9 results on '"Dennis M. Pederson"'
Search Results
2. Tryptophan absolute stereochemistry in viral coat proteins from raman optical activity
- Author
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Dennis M. Pederson, Loren A. Day, Ewan W. Blanch, Lutz Hecht, and Laurence D. Barron
- Subjects
Stereochemistry ,Chemistry ,Circular Dichroism ,Tryptophan ,Stereoisomerism ,General Chemistry ,Spectrum Analysis, Raman ,Biochemistry ,Catalysis ,Viral Coat Proteins ,Colloid and Surface Chemistry ,Capsid ,Bacteriophages ,Muramidase ,Raman optical activity - Published
- 2001
3. The protein capsid of filamentous bacteriophage PH75 from Thermus thermophilus
- Author
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D.A. Marvin, Dennis M Pederson, Maoxiao Yu, Richard N. Perham, Liam C. Welsh, Michael R. Slater, and Matthew Sampson
- Subjects
Models, Molecular ,Inovirus ,Genes, Viral ,Protein subunit ,Molecular Sequence Data ,Mass Spectrometry ,Capsid ,X-Ray Diffraction ,Structural Biology ,Computer Simulation ,Amino Acid Sequence ,Protein Structure, Quaternary ,Molecular Biology ,Peptide sequence ,biology ,Base Sequence ,Circular Dichroism ,Thermus thermophilus ,Virus Assembly ,Bacteriophage Pf1 ,Temperature ,Virion ,biology.organism_classification ,Crystallography ,Microscopy, Electron ,Protein Subunits ,Membrane protein ,Filamentous bacteriophage ,DNA, Viral ,Biophysics ,Solvents ,Thermodynamics ,Tyrosine ,Sequence Alignment ,Sequence Analysis ,Iodine - Abstract
The PH75 strain of filamentous bacteriophage (Inovirus) grows in the thermophilic bacterium Thermus thermophilus at 70 °C. We have characterized the viral DNA and determined the amino acid sequence of the major coat protein, p8. The p8 protein is synthesized without a leader sequence, like that of bacteriophage Pf3 but unlike that of bacteriophage Pf1, both of which grow in the mesophile Pseudomonas aeruginosa. X-ray diffraction patterns from ordered fibres of the PH75 virion are similar to those from bacteriophages Pf1 and Pf3, indicating that the protein capsid of the PH75 virion has the same helix symmetry and subunit shape, even though the primary structures of the major coat proteins are quite different and the virions assemble at very different temperatures. We have used this information to build a molecular model of the PH75 protein capsid based on that of Pf1, and refined the model by simulated annealing, using fibre diffraction data extending to 2.4 A resolution in the meridional direction and to 3.1 A resolution in the equatorial direction. The common design may reflect a fundamental motif of α-helix packing, although differences exist in the DNA packaging and in the means of insertion of the major coat protein of these filamentous bacteriophages into the membrane of the host bacterial cell. These may reflect differences in the assembly mechanisms of the virions.
- Published
- 2001
4. A novel covalent modification of nitrogenase in a cyanobacterium
- Author
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Dennis M. Pederson, Christopher J. Smith, John R. Gallon, Jiujun Cheng, Victoria A. Gallon, Sabrina Rüggeberg, Helmuth Hilz, Helen M. Richards, and Lisa J. Dougherty
- Subjects
Gloeothece ,Biophysics ,Palmitic Acid ,Covalent modification ,macromolecular substances ,Cyanobacteria ,Biochemistry ,chemistry.chemical_compound ,Palmitoylation ,Structural Biology ,Metalloproteins ,Nitrogenase ,Genetics ,PAGE - Polyacrylamide gel electrophoresis ,Molecular Biology ,HEPES ,biology ,Fe-protein ,Rhodospirillum rubrum ,Cell Biology ,biology.organism_classification ,chemistry ,bacteria ,Electrophoresis, Polyacrylamide Gel ,Photosynthetic bacteria ,Cyanobacterium ,Protein Processing, Post-Translational - Abstract
In extracts of the unicellular cyanobacterium Gloeothece, the Fe-protein of nitrogenase can be separated by SDS–PAGE into two antigenically identifiable components. Unlike the situation in photosynthetic bacteria such as Rhodospirillum rubrum, these two forms do not arise from covalent modification of the protein by ADP-ribosylation. Rather, the Fe-protein of Gloeothece nitrogenase is subjected to modification by palmitoylation.
- Published
- 2000
5. β-Galactosidase from Bacillus stearothermophilus
- Author
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Dennis M. Pederson and Richard E. Goodman
- Subjects
Bacilli ,Immunology ,Carbohydrates ,Applied Microbiology and Biotechnology ,Microbiology ,Geobacillus stearothermophilus ,chemistry.chemical_compound ,Genetics ,Beta-galactosidase ,Bovine serum albumin ,Lactose ,Molecular Biology ,Spores, Bacterial ,chemistry.chemical_classification ,Chromatography ,Cell-Free System ,biology ,Strain (chemistry) ,Chemistry ,Thermophile ,Temperature ,Galactose ,General Medicine ,Hydrogen-Ion Concentration ,Nitrophenylgalactosides ,biology.organism_classification ,Aerobiosis ,Galactosidases ,Molecular Weight ,Enzyme ,biology.protein ,Enzyme Repression - Abstract
Several strains of thermophilic aerobic spore-forming bacilli synthesize β-galactosidase (EC 3.2.1.23) constitutively. The constitutivity is apparently not the result of a temperature-sensitive repressor. The β-galactosidase from one strain, investigated in cell-free extracts, has a pH optimum between 6.0 and 6.4 and a very sharp pH dependence on the acid side of its optimum. The optimum temperature for this enzyme is 65 °C and the Arrhenius activation energy is about 24 kcal/mol below 47 °C and 16 kcal/mol above that temperature. At 55 °C the Km is 0.11 M for lactose and 9.8 × 10−3 M for o-nitrophenyl-β-D-galactopyranoside. The enzyme is strongly product-inhibited by galactose (Ki = 2.5 × 10−3 M). It is relatively stable at 50 °C, losing only half of its activity after 20 days at this temperature. At 60 °C more than 60% of the activity is lost in 10 min. However, the enzyme is protected somewhat against thermal inactivation by protein, and in the presence of 4 mg/ml of bovine serum albumin the enzyme is only 18% inactivated in 10 min at 60 °C. Its molecular weight, estimated by disc gel electrophoresis, is 215 000.
- Published
- 1976
- Full Text
- View/download PDF
6. Isozymes of α-galactosidase from Bacillus stearothermophilus
- Author
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Dennis M. Pederson and Richard E. Goodman
- Subjects
Tris ,Low protein ,Immunology ,Carbohydrates ,Cellobiose ,Applied Microbiology and Biotechnology ,Microbiology ,Isozyme ,Geobacillus stearothermophilus ,chemistry.chemical_compound ,Genetics ,Melibiose ,Molecular Biology ,chemistry.chemical_classification ,Gel electrophoresis ,Chromatography ,Molecular mass ,Temperature ,General Medicine ,Hydrogen-Ion Concentration ,Galactosidases ,Isoenzymes ,Molecular Weight ,Kinetics ,Enzyme ,chemistry ,Biochemistry ,alpha-Galactosidase - Abstract
Two molecular forms of alpha-galactosidase (EC 3.2.1.22) synthesized constitutively by Bacillus stearothermophilus, strain AT-7, have been purified. alpha-Galactosidase I (with the substrate p-nitrophenyl alpha-D-galactopyranoside (PNPG)) has a pH optimum of 6 and half-life at 65 degrees C of2 h at low protein concentration. alpha-Galactosidase II has a pH optimum of 7 with PNPG and a half-life at 65 degrees C of about 3 min. The isozymes also differ with respect to their Km with PNPG and melibiose. Both enzymes are inhibited competitively by D-galactose, melibiose, and Tris. With the beta-glycosides cellobiose and lactose either noncompetitive or mixed-type inhibition is observed, with the pattern dependent on both the pH and the isozyme. The two isozymes have similar Arrhenius activation energies (about 20 kcal/mol, 1 kcal = 4.184 kJ). Their molecular weights, estimated by disc gel electrophoresis, are alpha-galactosidase I, 280 000 +/- 30 000 and alpha-galactosidase II, 325 000 +/- 15 000. Dodecyl sulfate gel electrophoresis gave a single band for each enzyme. The respective molecular weights, 81 000 +/- 500 for alpha-galactosidase I and 84 000 +/- 500 for alpha-galactosidase II, suggest that both enzymes consist of four subunits.
- Published
- 1980
- Full Text
- View/download PDF
7. The use of nickel to probe the role of hydrogen metabolism in cyanobacterial nitrogen fixation
- Author
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Dennis M. Pederson, Arlene Daday, and Geoffrey D. Smith
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Cyanobacteria ,Hydrogenase ,Hot Temperature ,Hydrogen ,Inorganic chemistry ,chemistry.chemical_element ,Biochemistry ,Nickel ,Nitrogen Fixation ,Nitrogenase ,biology ,Chemistry ,Acetylene ,Biological Transport ,General Medicine ,Metabolism ,biology.organism_classification ,Oxygen ,Kinetics ,Nitrogen fixation ,Vanadium nitrogenase ,Nuclear chemistry - Abstract
Summary The hydrogenase activities of the heterocystous cyanobacteria Anabaena cylindrica and Mastigocladus laminosus are nickel dependent, based on their inability to consume hydrogen with various electron acceptors or produce hydrogen with dithionite-reduced methyl viologen, after growth in nickel-depleted medium. Upon addition of nickel ions to nickel-deficient cultures of A. cylindrica , the hydrogenase activity recovered in a manner which was protein synthesis-dependent, the recovery being inhibited by chloramphenicol. We have used the nickel dependence of the hydrogenase as a probe of the possible roles of H 2 consumption in enhancing nitrogen fixation, and particularly for protecting nitrogenase against oxygen inhibition. Although at the usual growth temperatures (25° for A. cylindrica and 40° for M. laminosus ), the cells consume H 2 vigorously in an oxyhydrogen reaction after growth in the presence of nickel ions, we have not found that the reaction confers any significant additional protection of nitrogenase, either at aerobic pO 2 (for both organisms) or at elevated pO 2 (for A. cylindrica ). However, at elevated temperatures ( e.g. , 40° for A. cylindrica and 48° for M. laminosus ) a definite protective effect was observed. At these temperatures both organisms rapidly lost acetylene reduction activity under aerobic conditions. When hydrogen gas (10 %) was present, the cells retained approximately 50 % of the nitrogenase activity observed under anaerobic conditions (argon gas phase). No such protection by hydrogen gas was observed with nickel-deficient cells. Studies with cell-free extracts of A. cylindrica showed that the predominant effect of temperature was not due to thermal inactivation of nitrogenase.
- Published
- 1986
8. Subtilisin cleavage of bovine plasma albumin. Reversible association of the two primary fragments and their relation to the structure of the parent protein
- Author
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Joseph F. Foster and Dennis M. Pederson
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Chemical Phenomena ,Detergents ,Iodoacetates ,Cleavage (embryo) ,Biochemistry ,Endopeptidases ,Animals ,Cysteine ,Sulfhydryl Compounds ,Amino Acids ,Cellulose ,Chemistry ,Sulfates ,Subtilisin ,Albumin ,Serum Albumin, Bovine ,Hydrogen-Ion Concentration ,Chromatography, Ion Exchange ,Electrophoresis, Disc ,Bovine plasma ,Molecular Weight ,Acrylates ,Spectrophotometry ,Chromatography, Gel ,Cattle ,Ultracentrifugation ,Bacillus subtilis ,Densitometry - Published
- 1969
9. Lecture demonstrations in kinetics relevant to the biology student
- Author
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Dennis M. Pederson
- Subjects
Chemistry ,Galactose ,General Chemistry ,Biology ,Science education ,Engineering physics ,Galactosidases ,Education ,Nitrophenols ,Kinetics ,ComputingMilieux_COMPUTERSANDEDUCATION ,Engineering ethics ,Glycosides ,Chemistry (relationship) ,Pyrans ,Biophysical chemistry - Abstract
A large number of students taking chemistry courses today have, as their goal, a career in biologically related fields. It is thus not surprising that one often hears the question: Why do I need to...
- Published
- 1974
- Full Text
- View/download PDF
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