lactic Acid Bacteria (LAB) species produce α-glucans with their ability to synthesize glucansucrases (GS) which use sucrose as substrate for the glucan production. Recently another group of enzymes in LAB gained special interest for their ability to produce α-glucans targeting the substrates containing α1-4-linkages and synthesizing new (α1-6) or (α1-3)-linkages as α‑glucanotransferases. In this study, a putative 4,6‑α‑glucanotransferase (GTFB) from sourdough isolate Lactobacillus reuteri E81 was identified and expressed in Escherichia coli. The biochemical characterization of the GTFB-E81 confirmed its function as it cleaved the α1-4-linkages in different substrates and produced new gluco-oligomers/polymers containing α1-6 linkages together with the α1-4-linkages detected by NMR analysis. GTFB-E81 produced malto-oligosaccharides targeting maltose and maltoheptaose as substrates with up to DP 8 detected by TLC and ESI-MS/MS analysis. The functional roles of these malto-oligosaccharides were determined by testing their immune-modulatory functions in HT29 cells and they triggered the production of anti-inflammatory 1L-4 and pro-inflammatory IL-12 cytokines., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
47. Whole cell application of Lactobacillus paracasei BD101 to produce enantiomerically pure (S)-cyclohexyl(phenyl)methanol.
- Author
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Şahin E, Serencam H, and Dertli E
- Abstract
In this study, a total of 10 bacterial strains were screened for their ability to reduce cyclohexyl(phenyl)methanone 1 to its corresponding alcohol. Among these strains, Lactobacillus paracasei BD101 was found to be the most successful biocatalyst to reduce the ketones to the corresponding alcohols. The reaction conditions were systematically optimized for the reducing agent L paracasei BD101, which showed high enantioselectivity and conversion for the bioreduction. The preparative scale asymmetric reduction of cyclohexyl(phenyl)methanone (1) by L paracasei BD101 gave (S)-cyclohexyl(phenyl)methanol (2) with 92% yield and >99% enantiomeric excess. The preparative scale study was carried out, and a total of 5.602 g of (S)-cyclohexyl(phenyl)methanol in high enantiomerically pure form (>99% enantiomeric excess) was produced. L paracasei BD101 has been shown to be an important biocatalyst in asymmetric reduction of bulky substrates. This study demonstrates the first example of the effective synthesis of (S)-cyclohexyl(phenyl)methanol by the L paracasei BD101 as a biocatalyst in preparative scale., (© 2019 Wiley Periodicals, Inc.)
- Published
- 2019
- Full Text
- View/download PDF
48. Characterization of chemical, molecular, thermal and rheological properties of medlar pectin extracted at optimum conditions as determined by Box-Behnken and ANFIS models.
- Author
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Al-Amoudi RH, Taylan O, Kutlu G, Can AM, Sagdic O, Dertli E, and Yilmaz MT
- Subjects
- Spectroscopy, Fourier Transform Infrared, Viscosity, Fruit chemistry, Pectins chemistry, Rheology
- Abstract
In this work, response surface methodology and adaptive neuro-fuzzy inference system approaches were used to predict and model effect of extraction conditions of pectin from medlar fruit (Mespilus germanica L.). The pectin extracted at optimized conditions (89 °C, 4.83 h and 4.2 pH) could be classified as high methoxyl pectin. Sugar composition analysis showed that pectin was mainly composed of D-galacturonic acid, L-arabinose, L-rhamnose, D-galactose and D-glucose. Fourier Transform Infrared Spectroscopy, RAMAN and nuclear magnetic resonance spectra confirmed molecular structure, revealing presence of D-galacturonic acid backbone. X-ray diffraction patterns revealed an amorphous structure. Differential scanning calorimetry showed endothermic (123 °C) and exothermic peaks (192 °C). Thermogravimetric analysis revealed three decomposition regions, 50-225 °C, 225-400 °C and 400-600 °C. Steady and dynamic shear analyses revealed that pectin had a pseudo-plastic behavior with storage (G') and loss (G″) modulus increasing with increment in frequency, indicating viscoelastic structure more predominantly elastic than viscous., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
49. Response surface methodology as optimization strategy for asymmetric bioreduction of acetophenone using whole cell of Lactobacillus senmaizukei .
- Author
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Çolak NS, Şahin E, Dertli E, Yilmaz MT, and Taylan O
- Subjects
- Alcohols metabolism, Biocatalysis, Hydrogen-Ion Concentration, Industrial Microbiology, Lactobacillus cytology, Oxidation-Reduction, Temperature, Acetophenones metabolism, Lactobacillus metabolism
- Abstract
Whole cell applications are one of the main methodologies for the bioreduction of prochiral ketones to obtain enantiomerically rich chiral secondary alcohols which are mainly affected by the culture parameters of the whole cell. In this study, whole cell of Lactobacillus senmaizukei as a safe Lactic Acid Bacteria (LAB) was used for the reduction of acetophenone and Response Surface Methodology (RSM) application was used to optimize the culture parameters in terms of temperature, pH, incubation time, and agitation level to obtain the highest enantiomeric excess (ee) and conversion rate. The predicted optimum conditions for the bioreduction with whole cell Lactobacillus senmaizukei were found to be pH of 5.25, temperature of 25 °C, incubation time of 72 hr, and agitation level of 100 rpm. Importantly, the efficiency of the reduction of the acetophenone was significantly affected by the linear and quadratic effects of culture parameters. These findings are important to show the role of culture parameters for the bioreduction reactions and also the efficiency of the RSM technique to optimize these parameters.
- Published
- 2019
- Full Text
- View/download PDF
50. Glucan type exopolysaccharide (EPS) shows prebiotic effect and reduces syneresis in chocolate pudding.
- Author
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İspirli H, Demirbaş F, and Dertli E
- Abstract
Exopolysaccharides (EPS) of lactic acid bacteria are important biopolymers that can improve the physicochemical properties of food products and act as prebiotics. In this study the physicochemical role and the prebiotic effects of a glucan type EPS with (α1-3) and (α1-6) linkages were assessed in chocolate pudding containing Lactobacillus rhamnosus GG as a probiotic strain. The functions of EPS were determined by developing three different formulations: control, probiotic ( Lactobacillus GG) and symbiotic pudding ( Lactobacillus GG + EPS) samples. The pH and acidity of the symbiotic pudding sample were higher than the probiotic and the control samples during the 28-day of storage period. Similarly, an important level of increment in Lactobacillus GG levels in symbiotic sample was observed compared to the probiotic sample suggesting the prebiotic role of the α-glucan. Importantly, the syneresis in symbiotic pudding sample reduced significantly compared to other pudding samples which is related with the physicochemical role of glucan type EPS. This study reveals the prebiotic and physicochemical roles of α-glucan type EPS in a chocolate pudding model.
- Published
- 2018
- Full Text
- View/download PDF
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